recombinant-50A5-50random.json

{
    "variables": {
        "length": 100,
        "root to AB rate": 0.1,
        "mutant rate": 0.05,
        "mutant count": 9
    },
    "sequences": [
        {
            "id": "root",
            "length": "%(length)d"
        },
        {
            "id": "A",
            "from id": "root",
            "length": "%(length)d",
            "mutation rate": "%(root to AB rate)f"
        },
        {
            "from id": "A",
            "id prefix": "A-mutant-",
            "length": "%(length)d",
            "count": "%(mutant count)d",
            "mutation rate": "%(mutant rate)f",
            "ratchet": true
        },
        {
            "id": "B",
            "from id": "root",
            "length": "%(length)d",
            "mutation rate": "%(root to AB rate)f"
        },
        {
            "from id": "B",
            "id prefix": "B-mutant-",
            "length": "%(length)d",
            "count": "%(mutant count)d",
            "mutation rate": "%(mutant rate)f",
            "ratchet": true
        },
        {
            "id": "recombinant",
            "sections": [
                {
                    "from id": "A-mutant-5",
                    "start": 1,
                    "length": 50
                },
                {
                    "start": 51,
                    "length": 50
                }
            ]
        }
    ]
}