From 610e0c5ffbb7b5477ec70869299ef64af8e4c5a8 Mon Sep 17 00:00:00 2001
From: Sandy Yuan <sandyyuan94@gmail.com>
Date: Mon, 20 Nov 2023 12:07:36 -0800
Subject: [PATCH] fixing velocity bias along x and y direction

---
 abacusnbody/hod/GRAND_HOD.py                  |  18 ++---
 abacusnbody/hod/abacus_hod.py                 |  14 ++--
 abacusnbody/hod/prepare_sim.py                |   6 +-
 .../z2.250/galaxies_rsd/ELGs.dat              |   2 +-
 ...xcom_0_seed600_abacushod_oldfenv_MT_new.h5 | Bin 6702 -> 7982 bytes
 ...xcom_0_seed600_abacushod_oldfenv_MT_new.h5 | Bin 9360 -> 9360 bytes
 .../Mini_N64_L32/z0.000/galaxies_rsd/ELGs.dat |  67 +++++++++++-------
 .../Mini_N64_L32/z0.000/galaxies_rsd/LRGs.dat |   4 +-
 ...xcom_0_seed600_abacushod_oldfenv_MT_new.h5 | Bin 18136 -> 22936 bytes
 ...xcom_1_seed600_abacushod_oldfenv_MT_new.h5 | Bin 20944 -> 26704 bytes
 ...xcom_2_seed600_abacushod_oldfenv_MT_new.h5 | Bin 14626 -> 18226 bytes
 ...xcom_0_seed600_abacushod_oldfenv_MT_new.h5 | Bin 28512 -> 28512 bytes
 ...xcom_1_seed600_abacushod_oldfenv_MT_new.h5 | Bin 32432 -> 32432 bytes
 ...xcom_2_seed600_abacushod_oldfenv_MT_new.h5 | Bin 18432 -> 18432 bytes
 tests/test_hod.py                             |   2 +-
 15 files changed, 67 insertions(+), 46 deletions(-)

diff --git a/abacusnbody/hod/GRAND_HOD.py b/abacusnbody/hod/GRAND_HOD.py
index d38eaedc..64c13817 100644
--- a/abacusnbody/hod/GRAND_HOD.py
+++ b/abacusnbody/hod/GRAND_HOD.py
@@ -227,11 +227,11 @@ def gen_cent(pos, vel, mass, ids, multis, randoms, vdev, deltac, fenv, shear,
             if keep[i] == 1:
                 # loop thru three directions to assign galaxy velocities and positions
                 lrg_x[j1] = pos[i,0]
-                lrg_vx[j1] = vel[i,0] + alpha_c_L * vdev[i] # velocity bias
+                lrg_vx[j1] = vel[i,0] + alpha_c_L * vdev[i,0] # velocity bias
                 lrg_y[j1] = pos[i,1]
-                lrg_vy[j1] = vel[i,1] + alpha_c_L * vdev[i] # velocity bias
+                lrg_vy[j1] = vel[i,1] + alpha_c_L * vdev[i,1] # velocity bias
                 lrg_z[j1] = pos[i,2]
-                lrg_vz[j1] = vel[i,2] + alpha_c_L * vdev[i] # velocity bias
+                lrg_vz[j1] = vel[i,2] + alpha_c_L * vdev[i,2] # velocity bias
                 # rsd only applies to the z direction
                 if rsd and origin is not None:
                     nx = lrg_x[j1] - origin[0]
@@ -253,11 +253,11 @@ def gen_cent(pos, vel, mass, ids, multis, randoms, vdev, deltac, fenv, shear,
             elif keep[i] == 2:
                 # loop thru three directions to assign galaxy velocities and positions
                 elg_x[j2] = pos[i,0]
-                elg_vx[j2] = vel[i,0] + alpha_c_E * vdev[i] # velocity bias
+                elg_vx[j2] = vel[i,0] + alpha_c_E * vdev[i,0] # velocity bias
                 elg_y[j2] = pos[i,1]
-                elg_vy[j2] = vel[i,1] + alpha_c_E * vdev[i] # velocity bias
+                elg_vy[j2] = vel[i,1] + alpha_c_E * vdev[i,1] # velocity bias
                 elg_z[j2] = pos[i,2]
-                elg_vz[j2] = vel[i,2] + alpha_c_E * vdev[i] # velocity bias
+                elg_vz[j2] = vel[i,2] + alpha_c_E * vdev[i,2] # velocity bias
                 # rsd only applies to the z direction
                 if rsd and origin is not None:
                     nx = elg_x[j2] - origin[0]
@@ -279,11 +279,11 @@ def gen_cent(pos, vel, mass, ids, multis, randoms, vdev, deltac, fenv, shear,
             elif keep[i] == 3:
                 # loop thru three directions to assign galaxy velocities and positions
                 qso_x[j3] = pos[i,0]
-                qso_vx[j3] = vel[i,0] + alpha_c_Q * vdev[i] # velocity bias
+                qso_vx[j3] = vel[i,0] + alpha_c_Q * vdev[i,0] # velocity bias
                 qso_y[j3] = pos[i,1]
-                qso_vy[j3] = vel[i,1] + alpha_c_Q * vdev[i] # velocity bias
+                qso_vy[j3] = vel[i,1] + alpha_c_Q * vdev[i,1] # velocity bias
                 qso_z[j3] = pos[i,2]
-                qso_vz[j3] = vel[i,2] + alpha_c_Q * vdev[i] # velocity bias
+                qso_vz[j3] = vel[i,2] + alpha_c_Q * vdev[i,2] # velocity bias
                 # rsd only applies to the z direction
                 if rsd and origin is not None:
                     nx = qso_x[j3] - origin[0]
diff --git a/abacusnbody/hod/abacus_hod.py b/abacusnbody/hod/abacus_hod.py
