References.Rmd

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# References 

Since GENAVi uses a set of bioinformatics tools in its backend, please cite them if they were used in your analysis.

* Heatmaps:
  * Schep, Alicia N., and Sarah K. Kummerfeld. "iheatmapr: interactive complex heatmaps in R." J Open Sour Softw 2.16 (2017): 359.
* Differential expression analysis: 
  * Love MI, Huber W, Anders S (2014). “Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.” Genome Biology, 15, 550. doi: 10.1186/s13059-014-0550-8.
* Enrichment analysis: 
  * Yu G, Wang L, Han Y, He Q (2012). “clusterProfiler: an R package for comparing biological themes among gene clusters.” OMICS: A Journal of Integrative Biology, 16(5), 284-287. doi: 10.1089/omi.2011.0118.