-
Notifications
You must be signed in to change notification settings - Fork 0
/
mainwindow.py
513 lines (506 loc) · 31.8 KB
/
mainwindow.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
# -*- coding: utf-8 -*-
# Form implementation generated from reading ui file 'mainwindow.ui'
#
# Created by: PyQt5 UI code generator 5.15.2
#
# WARNING: Any manual changes made to this file will be lost when pyuic5 is
# run again. Do not edit this file unless you know what you are doing.
from PyQt5 import QtCore, QtGui, QtWidgets
class Ui_BRACNAC(object):
def setupUi(self, BRACNAC):
BRACNAC.setObjectName("BRACNAC")
BRACNAC.resize(800, 404)
BRACNAC.setMaximumSize(QtCore.QSize(800, 404))
self.centralWidget = QtWidgets.QWidget(BRACNAC)
sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.centralWidget.sizePolicy().hasHeightForWidth())
self.centralWidget.setSizePolicy(sizePolicy)
self.centralWidget.setObjectName("centralWidget")
self.verticalLayout = QtWidgets.QVBoxLayout(self.centralWidget)
self.verticalLayout.setContentsMargins(11, 11, 11, 11)
self.verticalLayout.setSpacing(6)
self.verticalLayout.setObjectName("verticalLayout")
self.horizontalLayout = QtWidgets.QHBoxLayout()
self.horizontalLayout.setSpacing(6)
self.horizontalLayout.setObjectName("horizontalLayout")
self.input_file_text = QtWidgets.QLineEdit(self.centralWidget)
self.input_file_text.setEnabled(True)
self.input_file_text.setMinimumSize(QtCore.QSize(200, 25))
self.input_file_text.setMaximumSize(QtCore.QSize(300, 20))
self.input_file_text.setObjectName("input_file_text")
self.horizontalLayout.addWidget(self.input_file_text)
self.label = QtWidgets.QLabel(self.centralWidget)
self.label.setMaximumSize(QtCore.QSize(300, 30))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label.setFont(font)
self.label.setObjectName("label")
self.horizontalLayout.addWidget(self.label)
self.input_file_button = QtWidgets.QPushButton(self.centralWidget)
self.input_file_button.setMaximumSize(QtCore.QSize(120, 30))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.input_file_button.setFont(font)
self.input_file_button.setObjectName("input_file_button")
self.horizontalLayout.addWidget(self.input_file_button)
self.verticalLayout.addLayout(self.horizontalLayout)
self.horizontalLayout_2 = QtWidgets.QHBoxLayout()
self.horizontalLayout_2.setSpacing(6)
self.horizontalLayout_2.setObjectName("horizontalLayout_2")
self.amplicon_file_text = QtWidgets.QLineEdit(self.centralWidget)
self.amplicon_file_text.setEnabled(True)
self.amplicon_file_text.setMinimumSize(QtCore.QSize(200, 25))
self.amplicon_file_text.setMaximumSize(QtCore.QSize(300, 20))
self.amplicon_file_text.setObjectName("amplicon_file_text")
self.horizontalLayout_2.addWidget(self.amplicon_file_text)
self.label_2 = QtWidgets.QLabel(self.centralWidget)
self.label_2.setMaximumSize(QtCore.QSize(300, 30))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_2.setFont(font)
self.label_2.setScaledContents(False)
self.label_2.setObjectName("label_2")
self.horizontalLayout_2.addWidget(self.label_2)
self.amplicon_file_button = QtWidgets.QPushButton(self.centralWidget)
self.amplicon_file_button.setMaximumSize(QtCore.QSize(120, 16777215))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.amplicon_file_button.setFont(font)
self.amplicon_file_button.setObjectName("amplicon_file_button")
self.horizontalLayout_2.addWidget(self.amplicon_file_button)
self.verticalLayout.addLayout(self.horizontalLayout_2)
self.horizontalLayout_3 = QtWidgets.QHBoxLayout()
self.horizontalLayout_3.setContentsMargins(-1, 0, -1, -1)
self.horizontalLayout_3.setSpacing(6)
self.horizontalLayout_3.setObjectName("horizontalLayout_3")
self.patients_table_text = QtWidgets.QLineEdit(self.centralWidget)
self.patients_table_text.setEnabled(True)
sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Fixed, QtWidgets.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.patients_table_text.sizePolicy().hasHeightForWidth())
self.patients_table_text.setSizePolicy(sizePolicy)