index bc5f1694..20e6c133 100644
--- a/abacusnbody/hod/abacus_hod.py
+++ b/abacusnbody/hod/abacus_hod.py
@@ -251,7 +251,7 @@ def staging(self):
         hid = np.empty([Nhalos_tot], dtype = int)
         hmultis = np.empty([Nhalos_tot])
         hrandoms = np.empty([Nhalos_tot])
-        hveldev = np.empty([Nhalos_tot])
+        hveldev = np.empty((Nhalos_tot, 3))
         hsigma3d = np.empty([Nhalos_tot])
         hc = np.empty([Nhalos_tot])
         hrvir = np.empty([Nhalos_tot])
@@ -536,12 +536,18 @@ def run_hod(self, tracers = None, want_rsd = True, want_nfw = False, NFW_draw =
             mtg = MTGenerator(np.random.PCG64(reseed))
             r1 = mtg.random(size=len(self.halo_data['hrandoms']), nthread=Nthread, dtype=np.float32)
             if self.want_expvel:
-                rt = mtg.random(size=len(self.halo_data['hrandoms']), nthread=Nthread, dtype=np.float32)
-                r2 = np.zeros(len(rt), dtype=np.float32)
+                rt0 = mtg.random(size=len(self.halo_data['hrandoms']), nthread=Nthread, dtype=np.float32)
+                rt1 = mtg.random(size=len(self.halo_data['hrandoms']), nthread=Nthread, dtype=np.float32)
+                rt2 = mtg.random(size=len(self.halo_data['hrandoms']), nthread=Nthread, dtype=np.float32)
+                rt = np.vstack((rt0, rt1, rt2)).T
+                r2 = np.zeros((len(rt), 3), dtype=np.float32)
                 r2[rt >= 0.5] = -np.log(2*(1-rt[rt >= 0.5]))
                 r2[rt < 0.5] = np.log(2*rt[rt < 0.5])
             else:
-                r2 = mtg.standard_normal(size=len(self.halo_data['hveldev']), nthread=Nthread, dtype=np.float32)
+                r20 = mtg.standard_normal(size=len(self.halo_data['hveldev']), nthread=Nthread, dtype=np.float32)
+                r21 = mtg.standard_normal(size=len(self.halo_data['hveldev']), nthread=Nthread, dtype=np.float32)
+                r22 = mtg.standard_normal(size=len(self.halo_data['hveldev']), nthread=Nthread, dtype=np.float32)
+                r2 = np.vstack((r20, r21, r22)).T
             r3 = mtg.random(size=len(self.particle_data['prandoms']), nthread=Nthread, dtype=np.float32)
             self.halo_data['hrandoms'] = r1
             self.halo_data['hveldev'] = r2*self.halo_data['hsigma3d']/np.sqrt(3)
diff --git a/abacusnbody/hod/prepare_sim.py b/abacusnbody/hod/prepare_sim.py
index 1ff32658..108f4559 100644
--- a/abacusnbody/hod/prepare_sim.py
+++ b/abacusnbody/hod/prepare_sim.py
@@ -624,10 +624,10 @@ def prepare_slab(i, savedir, simdir, simname, z_mock, z_type, tracer_flags, MT,
     halos['npstartA'] = halos_pstart_new
     halos['npoutA'] = halos_pnum_new
     halos['randoms'] = np.random.random(len(halos)) # attaching random numbers
-    halos['randoms_exp'] = (np.random.randint(0, 2, size = len(halos))*2-1)\
-    *np.random.exponential(scale = halos["sigmav3d_L2com"]/np.sqrt(3), size = len(halos)) # attaching random numbers
+    halos['randoms_exp'] = (np.random.randint(0, 2, size = (len(halos), 3))*2-1)\
+    *np.random.exponential(scale = np.repeat(halos["sigmav3d_L2com"], 3).reshape((-1, 3))/np.sqrt(3), size = (len(halos), 3)) # attaching random numbers
     halos['randoms_gaus_vrms'] = np.random.normal(loc = 0,
-        scale = halos["sigmav3d_L2com"]/np.sqrt(3), size = len(halos)) # attaching random numbers
+        scale = np.repeat(halos["sigmav3d_L2com"], 3).reshape((-1, 3))/np.sqrt(3), size = (len(halos), 3)) # attaching random numbers
 
     # output halo file
     print("outputting new halo file ")
diff --git a/tests/ref_hod/AbacusSummit_base_c000_ph001-abridged/z2.250/galaxies_rsd/ELGs.dat b/tests/ref_hod/AbacusSummit_base_c000_ph001-abridged/z2.250/galaxies_rsd/ELGs.dat
index c253086d..0366932f 100644
--- a/tests/ref_hod/AbacusSummit_base_c000_ph001-abridged/z2.250/galaxies_rsd/ELGs.dat
+++ b/tests/ref_hod/AbacusSummit_base_c000_ph001-abridged/z2.250/galaxies_rsd/ELGs.dat
@@ -20,4 +20,4 @@ x y z vx vy vz mass id
 -989.9779939780151 2595.872235514386 174.58946130616962 279.78515625 405.76171875 682.470703125 594760988767.7638 1364044
 -989.8491016637607 2700.924001600403 128.59961886324763 192.24267578125 -99.3597640991211 -54.88894271850586 4730669850376.221 1374058
 -989.9346596474115 2712.400836645169 79.9785797238952 346.61865234375 -133.11767578125 -166.9921875 491415994265.56366 1375036
--989.411052509211 2702.3862712400905 129.18043285068367 17.578125 143.5 -284.125 2389589362673.3203 1374059
