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setup.cfg
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setup.cfg
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[metadata]
name = monai
author = MONAI Consortium
author_email = [email protected]
url = https://monai.io/
description = AI Toolkit for Healthcare Imaging
long_description = file:README.md
long_description_content_type = text/markdown; charset=UTF-8
platforms = OS Independent
license = Apache License 2.0
license_files =
LICENSE
project_urls =
Documentation=https://docs.monai.io/
Bug Tracker=https://github.com/Project-MONAI/MONAI/issues
Source Code=https://github.com/Project-MONAI/MONAI
[options]
python_requires = >= 3.6
# for compiling and develop setup only
# no need to specify the versions so that we could
# compile for multiple targeted versions.
setup_requires =
torch
ninja
install_requires =
torch>=1.5
numpy>=1.17
[options.extras_require]
all =
nibabel
scikit-image>=0.14.2
pillow
tensorboard
gdown>=3.6.4
pytorch-ignite==0.4.5
torchvision
itk>=5.0, <=5.1.2
tqdm>=4.47.0
lmdb
psutil
cucim~=0.19.0
openslide-python==1.1.2
pandas
einops
nibabel =
nibabel
skimage =
scikit-image>=0.14.2
pillow =
pillow!=8.3.0
tensorboard =
tensorboard
gdown =
gdown>=3.6.4
ignite =
pytorch-ignite==0.4.5
torchvision =
torchvision
itk =
itk>=5.0, <=5.1.2
tqdm =
tqdm>=4.47.0
lmdb =
lmdb
psutil =
psutil
cucim =
cucim~=0.19.0
openslide =
openslide-python==1.1.2
pandas =
pandas
einops =
einops
[flake8]
select = B,C,E,F,N,P,T4,W,B9
max_line_length = 120
# C408 ignored because we like the dict keyword argument syntax
# E501 is not flexible enough, we're using B950 instead
ignore =
E203,E305,E402,E501,E721,E741,F821,F841,F999,W503,W504,C408,E302,W291,E303,
# N812 lowercase 'torch.nn.functional' imported as non lowercase 'F'
N812
per_file_ignores = __init__.py: F401
exclude = *.pyi,.git,.eggs,monai/_version.py,versioneer.py,venv,.venv,_version.py
[isort]
known_first_party = monai
profile = black
line_length = 120
skip = .git, .eggs, venv, .venv, versioneer.py, _version.py, conf.py, monai/__init__.py
skip_glob = *.pyi
[versioneer]
VCS = git
style = pep440
versionfile_source = monai/_version.py
versionfile_build = monai/_version.py
tag_prefix =
parentdir_prefix =
[mypy]
# Suppresses error messages about imports that cannot be resolved.
ignore_missing_imports = True
# Changes the treatment of arguments with a default value of None by not implicitly making their type Optional.
no_implicit_optional = True
# Warns about casting an expression to its inferred type.
warn_redundant_casts = True
# No error on unneeded # type: ignore comments.
warn_unused_ignores = False
# Shows a warning when returning a value with type Any from a function declared with a non-Any return type.
warn_return_any = True
# Prohibit equality checks, identity checks, and container checks between non-overlapping types.
strict_equality = True
# Shows column numbers in error messages.
show_column_numbers = True
# Shows error codes in error messages.
show_error_codes = True
# Use visually nicer output in error messages: use soft word wrap, show source code snippets, and show error location markers.
pretty = False
[mypy-versioneer]
# Ignores all non-fatal errors.
ignore_errors = True
[mypy-monai._version]
# Ignores all non-fatal errors.
ignore_errors = True
[mypy-monai.eggs]
# Ignores all non-fatal errors.
ignore_errors = True
[pytype]
# Space-separated list of files or directories to exclude.
exclude = versioneer.py _version.py
# Space-separated list of files or directories to process.
inputs = monai
# Keep going past errors to analyze as many files as possible.
keep_going = True
# Run N jobs in parallel.
jobs = 8
# All pytype output goes here.
output = .pytype
# Paths to source code directories, separated by ':'.
pythonpath = .
# Check attribute values against their annotations.
check_attribute_types = True
# Check container mutations against their annotations.
check_container_types = True
# Check parameter defaults and assignments against their annotations.
check_parameter_types = True
# Check variable values against their annotations.
check_variable_types = True
# Comma or space separated list of error names to ignore.
disable = pyi-error
# Report errors.
report_errors = True
# Experimental: Infer precise return types even for invalid function calls.
precise_return = True
# Experimental: solve unknown types to label with structural types.
protocols = True
# Experimental: Only load submodules that are explicitly imported.
strict_import = False
[coverage:run]
concurrency = multiprocessing
source = .
data_file = .coverage/.coverage
omit = setup.py
[coverage:report]
exclude_lines =
pragma: no cover
if TYPE_CHECKING:
# Don't complain if tests don't hit code:
raise NotImplementedError
if __name__ == .__main__.:
show_missing = True
skip_covered = True
[coverage:xml]
output = coverage.xml