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refactor: Move MLAmbiguitySolver to Core #3272

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a5aa62a
fix network size issue
Corentin-Allaire Apr 3, 2024
8e4d55c
spacepoint writter
Corentin-Allaire May 31, 2024
99e1fb5
Move to Core, removed DBScan version
Corentin-Allaire Jun 11, 2024
cdae466
Merge remote-tracking branch 'upstream/main' into ML-to-Core
Corentin-Allaire Jun 11, 2024
de38b17
format
Corentin-Allaire Jun 11, 2024
31e24e1
format
Corentin-Allaire Jun 11, 2024
2f1e3cc
format
Corentin-Allaire Jun 11, 2024
2ca678c
format
Corentin-Allaire Jun 11, 2024
7737d09
updated the doc
Corentin-Allaire Jun 11, 2024
ab07a56
rename
Corentin-Allaire Jun 11, 2024
bb67645
fix P in CsvSpacePointWriter
Corentin-Allaire Jun 11, 2024
4ceb1bd
forgot to update include Onnx.cpp
Corentin-Allaire Jun 11, 2024
da5a458
forgot to update include Onnx.cpp
Corentin-Allaire Jun 11, 2024
130960a
remove cout
Corentin-Allaire Jul 9, 2024
3f1738a
uncommented line
Corentin-Allaire Aug 26, 2024
d7e1157
Merge remote-tracking branch 'upstream/main' into ML-to-Core
Corentin-Allaire Aug 28, 2024
c6e3c62
added ML solver to CI
Corentin-Allaire Aug 28, 2024
eb87b39
lint
Corentin-Allaire Aug 28, 2024
bf61491
lint
Corentin-Allaire Aug 28, 2024
a3b6874
.parent
Corentin-Allaire Aug 28, 2024
28656ae
Merge remote-tracking branch 'upstream/main' into ML-to-Core
Corentin-Allaire Aug 28, 2024
7390e7c
file naming
Corentin-Allaire Aug 28, 2024
d1bd61e
.root
Corentin-Allaire Aug 28, 2024
57f141b
Merge branch 'main' into ML-to-Core
Corentin-Allaire Aug 29, 2024
5b87fe4
reco.py
Corentin-Allaire Sep 25, 2024
555e10c
added a concept for the network
Corentin-Allaire Sep 27, 2024
bfe3b31
Merge remote-tracking branch 'upstream/main' into ML-to-Core
Corentin-Allaire Sep 27, 2024
496b1fc
Merge remote-tracking branch 'origin/ML-to-Core' into ML-to-Core
Corentin-Allaire Sep 27, 2024
68434dd
format
Corentin-Allaire Sep 27, 2024
147cb2c
p
Corentin-Allaire Sep 27, 2024
69651e3
fix CI
Corentin-Allaire Sep 27, 2024
85077d9
update
Corentin-Allaire Nov 19, 2024
410077d
licence
Corentin-Allaire Nov 20, 2024
f45b867
licence
Corentin-Allaire Nov 20, 2024
9b660f7
licence
Corentin-Allaire Nov 20, 2024
1866f64
issue in writter
Corentin-Allaire Nov 20, 2024
95250ed
reference fo ml solver
Corentin-Allaire Nov 20, 2024
1d5feef
Merge remote-tracking branch 'upstream/main' into ML-to-Core
Corentin-Allaire Nov 20, 2024
64f870d
matching for solver writter
Corentin-Allaire Nov 20, 2024
2a085d5
more documentation, move the ML solver at the end of the chain
Corentin-Allaire Nov 20, 2024
2c2bed0
fix CI ?
Corentin-Allaire Nov 20, 2024
a70878e
missing option for ML Solver
Corentin-Allaire Nov 20, 2024
8fae08d
hopefully fixing the CI
Corentin-Allaire Nov 20, 2024
97b1c35
hopefully fixing the CI
Corentin-Allaire Nov 20, 2024
9e79097
Physmon ref
Corentin-Allaire Nov 21, 2024
2f8e11a
Physmon fix
Corentin-Allaire Nov 21, 2024
4135c0e
Merge remote-tracking branch 'upstream/main' into ML-to-Core
Corentin-Allaire Nov 21, 2024
fa8d97b
adressing comments
Corentin-Allaire Nov 21, 2024
dc21c86
Merge remote-tracking branch 'upstream/main' into ML-to-Core
Corentin-Allaire Nov 21, 2024
e949fe8
remove measurement from loop
Corentin-Allaire Nov 23, 2024
21be966
Merge remote-tracking branch 'upstream/main' into ML-to-Core
Corentin-Allaire Nov 23, 2024
e6d93cb
Merge branch 'main' into ML-to-Core
CarloVarni Nov 25, 2024
f311a2b
remove unnecessary part of concept
Corentin-Allaire Nov 26, 2024
ada0ef7
Merge remote-tracking branch 'upstream/main' into ML-to-Core
Corentin-Allaire Nov 26, 2024
4e07f5c
Merge branch 'main' into ML-to-Core
Corentin-Allaire Nov 27, 2024
ea981bb
Update Examples/Io/Csv/src/CsvSpacePointWriter.cpp
Corentin-Allaire Nov 27, 2024
c2f7b12
fix broken loop
Corentin-Allaire Nov 28, 2024
abcaf43
Merge remote-tracking branch 'origin/ML-to-Core' into ML-to-Core
Corentin-Allaire Nov 28, 2024
d3c9e60
Merge remote-tracking branch 'upstream/main' into ML-to-Core
Corentin-Allaire Nov 28, 2024
6b2cc82
update physmon file
Corentin-Allaire Nov 28, 2024
4b27aac
Merge branch 'main' into ML-to-Core
Corentin-Allaire Nov 29, 2024
dbe4a81
Merge branch 'main' into ML-to-Core
Corentin-Allaire Dec 5, 2024
a3555d0
Merge branch 'main' into ML-to-Core
kodiakhq[bot] Dec 6, 2024
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9 changes: 9 additions & 0 deletions CI/physmon/phys_perf_mon.sh
Original file line number Diff line number Diff line change
Expand Up @@ -265,6 +265,15 @@ function trackfinding() {
$path/performance_finding_ckf_ambi.html \
$path/performance_finding_ckf_ambi
fi