+-989.8232582237715 2546.1908703460344 572.2576660921198 618.0 278.25 -720.5 15543930805739.074 1360581
diff --git a/tests/ref_hod/AbacusSummit_base_c000_ph001-abridged/z2.250/halos_xcom_0_seed600_abacushod_oldfenv_MT_new.h5 b/tests/ref_hod/AbacusSummit_base_c000_ph001-abridged/z2.250/halos_xcom_0_seed600_abacushod_oldfenv_MT_new.h5
index 2f3015aa7bc2825afae7fa88d6911eea3ad20f44..f8c62a676d880011d00a442bd0ed8465c6111aac 100644
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diff --git a/tests/ref_hod/Mini_N64_L32/z0.000/galaxies_rsd/ELGs.dat b/tests/ref_hod/Mini_N64_L32/z0.000/galaxies_rsd/ELGs.dat
index 3efc3bd4..d129fe64 100644
--- a/tests/ref_hod/Mini_N64_L32/z0.000/galaxies_rsd/ELGs.dat
+++ b/tests/ref_hod/Mini_N64_L32/z0.000/galaxies_rsd/ELGs.dat
@@ -19,7 +19,7 @@ x y z vx vy vz mass id
 -14.51835823059082 7.931110382080078 -3.584781303405762 163.04673767089844 139.01560974121094 56.981407165527344 1153534123340.0 110005000000
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+2.59500789642334 -1.3323520421981812 -4.824908256530762 149.4140625 -489.2578125 -41.015625 8553564348540.0 800060005000000
+5.8284478187561035 -14.30726432800293 3.406728744506836 35.15625 23.4375 -131.8359375 13145936047120.0 900000009001000
+9.458720207214355 -6.962368011474609 2.4301631450653076 -102.5390625 -219.7265625 -96.6796875 7791796531240.0 1100030009000000
+14.83135986328125 -8.420096397399902 -1.9180989265441895 43.9453125 -723.6328125 257.8125 28664234725260.0 1400030005000000
+15.219584465026855 -3.111072063446045 2.6929895877838135 -158.203125 -146.484375 -61.5234375 7748266941680.0 1400050008000000
+-15.85308837890625 0.3648959994316101 11.473132133483887 187.5 123.046875 146.484375 1991478722370.0 1400070012000000
diff --git a/tests/ref_hod/Mini_N64_L32/z0.000/galaxies_rsd/LRGs.dat b/tests/ref_hod/Mini_N64_L32/z0.000/galaxies_rsd/LRGs.dat
index 3c1df871..015d909f 100644
--- a/tests/ref_hod/Mini_N64_L32/z0.000/galaxies_rsd/LRGs.dat
+++ b/tests/ref_hod/Mini_N64_L32/z0.000/galaxies_rsd/LRGs.dat
@@ -17,9 +17,7 @@ x y z vx vy vz mass id
 -10.116243362426758 15.986204147338867 -3.991608905792236 21.652971267700195 -36.7679328918457 62.8034782409668 113372816009020.0 200000004000000
 -10.054981231689453 14.843656539916992 -6.802307395935059 59.38576889038086 774.992919921875 -205.86903381347656 21057438949650.0 200000004000002
 -9.820068359375 -11.208837509155273 -3.8385841178894045 120.56236267089844 -219.26451110839844 201.10247802734375 11197986914310.0 200020004000000
--5.8185882568359375 12.296954154968262 -5.730250625610351 35.3411865234375 51.90985107421875 307.4423522949219 18217133230860.0 400120003000000
+-5.8185882568359375 12.296954154968262 -5.730250625610352 35.3411865234375 51.90985107421875 307.4423522949219 18217133230860.0 400120003000000
 -2.2077879905700684 -9.597530364990234 -4.5027414989471435 -10.01099681854248 -50.52813720703125 14.57336711883545 89137717021490.0 600020004000000
 5.933405876159668 -4.835461139678955 -3.5339558601379393 -57.67539596557617 -31.752958297729492 152.32574462890625 7574148583440.0 1000050004000000
 14.92094898223877 -8.215825080871582 -4.828529033660889 -26.246870040893555 -41.75486755371094 -13.62411117553711 28664234725260.0 1400030005000000
--10.061663627624512 15.991519927978516 -6.071595668792725 292.96875 228.515625 -146.484375 113372816009020.0 200000004000000
--2.658751964569092 -9.830623626708984 -7.5551862716674805 -29.296875 -272.4609375 -275.390625 89137717021490.0 600020004000000
diff --git a/tests/ref_hod/Mini_N64_L32/z0.000/halos_xcom_0_seed600_abacushod_oldfenv_MT_new.h5 b/tests/ref_hod/Mini_N64_L32/z0.000/halos_xcom_0_seed600_abacushod_oldfenv_MT_new.h5
index f7664ad52075ca4286c12142971317a009368c08..9f5d8c31f023a4bd4912b63a3aded37169d42308 100644
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delta 1573
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diff --git a/tests/ref_hod/Mini_N64_L32/z0.000/halos_xcom_1_seed600_abacushod_oldfenv_MT_new.h5 b/tests/ref_hod/Mini_N64_L32/z0.000/halos_xcom_1_seed600_abacushod_oldfenv_MT_new.h5
index 772e4cd8e60ba17def90637246408952edc860bb..bb58f5a3e59348fb12bbd8315b7bee0256df6889 100644
GIT binary patch
delta 7686
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delta 1875
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F^M9FH0rda?