self.patients_table_text.setMinimumSize(QtCore.QSize(0, 25))
self.patients_table_text.setMaximumSize(QtCore.QSize(300, 25))
self.patients_table_text.setObjectName("patients_table_text")
self.horizontalLayout_3.addWidget(self.patients_table_text)
self.label_3 = QtWidgets.QLabel(self.centralWidget)
self.label_3.setMaximumSize(QtCore.QSize(300, 30))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_3.setFont(font)
self.label_3.setObjectName("label_3")
self.horizontalLayout_3.addWidget(self.label_3)
self.patients_table_button = QtWidgets.QPushButton(self.centralWidget)
self.patients_table_button.setMaximumSize(QtCore.QSize(120, 30))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.patients_table_button.setFont(font)
self.patients_table_button.setObjectName("patients_table_button")
self.horizontalLayout_3.addWidget(self.patients_table_button)
self.verticalLayout.addLayout(self.horizontalLayout_3)
self.horizontalLayout_4 = QtWidgets.QHBoxLayout()
self.horizontalLayout_4.setContentsMargins(-1, -1, -1, 0)
self.horizontalLayout_4.setSpacing(6)
self.horizontalLayout_4.setObjectName("horizontalLayout_4")
self.output_file_text = QtWidgets.QLineEdit(self.centralWidget)
self.output_file_text.setEnabled(True)
self.output_file_text.setMaximumSize(QtCore.QSize(300, 25))
self.output_file_text.setBaseSize(QtCore.QSize(220, 0))
self.output_file_text.setObjectName("output_file_text")
self.horizontalLayout_4.addWidget(self.output_file_text)
self.label_4 = QtWidgets.QLabel(self.centralWidget)
self.label_4.setMaximumSize(QtCore.QSize(300, 30))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_4.setFont(font)
self.label_4.setObjectName("label_4")
self.horizontalLayout_4.addWidget(self.label_4)
self.output_file_button = QtWidgets.QPushButton(self.centralWidget)
self.output_file_button.setMaximumSize(QtCore.QSize(120, 30))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.output_file_button.setFont(font)
self.output_file_button.setObjectName("output_file_button")
self.horizontalLayout_4.addWidget(self.output_file_button)
self.verticalLayout.addLayout(self.horizontalLayout_4)
self.horizontalLayout_5 = QtWidgets.QHBoxLayout()
self.horizontalLayout_5.setContentsMargins(-1, -1, -1, 0)
self.horizontalLayout_5.setSpacing(6)
self.horizontalLayout_5.setObjectName("horizontalLayout_5")
self.reference_version_box = QtWidgets.QComboBox(self.centralWidget)
self.reference_version_box.setMaximumSize(QtCore.QSize(100, 100))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.reference_version_box.setFont(font)
self.reference_version_box.setObjectName("reference_version_box")
self.reference_version_box.addItem("")
self.reference_version_box.addItem("")
self.horizontalLayout_5.addWidget(self.reference_version_box)
self.label_5 = QtWidgets.QLabel(self.centralWidget)
self.label_5.setMaximumSize(QtCore.QSize(200, 30))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_5.setFont(font)
self.label_5.setObjectName("label_5")
self.horizontalLayout_5.addWidget(self.label_5)
self.clust_box = QtWidgets.QCheckBox(self.centralWidget)
self.clust_box.setMaximumSize(QtCore.QSize(200, 30))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.clust_box.setFont(font)
self.clust_box.setObjectName("clust_box")
self.horizontalLayout_5.addWidget(self.clust_box)
self.verticalLayout.addLayout(self.horizontalLayout_5)
self.horizontalLayout_6 = QtWidgets.QHBoxLayout()
self.horizontalLayout_6.setContentsMargins(-1, -1, -1, 0)
self.horizontalLayout_6.setSpacing(0)
self.horizontalLayout_6.setObjectName("horizontalLayout_6")
self.Hscores_threshold_text = QtWidgets.QLineEdit(self.centralWidget)
self.Hscores_threshold_text.setMaximumSize(QtCore.QSize(65, 25))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.Hscores_threshold_text.setFont(font)
self.Hscores_threshold_text.setAlignment(QtCore.Qt.AlignCenter)
self.Hscores_threshold_text.setObjectName("Hscores_threshold_text")
self.horizontalLayout_6.addWidget(self.Hscores_threshold_text)
self.label_7 = QtWidgets.QLabel(self.centralWidget)