if [ -f $refdir/$path/performance_finding_ckf_ml_solver.root ]; then
run_histcmp \
$outdir/data/$path/performance_finding_ckf_ml_solver.root \
$refdir/$path/performance_finding_ckf_ml_solver.root \
"ML Ambisolver | ${name}" \
$path/performance_finding_ckf_ml_solver.html \
$path/performance_finding_ckf_ml_solver
fi
}

function vertexing() {
Expand Down
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27 changes: 27 additions & 0 deletions CI/physmon/workflows/physmon_trackfinding_ttbar_pu200.py
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,9 @@
CkfConfig,
addCKFTracks,
addAmbiguityResolution,
addAmbiguityResolutionML,
AmbiguityResolutionConfig,
AmbiguityResolutionMLConfig,
addVertexFitting,
VertexFinder,
TrackSelectorConfig,
Expand Down Expand Up @@ -134,13 +136,25 @@
outputDirRoot=tp,
)

addAmbiguityResolutionML(
s,
AmbiguityResolutionMLConfig(
maximumSharedHits=3, maximumIterations=1000000, nMeasurementsMin=6
),
tracks="ckf_tracks",
outputDirRoot=tp,
onnxModelFile=Path(__file__).resolve().parent.parent.parent.parent
/ "thirdparty/OpenDataDetector/data/duplicateClassifier.onnx",
)

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addAmbiguityResolution(
s,
AmbiguityResolutionConfig(
maximumSharedHits=3,
maximumIterations=100000,
nMeasurementsMin=6,
),
tracks="ckf_tracks",
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outputDirRoot=tp,
)

Expand Down Expand Up @@ -187,6 +201,17 @@
tp / "performance_fitting_ambi.root",
tp / "performance_fitting_ckf_ambi.root",
)

shutil.move(
tp / "performance_finding_ambiML.root",
tp / "performance_finding_ckf_ml_solver.root",
)

shutil.move(
tp / "performance_fitting_ambiML.root",
tp / "performance_fitting_ckf_ml_solver.root",
)

for vertexing in ["amvf_gauss_notime", "amvf_grid_time"]:
shutil.move(
tp / f"{vertexing}/performance_vertexing.root",
Expand All @@ -200,6 +225,8 @@
"performance_fitting_ckf.root",
"performance_finding_ckf_ambi.root",
"performance_fitting_ckf_ambi.root",
"performance_finding_ckf_ml_solver.root",
"performance_fitting_ckf_ml_solver.root",
"performance_vertexing_amvf_gauss_notime.root",
"performance_vertexing_amvf_grid_time.root",
]:
Expand Down
58 changes: 58 additions & 0 deletions Core/include/Acts/AmbiguityResolution/AmbiguityNetworkConcept.hpp
Original file line number Diff line number Diff line change
@@ -0,0 +1,58 @@
// This file is part of the ACTS project.
//
// Copyright (C) 2016 CERN for the benefit of the ACTS project
//
// This Source Code Form is subject to the terms of the Mozilla Public
// License, v. 2.0. If a copy of the MPL was not distributed with this
// file, You can obtain one at https://mozilla.org/MPL/2.0/.