diff --git a/tests/ref_hod/Mini_N64_L32/z0.000/halos_xcom_2_seed600_abacushod_oldfenv_MT_new.h5 b/tests/ref_hod/Mini_N64_L32/z0.000/halos_xcom_2_seed600_abacushod_oldfenv_MT_new.h5
index af4da546a2eba6ae2b8c3a79df89a7fdfa178ca3..5c6b41d9431208ebaced91694578c6cf4cf6e464 100644
GIT binary patch
delta 4852
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zv&~BTU5x=X;b^TKQ||FD5wuVLB#ow$@vNjl=g$8^(0I~RWmA|16#Cai6leNVpY&P8
z$^|T5aZMfKn?wTsQ}RdgqI)y-Gkxvk?T%{mITtLeYWLId*#ebBrtzc`d*})?Ac<9T
z70H%HzDTcq@Jf9y9M*-1%CK@`F+F}EK&Uks-{!AOFVkbf{LN}1)658@Ub2yr_6g5a
z8#fdco>n#Ec7VUiGeXr;1g7w992s&CM~4}O^Ze_apl9-yN3RIGS2!7xM3?rA$-xN^
z=$$xOlVHb<zqPxsdg`r)#!35CM~4-#+mEMOP9z4}$V<XyQS61+$wpRRFLCX!(1*Mp
zm5(W2Bwo=E>AY9A5&JCa{vLLW#LJZ9P!4;5j5^6b8xa+Pl#vlh@Pymy4)XiL4blC2
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kqX2hGchml0%&K2v#NYJBJNAp3RYQu%(-)VMav%u)2V_d4g8%>k

delta 1201
zcmWO5dsGZq90%}e+Pb&n)pJTwrgvj1DWj%|tELyKX=P_nNYTr^c|<Sev2A3xm!Edo
zBa3s=4olkE#cFfz5m9oq*vjcRY#Ua4*3xo>PVN2g`}yPk^ZS19k2Pkew$=Gc-NWh?
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zZ$7S$0J)5zC`Z$@hR^-ss*K^Vc8k>U!&(lhjuclppBT2w&*bo4K!2rLmasmaz}HR`
zlX8Ww^6?4+!80k|U#^7yem#d?fwrvPz{4++2vBE=#!RZAV-;Co<-$;>t;43ipbR)I
zva#}JW37cNM9pI8zl4n~J`n-%MC702MsCObu7|SO3^P+@r@gxk0T)+_MrT}}7<Bs-
zF1a$ayX|;U$H8<+abxJttt)RHT*`pgZVaD&{pL=T|3VJ6b10VfZOffJn9M;br)bNT
zi^Y}s%i)%s;ozxp)m7se95%UA^u5btmg|uTQV)i+wN9#1uXF+@JSck4$KCqQZUBuZ
zLvCHVdy&Rv@X(Xt!P!U5Co4B`DD<M1m#jM4p16XocRoH-XS|Z{UcjN%n_~2*k4<73
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zvXW4WeyUrQGcV>dkcBZ+sysjNp*avtBA=BwM-3a+fKJU&N5K16Ue6c6KWc_`cAa|-
zG>yQQ;S`r(d2QlJ1p!|T#oD2?S);vTH8(UA?Ob}t!INx-^azGc{^s4)D?&L;Mo?VV
zH22%F>7uP;i^LCAABr~fB^<&QQyh}7s(t>|W)6J<Cg{F6xJbicJE1tCaALe?dJYHc
zB^1RtmGteJZ-5_`Fl6r*8NpVrg7`>=4(v29I3Jn<&mtMlnE`jp8pItdqA0$5VQ<Lp
z@>K-nT8cID!nTRwU=CLWe2>Nq-ny#euqK+~XFeCQZj*2VV*-C4Elg;Aw46gj48_LD
Kl&YdS1OFeA-s<-N

diff --git a/tests/ref_hod/Mini_N64_L32/z0.000/particles_xcom_0_seed600_abacushod_oldfenv_MT_new.h5 b/tests/ref_hod/Mini_N64_L32/z0.000/particles_xcom_0_seed600_abacushod_oldfenv_MT_new.h5
index 96b02cd6b6786da53767cc48ffde213768f3ad89..dc3b75db6dca7cce18549f63f28f26cfdc3798e9 100644
GIT binary patch
delta 3070
zcmXYzdt8iJAHYlA&SSHTNJ%oQyOME9E~(K)lUrvgky;fi&rpV}^0G;?!@eywzfuxL
z*p|g+S(R)?sB9aRZn~LtzmHwEw3~f@p2z$%-|y#~^Lu{he$-9c>L%?hDj-{T`_I2n
