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install_bioinformatics_packages.md

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Instructions for installing bioinformatics packages.

Author: Olga Botvinnik
Email: [email protected]
Date: 2016-06-09

This document sets up computers with no bioinformatics tools to be ready for running alignments and counting reads. This assumes you have the Anaconda package manager installed.

$ conda config --add channels r
$ conda config --add channels bioconda
    1. Install Bioinformatics packages
$ conda install --yes STAR samtools subread bedtools cutadapt fastqc