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<title>4DN Outreach Programs</title>
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<h2>Education and Outreach</h2>
<p>This is a list of past and up-coming conferences and tutorial material advertising 4DN progress with workshops and scientific talks. If you have any suggestion please contact us sending an email to [email protected]</p>
<hr/>
<h2>Tutorial Materials</h2>
<h3><b><a target="_blank" href="https://www.youtube.com/watch?v=ydIbmylbEnw&list=PLiJ0I11RAJ2qR9PQcB4xhIpOv4RcFwGoT&index=3&ab_channel=4DNucleome">Tutorial for 4DN new members</a></b></h3>
Welcome to 4DN! Watch this video on YouTube to learn how to use 4DN tools and services!
<h3><b><a target="_blank" href="https://www.youtube.com/channel/UCe6r3u3rmaYAKSEuTLmfFxA">4DN YouTube Channel</a></b></h3>
Official 4D Nucleome YouTube channel. Webinars, workshops and other 4DN-related videos are posted.
Subscribe to the channel!
<h3><b><a target="_blank" href="https://www.statnews.com/2016/03/31/dna-shape-double-helix-dekker/">4DN Investigator Featured on "Science Happens!"</a></b></h3>
In Episode 5 of "Science Happens", named : "Everything you thought you knew about the shape of DNA is wrong".
Watch Dr. Job Dekker describe how the folding of DNA strands holds cues to human health <a target="_blank" href="https://www.statnews.com/2016/03/31/dna-shape-double-helix-dekker/">here</a>.
<h3><b><a target="_blank" href="https://www.sciencedirect.com/science/article/pii/S0092867416303373">Conversations: A Guide to Packing Your DNA</a></b></h3>
Genetic material is not randomly organized within the nucleus of a cell. How this organization occurs and why it matters are questions that Cell editor Marta Koch posed to Mitchell Guttman, Job Dekker, and Stavros Lomvardas.
The 4D Nucleome grantees Drs. Job Dekker, Mitchell Guttman, and Stavros Lomvardas discuss the organization of genetic material in the nucleus, how it occurs, and why it matters.
<h3><b><a target="_blank" href="https://www.nature.com/news/plot-a-course-through-the-genome-1.22553">A quick guide to 4DN visualization software</a></b></h3>
<i>Plot a course through the genome</i>: inspired by Google Maps, a suite of tools is allowing researchers to chart the complex conformations of chromosomes.
<h3><b><a target="_blank" href="https://github.com/hms-dbmi/hic-data-analysis-bootcamp">Hi-C Data Analysis Bootcamp</a></b></h3>
A tutorial on measuring, analyzing, and visualizing the 3D genome with Hi-C provided by Harvard, MIT, and UMassMed (Burak Alver, Nils Gehlenborg and Peter Park).
<h3><b><a target="_blank" href="http://blogs.nature.com/naturejobs/2017/09/11/techblog-hipiler-simplifies-chromatin-structure-analysis/">TechBlog: HiPiler simplifies chromatin structure analysis</a></b></h3>
A blog post about the software HiPiler from Nils Gehlenborg Lab published on Nature.
