computerome.config

//Profile config names for nf-core/configs
params {
    config_profile_description = 'Computerome 2.0 cluster profile provided by nf-core/configs.'
    config_profile_contact = 'Marc Trunjer Kusk Nielsen (@marcmtk)'
    config_profile_url = 'https://www.computerome.dk/'
    project = null
    cache_dir = "/home/projects/$params.project/scratch"
    schema_ignore_params = "project,cache_dir,genomes,modules"
    validationSchemaIgnoreParams = "project,cache_dir,genomes,modules,schema_ignore_params"

    //Thin nodes with 192GB and Fat nodes with ~1500GB. Torque should be allowed to handle this
    max_memory = 1500.GB
    max_cpus = 40

    //There is no max walltime on the cluster, but a week seems sensible if not directly specified
    max_time = 168.h
}

singularity {
    enabled = true
    autoMounts = true
    cacheDir = params.cache_dir
}

process {
    beforeScript = "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=$params.cache_dir"
    executor = 'pbs'
    queueSize = 2000
    clusterOptions = "-A $params.project -W group_list=$params.project"
}