self.label_7.setMaximumSize(QtCore.QSize(155, 16777215))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_7.setFont(font)
self.label_7.setObjectName("label_7")
self.horizontalLayout_6.addWidget(self.label_7)
self.Hpvalue_text = QtWidgets.QLineEdit(self.centralWidget)
self.Hpvalue_text.setMaximumSize(QtCore.QSize(65, 25))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.Hpvalue_text.setFont(font)
self.Hpvalue_text.setAlignment(QtCore.Qt.AlignCenter)
self.Hpvalue_text.setObjectName("Hpvalue_text")
self.horizontalLayout_6.addWidget(self.Hpvalue_text)
self.label_6 = QtWidgets.QLabel(self.centralWidget)
self.label_6.setMaximumSize(QtCore.QSize(160, 16777215))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_6.setFont(font)
self.label_6.setObjectName("label_6")
self.horizontalLayout_6.addWidget(self.label_6)
self.permutations_number_text = QtWidgets.QLineEdit(self.centralWidget)
self.permutations_number_text.setEnabled(True)
self.permutations_number_text.setMaximumSize(QtCore.QSize(65, 25))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.permutations_number_text.setFont(font)
self.permutations_number_text.setAlignment(QtCore.Qt.AlignCenter)
self.permutations_number_text.setObjectName("permutations_number_text")
self.horizontalLayout_6.addWidget(self.permutations_number_text)
self.label_8 = QtWidgets.QLabel(self.centralWidget)
self.label_8.setMaximumSize(QtCore.QSize(200, 100))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_8.setFont(font)
self.label_8.setObjectName("label_8")
self.horizontalLayout_6.addWidget(self.label_8)
self.verticalLayout.addLayout(self.horizontalLayout_6)
self.horizontalLayout_7 = QtWidgets.QHBoxLayout()
self.horizontalLayout_7.setContentsMargins(-1, -1, -1, 0)
self.horizontalLayout_7.setSpacing(0)
self.horizontalLayout_7.setObjectName("horizontalLayout_7")
self.minimal_score_text = QtWidgets.QLineEdit(self.centralWidget)
self.minimal_score_text.setMaximumSize(QtCore.QSize(65, 25))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.minimal_score_text.setFont(font)
self.minimal_score_text.setAlignment(QtCore.Qt.AlignCenter)
self.minimal_score_text.setObjectName("minimal_score_text")
self.horizontalLayout_7.addWidget(self.minimal_score_text)
self.label_9 = QtWidgets.QLabel(self.centralWidget)
self.label_9.setMaximumSize(QtCore.QSize(155, 16777215))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_9.setFont(font)
self.label_9.setObjectName("label_9")
self.horizontalLayout_7.addWidget(self.label_9)
self.maximal_p_value_text = QtWidgets.QLineEdit(self.centralWidget)
self.maximal_p_value_text.setMaximumSize(QtCore.QSize(65, 25))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.maximal_p_value_text.setFont(font)
self.maximal_p_value_text.setAlignment(QtCore.Qt.AlignCenter)
self.maximal_p_value_text.setObjectName("maximal_p_value_text")
self.horizontalLayout_7.addWidget(self.maximal_p_value_text)
self.label_10 = QtWidgets.QLabel(self.centralWidget)
self.label_10.setMaximumSize(QtCore.QSize(160, 16777215))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_10.setFont(font)
self.label_10.setObjectName("label_10")
self.horizontalLayout_7.addWidget(self.label_10)
self.minimal_median_coverage_text = QtWidgets.QLineEdit(self.centralWidget)
self.minimal_median_coverage_text.setMaximumSize(QtCore.QSize(65, 25))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.minimal_median_coverage_text.setFont(font)
self.minimal_median_coverage_text.setAlignment(QtCore.Qt.AlignCenter)
self.minimal_median_coverage_text.setObjectName("minimal_median_coverage_text")
self.horizontalLayout_7.addWidget(self.minimal_median_coverage_text)
self.label_11 = QtWidgets.QLabel(self.centralWidget)
self.label_11.setMaximumSize(QtCore.QSize(200, 30))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_11.setFont(font)
self.label_11.setObjectName("label_11")
self.horizontalLayout_7.addWidget(self.label_11)
self.verticalLayout.addLayout(self.horizontalLayout_7)
self.horizontalLayout_10 = QtWidgets.QHBoxLayout()
self.horizontalLayout_10.setContentsMargins(-1, -1, -1, 0)