<br/>
<br/>
<hr/>
<h2>Up-coming workshops and conferences</h2>
<h3><b>4DN Tutorial Series 2022: The 4DN Data Portal - Data, Resources and Tools to help elucidate nuclear organization in space and time</b></h3>
When: September 23, 2022. 9AM - 10AM PST.<br/>
Where: Virtual Meeting <a target="_blank" href="https://4dnucleome-org.zoom.us/j/95145522681?pwd=TFN4ZG0xamYwMXpvbnE1Y0dkMFllUT09
"> (Zoom link)</a><br/>
Presenter: Andrew Schroeder, Senior Data Curator (4DN - DCIC)
<br/>
<br/>
<hr/>
<h2>Past workshops and conferences</h2>
<h3><b>Keystone Symposia: Higher-Order Chromatin Architecture in Time and Space<a target="_blank" href="https://virtual.keystonesymposia.org/ks/live/868/page/9243"> (Click here for registration)</a></b></h3>
When: November 15-17, 2021. 10AM EST.<br/>
Where: Virtual Meeting<br/>
Scientific Organizers: Jennifer E. Phillips-Cremins, Job Dekker and Stavros Lomvardas
<h3><b>Second Annual Meeting on Advances on Nuclear Topology and 3D Chromatin Architecture in Cancer <a target="_blank" href="https://nyulangone.zoom.us/webinar/register/WN_8dbFkbXuQDuvT1VW9yJoWw">(Click here for free registration)</a></b></h3>
When: September 24, 2021<br/>
Where: Virtual on Zoom<br/>
Scientific Organizers: Jane Skok, Iannis Aifantis, Ari Melnick
<h3><b><a target="_blank" href="https://www.keystonesymposia.org/ks/Online/Events/2020X3/Details.aspx?EventKey=2020X3">Higher-Order Chromatin Architecture in Time and Space</a></b></h3>
<b>The 2020 Keystone meeting is meant to highlight new frontiers across disciplines in tackling the dynamics and functional roles of the 3D genome in cellular functions across time and space in development and disease. The conference program will also include workshops on: (1) Leading computational methods to identify biologically relevant patterns in Hi-C data, (2) New genome mapping and imaging technologies, and (3) New data resources available through the 4D Nucleome consortium. Finally, it will conclude with a session devoted to novel tools for imaging and engineering the 3D genome.</b><br/>
When: March 15 - 19, 2020<br/>
Where: Whistler Conference Centre, Whistler, BC, Canada<br/>
Scientific Organizers: Jennifer E. Phillips-Cremins, Job Dekker and Stavros Lomvardas
<h3><b><a target="_blank" href="https://www.embo-embl-symposia.org/symposia/2020/EES20-03/">The Four-Dimensional Genome</a></b></h3>
<b>This symposium will bring together latest advances in the fields of genomics, microscopy and modelling to foster their integration towards a comprehensive spatial and temporal understanding of the functional four-dimensional organisation of the eukaryotic genome. </b><br/>
When: Mar 29 - Apr 1, 2020<br/>
Where: EMBL Heidelberg, Germany<br/>
Organizers: Wendy Bickmore, Jan Ellenberg, Susan M. Gasser, Christian Haring, Bas van Steensel, Tim Nurnberger.
<h3><b><a target="_blank" href="https://www.4dnucleome.org/4dn-ascb-meeting-2019.html">2019 4DN-ASCB Satellite Meeting</a></b></h3>
<b>Bridging the 4D Genome with Cell Biology</b><br/>
When: December 5-6, 2019<br/>
Where: Capital Hilton, Washington, D.C.<br/>
Meeting Committee Chairs: Jennifer Phillips-Cremins, Bing Ren, Sheng Zhong
<h3><b><a target="_blank" href="https://www.jax.org/longread">Long-Read Sequencing Workshop</a></b></h3>
When: September 17-20, 2019<br/>
Where: The Jackson Laboratory for Genomic Medicine, Farmington, CT<br/>
Organizers: Chia-Lin Wei, Rachel Goldfeder
<h3><b><a target="_blank" href="https://drive.google.com/file/d/1TjOOL2WekY2dcU7zJjDwxaojvwGcjmbJ/view?usp=sharing">2019 Gordon Research Conference</a></b></h3>
