From 41ffe178f9c5ac9511609233083054dd2afa1742 Mon Sep 17 00:00:00 2001 From: Eric Kofman Date: Fri, 19 Jul 2024 09:53:21 -0700 Subject: [PATCH 01/10] memprof --- .../final_filtered_site_info.tsv | 5812 ++++++------- .../final_filtered_site_info.tsv | 2460 +++--- .../sc_subset_CT/final_filtered_site_info.tsv | 7468 ++++++++++++++++- marine.py | 3 +- src/core.py | 3 +- src/utils.py | 7 +- 6 files changed, 11374 insertions(+), 4379 deletions(-) diff --git a/examples/bulk_subset_AI/final_filtered_site_info.tsv b/examples/bulk_subset_AI/final_filtered_site_info.tsv index f7b31e5..04f7261 100644 --- a/examples/bulk_subset_AI/final_filtered_site_info.tsv +++ b/examples/bulk_subset_AI/final_filtered_site_info.tsv @@ -1,2984 +1,2984 @@ site_id barcode contig position ref alt strand count coverage conversion strand_conversion -no_barcode_1_70249952_A_G_+ no_barcode 1 70249952 A G + 1 5 A>G A>G -no_barcode_1_13786591_A_G_+ no_barcode 1 13786591 A G + 1 2 A>G A>G -no_barcode_1_25223364_T_C_- no_barcode 1 25223364 T C - 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1 1 T>C A>G +no_barcode_1_54226711_T_G_- no_barcode 1 54226711 T G - 1 1 T>G A>C +no_barcode_1_206696173_T_C_- no_barcode 1 206696173 T C - 1 7 T>C A>G +no_barcode_1_92841819_A_G_+ no_barcode 1 92841819 A G + 1 16 A>G A>G +no_barcode_1_92833440_A_G_+ no_barcode 1 92833440 A G + 1 22 A>G A>G +no_barcode_1_109412086_T_A_- no_barcode 1 109412086 T A - 1 4 T>A A>T +no_barcode_1_234373513_G_C_- no_barcode 1 234373513 G C - 1 1 G>C C>G +no_barcode_1_26170160_T_C_+ no_barcode 1 26170160 T C + 2 2 T>C T>C +no_barcode_1_16459197_A_G_+ no_barcode 1 16459197 A G + 1 1 A>G A>G +no_barcode_1_246544601_T_C_- no_barcode 1 246544601 T C - 1 1 T>C A>G +no_barcode_1_32333993_T_C_- no_barcode 1 32333993 T C - 1 9 T>C A>G +no_barcode_1_119742837_G_A_+ no_barcode 1 119742837 G A + 1 7 G>A G>A +no_barcode_1_205715670_T_C_- no_barcode 1 205715670 T C - 1 4 T>C A>G +no_barcode_1_151400781_A_G_+ no_barcode 1 151400781 A G + 1 8 A>G A>G +no_barcode_1_6197682_T_C_- no_barcode 1 6197682 T C - 1 17 T>C A>G +no_barcode_1_38863814_T_C_- no_barcode 1 38863814 T C - 1 1 T>C A>G +no_barcode_1_108932470_T_C_- no_barcode 1 108932470 T C - 1 1 T>C A>G +no_barcode_1_156333607_C_A_- no_barcode 1 156333607 C A - 1 11 C>A G>T +no_barcode_1_16620430_T_C_- no_barcode 1 16620430 T C - 1 1 T>C A>G +no_barcode_1_86455394_A_G_+ no_barcode 1 86455394 A G + 1 1 A>G A>G +no_barcode_1_153626056_T_C_- no_barcode 1 153626056 T C - 1 1 T>C A>G +no_barcode_1_11016991_A_G_+ no_barcode 1 11016991 A G + 1 5 A>G A>G +no_barcode_1_11750241_G_T_+ no_barcode 1 11750241 G T + 1 1 G>T G>T +no_barcode_1_43977803_A_G_+ no_barcode 1 43977803 A G + 1 1 A>G A>G +no_barcode_1_113973322_A_G_+ no_barcode 1 113973322 A G + 1 1 A>G A>G +no_barcode_1_23693892_A_G_+ no_barcode 1 23693892 A G + 1 30 A>G A>G +no_barcode_1_35184473_T_C_- no_barcode 1 35184473 T C - 1 3 T>C A>G diff --git a/examples/bulk_subset_CT/final_filtered_site_info.tsv b/examples/bulk_subset_CT/final_filtered_site_info.tsv index 0240f5f..5aa2bad 100644 --- a/examples/bulk_subset_CT/final_filtered_site_info.tsv +++ b/examples/bulk_subset_CT/final_filtered_site_info.tsv @@ -1,1273 +1,1273 @@ site_id barcode contig position ref alt strand count coverage conversion strand_conversion -no_barcode_1_151266575_T_C_+ no_barcode 1 151266575 T C + 3 3 T>C T>C -no_barcode_1_171592086_C_T_+ no_barcode 1 171592086 C T + 1 1 C>T C>T -no_barcode_1_175000171_C_T_+ no_barcode 1 175000171 C T + 1 1 C>T C>T -no_barcode_1_634848_A_C_+ no_barcode 1 634848 A C + 1 30 A>C A>C -no_barcode_1_171704096_G_A_- no_barcode 1 171704096 G A - 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1 1 G>A C>T -no_barcode_1_28237134_C_T_+ no_barcode 1 28237134 C T + 1 1 C>T C>T -no_barcode_1_28499261_A_G_+ no_barcode 1 28499261 A G + 1 1 A>G A>G -no_barcode_1_11025250_C_T_+ no_barcode 1 11025250 C T + 1 1 C>T C>T -no_barcode_1_2401201_T_C_+ no_barcode 1 2401201 T C + 2 2 T>C T>C -no_barcode_1_23694662_G_A_+ no_barcode 1 23694662 G A + 1 36 G>A G>A -no_barcode_1_153644381_T_C_+ no_barcode 1 153644381 T C + 1 1 T>C T>C -no_barcode_1_112671472_C_T_+ no_barcode 1 112671472 C T + 2 2 C>T C>T -no_barcode_1_15605023_C_T_+ no_barcode 1 15605023 C T + 1 1 C>T C>T -no_barcode_1_96679473_T_A_- no_barcode 1 96679473 T A - 1 16 T>A A>T -no_barcode_1_30941233_G_A_- no_barcode 1 30941233 G A - 1 1 G>A C>T -no_barcode_1_944307_T_C_+ no_barcode 1 944307 T C + 1 2 T>C T>C -no_barcode_1_226361534_C_A_- no_barcode 1 226361534 C A - 1 3 C>A G>T -no_barcode_1_28203811_C_A_+ no_barcode 1 28203811 C A + 1 4 C>A C>A -no_barcode_1_37540158_G_A_- no_barcode 1 37540158 G A - 1 1 G>A C>T -no_barcode_1_234393445_C_T_+ no_barcode 1 234393445 C T + 1 2 C>T C>T -no_barcode_1_202728943_G_A_- no_barcode 1 202728943 G A - 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1 1 G>C C>G +no_barcode_1_35178791_A_T_- no_barcode 1 35178791 A T - 1 2 A>T T>A +no_barcode_1_153991163_C_A_+ no_barcode 1 153991163 C A + 1 51 C>A C>A +no_barcode_1_32605549_A_G_+ no_barcode 1 32605549 A G + 1 1 A>G A>G +no_barcode_1_200406081_G_A_- no_barcode 1 200406081 G A - 1 1 G>A C>T +no_barcode_1_37540206_G_A_- no_barcode 1 37540206 G A - 1 1 G>A C>T +no_barcode_1_165727767_G_A_- no_barcode 1 165727767 G A - 1 2 G>A C>T +no_barcode_1_235051655_G_A_- no_barcode 1 235051655 G A - 1 1 G>A C>T +no_barcode_1_117075465_A_T_+ no_barcode 1 117075465 A T + 1 1 A>T A>T +no_barcode_1_153662118_G_A_- no_barcode 1 153662118 G A - 1 4 G>A C>T +no_barcode_1_31915965_G_A_- no_barcode 1 31915965 G A - 1 3 G>A C>T +no_barcode_1_182884725_G_A_+ no_barcode 1 182884725 G A + 1 3 G>A G>A +no_barcode_1_43170813_C_G_- no_barcode 1 43170813 C G - 1 1 C>G G>C +no_barcode_1_6591033_G_A_- no_barcode 1 6591033 G A - 1 1 G>A C>T +no_barcode_1_182942062_G_A_- no_barcode 1 182942062 G A - 1 3 G>A C>T +no_barcode_1_8864056_C_T_- no_barcode 1 8864056 C T - 1 20 C>T G>A +no_barcode_1_204520096_T_A_- no_barcode 1 204520096 T A - 1 1 T>A A>T +no_barcode_1_7970933_C_T_+ no_barcode 1 7970933 C T + 1 7 C>T C>T +no_barcode_1_632981_T_C_+ no_barcode 1 632981 T C + 1 1 T>C T>C +no_barcode_1_65231750_C_T_+ no_barcode 1 65231750 C T + 1 1 C>T C>T +no_barcode_1_155247924_C_G_- no_barcode 1 155247924 C G - 1 1 C>G G>C +no_barcode_1_119742923_G_A_+ no_barcode 1 119742923 G A + 5 5 G>A G>A +no_barcode_1_32605552_A_G_+ no_barcode 1 32605552 A G + 1 1 A>G A>G +no_barcode_1_35189022_G_A_- no_barcode 1 35189022 G A - 1 3 G>A C>T diff --git a/examples/sc_subset_CT/final_filtered_site_info.tsv b/examples/sc_subset_CT/final_filtered_site_info.tsv index a23affb..0dbddd7 100644 --- a/examples/sc_subset_CT/final_filtered_site_info.tsv +++ b/examples/sc_subset_CT/final_filtered_site_info.tsv @@ -1,264 +1,7260 @@ site_id barcode contig position ref alt strand count coverage conversion strand_conversion -AAAGTCCAGTCGGCCT-1_19_5495468_T_C_- AAAGTCCAGTCGGCCT-1 19 5495468 T C - 1 1 T>C A>G -AACACACTCGTAGCCG-1_19_5802413_C_G_- AACACACTCGTAGCCG-1 19 5802413 C G - 1 1 C>G G>C -AACAAAGGTGTAGTGG-1_19_29388091_T_C_+ AACAAAGGTGTAGTGG-1 19 29388091 T C + 1 1 T>C T>C -AACTTCTCACTAACGT-1_19_6059432_G_A_+ AACTTCTCACTAACGT-1 19 6059432 G A + 1 1 G>A G>A -AAAGGTACAATTGCAC-1_19_10245431_G_A_- AAAGGTACAATTGCAC-1 19 10245431 G A - 1 1 G>A C>T -AACCACATCGGAGATG-1_19_53618774_A_C_+ AACCACATCGGAGATG-1 19 53618774 A C + 1 1 A>C A>C -AAACCCACAATCTCTT-1_19_4114518_G_A_- AAACCCACAATCTCTT-1 19 4114518 G A - 1 1 G>A C>T -AAGACAAAGAAGGGAT-1_19_5799269_T_C_- AAGACAAAGAAGGGAT-1 19 5799269 T C - 1 1 T>C A>G -AACTTCTAGGGATCTG-1_19_5107938_T_G_- AACTTCTAGGGATCTG-1 19 5107938 T G - 1 1 T>G A>C -AACCCAAAGCGATCGA-1_19_32672829_G_A_- AACCCAAAGCGATCGA-1 19 32672829 G A - 1 1 G>A C>T -AACCTGATCGGATACT-1_19_7453068_A_T_- AACCTGATCGGATACT-1 19 7453068 A T - 1 1 A>T T>A -AACCACACAGCTTTGA-1_19_5800797_C_A_- AACCACACAGCTTTGA-1 19 5800797 C A - 1 1 C>A G>T -AACAAGAAGTAAACTG-1_19_5802630_T_A_- AACAAGAAGTAAACTG-1 19 5802630 T A - 1 2 T>A A>T -AACGAAACAGGATCTT-1_19_7198280_G_A_- AACGAAACAGGATCTT-1 19 7198280 G A - 1 1 G>A C>T -AAAGGTAAGACTTCAC-1_19_5802641_A_T_- AAAGGTAAGACTTCAC-1 19 5802641 A T - 1 3 A>T T>A -AAGACAAGTCGAATTC-1_19_5493838_C_T_+ AAGACAAGTCGAATTC-1 19 5493838 C T + 1 1 C>T C>T -AACCTGACAAGTGACG-1_19_5802155_C_A_- AACCTGACAAGTGACG-1 19 5802155 C A - 1 2 C>A G>T +AAAGAACCAGCAAGAC-1_11_75465702_G_A_+ AAAGAACCAGCAAGAC-1 11 75465702 G A + 1 1 G>A G>A +AACCCAAAGAATTGTG-1_12_29732478_T_C_+ AACCCAAAGAATTGTG-1 12 29732478 T C + 1 1 T>C T>C +AACGGGAAGCAGCCCT-1_15_41861020_C_T_+ AACGGGAAGCAGCCCT-1 15 41861020 C T + 1 1 C>T C>T +AACCACATCCTAGCTC-1_2_5379332_A_T_- AACCACATCCTAGCTC-1 2 5379332 A T - 1 1 A>T T>A +AACAAGACAAGCGAAC-1_2_73908655_A_G_- AACAAGACAAGCGAAC-1 2 73908655 A G - 1 1 A>G T>C +AAACCCACACCGTGGT-1_7_16915470_T_A_- AAACCCACACCGTGGT-1 7 16915470 T A - 1 1 T>A A>T +AACAAAGCACGGCACT-1_10_7691443_C_T_+ AACAAAGCACGGCACT-1 10 7691443 C T + 1 1 C>T C>T +AACAAGAAGATGGTAT-1_10_86690966_G_A_- AACAAGAAGATGGTAT-1 10 86690966 G A - 1 1 G>A C>T +AACGTCATCCCAATAG-1_2_34775152_A_G_+ AACGTCATCCCAATAG-1 2 34775152 A G + 1 1 A>G A>G +AACCTGAGTTTCGGCG-1_16_57391454_T_C_- AACCTGAGTTTCGGCG-1 16 57391454 T C - 1 1 T>C A>G +AAATGGAAGCAGATAT-1_16_59978412_C_G_- AAATGGAAGCAGATAT-1 16 59978412 C G - 1 1 C>G G>C +AAGACAAGTTGCATAC-1_16_57391454_T_C_- AAGACAAGTTGCATAC-1 16 57391454 T C - 1 1 T>C A>G +AACACACTCTGCGGAC-1_17_24721282_C_T_+ AACACACTCTGCGGAC-1 17 24721282 C T + 1 1 C>T C>T +AAACGCTAGGTTACAA-1_6_57809412_T_A_- AAACGCTAGGTTACAA-1 6 57809412 T A - 1 1 T>A A>T +AACCTTTCATTGAAAG-1_2_92615167_G_A_+ AACCTTTCATTGAAAG-1 2 92615167 G A + 1 1 G>A G>A +AACCACACAGCTTTGA-1_9_3000560_T_G_- AACCACACAGCTTTGA-1 9 3000560 T G - 1 1 T>G A>C +AAAGTGACAAATGGCG-1_7_129606536_G_C_+ AAAGTGACAAATGGCG-1 7 129606536 G C + 1 1 G>C G>C +AACTTCTCATGAATAG-1_8_120165223_A_G_+ AACTTCTCATGAATAG-1 8 120165223 A G + 1 1 A>G A>G +AACGAAAAGACCTGGA-1_11_52246538_C_T_+ AACGAAAAGACCTGGA-1 11 52246538 C T + 1 1 C>T C>T +AAGAACACACAGCCTG-1_16_57391461_A_T_- AAGAACACACAGCCTG-1 16 57391461 A T - 1 1 A>T T>A +AACCTGAAGAGATGCC-1_9_123461940_T_G_+ AACCTGAAGAGATGCC-1 9 123461940 T G + 1 1 T>G T>G +AAAGTCCAGAGTTGAT-1_17_39848018_C_T_+ AAAGTCCAGAGTTGAT-1 17 39848018 C T + 1 1 C>T C>T +AAACCCAAGTTTAGGA-1_6_4624267_G_A_+ AAACCCAAGTTTAGGA-1 6 4624267 G A + 1 1 G>A G>A +AACACACGTGTTGCCG-1_17_86655108_G_C_+ AACACACGTGTTGCCG-1 17 86655108 G C + 1 1 G>C G>C +AAACCCATCGGATAAA-1_9_108559968_C_T_+ AAACCCATCGGATAAA-1 9 108559968 C T + 1 1 C>T C>T +AACGGGAGTCAGGCAA-1_9_75565815_T_G_- AACGGGAGTCAGGCAA-1 9 75565815 T G - 1 1 T>G A>C +AAAGTCCTCGGCTCTT-1_17_39848018_C_T_+ AAAGTCCTCGGCTCTT-1 17 39848018 C T + 1 1 C>T C>T +AAAGGGCTCTCACTCG-1_18_35254659_T_C_+ AAAGGGCTCTCACTCG-1 18 35254659 T C + 1 1 T>C T>C +AACTTCTTCGCGATCG-1_11_53280517_T_C_- AACTTCTTCGCGATCG-1 11 53280517 T C - 1 1 T>C A>G +AAAGTCCTCTGCGATA-1_2_51707058_T_C_- AAAGTCCTCTGCGATA-1 2 51707058 T C - 1 1 T>C A>G +AACCACATCCTAGCTC-1_14_55066167_C_T_- AACCACATCCTAGCTC-1 14 55066167 C T - 1 1 C>T G>A +AACAACCCAGGAACCA-1_17_66119306_C_T_+ AACAACCCAGGAACCA-1 17 66119306 C T + 1 1 C>T C>T +AAAGTCCCAACCAGAG-1_11_96829936_C_T_- AAAGTCCCAACCAGAG-1 11 96829936 C T - 1 1 C>T G>A +AAAGTGAGTAGGTACG-1_14_73274259_C_T_- AAAGTGAGTAGGTACG-1 14 73274259 C T - 1 1 C>T G>A +AACAAGAGTTCTCACC-1_4_132854339_A_G_- AACAAGAGTTCTCACC-1 4 132854339 A G - 1 1 A>G T>C +AACCCAATCCTCTAGC-1_19_5802657_G_A_- AACCCAATCCTCTAGC-1 19 5802657 G A - 1 2 G>A C>T +AAAGAACAGCGTATAA-1_11_80199722_T_C_+ AAAGAACAGCGTATAA-1 11 80199722 T C + 1 1 T>C T>C +AACCACAAGCCTTTCC-1_2_145514676_G_A_+ AACCACAAGCCTTTCC-1 2 145514676 G A + 1 1 G>A G>A +AAAGAACCAACTTCTT-1_12_14147735_G_A_- AAAGAACCAACTTCTT-1 12 14147735 G A - 1 1 G>A C>T +AAAGGATCACGACAGA-1_5_121151973_A_C_- AAAGGATCACGACAGA-1 5 121151973 A C - 1 1 A>C T>G +AACCTGAAGTCCCAGC-1_4_47353381_C_T_+ AACCTGAAGTCCCAGC-1 4 47353381 C T + 1 1 C>T C>T +AAACGCTTCAGCAGAG-1_17_39847196_A_T_- AAACGCTTCAGCAGAG-1 17 39847196 A T - 1 2 A>T T>A +AAAGGGCCAGTTGCGC-1_17_39847141_C_T_- AAAGGGCCAGTTGCGC-1 17 39847141 C T - 1 1 C>T G>A +AACGGGACATTCCTAT-1_2_98666947_G_T_- AACGGGACATTCCTAT-1 2 98666947 G T - 1 1 G>T C>A +AAAGGTAGTATGCTAC-1_11_59211691_G_A_- AAAGGTAGTATGCTAC-1 11 59211691 G A - 1 1 G>A C>T +AACCAACCAGTCGCTG-1_X_10596372_C_T_+ AACCAACCAGTCGCTG-1 X 10596372 C T + 1 1 C>T C>T +AACCAACCAGTTGGTT-1_17_39847281_A_G_+ AACCAACCAGTTGGTT-1 17 39847281 A G + 1 1 A>G A>G +AAAGAACAGCTAGATA-1_9_110071037_G_A_+ AAAGAACAGCTAGATA-1 9 110071037 G A + 1 1 G>A G>A +AACGGGAGTGGTTCTA-1_10_127172132_C_A_+ AACGGGAGTGGTTCTA-1 10 127172132 C A + 1 1 C>A C>A +AAACGCTAGGTAGGCT-1_3_57834720_C_T_+ AAACGCTAGGTAGGCT-1 3 57834720 C T + 1 1 C>T C>T +AAGAACACACCGTGCA-1_MT_7459_A_C_+ AAGAACACACCGTGCA-1 MT 7459 A C + 1 1 A>C A>C +AACCTGACAATAGTAG-1_7_98886924_G_A_- AACCTGACAATAGTAG-1 7 98886924 G A - 1 1 G>A C>T +AACCTTTCAGTAACAA-1_2_102302467_G_A_- AACCTTTCAGTAACAA-1 2 102302467 G A - 1 1 G>A C>T +AACGAAAAGCCTCTTC-1_11_7175433_C_T_+ AACGAAAAGCCTCTTC-1 11 7175433 C T + 1 1 C>T C>T +AAACCCATCGGATAAA-1_X_143735279_A_G_+ AAACCCATCGGATAAA-1 X 143735279 A G + 1 1 A>G A>G +AACTTCTAGAGAACCC-1_9_3024448_C_T_- AACTTCTAGAGAACCC-1 9 3024448 C T - 1 1 C>T G>A +AAGAACATCAGCCTTC-1_17_39847607_T_C_+ AAGAACATCAGCCTTC-1 17 39847607 T C + 1 1 T>C T>C +AAACGCTAGGCTCACC-1_X_74311701_A_G_+ AAACGCTAGGCTCACC-1 X 74311701 A G + 1 1 A>G A>G +AAACGCTCAGTAGGAC-1_10_80403053_G_A_- AAACGCTCAGTAGGAC-1 10 80403053 G A - 1 1 G>A C>T +AAAGTCCCAAACGGCA-1_9_110262209_T_A_+ AAAGTCCCAAACGGCA-1 9 110262209 T A + 1 1 T>A T>A +AACACACTCTGCGGAC-1_8_13077394_G_T_- AACACACTCTGCGGAC-1 8 13077394 G T - 1 1 G>T C>A +AAGAACAGTTGCTCCT-1_11_50137311_C_A_+ AAGAACAGTTGCTCCT-1 11 50137311 C A + 1 1 C>A C>A +AAACGCTGTCAACACT-1_17_31091199_C_A_+ AAACGCTGTCAACACT-1 17 31091199 C A + 1 1 C>A C>A +AACGAAATCCCGAAAT-1_19_32672590_G_A_- AACGAAATCCCGAAAT-1 19 32672590 G A - 1 1 G>A C>T +AACAACCGTCTCAGAT-1_6_21594200_T_A_+ AACAACCGTCTCAGAT-1 6 21594200 T A + 1 1 T>A T>A +AAACGCTCAGTAGGAC-1_X_56377384_T_G_+ AAACGCTCAGTAGGAC-1 X 56377384 T G + 1 1 T>G T>G +AAAGAACTCGTGGGAA-1_8_94179850_G_C_+ AAAGAACTCGTGGGAA-1 8 94179850 G C + 1 1 G>C G>C +AAATGGACACCCGTAG-1_10_97744017_T_C_- AAATGGACACCCGTAG-1 10 97744017 T C - 1 1 T>C A>G +AACAACCGTATGTCTG-1_16_17651305_A_G_- AACAACCGTATGTCTG-1 16 17651305 A G - 1 1 A>G T>C +AACTTCTCACACGTGC-1_1_135769078_C_T_+ AACTTCTCACACGTGC-1 1 135769078 C T + 1 1 C>T C>T +AAAGTCCCACAGTATC-1_X_98578176_A_T_- AAAGTCCCACAGTATC-1 X 98578176 A T - 1 1 A>T T>A +AAGATAGCAGTAGGAC-1_17_39847607_T_C_- AAGATAGCAGTAGGAC-1 17 39847607 T C - 1 1 T>C A>G +AAGAACATCCTGGTCT-1_17_39848018_C_T_+ AAGAACATCCTGGTCT-1 17 39848018 C T + 1 1 C>T C>T +AACCTGACACCAACAT-1_17_39847197_G_A_+ AACCTGACACCAACAT-1 17 39847197 G A + 1 2 G>A G>A +AACGAAATCCTGTAAG-1_11_36677859_C_T_- AACGAAATCCTGTAAG-1 11 36677859 C T - 1 1 C>T G>A +AAAGTGAGTATCACCA-1_16_57391680_C_T_- AAAGTGAGTATCACCA-1 16 57391680 C T - 1 1 C>T G>A +AAGAACAGTGCGTTTA-1_2_98662876_T_C_+ AAGAACAGTGCGTTTA-1 2 98662876 T C + 1 1 T>C T>C +AACAAGACAACACTAC-1_11_6419714_C_T_+ AACAAGACAACACTAC-1 11 6419714 C T + 1 1 C>T C>T +AAAGGATCATTCAGGT-1_6_49258831_A_C_- AAAGGATCATTCAGGT-1 6 49258831 A C - 1 1 A>C T>G +AAGACTCTCATTGGTG-1_9_3035772_G_A_- AAGACTCTCATTGGTG-1 9 3035772 G A - 1 1 G>A C>T +AACAACCCATTCGGGC-1_2_98662849_T_A_+ AACAACCCATTCGGGC-1 2 98662849 T A + 1 1 T>A T>A +AACTTCTAGAGTCCGA-1_8_102643013_T_C_- AACTTCTAGAGTCCGA-1 8 102643013 T C - 1 1 T>C A>G +AAACCCAAGATTGCGG-1_7_122979891_C_T_+ AAACCCAAGATTGCGG-1 7 122979891 C T + 1 1 C>T C>T +AACCAACTCATATGGC-1_9_123462100_A_T_+ AACCAACTCATATGGC-1 9 123462100 A T + 1 1 A>T A>T +AAACGCTTCGGTTAGT-1_14_24490720_C_T_+ AAACGCTTCGGTTAGT-1 14 24490720 C T + 1 1 C>T C>T +AACCATGTCCGTGCGA-1_18_48048166_T_A_+ AACCATGTCCGTGCGA-1 18 48048166 T A + 1 1 T>A T>A +AACACACGTTTGTTCT-1_11_119077767_G_A_- AACACACGTTTGTTCT-1 11 119077767 G A - 1 1 G>A C>T +AAACGCTAGGCTCACC-1_1_16103200_T_C_- AAACGCTAGGCTCACC-1 1 16103200 T C - 1 1 T>C A>G +AAATGGACACAAGGTG-1_X_136838188_A_G_+ AAATGGACACAAGGTG-1 X 136838188 A G + 1 1 A>G A>G +AACACACCAGAGGCTA-1_14_28356635_T_G_+ AACACACCAGAGGCTA-1 14 28356635 T G + 1 1 T>G T>G +AAACGCTCATCAACCA-1_16_33770110_G_C_+ AAACGCTCATCAACCA-1 16 33770110 G C + 1 1 G>C G>C +AAGACTCGTGGTACAG-1_5_112213389_A_C_- AAGACTCGTGGTACAG-1 5 112213389 A C - 1 1 A>C T>G +AAACCCACACACCTGG-1_11_120345797_G_A_- AAACCCACACACCTGG-1 11 120345797 G A - 1 1 G>A C>T +AACCATGGTTTCGTGA-1_2_154884374_T_A_- AACCATGGTTTCGTGA-1 2 154884374 T A - 1 1 T>A A>T +AACCTTTTCCTAGCGG-1_16_57391685_G_A_- AACCTTTTCCTAGCGG-1 16 57391685 G A - 1 1 G>A C>T +AAACGAAGTGATGTAA-1_3_52982201_G_A_- AAACGAAGTGATGTAA-1 3 52982201 G A - 1 1 G>A C>T +AAACCCAAGATTGCGG-1_10_13966139_G_A_+ AAACCCAAGATTGCGG-1 10 13966139 G A + 1 1 G>A G>A +AAGACAAAGAGTTCGG-1_14_65981407_C_T_+ AAGACAAAGAGTTCGG-1 14 65981407 C T + 1 1 C>T C>T +AAAGGGCTCTGCTAGA-1_2_158615338_G_C_+ AAAGGGCTCTGCTAGA-1 2 158615338 G C + 1 1 G>C G>C +AACGAAATCTTGAACG-1_16_96319627_A_G_+ AACGAAATCTTGAACG-1 16 96319627 A G + 1 1 A>G A>G +AAAGTCCGTGAGTAAT-1_3_89164997_G_T_+ AAAGTCCGTGAGTAAT-1 3 89164997 G T + 1 1 G>T G>T +AAAGGGCCACACTTAG-1_19_4549592_A_G_+ AAAGGGCCACACTTAG-1 19 4549592 A G + 1 1 A>G A>G +AAGACTCGTATCTCTT-1_17_39847607_T_C_- AAGACTCGTATCTCTT-1 17 39847607 T C - 1 1 T>C A>G +AAACGCTCAGTAGGAC-1_17_24721091_G_C_+ AAACGCTCAGTAGGAC-1 17 24721091 G C + 1 1 G>C G>C +AAAGTCCGTAGGTTTC-1_4_130781370_A_G_+ AAAGTCCGTAGGTTTC-1 4 130781370 A G + 1 1 A>G A>G +AACACACCAGAGGCTA-1_8_72758081_A_C_+ AACACACCAGAGGCTA-1 8 72758081 A C + 1 1 A>C A>C +AAACCCATCTTAAGGC-1_16_7411526_A_G_+ AAACCCATCTTAAGGC-1 16 7411526 A G + 1 1 A>G A>G +AACGGGAAGTTACTCG-1_15_44375449_G_A_- AACGGGAAGTTACTCG-1 15 44375449 G A - 1 1 G>A C>T +AAGACAACACCGCTGA-1_17_89099972_G_T_- AAGACAACACCGCTGA-1 17 89099972 G T - 1 1 G>T C>A +AACAAGACATCCGTTC-1_6_137584898_G_A_- AACAAGACATCCGTTC-1 6 137584898 G A - 1 1 G>A C>T +AAAGTCCCAACCAGAG-1_4_139649407_C_G_+ AAAGTCCCAACCAGAG-1 4 139649407 C G + 1 1 C>G C>G +AACCCAAGTTTCCATT-1_3_153396714_G_C_- AACCCAAGTTTCCATT-1 3 153396714 G C - 1 1 G>C C>G +AACGAAAGTAAGACCG-1_17_39847403_T_G_- AACGAAAGTAAGACCG-1 17 39847403 T G - 1 1 T>G A>C +AACAAAGCAATCAGCT-1_9_40805189_A_C_+ AACAAAGCAATCAGCT-1 9 40805189 A C + 1 1 A>C A>C +AACCTGACACACAGAG-1_2_130279565_G_A_- AACCTGACACACAGAG-1 