self.horizontalLayout_10.setSpacing(0)
self.horizontalLayout_10.setObjectName("horizontalLayout_10")
self.exonCoveredWhole_text = QtWidgets.QLineEdit(self.centralWidget)
self.exonCoveredWhole_text.setMaximumSize(QtCore.QSize(65, 25))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.exonCoveredWhole_text.setFont(font)
self.exonCoveredWhole_text.setAlignment(QtCore.Qt.AlignCenter)
self.exonCoveredWhole_text.setObjectName("exonCoveredWhole_text")
self.horizontalLayout_10.addWidget(self.exonCoveredWhole_text)
self.label_14 = QtWidgets.QLabel(self.centralWidget)
self.label_14.setMaximumSize(QtCore.QSize(155, 16777215))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_14.setFont(font)
self.label_14.setObjectName("label_14")
self.horizontalLayout_10.addWidget(self.label_14)
self.exonCoveredPart_text = QtWidgets.QLineEdit(self.centralWidget)
self.exonCoveredPart_text.setMaximumSize(QtCore.QSize(65, 25))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.exonCoveredPart_text.setFont(font)
self.exonCoveredPart_text.setAlignment(QtCore.Qt.AlignCenter)
self.exonCoveredPart_text.setObjectName("exonCoveredPart_text")
self.horizontalLayout_10.addWidget(self.exonCoveredPart_text)
self.label_13 = QtWidgets.QLabel(self.centralWidget)
self.label_13.setMaximumSize(QtCore.QSize(160, 16777215))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_13.setFont(font)
self.label_13.setObjectName("label_13")
self.horizontalLayout_10.addWidget(self.label_13)
self.exonNonCovered_text = QtWidgets.QLineEdit(self.centralWidget)
self.exonNonCovered_text.setMaximumSize(QtCore.QSize(65, 25))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.exonNonCovered_text.setFont(font)
self.exonNonCovered_text.setAlignment(QtCore.Qt.AlignCenter)
self.exonNonCovered_text.setObjectName("exonNonCovered_text")
self.horizontalLayout_10.addWidget(self.exonNonCovered_text)
self.label_12 = QtWidgets.QLabel(self.centralWidget)
self.label_12.setMaximumSize(QtCore.QSize(200, 16777215))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_12.setFont(font)
self.label_12.setObjectName("label_12")
self.horizontalLayout_10.addWidget(self.label_12)
self.verticalLayout.addLayout(self.horizontalLayout_10)
self.horizontalLayout_11 = QtWidgets.QHBoxLayout()
self.horizontalLayout_11.setContentsMargins(-1, -1, -1, 0)
self.horizontalLayout_11.setSpacing(0)
self.horizontalLayout_11.setObjectName("horizontalLayout_11")
self.delTh1_text = QtWidgets.QLineEdit(self.centralWidget)
self.delTh1_text.setMaximumSize(QtCore.QSize(65, 25))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.delTh1_text.setFont(font)
self.delTh1_text.setAlignment(QtCore.Qt.AlignCenter)
self.delTh1_text.setObjectName("delTh1_text")
self.horizontalLayout_11.addWidget(self.delTh1_text)
self.label_15 = QtWidgets.QLabel(self.centralWidget)
self.label_15.setMaximumSize(QtCore.QSize(65, 30))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_15.setFont(font)
self.label_15.setObjectName("label_15")
self.horizontalLayout_11.addWidget(self.label_15)
self.delTh2_text = QtWidgets.QLineEdit(self.centralWidget)
self.delTh2_text.setMaximumSize(QtCore.QSize(65, 25))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.delTh2_text.setFont(font)
self.delTh2_text.setAlignment(QtCore.Qt.AlignCenter)
self.delTh2_text.setObjectName("delTh2_text")
self.horizontalLayout_11.addWidget(self.delTh2_text)
self.label_16 = QtWidgets.QLabel(self.centralWidget)
self.label_16.setMaximumSize(QtCore.QSize(65, 16777215))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_16.setFont(font)
self.label_16.setObjectName("label_16")
self.horizontalLayout_11.addWidget(self.label_16)
self.duplTh1_text = QtWidgets.QLineEdit(self.centralWidget)
self.duplTh1_text.setMaximumSize(QtCore.QSize(65, 25))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.duplTh1_text.setFont(font)
self.duplTh1_text.setAlignment(QtCore.Qt.AlignCenter)
self.duplTh1_text.setObjectName("duplTh1_text")
self.horizontalLayout_11.addWidget(self.duplTh1_text)