#pragma once

#include "Acts/EventData/TrackContainer.hpp"
#include "Acts/EventData/TrackContainerFrontendConcept.hpp"
#include "Acts/EventData/VectorMultiTrajectory.hpp"
#include "Acts/EventData/VectorTrackContainer.hpp"
#include "Acts/Utilities/Concepts.hpp"

namespace Acts {

using DummyTrackContainer =
TrackContainer<VectorTrackContainer, VectorMultiTrajectory,
detail::ValueHolder>;
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/// @brief Concept for the ambiguity network used in the ambiguity resolution
///
/// The ambiguity network correspond to the AmbiguityTrackClassifier found in
/// the Onnx plugin. It is used to score the tracks and select the best ones.
///
/// The constructor of the Ambiguity Solver network should take string as input
/// corresponding to the path of the ONNX model.
/// The implementation of the Ambiguity Solver network should have two methods:
/// - inferScores: takes clusters (a list of track ID associated with a cluster
/// ID) and the track container and return an outputTensor (list of scores for
/// each track in the clusters).
/// - trackSelection: Takes clusters and the output tensor from the inferScores
/// method and return the list of track ID to keep.
///
/// @tparam N the type of the network
template <typename network_t>
concept AmbiguityNetworkConcept =
TrackContainerFrontend<DummyTrackContainer> &&
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requires(
DummyTrackContainer &tracks,
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std::unordered_map<std::size_t, std::vector<std::size_t>> &clusters,
std::vector<std::vector<float>> &outputTensor, const char *modelPath,
network_t &n) {
requires TrackContainerFrontend<DummyTrackContainer>;
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{ network_t(modelPath) } -> std::same_as<network_t>;

{
n.inferScores(clusters, tracks)
} -> std::same_as<std::vector<std::vector<float>>>;
{
n.trackSelection(clusters, outputTensor)
} -> std::same_as<std::vector<std::size_t>>;
};

} // namespace Acts
136 changes: 136 additions & 0 deletions Core/include/Acts/AmbiguityResolution/AmbiguityResolutionML.hpp
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Original file line number Diff line number Diff line change
@@ -0,0 +1,136 @@
// This file is part of the ACTS project.
//
// Copyright (C) 2016 CERN for the benefit of the ACTS project
//
// This Source Code Form is subject to the terms of the Mozilla Public
// License, v. 2.0. If a copy of the MPL was not distributed with this
// file, You can obtain one at https://mozilla.org/MPL/2.0/.

#pragma once

#include "Acts/AmbiguityResolution/AmbiguityNetworkConcept.hpp"
#include "Acts/Definitions/Units.hpp"
#include "Acts/EventData/TrackContainer.hpp"
#include "Acts/Utilities/Delegate.hpp"
#include "Acts/Utilities/Logger.hpp"

#include <cstddef>
#include <map>
#include <memory>
#include <string>
#include <tuple>
#include <vector>

namespace Acts {

/// Generic implementation of the machine learning ambiguity resolution
/// Contains method for data preparations
template <AmbiguityNetworkConcept AmbiguityNetwork>
class AmbiguityResolutionML {
public:
struct Config {
/// Path to the model file for the duplicate neural network
std::string inputDuplicateNN = "";
/// Minimum number of measurement to form a track.
std::size_t nMeasurementsMin = 7;
};
/// Construct the ambiguity resolution algorithm.
///
/// @param cfg is the algorithm configuration
/// @param logger is the logging instance
AmbiguityResolutionML(const Config& cfg,
std::unique_ptr<const Logger> logger = getDefaultLogger(
"AmbiguityResolutionML", Logging::INFO))
: m_cfg{cfg},
m_duplicateClassifier(m_cfg.inputDuplicateNN.c_str()),
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m_logger{std::move(logger)} {}