2 130279565 G A - 1 1 G>A C>T +AAACGAACAACCGACC-1_7_16915469_T_A_- AAACGAACAACCGACC-1 7 16915469 T A - 1 1 T>A A>T +AAACGAAGTGTTTACG-1_4_82295476_T_G_- AAACGAAGTGTTTACG-1 4 82295476 T G - 1 1 T>G A>C +AACAAAGTCGTCGGGT-1_3_58675006_G_A_- AACAAAGTCGTCGGGT-1 3 58675006 G A - 1 1 G>A C>T +AAATGGAAGCCGGATA-1_17_39847458_A_G_- AAATGGAAGCCGGATA-1 17 39847458 A G - 1 1 A>G T>C +AACGGGAAGTTGCCCG-1_4_56957272_G_A_- AACGGGAAGTTGCCCG-1 4 56957272 G A - 1 1 G>A C>T +AACGTCATCTGGCTGG-1_17_87433581_G_A_- AACGTCATCTGGCTGG-1 17 87433581 G A - 1 1 G>A C>T +AAACCCACATATCTCT-1_10_88820859_C_G_- AAACCCACATATCTCT-1 10 88820859 C G - 1 1 C>G G>C +AAAGTCCAGGAGAGTA-1_17_27818729_C_T_- AAAGTCCAGGAGAGTA-1 17 27818729 C T - 1 1 C>T G>A +AAACGCTGTCATGGCC-1_1_75263990_A_C_- AAACGCTGTCATGGCC-1 1 75263990 A C - 1 1 A>C T>G +AAAGTCCGTAACATGA-1_17_39847458_A_G_+ AAAGTCCGTAACATGA-1 17 39847458 A G + 1 1 A>G A>G +AACCCAAGTATCGATC-1_5_31202915_T_G_- AACCCAAGTATCGATC-1 5 31202915 T G - 1 1 T>G A>C +AAATGGAAGCCGGATA-1_17_39847435_A_G_- AAATGGAAGCCGGATA-1 17 39847435 A G - 1 1 A>G T>C +AACCCAAAGCTCCCTT-1_17_39847607_T_C_- AACCCAAAGCTCCCTT-1 17 39847607 T C - 1 1 T>C A>G +AAGACAAGTCGTGATT-1_2_71211975_T_G_+ AAGACAAGTCGTGATT-1 2 71211975 T G + 1 1 T>G T>G +AAACGCTCAGTAGGAC-1_11_97778299_T_C_- AAACGCTCAGTAGGAC-1 11 97778299 T C - 1 1 T>C A>G +AACGTCAAGCGAGGAG-1_3_90614314_C_T_+ AACGTCAAGCGAGGAG-1 3 90614314 C T + 1 1 C>T C>T +AACGAAAAGCACCCAC-1_6_49389267_A_G_+ AACGAAAAGCACCCAC-1 6 49389267 A G + 1 1 A>G A>G +AACAACCAGTAATACG-1_13_110400692_A_T_+ AACAACCAGTAATACG-1 13 110400692 A T + 1 1 A>T A>T +AAGAACACACTAGGTT-1_18_75001718_C_T_+ AAGAACACACTAGGTT-1 18 75001718 C T + 1 1 C>T C>T +AAAGGGCTCTGCTAGA-1_8_93968892_C_T_+ AAAGGGCTCTGCTAGA-1 8 93968892 C T + 1 1 C>T C>T +AACTTCTCAGGACTTT-1_19_9123940_T_C_- AACTTCTCAGGACTTT-1 19 9123940 T C - 1 1 T>C A>G +AACACACTCTGCGGAC-1_18_42857675_T_C_- AACACACTCTGCGGAC-1 18 42857675 T C - 1 1 T>C A>G +AAAGTCCAGTCGGCCT-1_8_70597608_G_A_- AAAGTCCAGTCGGCCT-1 8 70597608 G A - 1 1 G>A C>T +AAATGGACAAGTGGAC-1_9_3020857_T_A_+ AAATGGACAAGTGGAC-1 9 3020857 T A + 1 1 T>A T>A +AACGTCAAGCGCCTTG-1_17_39848018_C_T_+ AACGTCAAGCGCCTTG-1 17 39848018 C T + 1 1 C>T C>T +AACTTCTCATGAATAG-1_17_83502049_G_A_- AACTTCTCATGAATAG-1 17 83502049 G A - 1 2 G>A C>T +AAACGCTCACCTAAAC-1_3_108361370_C_T_+ AAACGCTCACCTAAAC-1 3 108361370 C T + 1 1 C>T C>T +AACGAAAGTAAGACCG-1_2_67781753_G_A_+ AACGAAAGTAAGACCG-1 2 67781753 G A + 1 1 G>A G>A +AAACGAATCACTTCTA-1_19_7215356_G_A_- AAACGAATCACTTCTA-1 19 7215356 G A - 1 1 G>A C>T +AAACGAAAGGGAGGTG-1_8_72523272_A_G_- AAACGAAAGGGAGGTG-1 8 72523272 A G - 1 1 A>G T>C +AAATGGAAGCAGATAT-1_4_117948552_G_A_- AAATGGAAGCAGATAT-1 4 117948552 G A - 1 1 G>A C>T +AAAGTGACAAATGGCG-1_5_33027731_C_T_+ AAAGTGACAAATGGCG-1 5 33027731 C T + 1 1 C>T C>T +AACGTCAAGCGAGGAG-1_17_39848018_C_T_+ AACGTCAAGCGAGGAG-1 17 39848018 C T + 1 1 C>T C>T +AAAGGTAAGGCATCTT-1_16_57391679_G_T_- AAAGGTAAGGCATCTT-1 16 57391679 G T - 1 1 G>T C>A +AAACGCTTCTGCTTAT-1_9_3014296_A_C_- AAACGCTTCTGCTTAT-1 9 3014296 A C - 1 1 A>C T>G +AAACGAAAGTCGCGAA-1_7_28971407_T_C_- AAACGAAAGTCGCGAA-1 7 28971407 T C - 1 1 T>C A>G +AAAGGGCTCTCACTCG-1_5_129887278_A_G_- AAAGGGCTCTCACTCG-1 5 129887278 A G - 1 1 A>G T>C +AAAGTCCTCCGATGCG-1_X_136837319_C_G_+ AAAGTCCTCCGATGCG-1 X 136837319 C G + 1 2 C>G C>G +AACCAACAGCCAAGGT-1_9_3035183_G_T_- AACCAACAGCCAAGGT-1 9 3035183 G T - 1 1 G>T C>A +AACTTCTTCTTCACGC-1_10_72674742_A_C_+ AACTTCTTCTTCACGC-1 10 72674742 A C + 1 1 A>C A>C +AACAACCGTATGTCTG-1_18_23438601_A_T_+ AACAACCGTATGTCTG-1 18 23438601 A T + 1 1 A>T A>T +AACCTGACATCGTCCT-1_8_73307540_G_T_- AACCTGACATCGTCCT-1 8 73307540 G T - 1 1 G>T C>A +AAGAACAAGGGTTTCT-1_9_78485627_T_C_- AAGAACAAGGGTTTCT-1 9 78485627 T C - 1 1 T>C A>G +AACCACAAGCCTTTCC-1_10_81182287_A_C_+ AACCACAAGCCTTTCC-1 10 81182287 A C + 1 1 A>C A>C +AAGACAAGTCTTTCAT-1_17_90478476_A_G_- AAGACAAGTCTTTCAT-1 17 90478476 A G - 1 1 A>G T>C +AAACGAAGTTCATCTT-1_6_148141216_A_C_+ AAACGAAGTTCATCTT-1 6 148141216 A C + 1 1 A>C A>C +AAAGTCCAGTCTGGTT-1_19_38636777_G_A_+ AAAGTCCAGTCTGGTT-1 19 38636777 G A + 1 1 G>A G>A +AAATGGAAGTAGAATC-1_5_129024127_C_T_+ AAATGGAAGTAGAATC-1 5 129024127 C T + 1 1 C>T C>T +AACGGGACAGTTGTTG-1_2_174336885_A_C_+ AACGGGACAGTTGTTG-1 2 174336885 A C + 1 1 A>C A>C +AAAGGGCCAACACAGG-1_13_98849022_C_A_- AAAGGGCCAACACAGG-1 13 98849022 C A - 1 1 C>A G>T +AAGATAGGTACGCGTC-1_5_115298566_G_A_- AAGATAGGTACGCGTC-1 5 115298566 G A - 1 1 G>A C>T +AACCACAAGCTTTGTG-1_12_17284156_A_G_+ AACCACAAGCTTTGTG-1 12 17284156 A G + 1 1 A>G A>G +AAACGAAAGGTAGTCG-1_12_87449760_T_A_+ AAACGAAAGGTAGTCG-1 12 87449760 T A + 1 1 T>A T>A +AACGGGAAGTTGCCCG-1_11_87034094_C_T_- AACGGGAAGTTGCCCG-1 11 87034094 C T - 1 1 C>T G>A +AACCTTTAGGGTATAT-1_17_39848045_G_C_+ AACCTTTAGGGTATAT-1 17 39848045 G C + 1 1 G>C G>C +AAACCCACATATCTCT-1_3_152224078_C_T_+ AAACCCACATATCTCT-1 3 152224078 C T + 1 1 C>T C>T +AAACCCATCCACACAA-1_X_136837261_T_G_+ AAACCCATCCACACAA-1 X 136837261 T G + 1 1 T>G T>G +AAGACAAGTCCACATA-1_14_22606076_A_G_+ AAGACAAGTCCACATA-1 14 22606076 A G + 1 1 A>G A>G +AACAAAGGTGTAGTGG-1_19_29388092_T_C_+ AACAAAGGTGTAGTGG-1 19 29388092 T C + 1 1 T>C T>C +AAAGAACCAAATTAGG-1_X_152224982_C_T_+ AAAGAACCAAATTAGG-1 X 152224982 C T + 1 1 C>T C>T +AACCTGATCGAGAAAT-1_3_153580142_T_C_- AACCTGATCGAGAAAT-1 3 153580142 T C - 1 1 T>C A>G +AAGACAATCGAGCTGC-1_14_31373780_C_T_- AAGACAATCGAGCTGC-1 14 31373780 C T - 1 1 C>T G>A +AACCACAGTGAGATCG-1_5_122405992_C_T_+ AACCACAGTGAGATCG-1 5 122405992 C T + 1 1 C>T C>T +AACCTGATCTTCGTGC-1_4_119109666_T_G_+ AACCTGATCTTCGTGC-1 4 119109666 T G + 1 1 T>G T>G +AAAGAACAGTAACAGT-1_MT_7562_G_A_+ AAAGAACAGTAACAGT-1 MT 7562 G A + 1 1 G>A G>A +AACCTGACAAGTGACG-1_14_38933066_T_C_- AACCTGACAAGTGACG-1 14 38933066 T C - 1 1 T>C A>G +AAGACTCGTCCACATA-1_9_108572686_G_A_+ AAGACTCGTCCACATA-1 9 108572686 G A + 1 1 G>A G>A +AACTTCTAGCAGATAT-1_9_124293292_G_A_- AACTTCTAGCAGATAT-1 9 124293292 G A - 1 1 G>A C>T +AACAAGAGTTACCTGA-1_9_3014268_C_G_- AACAAGAGTTACCTGA-1 9 3014268 C G - 1 1 C>G G>C +AAACGCTCATCAACCA-1_17_35267201_G_T_+ AAACGCTCATCAACCA-1 