- Scripts used for the analyses of the results reported in
- Project information
- Anatomical mask MNI space
Download the mediat temporal lobe (A-MTL) mask (.nii) used for the analyses here
tissue_prob_ic_sel.sh Script that helps us determine which independent component (IC) is more likely to be noise (cerebrospinal fluid, CSF or white matter, WM) than a true network (gray matter, GM) based on the volume of each tissue compartment (for Fig. 1 of the paper)
ES_per_structure.sh Script to calculate mean and standard deviation for later effect size calculation per structure and IC using fslstats (Fig. 2B of the paper)
masks_in_fun_space.sh Script to rescale the A-MTL structure to the functional native space to calculate the temporal SNR (for the Supplement)
TSNR_AMTL.sh Script to calculate the temporal signal-to-noise-ratio for each A-MTL structure using fslstats (reported in the Supplement)
coord_max_voxel.sh Script to obtain and store the MNI coordinates of the 'peak' voxel of functional connectivity, based on the tstat image and using fslstats (Table 1 of the paper)
create_table.sh Script to create a table in .txt using the column command
slicewise_voxel_count.sh Script to count the number of voxels in each slice along the anterior-posterior axis (y-axis) for each A-MTL structure, for each IC/brain network (Fig. 4, schematics, of the paper)