self.label_17 = QtWidgets.QLabel(self.centralWidget)
self.label_17.setMaximumSize(QtCore.QSize(65, 16777215))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_17.setFont(font)
self.label_17.setObjectName("label_17")
self.horizontalLayout_11.addWidget(self.label_17)
self.duplTh2_text = QtWidgets.QLineEdit(self.centralWidget)
self.duplTh2_text.setMaximumSize(QtCore.QSize(65, 25))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.duplTh2_text.setFont(font)
self.duplTh2_text.setAlignment(QtCore.Qt.AlignCenter)
self.duplTh2_text.setObjectName("duplTh2_text")
self.horizontalLayout_11.addWidget(self.duplTh2_text)
self.label_18 = QtWidgets.QLabel(self.centralWidget)
self.label_18.setMaximumSize(QtCore.QSize(65, 16777215))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.label_18.setFont(font)
self.label_18.setObjectName("label_18")
self.horizontalLayout_11.addWidget(self.label_18)
## font = QtGui.QFont()
## font.setFamily("Liberation Sans")
## self.delta.setFont(font)
## self.delta.setObjectName("delta")
## self.horizontalLayout_11.addWidget(self.delta)
self.verticalLayout.addLayout(self.horizontalLayout_11)
spacerItem = QtWidgets.QSpacerItem(20, 40, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding)
self.verticalLayout.addItem(spacerItem)
self.horizontalLayout_9 = QtWidgets.QHBoxLayout()
self.horizontalLayout_9.setContentsMargins(12, -1, 12, 0)
self.horizontalLayout_9.setSpacing(6)
self.horizontalLayout_9.setObjectName("horizontalLayout_9")
self.progressBar = QtWidgets.QProgressBar(self.centralWidget)
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.progressBar.setFont(font)
self.progressBar.setProperty("value", 0)
self.progressBar.setObjectName("progressBar")
self.horizontalLayout_9.addWidget(self.progressBar)
self.verticalLayout.addLayout(self.horizontalLayout_9)
spacerItem1 = QtWidgets.QSpacerItem(20, 30, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding)
self.verticalLayout.addItem(spacerItem1)
self.horizontalLayout_8 = QtWidgets.QHBoxLayout()
self.horizontalLayout_8.setContentsMargins(-1, -1, -1, 0)
self.horizontalLayout_8.setSpacing(6)
self.horizontalLayout_8.setObjectName("horizontalLayout_8")
spacerItem2 = QtWidgets.QSpacerItem(300, 0, QtWidgets.QSizePolicy.Fixed, QtWidgets.QSizePolicy.Minimum)
self.horizontalLayout_8.addItem(spacerItem2)
self.start_button = QtWidgets.QPushButton(self.centralWidget)
sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Fixed, QtWidgets.QSizePolicy.Fixed)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.start_button.sizePolicy().hasHeightForWidth())
self.start_button.setSizePolicy(sizePolicy)
self.start_button.setMaximumSize(QtCore.QSize(250, 30))
font = QtGui.QFont()
font.setFamily("Liberation Sans")
self.start_button.setFont(font)
self.start_button.setObjectName("start_button")
self.horizontalLayout_8.addWidget(self.start_button)
spacerItem3 = QtWidgets.QSpacerItem(300, 30, QtWidgets.QSizePolicy.Fixed, QtWidgets.QSizePolicy.Minimum)
self.horizontalLayout_8.addItem(spacerItem3)
self.verticalLayout.addLayout(self.horizontalLayout_8)
BRACNAC.setCentralWidget(self.centralWidget)
self.statusBar = QtWidgets.QStatusBar(BRACNAC)
self.statusBar.setObjectName("statusBar")
BRACNAC.setStatusBar(self.statusBar)
self.retranslateUi(BRACNAC)
QtCore.QMetaObject.connectSlotsByName(BRACNAC)
def retranslateUi(self, BRACNAC):
_translate = QtCore.QCoreApplication.translate
BRACNAC.setWindowTitle(_translate("BRACNAC", "BRACNAC"))
self.input_file_text.setProperty("html", _translate("BRACNAC", "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.0//EN\" \"http://www.w3.org/TR/REC-html40/strict.dtd\">\n"
"<html><head><meta name=\"qrichtext\" content=\"1\" /><style type=\"text/css\">\n"
"p, li { white-space: pre-wrap; }\n"
"</style></head><body style=\" font-family:\'Ubuntu\'; font-size:11pt; font-weight:400; font-style:normal;\">\n"
"<p style=\"-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;\"><br /></p></body></html>"))
