uppmax.config

// sarek/uppmax specific profile config

params {
    config_profile_contact = 'Maxime Garcia (@MaxUlysse)'
    config_profile_description = 'nf-core/sarek uppmax profile provided by nf-core/configs'

    single_cpu_mem = 7000.MB
    // Just useful until iGenomes is updated on UPPMAX
    igenomes_ignore = true
    genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle'
}

def hostname = "hostname".execute().text.trim()

if (hostname ==~ "r.*") {
    params.single_cpu_mem = 6400.MB

    process {
        withName:BamQC {
            cpus = {params.max_cpus}
            memory = {params.max_memory}
        }
    }
}

if (hostname ==~ "i.*") {
    params.single_cpu_mem = 15.GB
}

// Miarka-specific config
if (hostname ==~ "m.*") {
    params.single_cpu_mem = 7.GB
}