z(hPnAmi*Lx*I|5h9~2>%N#yA*6<5J=0!!k)Ps)2tdLa{e;q}a;5odn`Lw%M69dmhI
zAKVIZWR=ZZugubOFo=A0|GV$hR<9s*B1^UnPqj3Dp@te{ofP@I>E2!7If*5sW4l>z
zw<gF&c9u+Z3lx=sl>tkr_w7;1&AE_*JmeAQ95A&K$Yhq-r45uUsD2EQ$d?{=Pq2Jl
z4;{$ghs`)N=0YR*8M5S$s5s~7^hzi~-koq`z)8{rjz%o0ooqSbQF%LLB1hL0zMuJ`
z5)7xXWKaHrJ7<`7kRyLt`Z7#!tr`ZA?=B3T+%&BQLXBC{Rb>(AJkkm^$TM6=ot^F1
z51vz5V*b|hu{xj!vXNznbnkah#r#ch+y-+zXXU(t6y#&EI$t!T4FH+O644JyJ}q;e
zKqT@n#x13eO?}XTtWLdGY1Ebsex@u5QOE}j*K|P<vexwRD_i4Ug5z|SR6eaQwk;@t
zOypjd#*97r55Q1}b)qL$^*Fo$IkLt4;6yvS9vBp|%tg)a{VpbbE{QjdAm%g59FB+_
zoRR#Ba}9cA<?#mVmUhmAW>98!<|?-d%ey!)L-)5D=epOthI6qQWzrA2YVwY>a-M~L
zF>K`L-JkVvE;Ogi-ZcMb!{60&o`5br8-HG+>Hpvg3(EYNE3-DL@8pVQ=;4Lyl-ld6
zI9H>~d>1KxHo3w%wWN&Ql&-A!MSOh~`s_aQ=74uCT)D`KGCM=w>crYS<XnmVrCgnn
zc&C|jfi-2Wc9@kIJ>}DnL8r#4U~gK)m21#*?k@JPn|hP;AREdsr<a}xt+>s38M?Yh
z6<ZgZ#kqJU#v44o{6JF^=UM30mR*lMy1F?R+G71CFMZ(^K7ImvtD?mDl(g<cxx$Vz
zUSYN=ZUt(tx(vNGDNtx;pU1fxefm<RK*yG!4LXZ5@Aa~cjtcnnRp<eue%&W)<-&o;
z9@7^x|NQ;3gKMuucdxo7{`Cg`dBJST44XCRyRYWci$RZiz4*OBNiJ7kgD&xnYuuIm
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z<Q%^_ve2uwFK>`uY~#KsTtpe4=bx8XpWxdkpdWcT$(^~wO}An(Wj0<bG0@n4oPBgw
zJS%ZQ1HTv5=*fz^4NHIzN0(6M_jvs|y4M={?xQCS8Aa?n#it{3qKtft*$rk7-#sOI
z(c{hD1*sq6Pk{+by_uNQx|PGNnOysrrIh(6ySrn5KfgLO=$|C|6~Fv1zjuS2DRYeR
zk9l9o4{sUzn~L6y>(lw~i(M$0e{A#*wpUb;;=&ST{p+)_syjf$EQw!#UR!Nk3X#Yw
z|24}UYt{uFVwMrtH`qs?=2wqw8D&yqb8Ib6RCD>L(VghUhA9pF>Y=Wb0pZ4n2hs=l
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zTFsI)tI+cQT*E5|*-6{uNR)LWkTonBTU^J^3vPx;<a-T;vC?Vn(1Gl|DewC;R(R!m
zvt*gmm|brk_dpSHb@c8BhPUv_q%4uv&D=ALS9m6JaB;f*9i1*P{G27L&Y5WPgPwsL
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zdGY$h0w7yh(kb26K4@D4k;s4O?YX?qx&=Cr%km>eF^a3;w-p~X_w6!F*OWrhR+f=8
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zr|mGGkC??nC$xe|jkv(Y%R(1D3iVj^7k`HdrIdLPeeqwTrF^^u^d$YeHnx0x#SY4t
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U7zXYw_sG1j#r@PD|FyLK5A^a~hX4Qo

delta 3070
zcmXYze_V~%AHd7koJXuxd=<$`rPfHb=~}2eD>q4wpO+@PMD^5H-`Z@od~p+QqxI`U
zX_)+4Ni4A?Gj2<}QTip)54rumrK?LQ%6vbb)BWeZ->-9?^PJD;oacOwx>;Y{te;1X
zNQm@K_1L5*AT{ENy{+f@{^u%CAs=iHk1;F12_j>ji2rx{Oo~_wS;+Ez^|H60XMw2+
zPX@he&(?fh4GLuO+nb;LUXcU?$cH7`&!@$eLhuBh#O!?1<o59+s6)1&|8wP&nU6p+
z5&Mh{u-Mwr3kAqiy$VJTH@Ab`zj;#QS#h*f(+TOwFC|0cXC!t5nZ%Q2Dt=*`NDEQO
zx0{WpO2zHag-nCNp>I$FQd6GDo|k-?Iq^48A>Vp0{>GuAP7s;#Bu(z=Hv3{TWFa4(
zveRK!e<hes=E?Qdy>tA>_JIQV^1fW>k1C$P0J4!w;J$&@Um$o2Pkf_YGw#;khB{>N