17 35267201 G T + 1 1 G>T G>T +AACAAAGGTGGAACAC-1_11_59963242_G_A_- AACAAAGGTGGAACAC-1 11 59963242 G A - 1 1 G>A C>T +AAGACTCTCGAGTACT-1_13_106982232_C_T_- AAGACTCTCGAGTACT-1 13 106982232 C T - 1 1 C>T G>A +AACCTGAAGTCCCAGC-1_10_60302398_C_T_+ AACCTGAAGTCCCAGC-1 10 60302398 C T + 1 1 C>T C>T +AAAGTCCTCTTCCCGA-1_11_77978988_G_C_+ AAAGTCCTCTTCCCGA-1 11 77978988 G C + 1 1 G>C G>C +AAACCCACACACCTGG-1_11_120345843_G_A_- AAACCCACACACCTGG-1 11 120345843 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_14_76532965_C_G_- AAACGCTCAGTAGGAC-1 14 76532965 C G - 1 1 C>G G>C +AACCAACAGTATCCTG-1_17_39847403_T_G_- AACCAACAGTATCCTG-1 17 39847403 T G - 1 1 T>G A>C +AACAAAGTCCCGTTGT-1_9_57010948_C_A_+ AACAAAGTCCCGTTGT-1 9 57010948 C A + 1 1 C>A C>A +AAGAACAGTTCGGTTA-1_7_118119733_C_A_- AAGAACAGTTCGGTTA-1 7 118119733 C A - 1 1 C>A G>T +AAATGGATCCTTACCG-1_15_5117322_C_T_+ AAATGGATCCTTACCG-1 15 5117322 C T + 1 1 C>T C>T +AAGAACATCTCCGAAA-1_3_95475429_T_A_+ AAGAACATCTCCGAAA-1 3 95475429 T A + 1 1 T>A T>A +AACGAAAAGCAATTCC-1_17_39848018_C_T_+ AACGAAAAGCAATTCC-1 17 39848018 C T + 2 2 C>T C>T +AAAGGGCTCTCACTCG-1_17_25958366_C_T_- AAAGGGCTCTCACTCG-1 17 25958366 C T - 1 1 C>T G>A +AACACACGTTTGTTCT-1_15_99497163_G_A_- AACACACGTTTGTTCT-1 15 99497163 G A - 1 1 G>A C>T +AACAACCCAGCAGATG-1_2_136782378_C_T_+ AACAACCCAGCAGATG-1 2 136782378 C T + 1 1 C>T C>T +AACAAGAGTGGCGTAA-1_MT_10272_T_C_+ AACAAGAGTGGCGTAA-1 MT 10272 T C + 1 1 T>C T>C +AAAGGGCTCTCACTCG-1_1_172273172_T_C_- AAAGGGCTCTCACTCG-1 1 172273172 T C - 1 2 T>C A>G +AACGGGACATATGCGT-1_X_101644132_C_G_+ AACGGGACATATGCGT-1 X 101644132 C G + 1 1 C>G C>G +AACCTTTAGCGTGCTC-1_2_163725837_C_T_+ AACCTTTAGCGTGCTC-1 2 163725837 C T + 1 1 C>T C>T +AAAGTCCGTACAAGTA-1_17_39847607_T_C_- AAAGTCCGTACAAGTA-1 17 39847607 T C - 1 1 T>C A>G +AAGAACACAACTGATC-1_19_44550304_A_G_- AAGAACACAACTGATC-1 19 44550304 A G - 1 1 A>G T>C +AACAACCAGACGACTG-1_19_6530848_C_A_- AACAACCAGACGACTG-1 19 6530848 C A - 1 1 C>A G>T +AAAGTCCAGTCGGCCT-1_10_24188906_C_T_+ AAAGTCCAGTCGGCCT-1 10 24188906 C T + 1 1 C>T C>T +AAGAACAAGAGCCCAA-1_8_70868381_G_C_- AAGAACAAGAGCCCAA-1 8 70868381 G C - 1 1 G>C C>G +AAACGCTCAGTAGGAC-1_19_7215256_G_A_- AAACGCTCAGTAGGAC-1 19 7215256 G A - 1 1 G>A C>T +AAAGTGATCTCGGCTT-1_19_7215325_G_A_- AAAGTGATCTCGGCTT-1 19 7215325 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_10_80403049_G_A_- AAACGCTCAGTAGGAC-1 10 80403049 G A - 1 1 G>A C>T +AACAACCAGCGTTAGG-1_11_21557297_T_A_- AACAACCAGCGTTAGG-1 11 21557297 T A - 1 1 T>A A>T +AACGGGAAGGATAATC-1_13_55558680_T_C_- AACGGGAAGGATAATC-1 13 55558680 T C - 1 1 T>C A>G +AACCACAAGCTTTGTG-1_1_86879956_A_G_+ AACCACAAGCTTTGTG-1 1 86879956 A G + 1 1 A>G A>G +AACGGGAAGTCCCTAA-1_5_146261113_T_C_+ AACGGGAAGTCCCTAA-1 5 146261113 T C + 1 1 T>C T>C +AACAACCCAGGAACCA-1_18_36001889_T_C_+ AACAACCCAGGAACCA-1 18 36001889 T C + 1 1 T>C T>C +AAAGAACGTAGCACGA-1_5_65256419_A_G_+ AAAGAACGTAGCACGA-1 5 65256419 A G + 1 1 A>G A>G +AACGGGAAGTTGCCCG-1_19_4036691_G_A_- AACGGGAAGTTGCCCG-1 19 4036691 G A - 1 1 G>A C>T +AAAGGTACACAGTCAT-1_12_44311851_C_T_+ AAAGGTACACAGTCAT-1 12 44311851 C T + 1 1 C>T C>T +AAAGTCCCACAAATGA-1_10_121452035_T_C_- AAAGTCCCACAAATGA-1 10 121452035 T C - 1 1 T>C A>G +AAAGTGACACCAGCTG-1_2_156388239_G_A_- AAAGTGACACCAGCTG-1 2 156388239 G A - 1 1 G>A C>T +AACCACAGTCTACAAC-1_10_82650019_T_C_+ AACCACAGTCTACAAC-1 10 82650019 T C + 1 1 T>C T>C +AACCAACCAGTCGCTG-1_5_76999710_C_T_+ AACCAACCAGTCGCTG-1 5 76999710 C T + 1 1 C>T C>T +AACCTGATCTGCTAGA-1_17_39847403_T_G_- AACCTGATCTGCTAGA-1 17 39847403 T G - 1 1 T>G A>C +AAACGCTTCGGTTAGT-1_1_167372563_G_A_- AAACGCTTCGGTTAGT-1 1 167372563 G A - 1 1 G>A C>T +AACCATGCATTGCCTC-1_17_39847458_A_G_- AACCATGCATTGCCTC-1 17 39847458 A G - 1 1 A>G T>C +AACAGGGTCGGTCGGT-1_16_57391679_G_T_- AACAGGGTCGGTCGGT-1 16 57391679 G T - 1 1 G>T C>A +AAGATAGCAATAACGA-1_MT_7463_C_T_+ AAGATAGCAATAACGA-1 MT 7463 C T + 1 1 C>T C>T +AAAGAACAGCGTATAA-1_13_110399503_C_T_+ AAAGAACAGCGTATAA-1 13 110399503 C T + 1 1 C>T C>T +AACCACATCCTAGCTC-1_11_102289450_C_T_- AACCACATCCTAGCTC-1 11 102289450 C T - 1 1 C>T G>A +AAAGGTACATGTGTCA-1_17_39846128_A_G_+ AAAGGTACATGTGTCA-1 17 39846128 A G + 1 1 A>G A>G +AAACGAAGTTCATCTT-1_16_18778037_G_A_+ AAACGAAGTTCATCTT-1 16 18778037 G A + 1 2 G>A G>A +AACGAAAAGACCTGGA-1_12_4826862_G_A_+ AACGAAAAGACCTGGA-1 12 4826862 G A + 1 1 G>A G>A +AACCAACTCGATGGAG-1_16_91563848_A_C_+ AACCAACTCGATGGAG-1 16 91563848 A C + 1 1 A>C A>C +AAGACTCGTGGTACAG-1_17_24720998_T_C_+ AAGACTCGTGGTACAG-1 17 24720998 T C + 1 1 T>C T>C +AAGACTCTCGAGTACT-1_6_120795343_G_A_- AAGACTCTCGAGTACT-1 6 120795343 G A - 1 1 G>A C>T +AAGAACAAGGGTTTCT-1_2_4037292_G_C_+ AAGAACAAGGGTTTCT-1 2 4037292 G C + 1 1 G>C G>C +AACCCAAGTATCGATC-1_15_76658518_A_T_- AACCCAAGTATCGATC-1 15 76658518 A T - 1 1 A>T T>A +AAACGCTCAGTAGGAC-1_17_24721115_T_C_+ AAACGCTCAGTAGGAC-1 17 24721115 T C + 1 1 T>C T>C +AACGGGAGTCCAGGTC-1_7_110056037_A_G_+ AACGGGAGTCCAGGTC-1 7 110056037 A G + 1 1 A>G A>G +AAATGGAAGCAGATAT-1_16_59978404_G_C_- AAATGGAAGCAGATAT-1 16 59978404 G C - 1 1 G>C C>G +AAAGTGAAGGCATCGA-1_17_8297510_C_T_+ AAAGTGAAGGCATCGA-1 17 8297510 C T + 1 2 C>T C>T +AAAGGGCCATGTCTAG-1_5_14589940_G_A_+ AAAGGGCCATGTCTAG-1 5 14589940 G A + 1 1 G>A G>A +AACAACCAGTAATACG-1_12_109561861_C_T_+ AACAACCAGTAATACG-1 12 109561861 C T + 1 1 C>T C>T +AAACCCAAGATTGCGG-1_4_40733720_C_T_+ AAACCCAAGATTGCGG-1 4 40733720 C T + 1 1 C>T C>T +AAGATAGCAATAACGA-1_16_29608803_A_G_+ AAGATAGCAATAACGA-1 16 29608803 A G + 1 1 A>G A>G +AAAGGATAGTCCTGTA-1_6_30896756_G_A_- AAAGGATAGTCCTGTA-1 6 30896756 G A - 1 1 G>A C>T +AAATGGACAAGCGCAA-1_9_61913937_T_A_- AAATGGACAAGCGCAA-1 9 61913937 T A - 1 1 T>A A>T +AAACCCACAATCTCTT-1_18_82585564_C_A_+ AAACCCACAATCTCTT-1 18 82585564 C A + 1 1 C>A C>A +AAGATAGAGCTTGTGT-1_7_83933050_G_A_- AAGATAGAGCTTGTGT-1 7 83933050 G A - 1 1 G>A C>T +AAAGTCCTCACGATAC-1_1_169952594_G_A_- AAAGTCCTCACGATAC-1 1 169952594 G A - 1 1 G>A C>T +AACACACCAGAGGCTA-1_5_89057306_G_A_+ AACACACCAGAGGCTA-1 5 89057306 G A + 1 1 G>A G>A +AAACCCACACCGTGGT-1_5_93195349_G_C_- AAACCCACACCGTGGT-1 5 93195349 G C - 1 1 G>C C>G +AAACGCTCAGTAGGAC-1_17_35238643_C_T_+ AAACGCTCAGTAGGAC-1 17 35238643 C T + 1 1 C>T C>T +AAAGTGATCCGCGGAT-1_4_155260428_G_A_- AAAGTGATCCGCGGAT-1 4 155260428 G A - 1 1 G>A C>T +AAATGGACACTTTAGG-1_6_117845757_A_G_+ AAATGGACACTTTAGG-1 6 117845757 A G + 1 1 A>G A>G +AACCAACTCGATGGAG-1_4_132492111_T_G_- AACCAACTCGATGGAG-1 4 132492111 T G - 1 1 T>G A>C +AAAGGGCCATGTCTAG-1_2_5379332_A_T_- AAAGGGCCATGTCTAG-1 2 5379332 A T - 1 1 A>T T>A +AAGACAAAGGGCAGGA-1_17_34613269_G_C_+ AAGACAAAGGGCAGGA-1 17 34613269 G C + 1 1 G>C G>C +AAAGAACCAAATTAGG-1_X_152224917_C_T_+ AAAGAACCAAATTAGG-1 X 152224917 C T + 1 1 C>T C>T +AAATGGAAGCAGATAT-1_10_77616443_G_T_+ AAATGGAAGCAGATAT-1 10 77616443 G T + 1 1 G>T G>T +AACCACAAGTTGCCTA-1_6_39802446_T_C_- AACCACAAGTTGCCTA-1 6 39802446 T C - 1 1 T>C A>G +AACAAAGCACGGCACT-1_5_146261122_A_G_+ AACAAAGCACGGCACT-1 5 146261122 A G + 1 1 A>G A>G +AAAGTCCAGTCGGCCT-1_15_98518957_G_A_- AAAGTCCAGTCGGCCT-1 15 98518957 G A - 1 1 G>A C>T +AACCAACCAGATCCAT-1_15_98803941_G_A_- AACCAACCAGATCCAT-1 15 98803941 G A - 1 1 G>A C>T +AACGGGAAGTCCCTAA-1_5_146261106_C_G_+ AACGGGAAGTCCCTAA-1 5 146261106 C G + 1 1 C>G C>G +AACCAACAGCGAAACC-1_13_81750218_G_A_+ AACCAACAGCGAAACC-1 13 81750218 G A + 1 1 G>A G>A +AACCATGAGTTCCGTA-1_17_39848018_C_T_+ AACCATGAGTTCCGTA-1 17 39848018 C T + 2 2 C>T C>T +AAACCCACACCGTGGT-1_5_104079278_G_A_- AAACCCACACCGTGGT-1 5 104079278 G A - 1 1 G>A C>T +AACCAACGTGACCGTC-1_2_155822843_A_G_- AACCAACGTGACCGTC-1 2 155822843 A G - 1 1 A>G T>C +AAATGGAAGCAGATAT-1_4_138456989_A_G_+ AAATGGAAGCAGATAT-1 4 138456989 A G + 1 1 A>G A>G +AACAAAGGTGTAGTGG-1_16_57391688_T_G_- AACAAAGGTGTAGTGG-1 16 57391688 T G - 2 2 T>G A>C +AAACGAAGTTCATCTT-1_9_114749130_G_A_+ AAACGAAGTTCATCTT-1 9 114749130 G A + 1 1 G>A G>A +AACCTGAAGTCCCAGC-1_2_144142630_G_A_- AACCTGAAGTCCCAGC-1 2 144142630 G A - 1 1 G>A C>T +AAACCCAGTGCTCGTG-1_1_165944705_C_T_- AAACCCAGTGCTCGTG-1 1 165944705 C T - 1 1 C>T G>A +AACCATGAGGTGCATG-1_9_121490003_A_G_- AACCATGAGGTGCATG-1 9 121490003 A G - 1 1 A>G T>C +AAATGGACACCCGTAG-1_5_146261113_T_C_+ AAATGGACACCCGTAG-1 5 146261113 T C + 1 1 T>C T>C +AAAGTCCAGTGGGAAA-1_3_138459730_C_T_- AAAGTCCAGTGGGAAA-1 3 138459730 C T - 1 1 C>T G>A +AAGATAGGTCATCAGT-1_8_122725056_A_G_- AAGATAGGTCATCAGT-1 8 122725056 A G - 1 1 A>G T>C +AAATGGACAAGCGCAA-1_7_15917282_A_T_- AAATGGACAAGCGCAA-1 7 15917282 A T - 1 1 A>T T>A +AAACGCTCAGTAGGAC-1_3_8561456_C_T_+ AAACGCTCAGTAGGAC-1 3 8561456 C T + 1 1 C>T C>T AACGTCATCTGGCTGG-1_19_56546811_T_C_- AACGTCATCTGGCTGG-1 19 56546811 T C - 1 1 T>C A>G -AAACCCACATATCTGG-1_19_57979701_T_C_+ AAACCCACATATCTGG-1 19 57979701 T C + 1 1 T>C T>C -AACTTCTTCTTCACGC-1_19_7426023_G_A_- AACTTCTTCTTCACGC-1 19 7426023 G A - 1 1 G>A C>T -AAACGAAAGTTCCATG-1_19_55296519_G_A_+ AAACGAAAGTTCCATG-1 19 55296519 G A + 1 1 G>A G>A -AACGGGAGTTGTGCCG-1_19_38306533_C_T_+ AACGGGAGTTGTGCCG-1 19 38306533 C T + 1 1 C>T C>T +AACAAGAAGCAATTAG-1_19_5802648_T_G_- AACAAGAAGCAATTAG-1 19 5802648 T G - 1 5 T>G A>C +AACCAACTCATATGGC-1_14_70583484_T_A_- AACCAACTCATATGGC-1 14 70583484 T A - 1 1 T>A A>T +AACCAACGTCCCTGTT-1_6_128799488_T_A_- AACCAACGTCCCTGTT-1 6 128799488 T A - 1 1 T>A A>T +AACCAACCACGGTAGA-1_1_116549039_T_C_+ AACCAACCACGGTAGA-1 1 116549039 T C + 1 1 T>C T>C +AACCAACGTGGTATGG-1_6_47956391_A_G_+ AACCAACGTGGTATGG-1 6 47956391 A G + 1 1 A>G A>G +AAACCCACAATCTCTT-1_16_67071352_C_A_- AAACCCACAATCTCTT-1 16 67071352 C A - 1 1 C>A G>T +AACTTCTCACTAACGT-1_7_131418086_A_G_+ AACTTCTCACTAACGT-1 7 131418086 A G + 1 1 A>G A>G +AAAGGTACAGGACAGT-1_11_16284458_C_T_+ AAAGGTACAGGACAGT-1 11 16284458 C T + 1 1 C>T C>T +AACCACAAGAGTTGTA-1_18_56526887_A_G_- AACCACAAGAGTTGTA-1 18 56526887 A G - 1 1 A>G T>C +AAAGGATTCTAGGCAT-1_14_38369036_A_G_- AAAGGATTCTAGGCAT-1 14 38369036 A G - 1 1 A>G T>C +AAAGGTAGTATGCTAC-1_11_59775977_G_A_+ AAAGGTAGTATGCTAC-1 11 59775977 G A + 1 1 G>A G>A +AACCATGGTGAGTTTC-1_6_88836165_C_A_- AACCATGGTGAGTTTC-1 6 88836165 C A - 1 1 C>A G>T +AAACGCTGTCATGGCC-1_17_39847403_T_G_- AAACGCTGTCATGGCC-1 17 39847403 T G - 1 2 T>G A>C +AAATGGAAGCCGGATA-1_15_50658440_T_C_- AAATGGAAGCCGGATA-1 15 50658440 T C - 1 1 T>C A>G +AACAACCGTTTCACAG-1_14_75847324_G_T_+ AACAACCGTTTCACAG-1 14 75847324 G T + 1 1 G>T G>T +AAAGGGCCAACTAGAA-1_12_21390300_G_A_- AAAGGGCCAACTAGAA-1 12 21390300 G A - 1 1 G>A C>T +AAATGGACATAATCCG-1_17_39848068_G_A_+ AAATGGACATAATCCG-1 17 39848068 G A + 1 1 G>A G>A +AAAGGGCAGACTACCT-1_16_57391688_T_G_- AAAGGGCAGACTACCT-1 16 57391688 T G - 1 1 T>G A>C +AACCAACAGTCTGCGC-1_14_29467851_G_T_- AACCAACAGTCTGCGC-1 14 29467851 G T - 1 1 G>T C>A +AACCTTTCAGACCTGC-1_7_28822113_A_G_+ AACCTTTCAGACCTGC-1 7 28822113 A G + 1 1 A>G A>G +AACGTCAAGCGAGGAG-1_9_75643398_G_A_- AACGTCAAGCGAGGAG-1 9 75643398 G A - 1 1 G>A C>T +AAACCCAGTTTCGTTT-1_17_39848018_C_T_+ AAACCCAGTTTCGTTT-1 17 39848018 C T + 1 1 C>T C>T +AAAGGTATCACTGAAC-1_17_39848018_C_T_+ AAAGGTATCACTGAAC-1 17 39848018 C T + 1 1 C>T C>T +AACAGGGTCTTCCACG-1_7_87584363_A_C_+ AACAGGGTCTTCCACG-1 7 87584363 A C + 1 1 A>C A>C +AAAGAACCATGCCGCA-1_11_75764686_C_A_+ AAAGAACCATGCCGCA-1 11 75764686 C A + 1 1 C>A C>A +AACCCAACATTCATCT-1_16_29320907_C_T_- AACCCAACATTCATCT-1 16 29320907 C T - 1 1 C>T G>A +AACCCAAGTGTCCACG-1_15_98737934_G_A_- AACCCAAGTGTCCACG-1 15 98737934 G A - 1 1 G>A C>T +AAACGCTGTCAACACT-1_13_108048719_A_C_+ AAACGCTGTCAACACT-1 13 108048719 A C + 1 1 A>C A>C +AACCACATCGGAGATG-1_MT_6651_G_A_+ AACCACATCGGAGATG-1 MT 6651 G A + 1 1 G>A G>A +AACGAAACAGCCCACA-1_17_70963742_A_C_+ AACGAAACAGCCCACA-1 17 70963742 A C + 1 1 A>C A>C +AAACGAAGTTCATCTT-1_5_142904156_G_A_- AAACGAAGTTCATCTT-1 5 142904156 G A - 1 1 G>A C>T +AAGACTCGTGGTACAG-1_11_78182805_G_A_- AAGACTCGTGGTACAG-1 11 78182805 G A - 1 1 G>A C>T +AAAGTCCTCCGATGCG-1_8_93968187_C_T_+ AAAGTCCTCCGATGCG-1 8 93968187 C T + 1 1 C>T C>T +AAACGAACAACCGACC-1_8_79677252_C_G_+ AAACGAACAACCGACC-1 8 79677252 C G + 1 1 C>G C>G +AACCTGATCTAGTACG-1_11_114671776_T_C_+ AACCTGATCTAGTACG-1 11 114671776 T C + 1 1 T>C T>C +AAGACAAAGGATACCG-1_9_121710405_G_T_+ AAGACAAAGGATACCG-1 9 121710405 G T + 1 1 G>T G>T +AAAGGGCGTCCTATAG-1_10_128089065_C_T_+ AAAGGGCGTCCTATAG-1 10 128089065 C T + 1 1 C>T C>T +AAGAACACACAGCCTG-1_17_39848018_C_T_+ AAGAACACACAGCCTG-1 17 39848018 C T + 1 1 C>T C>T +AAACGAAGTGTTTACG-1_5_34451439_C_G_+ AAACGAAGTGTTTACG-1 5 34451439 C G + 1 1 C>G C>G +AAACCCATCGGATAAA-1_MT_7449_T_A_+ AAACCCATCGGATAAA-1 MT 7449 T A + 1 1 T>A T>A +AAAGGTACACCGTGCA-1_13_78228397_C_A_+ AAAGGTACACCGTGCA-1 13 78228397 C A + 1 1 C>A C>A +AACGTCAAGAACTCCT-1_9_3035151_T_A_- AACGTCAAGAACTCCT-1 9 3035151 T A - 1 1 T>A A>T +AACCCAAAGAATTGTG-1_12_29732486_A_G_+ AACCCAAAGAATTGTG-1 12 29732486 A G + 1 1 A>G A>G +AACCTGATCGGATACT-1_12_8497824_A_C_- AACCTGATCGGATACT-1 12 8497824 A C - 1 1 A>C T>G +AAAGTCCTCCAACTGA-1_17_39848018_C_T_+ AAAGTCCTCCAACTGA-1 17 39848018 C T + 1 1 C>T C>T +AACAACCGTAGCCCTG-1_17_39847932_G_T_+ AACAACCGTAGCCCTG-1 17 39847932 G T + 1 1 G>T G>T +AACGTCACATGAATCC-1_17_86655221_C_T_+ AACGTCACATGAATCC-1 17 86655221 C T + 1 1 C>T C>T +AAACGCTCAGTAGGAC-1_9_31149819_G_A_- AAACGCTCAGTAGGAC-1 9 31149819 G A - 1 1 G>A C>T +AAACGCTTCAAAGGAT-1_5_91608789_G_A_+ AAACGCTTCAAAGGAT-1 5 91608789 G A + 1 1 G>A G>A +AAAGAACTCATTACTC-1_11_50200225_G_C_- AAAGAACTCATTACTC-1 11 50200225 G C - 1 1 G>C C>G +AAAGTGACAAATGGCG-1_9_75060131_C_T_+ AAAGTGACAAATGGCG-1 9 75060131 C T + 1 1 C>T C>T +AACCCAATCTTGCAAG-1_4_68809312_T_A_- AACCCAATCTTGCAAG-1 4 68809312 T A - 1 1 T>A A>T +AAATGGACACCATATG-1_2_98666825_C_T_- AAATGGACACCATATG-1 2 98666825 C T - 1 1 C>T G>A +AACACACAGATGGCAC-1_3_28807187_G_T_+ AACACACAGATGGCAC-1 3 28807187 G T + 1 1 G>T G>T +AACGAAAAGCTAAACA-1_7_41478673_A_G_- AACGAAAAGCTAAACA-1 7 41478673 A G - 1 1 A>G T>C +AACCACATCGGAGATG-1_19_53618774_A_C_+ AACCACATCGGAGATG-1 19 53618774 A C + 1 1 A>C A>C +AACGAAAAGCAATTCC-1_17_39848045_G_A_+ AACGAAAAGCAATTCC-1 17 39848045 G A + 1 1 G>A G>A +AACAAGAAGCAATTAG-1_11_51986547_G_A_- AACAAGAAGCAATTAG-1 11 51986547 G A - 1 1 G>A C>T +AAGACTCGTGCGGTAA-1_17_39847374_T_G_+ AAGACTCGTGCGGTAA-1 17 39847374 T G + 1 1 T>G T>G +AACCACAAGTAGTCCT-1_MT_7450_A_G_+ AACCACAAGTAGTCCT-1 MT 7450 A G + 1 1 A>G A>G +AAAGGATCACGCTGCA-1_17_39847403_T_G_+ AAAGGATCACGCTGCA-1 17 39847403 T G + 1 1 T>G T>G +AAGACTCGTTGCTCGG-1_15_102116673_A_G_- AAGACTCGTTGCTCGG-1 15 102116673 A G - 1 1 A>G T>C +AACCTTTCACTCAGAT-1_1_143649849_T_A_+ AACCTTTCACTCAGAT-1 1 143649849 T A + 1 1 T>A T>A +AAGACTCAGAGGGTCT-1_13_29984284_T_C_- AAGACTCAGAGGGTCT-1 13 29984284 T C - 1 1 T>C A>G AACGGGATCAGGAACG-1_19_5802602_G_A_- AACGGGATCAGGAACG-1 19 5802602 G A - 1 2 G>A C>T -AACGTCACACTCCTTG-1_19_44073560_T_A_- AACGTCACACTCCTTG-1 19 44073560 T A - 1 1 T>A A>T -AACTTCTCACTAACGT-1_19_5802657_G_T_- AACTTCTCACTAACGT-1 19 5802657 G T - 1 6 G>T C>A -AAACCCACAGCTAACT-1_19_9984937_A_G_+ AAACCCACAGCTAACT-1 19 9984937 A G + 1 1 A>G A>G -AAACGAATCACTTCTA-1_19_7215265_G_A_- AAACGAATCACTTCTA-1 19 7215265 G A - 1 1 G>A C>T -AAACGCTTCAGCAGAG-1_19_5802157_T_C_- AAACGCTTCAGCAGAG-1 19 5802157 T C - 1 3 T>C A>G -AACGTCAAGCGAGGAG-1_19_9113186_A_G_- AACGTCAAGCGAGGAG-1 19 9113186 A G - 1 1 A>G T>C +AACCACAAGCTTTGTG-1_11_32059052_C_T_+ AACCACAAGCTTTGTG-1 11 32059052 C T + 1 1 C>T C>T +AAACGCTCAGTAGGAC-1_5_145140005_G_T_- AAACGCTCAGTAGGAC-1 5 145140005 G T - 1 1 G>T C>A +AAGATAGCAATAACGA-1_9_21226289_A_G_+ AAGATAGCAATAACGA-1 9 21226289 A G + 1 1 A>G A>G +AACCAACGTCCCTGTT-1_4_129111630_G_A_- AACCAACGTCCCTGTT-1 4 129111630 G A - 1 1 G>A C>T +AAAGTCCTCCTACAAG-1_4_43032667_T_C_- AAAGTCCTCCTACAAG-1 4 43032667 T C - 1 1 T>C A>G +AAGACAATCTTAGGAC-1_13_60175375_A_G_- AAGACAATCTTAGGAC-1 13 60175375 A G - 1 1 A>G T>C +AAACGCTTCTGCTTAT-1_14_8055809_G_A_+ AAACGCTTCTGCTTAT-1 14 8055809 G A + 1 1 G>A G>A +AAACGCTCAGTAGGAC-1_11_57084112_T_G_+ AAACGCTCAGTAGGAC-1 11 57084112 T G + 1 1 T>G T>G +AACCACAAGCCTTTCC-1_15_79667481_A_C_+ AACCACAAGCCTTTCC-1 15 79667481 A C + 1 1 A>C A>C +AAACCCAGTCAAATCC-1_13_93487546_A_G_- AAACCCAGTCAAATCC-1 13 93487546 A G - 1 1 A>G T>C +AAAGGGCCAACACAGG-1_5_121947989_C_G_- AAAGGGCCAACACAGG-1 5 121947989 C G - 1 1 C>G G>C +AAACCCACATATCTGG-1_6_40056799_C_T_+ AAACCCACATATCTGG-1 6 40056799 C T + 1 1 C>T C>T +AAGACTCCACATACTG-1_8_94152752_C_T_+ AAGACTCCACATACTG-1 8 94152752 C T + 1 1 C>T C>T +AACGAAATCCTGTAAG-1_7_80349540_T_C_- AACGAAATCCTGTAAG-1 7 80349540 T C - 1 1 T>C A>G +AAACCCACAATCTCTT-1_MT_8301_T_C_+ AAACCCACAATCTCTT-1 MT 8301 T C + 1 1 T>C T>C +AACAAAGAGCCGATTT-1_14_124454918_T_C_- AACAAAGAGCCGATTT-1 14 124454918 T C - 1 1 T>C A>G +AACAACCAGTTACTCG-1_17_39847607_T_C_- AACAACCAGTTACTCG-1 17 39847607 T C - 1 1 T>C A>G +AAAGAACCATGCCGCA-1_11_75764690_C_T_+ AAAGAACCATGCCGCA-1 11 75764690 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_13_99421655_G_A_- AACCACAAGCTTTGTG-1 13 99421655 G A - 1 1 G>A C>T +AACAAGACATGGCTGC-1_9_3000561_T_A_- AACAAGACATGGCTGC-1 9 3000561 T A - 1 1 T>A A>T +AAAGTCCTCCCAGCGA-1_9_3004626_A_T_- AAAGTCCTCCCAGCGA-1 9 3004626 A T - 1 1 A>T T>A +AACCTGAGTCCAGTTA-1_9_114982397_A_T_- AACCTGAGTCCAGTTA-1 9 114982397 A T - 1 1 A>T T>A +AAAGTGACAACACAAA-1_17_39847435_A_G_+ AAAGTGACAACACAAA-1 17 39847435 A G + 1 1 A>G A>G +AACAAAGGTTCAAACC-1_9_3037753_G_A_- AACAAAGGTTCAAACC-1 9 3037753 G A - 1 1 G>A C>T +AACCAACCAGTCGCTG-1_16_94468850_C_T_+ AACCAACCAGTCGCTG-1 16 94468850 C T + 1 1 C>T C>T +AAAGTCCAGCACAAAT-1_1_180437497_G_C_- AAAGTCCAGCACAAAT-1 1 180437497 G C - 1 1 G>C C>G +AACAACCGTCATCGGC-1_7_34202322_G_A_- AACAACCGTCATCGGC-1 7 34202322 G A - 1 1 G>A C>T +AAGATAGGTCATCAGT-1_16_66661553_C_T_- AAGATAGGTCATCAGT-1 16 66661553 C T - 1 1 C>T G>A +AACGTCACACGAGGTA-1_12_31331774_A_T_- AACGTCACACGAGGTA-1 12 31331774 A T - 1 1 A>T T>A +AAAGGATCACGTAGTT-1_15_78428761_T_G_+ AAAGGATCACGTAGTT-1 15 78428761 T G + 1 1 T>G T>G +AACCATGGTTTCGTGA-1_1_150108132_T_A_+ AACCATGGTTTCGTGA-1 1 150108132 T A + 1 1 T>A T>A +AAACCCACAATCTCTT-1_4_129839386_T_C_+ AAACCCACAATCTCTT-1 4 129839386 T C + 1 1 T>C T>C AAGATAGCACGCGTGT-1_19_4113714_G_A_+ AAGATAGCACGCGTGT-1 19 4113714 G A + 1 1 G>A G>A -AACCACAAGTTGCCTA-1_19_5802082_C_A_- AACCACAAGTTGCCTA-1 19 5802082 C A - 1 3 C>A G>T -AAGACAAGTCGAATTC-1_19_42191423_A_C_+ AAGACAAGTCGAATTC-1 19 42191423 A C + 1 1 A>C A>C -AACGTCACACGCTGAC-1_19_5801944_C_T_- AACGTCACACGCTGAC-1 19 5801944 C T - 1 1 C>T G>A -AACCCAATCCTCTAGC-1_19_5802659_T_G_- AACCCAATCCTCTAGC-1 