self.label.setToolTip(_translate("BRACNAC", "<html><head/><body><p>File with amplicon coverages with following columns: Patient#, Patient_ID, Barcodes, Median_Coverage, Number_<30, amplicon#1... (Patient_ID, Barcodes, Median_Coverage, Number_<30 are optional columns)</p></body></html>"))
self.label.setWhatsThis(_translate("BRACNAC", "<html><head/><body><p>File with amplicon coverages</p><p><br/></p></body></html>"))
self.label.setText(_translate("BRACNAC", "Input file (.tsv ) *"))
self.input_file_button.setText(_translate("BRACNAC", "Choose file"))
self.amplicon_file_text.setProperty("html", _translate("BRACNAC", "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.0//EN\" \"http://www.w3.org/TR/REC-html40/strict.dtd\">\n"
"<html><head><meta name=\"qrichtext\" content=\"1\" /><style type=\"text/css\">\n"
"p, li { white-space: pre-wrap; }\n"
"</style></head><body style=\" font-family:\'Ubuntu\'; font-size:11pt; font-weight:400; font-style:normal;\">\n"
"<p style=\"-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;\"><br /></p></body></html>"))
self.label_2.setToolTip(_translate("BRACNAC", "<html><head/><body><p>TSV-file with coordinates for each amplicon and numbers of multiplexes. First column is a number of amplicon, second - number of chromosome, next two - coordinates, and last - number of multiplex.</p></body></html>"))
self.label_2.setWhatsThis(_translate("BRACNAC", "<html><head/><body><p>TSV-file with coordinates for each amplicon and numbers of multiplexes</p></body></html>"))
self.label_2.setText(_translate("BRACNAC", "Amplicon coordinates (.tsv/ .bed) *"))
self.amplicon_file_button.setText(_translate("BRACNAC", "Choose file"))
self.label_3.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Optional TSV-file with patient IDs and names. Column names are required (Patient_num, Patient_ID, Barcode_1, Barcode_2)</p></body></html>"))
self.label_3.setWhatsThis(_translate("BRACNAC", "<html><head/><body><p>TSV-file with patient IDs and names. Column names are required</p></body></html>"))
self.label_3.setText(_translate("BRACNAC", "Patients table ( .tsv/ .xls)"))
self.patients_table_button.setText(_translate("BRACNAC", "Choose file"))
self.output_file_text.setProperty("html", _translate("BRACNAC", "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.0//EN\" \"http://www.w3.org/TR/REC-html40/strict.dtd\">\n"
"<html><head><meta name=\"qrichtext\" content=\"1\" /><style type=\"text/css\">\n"
"p, li { white-space: pre-wrap; }\n"
"</style></head><body style=\" font-family:\'Ubuntu\'; font-size:11pt; font-weight:400; font-style:normal;\">\n"
"<p style=\"-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;\"><br /></p></body></html>"))
self.label_4.setText(_translate("BRACNAC", "Output file (.xls)"))
self.output_file_button.setText(_translate("BRACNAC", "Choose file"))
self.reference_version_box.setItemText(0, _translate("BRACNAC", "hg19"))
self.reference_version_box.setItemText(1, _translate("BRACNAC", "hg38"))
self.label_5.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Version of the reference genome</p></body></html>"))
self.label_5.setWhatsThis(_translate("BRACNAC", "<html><head/><body><p>Version of the reference genome</p></body></html>"))
self.label_5.setText(_translate("BRACNAC", "Reference version"))
self.clust_box.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Use this parameter if you do not want to clusterize samples during normalization</p></body></html>"))
self.clust_box.setWhatsThis(_translate("BRACNAC", "<html><head/><body><p>Use this parameter if you do not want to clusterize samples during normalization</p></body></html>"))
self.clust_box.setText(_translate("BRACNAC", "Not clust"))
self.Hscores_threshold_text.setText(_translate("BRACNAC", "9.9"))
self.label_7.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Minimal hard score for large rearrangement detection</p></body></html>"))
self.label_7.setWhatsThis(_translate("BRACNAC", "<html><head/><body><p>Minimal hard score for large rearrangement detection</p></body></html>"))