zgQxYo?<+uJ&XXOmyIgM43I)i+RbOZCwtNV7Q+e`DTa-4_`w65YkN3T`v81#Jhy_oM
z$}|v1s~`%w_r+jV?Wn(@3t1Y{2PscGK{|~mp_2H>7<Ch<kpCA@JMNDHC5S%c$!}A>
z-?{EuD`X)%o}T_|+JrtZwd9Gz@mz;7`#V8_9CBwv{QSly7_j8Ig(rtk*S9?JNV#YR
zax2Q|9o2O0i$5i}4!t(0smSSmx!|(tlv}yfcbiRZi{Mr0h0*abp@CY##nzNFyuN;D
zWgQzY4}Dd#c)aSwU7_95hH|B$d+!e0mI$7VzRWG<czc8}UaBqS)ZHD$*_UdC<_L60
zeIJoHtWIz>dPCXJJpKE9g3}q4OK$AejyYZ^xDwsJI4sBgO10olc9i>PT%ny|bdTVf
z=<Rh!ElSoE32tOhxqO3Eo2kaEzZ`vfh+k00CtX6j4t=uyt&BTkSU9qeDCcb#miA~o
zOGg#DeD?I8AH26)=r4AloNSBPsRaGM1kXbcn%fwjv$jfb%a1ANJNb=kNvK-zWb~i*
zOm0z`w!ZV!nUt$Y+B>Hxu|{Z)K-UbFcTDY33a&;ko-q1qniZQKokh8rglPu*m$URJ
z(GAWSE*<N@R>R4Wa)T$VZhL%kU3fkdegEDud);c-_(roScepF=pPX@RLc1K@@64&?
zxwKnw9lCf_t4rPAR|J<iQSRxfU1wb%u=iJ?o4wk$<e@bSN9>HNTS)EW4n7w8=b?|{
z7teg-(JZ*73+3A8Boxymjo``Xn}1w9>y6*7cb@tQ<)V`G{g2&Y%@OF^!>_FTd6*5S
zMz3C_$<OU%t3f}doSRkrA^AwUl;|4rnN6n=TV1C)l-pqU;>hM3ESyaAjU8@#+!I;2
zMy{CdBaVk|*|OaxM^BmNd*Dzr8()Xs`GM~B4;5_l%0!fVW}vumsjNwueieFj<?9n|
zp2F&ZcrJ#&YDIy~D>nZ;^doIBU$mv2h5s4lwt42KRZB*~N1xOm?fhzXy%4?|<zi?3
zOL9%cHg^QNjef&4vz5KV<7)H^rW02bYDdDKN4a$uOxq9MW&M@tj+eiio8ZMZo6~&C
zJ?`;~@p;QuD-+%57n6Y4=rSB{G8ivd#(5?mnB*8;DU2^)Ksnv;$v2C%Y<fC$Ma{AP
zfi(7hnLFkBUiSJXIE{S!=>7+HZ2IOzr|`VkgAyO@%Z*z@Y9QT%Ck^NPb_6YG1tR82
z%fNxJ);F|46msstKfV1%_d=JL=X#Iu@-i8VC*pI;McA15yPrMJ;zbX-bSXvj;-TPl
zA?5njn+iqcES*YpA4$9pk~)NTr!OdHzE~kW-Ot9$L|2YKqCETOPeQwqCnY2(w{QC9
zRtWaQI@0UCWYkw$sPp8<+}aiUVfsl}<P}PcI!s#l=Z~SlizijO487HgOt4$TlU@C7
z_x@?@g>>Ys^e?Q8)h$3IJeh0Q@M*7GHAEqAFgK`AFvQT1#Z3_d+u|OA)SD-+iwu6O
zywn0J<ot?5CPQuaK(v@A2b%4T2JIh17P8k1kKyx&JHgZkd45^+g5?@eAkQ>ed8BSi
z8w?<iYI(b(+w~CyFX1^$pH0$Zwrpv1ODGre`@%5iosWc2WxkX+mpyQwXxs?}zC5`S
zvnlsnLnGKN<w@S|!q-=SIuGf{-;`djw&>RY@xyXxc&>JGQYAzoH^o>#E3B-BF60u=
zEjf0ET97W|$>Xz$Q}5o?fC@Qz^xIeulY9_So>;nUKec7nJ;*{HO{!*p@a;`7UCxv2
zVt+TQRb8M!HXE<A>maQ#fSkLlB5~{GHV9sUWxK>V?xLy%>X3g~68%@?+b)o-#N3~B
zA4=}Xfdb?XF6F4+a3|QU!ra%SeH%I41?k9|!Y^ta%=>_>=7~$YUWL|M4N<FkuHjp=
z*kw7wSDU(qay?UA9JTu!h15i#ukVN*EI%WBbf8{C$%DuQ_d|_UAd>P#FTW^Oe?lN+
zAwN5veSgEg2VlCEC(3TSNb8IyP$16;Xoz03TMYxq<9b9zKdjb5@H(C(x}9zq(t84R
z$QK4{OT7c?LE?{NM%Ct6&G{P&kiS$)`Za5N!0t<)_#byJJ}blOkDTUwG4=v!1hSsz
zH1gMx%hrsPi1oOO$wyU7=^yXrpBg~9$_dxB+c&Z12=o<8(`HPoXBAA1zGg$|72N@L
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zt$H|eCd<)h-cZR*R<QT!&=0pe7-R%qWjk*pC41iY|KVC9hP#m`AKzTn8tRIdwM{%J
zUe|CiAXE+M$lu9MSo_??a04+_8L$3pE5VgRF7IEv!$bNQx{#d$b0*c^%m?Xao<z>G