<b>Genome Architecture in Cell Fate and Disease:
The Eukaryotic Genome in 4 Dimensions: Integrative Approaches to Bridging Genotype and Phenotype</b><br/>
When: August 4-9, 2019<br/>
Where: The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong<br/>
Organizers: Dave Gilbert, Yijun Ruan, Victor Corces and Danny Leung
<h3><b><a target="_blank" href="https://drive.google.com/file/d/1TjOOL2WekY2dcU7zJjDwxaojvwGcjmbJ/view?usp=sharing">2020 FASEB meeting on Nuclear Bodies</a></b></h3>
When: July 26-31, 2019<br/>
Where: Oak island Resort and Conference Center, Nova Scotia, Canada<br/>
Organizers: Paul Kaufman, Karla Neugebauer, Thoru Pederson
<h3><b><a target="_blank" href="http://www.hic2019.conferences-pasteur.org/">François Jacob Conference</a></b></h3>
<b>Evolution, Structure and Function of Chromosomes High Order Structure</b><br/>
When: June 4-7, 2019<br/>
Where: Institute Pasteur, Paris, France<br/>
<h3><b><a target="_blank" href="http://ubic.org/sbc">Southwestern Bioinformatics Conference</a></b></h3>
When: May 31, 2019<br/>
Where: Sanford Consortium, San Diego, CA<br/>
<h3><b><a target="_blank" href="https://www.biophysics.org/2019meeting#/">Biophysical Society Annual Meeting</a></b></h3>
<b>63rd Annual Meeting of the Biophysical Society</b><br/>
When: March 2-6, 2019<br/>
Where: Baltimore, Maryland, USA<br/>
<h3><b><a target="_blank" href="http://www.keystonesymposia.org/19X6">2019 Keystone Symposia</a></b></h3>
<b>3D Genome: Gene Regulation and Disease</b><br/>
When: March 17-21, 2019<br/>
Where: Fairmont Banff Springs, Banff, Alberta, Canada<br/>
Scientific Organizers: Bing Ren, Ana Pombo and Joseph R. Ecker
<h3><b><a target="_blank" href="https://www.grc.org/cancer-genetics-and-epigenetics-conference/2019/">2019 Gordon Research Conference</a></b></h3>
<b>How Alterations in DNA Sequence and Chromatin Modifications Impact Cancer Etiology and Therapy</b><br/>
When: April 7-12, 2019<br/>
Where: Renaissance Tuscany Il Ciocco, Lucca (Barga), Italy<br/>
Chair: Jonathan D. Licht; Vice Chair: Ting Wang
<h3><b><a target="_blank" href="http://www.keystonesymposia.org/index.cfm?e=web.Meeting.Program&meetingid=1596">2019 Keystone Symposia</a></b></h3>
<b>Biomolecular Condensates: Phase-Separated Organizers of Cellular Biochemistry</b><br/>
When: April 10-13, 2019<br/>
Where: Snowbird Resort, Snowbird, Utah, USA<br/>
Scientific Organizers: Michael K. Rosen and Anthony Hyman
<h3><b><a target="_blank" href="4dn-ascb-meeting-2018.html">2018 4DN-ASCB Satellite Meeting: bridging the 4D Genome with Cell Biology</a></b></h3>
When: December 7, 2018<br/>
Where: Marriott Marquis San Diego Marina, San Diego, CA, USA <br/>
Organizers: Bing Ren, Sheng Zhong, Ana Pombo, Jennifer Phillips-Cremins, Thoru Pederson, Ting Wang
<h3><b>Centromere Biology - 2018 Gordon Research Conference</b></h3>
When: July 29 - August 3, 2018<br/>
Where: Mount Snow Resort, West Dover, Vermont, USA<br/>
Organizers: Aaron Straight and Sylvia Erhardt
<h3><b>Chromatin Architecture and Chromosome Organization</b></h3>
When: March 23-27, 2018<br/>
Where: Whistler, British Columbia, Canada<br/>
Scientific Organizers: Edith Heard and Peter Fraser
<h3><b>DNA and RNA Methylation</b></h3>
When: January 21-25, 2018<br/>
Where: Fairmont Hotel Vancouver, Vancouver, British Columbia, Canada<br/>
Scientific Organizers: Chuan He and Ting Wang, January 22th<br/>
Workshop on "Epigenome and Computational Biology" hosted by Dr Ting Wang