/// Associate the hits to the tracks
///
/// This algorithm performs the mapping of hits ID to track ID. Our final goal
/// is too loop over all the tracks (and their associated hits) by order of
/// decreasing number hits for this we use a multimap where the key is the
/// number of hits as this will automatically perform the sorting.
///
/// @param tracks is the input track container
/// @param sourceLinkHash is the hash function for the source link, will be used to associate to tracks
/// @param sourceLinkEquality is the equality function for the source link used used to associated hits to tracks
/// @return an ordered list containing pairs of track ID and associated measurement ID
template <TrackContainerFrontend track_container_t,
typename source_link_hash_t, typename source_link_equality_t>
std::multimap<int, std::pair<std::size_t, std::vector<std::size_t>>>
mapTrackHits(const track_container_t& tracks,
const source_link_hash_t& sourceLinkHash,
const source_link_equality_t& sourceLinkEquality) const {
// A map to store (and generate) the measurement index for each source link
auto measurementIndexMap =
std::unordered_map<SourceLink, std::size_t, source_link_hash_t,
source_link_equality_t>(0, sourceLinkHash,
sourceLinkEquality);

// A map to store the track Id and their associated measurements ID, a
// multimap is used to automatically sort the tracks by the number of
// measurements
std::multimap<int, std::pair<std::size_t, std::vector<std::size_t>>>
trackMap;
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std::size_t trackIndex = 0;
std::vector<std::size_t> measurements;
// Loop over all the trajectories in the events
for (const auto& track : tracks) {
// Kick out tracks that do not fulfill our initial requirements
if (track.nMeasurements() < m_cfg.nMeasurementsMin) {
continue;
}
measurements.clear();
for (auto ts : track.trackStatesReversed()) {
if (ts.typeFlags().test(Acts::TrackStateFlag::MeasurementFlag)) {
SourceLink sourceLink = ts.getUncalibratedSourceLink();
// assign a new measurement index if the source link was not seen yet
auto emplace = measurementIndexMap.try_emplace(
sourceLink, measurementIndexMap.size());
measurements.push_back(emplace.first->second);
}
}
trackMap.emplace(track.nMeasurements(),
std::make_pair(trackIndex, measurements));
++trackIndex;
}
return trackMap;
}

/// Select the track associated with each cluster
///
/// In this algorithm the call the neural network to score the tracks and then
/// select the track with the highest score in each cluster
///
/// @param clusters is a map of clusters, each cluster correspond to a vector of track ID
/// @param tracks is the input track container
/// @return a vector of trackID corresponding tho the good tracks
template <TrackContainerFrontend track_container_t>
std::vector<std::size_t> solveAmbiguity(
std::unordered_map<std::size_t, std::vector<std::size_t>>& clusters,
const track_container_t& tracks) const {
std::vector<std::vector<float>> outputTensor =
m_duplicateClassifier.inferScores(clusters, tracks);
std::vector<std::size_t> goodTracks =
m_duplicateClassifier.trackSelection(clusters, outputTensor);

return goodTracks;
}

private:
// Configuration
Config m_cfg;

// The neural network for duplicate classification, the network
// implementation is chosen with the AmbiguityNetwork template parameter
AmbiguityNetwork m_duplicateClassifier;

/// Logging instance
std::unique_ptr<const Logger> m_logger = nullptr;

/// Private access to logging instance
const Logger& logger() const { return *m_logger; }
};

} // namespace Acts
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,15 @@

namespace Acts::detail {

/// Clusterise tracks based on shared hits
/// Cluster tracks based on shared hits.
///
/// In this algorithm we will loop through all the tracks by decreasing number
/// of measurements. Cluster are created when a new track is encountered that
/// doesn't share hits with the leading track of a previous cluster (with the
/// leading track defined as the track that lead to the cluster creation). If a
/// track shares hits with the leading track of a cluster, it is added to that
/// cluster. If a track shares hits with multiple clusters, it is associated to
/// the cluster with the leading track with the most hits.
///
/// @param trackMap : Multimap storing pair of track ID and vector of measurement ID. The keys are the number of measurement and are just there to facilitate the ordering.
/// @return an unordered map representing the clusters, the keys the ID of the primary track of each cluster and the store a vector of track IDs.
Expand Down
2 changes: 0 additions & 2 deletions Examples/Algorithms/TrackFindingML/CMakeLists.txt
Original file line number Diff line number Diff line change
@@ -1,7 +1,5 @@
set(SOURCES
src/AmbiguityResolutionML.cpp
src/AmbiguityResolutionMLAlgorithm.cpp
src/AmbiguityResolutionMLDBScanAlgorithm.cpp
src/SeedFilterMLAlgorithm.cpp
)

Expand Down

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