zk4wqIowpfR*Rg4B?Q>S*=oZR3Kfhw^V$D8!CAx#<tVVBkrh-!t)&%cM1>ybd!jXx-
zhgxmEVZjbPqhO5Za^_-ZUv{X-(I0hn9PkSqDS_w>y}xQRvhT6@La@RQTP}DS&&I1l
zkB^$0z1ZQt&@SdNUoRGv?eJhVBk!H-;<H_>S-vboDc2RYD6+Pf9iqwTmj^3yZOw(6
zl^TW@pqKLR29B}|OGFqYnb*#ln>#8&6~>dNB|DGJrEMVk58n9{XZHNoSr1vrSA*@>
zwENr#)2%#_bei`jJ9UEsSug!!!<!Nf3?RGAGvCu}t%l%mp7az*6YjaRLR~m-IVwEH
ZG)~dx;cXhQt=cQ=hMw?KkNoTD{U4dQdcXhx

diff --git a/tests/ref_hod/Mini_N64_L32/z0.000/particles_xcom_1_seed600_abacushod_oldfenv_MT_new.h5 b/tests/ref_hod/Mini_N64_L32/z0.000/particles_xcom_1_seed600_abacushod_oldfenv_MT_new.h5
index 9169777d2487b83cf55fa33bca23350ab2059969..70394f2ec82bde280f36d869051652b935e7e07f 100644
GIT binary patch
delta 3337
zcmXYz3pi9;8-R(^+7*9Nol%L=#dNyr!l;B$6BRp$Mi(8IGPYDWMJ4B`oTi+JzL4@u
zlA%<((v^^Ll-y!m!XU=Ii=va%|NVQKXP#%?_gT;E{jIgW?^`Q#STz&Bv=%icIp%#r
zLyJZ9O&##lqA8oU&R1G#O{~k&H+NL`9zRsZIz5i2x*fOOQWv(eo{P@)S;ns}Jj1$?
zHce$-S;-95++aOPn<jEsE#s(zIWVZrkSN7{hwt(X5RGTZfYHeqy-QUfL!NaeWsKwO
ze?TySA$7Ztt9{zl16jyo=a_CcuO8q{WJr2;Jf}0I72=S~7S|q{;g$;IXMAST!HoAu
zQy~a>iDdDKrVCY|Ku(KHkNoVH4MGk>CY+cM?`ZHEq{!daaja~HYJji9P+A5qm$%GK
zRnA3+CVe`lccz?u4V*~~+3(uC%Fn3|#K<T4ZU30we*uHYDw}O(^5YF4n#_>w;nAyZ
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z=V3Oa7p>7fR?T`Yda~89^UVi8c7Hxil|8eTovBV?$CJ<vrx!nQ_k6{=)&iQ+nc42D
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zeA3K_f0zq#$l4*Ab9)<mfGlFj8GoM&^I6Xz2szuX$bEOnQ&1ouu<;0)72XHJ#SA%T
z@VuS5R}WI;($=Cc!_6JQUxHO{d(%Pdr!<ftM>#vH1eV+Zjxj^Ro;dzi{I3+m$WA(~
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z4_V0O+QtQ*iCw_kf*pceYBKk23B)0v&ADs8Us3^NE5@|q{f<8$_CgS{tD0KA2WE!?
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zrAK+v#L;SPNKRZ0C_J&t^i$sB)N4Svogt6^y6SM5Y6B^<i`yEHmX623-+?hkL>*o&
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t<8L4fxk<eA`jN_Z;QhgHDVMX6(AZ)Tpeyy)m6qpl|NrBkk)!hC^FQ=B`vU*~

delta 3337
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z@`=vEzuLK+qQa8IG;6z}t3@!NLP==e*9#hvQt+HaNuA}(n)>ECkf0&f?pfZiO(2*|
ziQmRVUDl!nMCkp&Dnli|Jpr95lmtA_{irDIf&_H-=01z~Wlw=jrR1;H(K#)lWe|iu
zy4NV9X-6~2(89E}=l}jq297*R%$7b2OP-$$VsvM?ZqVYB?Z8*143+HH7^T`M?~5u+
zbU&`2Rq(D8cxsdcZpcu`zts*x^aEy1OHNB844^Ce?d-=NYX;A0l%zD=7`*o&79{9)
z%R-C0T8$u>PKmMFcN5K{Js?7#+kZCPs<9b#)G1lK^62oDka|c!Z+H=PAWgdihz2Eg
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z&7qHLK!ongKD}n6UIFNsQnD{##qXt29gu)7`7`jRxa4jiW|UYn=Hn)Z;rOE$&h|1?
