diff --git a/CPU/juicer.sh b/CPU/juicer.sh index daeccf6..a1e974c 100755 --- a/CPU/juicer.sh +++ b/CPU/juicer.sh @@ -474,7 +474,11 @@ fi #REMOVE DUPLICATES if [ -z $final ] && [ -z $postproc ] then + touch ${outputdir}/dups.txt + touch ${outputdir}/optdups.txt + touch ${outputdir}/merged_nodups.txt awk -f ${juiceDir}/scripts/common/dups.awk -v name=${outputdir}/ ${outputdir}/merged_sort.txt + mv ${outputdir}/optdups.txt ${outputdir}/opt_dups.txt # for consistency with cluster naming in split_rmdups fi if [ -z "$genomePath" ] then