<h3><b>Program in Quantitative Genomics (PQG) 11th Annual Conference</b></h3>
When: November 1-2, 2017<br/>
Where: Joseph B. Martin Conference Center at Harvard Medical School in Boston, MA<br/>
Co-organized by Peter Park<br/>
KEYNOTE SPEAKERS: Bradley Bernstein (Mass General Hospital), Wouter de Laat (Hubrecht Institute), William Greenleaf (Stanford University)<br/>
SPEAKERS: Erez Lieberman Aiden (Baylor College of Medicine), Nils Gehlenborg (Harvard Medical School), Francesco Ferrari (FIRC Institute of Molecular Oncology), Luca Giorgetti (Friedrich Miescher Institute), Ana Pombo (Max Delbrück Center for Molecular Medicine), Kikue Tachibana-Konwalski (Austrian Academy of Sciences), Ting Wu (Harvard Medical School), Feng Yue (Pennsylvania State University), Xiaowei Zhuang (Harvard Medical School)
<h3><b>Integrated Approaches for Spatial and Temporal Mapping of Gene Activity in Cells and Tissues</b></h3>
When: September 20, 2017, Bethesda<br/>
The purpose of this workshop is to introduce expertise and technology to the consortium that would be important to help achieve the 4DN goals. The workshop will focus on spatial and temporal aspects of chromatin structure that lead to activation. The goal would be to: 1) identify areas of collaboration for the 4DN network, 2) identify potential areas of collaboration with other programs, 3) provide an opportunity to have a dialog between 4DN investigators and other researchers working in this field.
<h3><b>ISMB Tutorial: 3D Genome Data Processing, Analysis, and Visualization</b></h3>
When: July 21, 2017, Prague<br/>
Offered by 4DN members: Leonid Mirny, Nils Gehlenborg, and Jian Ma<br/>
Goals and Objectives: 1) To introduce the theoretical concepts related to 3D genome data analysis, 2) To familiarize participants with the data types, analysis pipeline, and common tools for analysis and visualization of 3D genome data, 3) To provide a hands on experience in data analysis by walking through some common use cases of existing tools for data analysis and visualization.
<h3><b>Gordon Research Conference: Genome Architecture in Cell Fate & Disease</b></h3>
When: July 2-7, 2017<br/>
<ul>
<li>Structure of the Nucleus (Wange Lu / Thomas Misteli)</li>
<li>3D Nuclear Structure and Human Diseases (Peter Fraser / Rafael Casellas / Martin Hetzer)</li>
<li>Cancer Epigenome (Thomas Misteli / Bing Ren)</li>
<li>Epigenome, Chromatin Structure and Gene Transcription (Yijun Ruan / Joanna Wysocka / Wouter De Laat)</li>
<li>Non-Coding RNA and Chromatin Structure (Rafael Casellas / Mitch Guttman / Peter Fraser)</li>
<li>Tools and Technology to Study 4D Nucleome (David Gilbert / Kazuhiro Maeshima / Jane Skok)</li>
</ul>
<h3><b>Workshop on Chromatin Interaction Analysis by Paired-End Tag Sequencing (ChIA-PET)</b></h3>
Presenters: The Jackson Laboratory for Genomic Medicine<br/>
When: 11/7/16-11/7/16
<h3><b>WashU Epigenome Browser @ Keystone Symposia 2016</b></h3>
Presenters: Ting Wang<br/>
Where: 2016 Keystone Symposia, Chromatin and Epigenetics (C2)<br/>
When: 3:30-4:30pm 3/21/16
<h3><b>A Toxicology User's Guide to the Roadmap Epigenomics and ENCODE Data Resources</b></h3>
Presenters: Ting Wang, Feng Yue, Lisa Chadwick, Daniel Gilchrist, Shaun McCullough, and Terry Furey<br/>
Where: SOT 2016 Satellite Meeting<br/>
When: 1:00-6:00pm 3/17/16
<h3><b>Workshop on 3D Genome Mapping Technology</b></h3>
Presenters: Rafael Casellas, Melissa Fullwood, James Noonan, Yijun Ruan, Chia-Lin Wei, and Michael Q. Zhang<br/>
When: 11/10/14-11/4/14
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