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zw6V(*{_ZxApcTS)UWjH2K(LV#p3T6$V_(}rw2?BYA-xiQS1-4u%^YxtiZ3HGmF{sl
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zIzWi7vNJ8r4DN;j^soJ^W~sS!gQp86$+RfK;g%F6XtQaHp3HE{0f8%J0)3pDUTDhu
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zf{r^sXMopH4uW4Oqv)mh;q0*d0#f!1%NT#^oTwf5--)UQ=DzmK#06F-VTJrIoaM_h
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z=M#(DAoi!keW^rC{iPK60XU2$b+4N|svsTRWiHhae8(&6eo8ESwbi|pyFrMqF*01)
zdlav%=-|?2nFqXIf#(7I4E=1D8CE?22|9bh_#+#3zXL%aUZdCOJB0C@L4=O5tv8+=
zpAI@fl#G$i4Ro@rf&{e3*zB#QK8-+vaW^r%SYdt&4?=Vz@9FxSs5c-(dks?8K+Ps_
zJV?ng+m}JiP!ovJPY!1_T-NIXehAiEeK0;F{tcv~6OTUIJ>T*U@Ion(jo)U#9+80%
zeMae&+N7tr5u?S4owkSD+QIV>E|D8?fhUaKfCPPVhpOwdXgtWnDEV01(7a2p6-4Op
p-$(k0vg<)7oN8vSQM&RbvBT6~UF@eWew(lP-ygr5`3nF4`5z28`fLCI

diff --git a/tests/ref_hod/Mini_N64_L32/z0.000/particles_xcom_2_seed600_abacushod_oldfenv_MT_new.h5 b/tests/ref_hod/Mini_N64_L32/z0.000/particles_xcom_2_seed600_abacushod_oldfenv_MT_new.h5
index 022057fddafd709b414c1c3a547524bc4347e913..089212e3fc6c343efc0e477f4fbb202748d2015e 100644
GIT binary patch
delta 1677
zcmXZcc~DbF9KdlXCHq9M%3+9{Y9w+*L5+cy6!0KQtv<nucC_LdH`U4%ZK|Nfqu?#_
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z(*AzX5%+jFTs?KB8)BIlS;?+0jb2>=3gR`PG4-b&D1h&Z(Y){8CfByBKt{a8XfrdB
zp#mlgGvdar4Ph;Y6qXn*dNk&QIH4F!ER0^QYskseX+Sgyqx26}#icm3fs*(q<BB}5
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z!l<&m^kR^c0%XJsIDOp5l@EdGjgfy}O;Dyv4XMQ3?cR?2zSV<?xM3oHxG=OAM3XUk
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z=}%~?`<wL_y>1Vh|E`jB<=0mPg-5f@9T>VCajvCqVYiqwCzPfVyV@4XTYJnsUO-bT
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zqlfvp(?LH7(lE@35k{@~JOCKsVkFb&$rg-#36gN~7ApLro;bFHj<`Yd1+Oiq17agE
zqmDOMXI~E05n|-m^doCS(sSU?BZtLURRB~}fsA<BZtcl>pFv>GC+E;`bx-+V1Edm%
z8}~oTdvXp;#0M60Uqx}$AX<RYBAz=hL)r|=1(;gB>rBDLe#>);TSz1CVzeQeSqk!n
z<S>xm`6a!6H*g{`@|u6+H5B%Olvri^himzu5|9v6R)QVBMy6Xfb()a&u32Ii6l>cY
RmT~^wRd(<FXPDLd>wkZ4_ALMa

delta 1677
zcmXYydsK{R9LFo^c{^v$*_3plgf1IW2~(Ps6~nQ+-c)9@v6H1aPq7L|<Tk{#v^v$V
za~j2NRuqy_3~D8vE<$Q+ny#AC%%uC$ZI8?D&zt9;_wzZ=`^WQrp6~O%(j<Lpl72pG
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zf9wwEke#D;uMxEAKx9El)TehFe{$=GD&(z0<p<ltG{CpS_16RhJge@4Y-B-7{U;m!
zI<T;!Mi1&{*B#seGOGyE9^;$nJfj&VtSI@gbJcr#pcy3Alql^Mb-&HffC^a}-Td3Z
z;Q|oOrX=@K_2!`9Mo=J2=dO~m9v8uB4kd}lWqaK!wUCC)#@#$|Oz;AT4JF;#3w}@a
z>4z8_${dQ%30p3!@J%kTOtEE|_J-2nJI@<FD@56{#6FqVkn*|}s%$CwcF$z+L){zT
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diff --git a/tests/test_hod.py b/tests/test_hod.py
index f692bba5..0d6d85d8 100644
--- a/tests/test_hod.py
+++ b/tests/test_hod.py
@@ -6,7 +6,7 @@
 To run the tests, use:
     $ pytest tests/test_hod.py
 
-To generate new reference, run:
+To generate new reference, run with reference_mode = True:
     $ python tests/test_hod.py
 from base directory
 """