self.label_7.setText(_translate("BRACNAC", "Hard scores threshold"))
self.Hpvalue_text.setText(_translate("BRACNAC", "0.001"))
self.label_6.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Maximal p-value for hard filtering mutations</p></body></html>"))
self.label_6.setWhatsThis(_translate("BRACNAC", "<html><head/><body><p>Maximal p-value for hard filtering mutations</p></body></html>"))
self.label_6.setText(_translate("BRACNAC", "Hard p-value"))
self.permutations_number_text.setText(_translate("BRACNAC", "1000"))
self.label_8.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Number of permutations for calculating p-value</p></body></html>"))
self.label_8.setWhatsThis(_translate("BRACNAC", "<html><head/><body><p>Number of permutations for calculating p-value</p></body></html>"))
self.label_8.setText(_translate("BRACNAC", "Permutatious number"))
self.minimal_score_text.setText(_translate("BRACNAC", "2"))
self.label_9.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Minimal score for large rearrangement detection</p></body></html>"))
self.label_9.setWhatsThis(_translate("BRACNAC", "<html><head/><body><p>Minimal score for large rearrangement detection</p></body></html>"))
self.label_9.setText(_translate("BRACNAC", "Minimal score"))
self.maximal_p_value_text.setText(_translate("BRACNAC", "0.05"))
self.label_10.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Maximal p-value for filtering mutations</p></body></html>"))
self.label_10.setWhatsThis(_translate("BRACNAC", "<html><head/><body><p>Maximal p-value for filtering mutations</p></body></html>"))
self.label_10.setText(_translate("BRACNAC", "Maximal p-value"))
self.minimal_median_coverage_text.setText(_translate("BRACNAC", "100"))
self.label_11.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Minimal median coverage for patient</p></body></html>"))
self.label_11.setWhatsThis(_translate("BRACNAC", "<html><head/><body><p>Minimal median coverage for patient</p></body></html>"))
self.label_11.setText(_translate("BRACNAC", "Minimal median coverage"))
self.exonCoveredWhole_text.setText(_translate("BRACNAC", "1"))
self.label_14.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Value for calculating score when whole exon is covered </p></body></html>"))
self.label_14.setText(_translate("BRACNAC", "Whole exon covered"))
self.exonCoveredPart_text.setText(_translate("BRACNAC", "0.4"))
self.label_13.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Value for calculating score when part of exon is covered</p></body></html>"))
self.label_13.setText(_translate("BRACNAC", "Exon covered partially"))
self.exonNonCovered_text.setText(_translate("BRACNAC", "0"))
self.label_12.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Value for calculating score when exon is not covered</p></body></html>"))
self.label_12.setText(_translate("BRACNAC", "Non-covered exon"))
self.delTh1_text.setText(_translate("BRACNAC", "1.3"))
self.label_15.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Normalized value of coverage for considering an amplicon as likely deleted</p></body></html>"))
self.label_15.setText(_translate("BRACNAC", "del1"))
self.delTh2_text.setText(_translate("BRACNAC", "1.4"))
self.label_16.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Normalized value of coverage for considering an amplicon as probably deleted </p></body></html>"))
self.label_16.setText(_translate("BRACNAC", "del2"))
self.duplTh1_text.setText(_translate("BRACNAC", "2.8"))
self.label_17.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Normalized value of coverage for considering an amplicon as likely duplicated</p></body></html>"))
self.label_17.setText(_translate("BRACNAC", "dupl1"))
self.duplTh2_text.setText(_translate("BRACNAC", "2.7"))
self.label_18.setToolTip(_translate("BRACNAC", "<html><head/><body><p>Normalized value of coverage for considering an amplicon as probably duplicated</p></body></html>"))
self.label_18.setText(_translate("BRACNAC", "dupl2"))
self.start_button.setText(_translate("BRACNAC", "Start"))