19 5802659 T G - 1 2 T>G A>C -AACAAGAAGTAAACTG-1_19_5802635_T_A_- AACAAGAAGTAAACTG-1 19 5802635 T A - 1 2 T>A A>T -AACGGGAAGTTGCCCG-1_19_5463847_C_T_+ AACGGGAAGTTGCCCG-1 19 5463847 C T + 1 1 C>T C>T -AAGAACATCTCCGAAA-1_19_5802188_T_A_- AAGAACATCTCCGAAA-1 19 5802188 T A - 1 4 T>A A>T -AAGACTCTCGAGTACT-1_19_6340700_C_T_+ AAGACTCTCGAGTACT-1 19 6340700 C T + 1 1 C>T C>T -AACCACAGTGTTCCTC-1_19_21392341_G_A_- AACCACAGTGTTCCTC-1 19 21392341 G A - 1 1 G>A C>T +AAAGTCCAGTCGGCCT-1_19_9984909_C_T_+ AAAGTCCAGTCGGCCT-1 19 9984909 C T + 1 3 C>T C>T +AAGATAGCAATAACGA-1_9_121489886_A_G_- AAGATAGCAATAACGA-1 9 121489886 A G - 1 2 A>G T>C +AACCTTTAGGGTATAT-1_9_3020457_T_A_- AACCTTTAGGGTATAT-1 9 3020457 T A - 1 1 T>A A>T +AAGACTCGTCAAGTTC-1_9_3002321_G_T_- AAGACTCGTCAAGTTC-1 9 3002321 G T - 1 1 G>T C>A +AAAGTCCTCCTACAAG-1_4_155616726_G_T_- AAAGTCCTCCTACAAG-1 4 155616726 G T - 1 1 G>T C>A +AAAGAACAGTCGCGAA-1_11_36628769_T_A_- AAAGAACAGTCGCGAA-1 11 36628769 T A - 1 1 T>A A>T +AACAAAGGTAGGGTAC-1_19_6977028_T_C_+ AACAAAGGTAGGGTAC-1 19 6977028 T C + 1 1 T>C T>C +AACAGGGGTGCACATT-1_7_15917473_C_A_- AACAGGGGTGCACATT-1 7 15917473 C A - 1 1 C>A G>T +AAGACAAAGGGCAAGG-1_1_71585674_A_G_- AAGACAAAGGGCAAGG-1 1 71585674 A G - 1 1 A>G T>C +AACTTCTGTAGCACGA-1_5_146261076_T_C_+ AACTTCTGTAGCACGA-1 5 146261076 T C + 1 1 T>C T>C +AACAAAGAGAATCTAG-1_11_120292049_C_T_+ AACAAAGAGAATCTAG-1 11 120292049 C T + 1 1 C>T C>T +AAGACTCGTATCTCTT-1_17_70963798_T_C_+ AAGACTCGTATCTCTT-1 17 70963798 T C + 1 1 T>C T>C +AAAGTCCCACCACATA-1_2_83876685_C_A_+ AAAGTCCCACCACATA-1 2 83876685 C A + 1 1 C>A C>A +AACAAGAAGCAATTAG-1_6_135713321_T_C_- AACAAGAAGCAATTAG-1 6 135713321 T C - 1 1 T>C A>G +AAACGCTCAGTAGGAC-1_17_24721040_T_C_+ AAACGCTCAGTAGGAC-1 17 24721040 T C + 1 1 T>C T>C +AAGACTCTCGGAGATG-1_17_13822342_C_A_+ AAGACTCTCGGAGATG-1 17 13822342 C A + 1 1 C>A C>A +AAAGTCCAGCGGACAT-1_6_88513707_A_T_- AAAGTCCAGCGGACAT-1 6 88513707 A T - 1 1 A>T T>A +AACAGGGGTCGTGATT-1_9_123462100_A_T_+ AACAGGGGTCGTGATT-1 9 123462100 A T + 1 1 A>T A>T +AAGAACAAGAAGGGAT-1_5_146261080_C_A_+ AAGAACAAGAAGGGAT-1 5 146261080 C A + 1 1 C>A C>A +AACCATGTCCTCGCAT-1_17_39848018_C_T_+ AACCATGTCCTCGCAT-1 17 39848018 C T + 1 1 C>T C>T +AACCTGACATCGTCCT-1_7_144921020_C_T_+ AACCTGACATCGTCCT-1 7 144921020 C T + 1 1 C>T C>T +AACGAAAAGGTGATAT-1_17_39848018_C_T_+ AACGAAAAGGTGATAT-1 17 39848018 C T + 1 1 C>T C>T +AACCTTTCAGTAACAA-1_3_51407401_T_C_- AACCTTTCAGTAACAA-1 3 51407401 T C - 1 1 T>C A>G +AAACGAAAGGTAGTCG-1_17_39848018_C_T_+ AAACGAAAGGTAGTCG-1 17 39848018 C T + 1 1 C>T C>T +AACCAACCAGTCGCTG-1_16_94468921_C_T_+ AACCAACCAGTCGCTG-1 16 94468921 C T + 1 1 C>T C>T +AACACACGTGTTGCCG-1_4_3835228_T_C_- AACACACGTGTTGCCG-1 4 3835228 T C - 1 1 T>C A>G +AAGAACAGTTGGAGGT-1_11_61448494_C_T_- AAGAACAGTTGGAGGT-1 11 61448494 C T - 1 1 C>T G>A +AAACGAAAGTTCCATG-1_19_55296519_G_A_+ AAACGAAAGTTCCATG-1 19 55296519 G A + 1 1 G>A G>A +AAAGTCCAGTCGGCCT-1_2_26913032_C_T_+ AAAGTCCAGTCGGCCT-1 2 26913032 C T + 1 1 C>T C>T +AAGAACAAGAAGGGAT-1_5_146261106_C_G_+ AAGAACAAGAAGGGAT-1 5 146261106 C G + 1 1 C>G C>G +AAACCCATCGGATAAA-1_9_121756690_T_C_+ AAACCCATCGGATAAA-1 9 121756690 T C + 1 1 T>C T>C +AAAGGATGTGCTCGTG-1_5_36795107_G_T_- AAAGGATGTGCTCGTG-1 5 36795107 G T - 1 1 G>T C>A +AACGGGAAGTTGCCCG-1_4_107200690_T_G_+ AACGGGAAGTTGCCCG-1 4 107200690 T G + 1 1 T>G T>G +AAGACAAAGGCCCACT-1_16_57391685_G_A_- AAGACAAAGGCCCACT-1 16 57391685 G A - 1 1 G>A C>T AAAGTCCAGTCGGCCT-1_19_9984951_C_T_+ AAAGTCCAGTCGGCCT-1 19 9984951 C T + 1 1 C>T C>T -AAGAACAGTCGGCTAC-1_19_7198307_G_A_- AAGAACAGTCGGCTAC-1 19 7198307 G A - 1 1 G>A C>T -AACTTCTCAGGACTTT-1_19_9123942_C_G_- AACTTCTCAGGACTTT-1 19 9123942 C G - 1 1 C>G G>C -AACAAGAAGTAAACTG-1_19_5802632_T_A_- AACAAGAAGTAAACTG-1 19 5802632 T A - 1 2 T>A A>T -AAGACTCCAACACAGG-1_19_29715492_A_C_- AAGACTCCAACACAGG-1 19 29715492 A C - 1 1 A>C T>G -AACTTCTAGGGATCTG-1_19_5107932_A_G_- AACTTCTAGGGATCTG-1 19 5107932 A G - 1 1 A>G T>C -AACTTCTAGGGATCTG-1_19_5107937_C_G_- AACTTCTAGGGATCTG-1 19 5107937 C G - 1 1 C>G G>C +AACGTCACATAGATGA-1_14_124607522_A_C_- AACGTCACATAGATGA-1 14 124607522 A C - 1 1 A>C T>G +AAAGGATGTGCTCGTG-1_5_112337454_A_G_- AAAGGATGTGCTCGTG-1 5 112337454 A G - 1 1 A>G T>C +AACAGGGCAAACTCGT-1_X_136838203_C_A_+ AACAGGGCAAACTCGT-1 X 136838203 C A + 1 3 C>A C>A +AACCACAAGCTTTGTG-1_9_64185854_G_A_- AACCACAAGCTTTGTG-1 9 64185854 G A - 1 1 G>A C>T +AAGACAAAGGGCAGGA-1_7_49115483_A_G_+ AAGACAAAGGGCAGGA-1 7 49115483 A G + 1 1 A>G A>G +AAAGGATAGTGGGAAA-1_14_44614131_C_T_- AAAGGATAGTGGGAAA-1 14 44614131 C T - 1 1 C>T G>A +AACAACCAGTTACTCG-1_1_153487652_T_C_- AACAACCAGTTACTCG-1 1 153487652 T C - 1 1 T>C A>G +AACCTTTTCCGTGTGG-1_X_136837671_A_G_+ AACCTTTTCCGTGTGG-1 X 136837671 A G + 1 1 A>G A>G +AACGGGAGTGGTTCTA-1_7_45175856_T_G_+ AACGGGAGTGGTTCTA-1 7 45175856 T G + 1 1 T>G T>G +AAAGGGCTCTGCTAGA-1_3_121232621_A_G_- AAAGGGCTCTGCTAGA-1 3 121232621 A G - 1 1 A>G T>C +AACTTCTAGAGGTCGT-1_2_124667521_T_C_+ AACTTCTAGAGGTCGT-1 2 124667521 T C + 1 1 T>C T>C +AAACCCACACCGTGGT-1_7_16915463_G_T_- AAACCCACACCGTGGT-1 7 16915463 G T - 1 1 G>T C>A +AACAACCGTATGTCTG-1_18_33192790_A_G_+ AACAACCGTATGTCTG-1 18 33192790 A G + 1 1 A>G A>G +AACAACCAGTAATACG-1_12_109561857_A_T_+ AACAACCAGTAATACG-1 12 109561857 A T + 1 1 A>T A>T +AAGACAATCGCGTCGA-1_X_167207284_C_T_- AAGACAATCGCGTCGA-1 X 167207284 C T - 1 1 C>T G>A +AAGACTCGTTGCTCGG-1_3_10016107_A_G_+ AAGACTCGTTGCTCGG-1 3 10016107 A G + 1 1 A>G A>G +AACCAACAGGTCACTT-1_MT_10083_C_G_+ AACCAACAGGTCACTT-1 MT 10083 C G + 1 1 C>G C>G +AACGGGAAGTGCCGAA-1_17_33952094_G_A_- AACGGGAAGTGCCGAA-1 17 33952094 G A - 1 1 G>A C>T +AAAGTCCCAACCAGAG-1_16_57391679_G_T_- AAAGTCCCAACCAGAG-1 16 57391679 G T - 1 1 G>T C>A +AAACGCTCAGTAGGAC-1_15_34441289_G_A_- AAACGCTCAGTAGGAC-1 15 34441289 G A - 1 1 G>A C>T +AACTTCTAGCAGATAT-1_3_57845320_A_G_- AACTTCTAGCAGATAT-1 3 57845320 A G - 1 1 A>G T>C +AACTTCTCACACGTGC-1_11_102478227_T_G_- AACTTCTCACACGTGC-1 11 102478227 T G - 1 1 T>G A>C +AACTTCTCAGAAACCG-1_1_167606554_T_A_+ AACTTCTCAGAAACCG-1 1 167606554 T A + 1 1 T>A T>A +AAAGTCCAGTCGGCCT-1_3_117319213_C_T_- AAAGTCCAGTCGGCCT-1 3 117319213 C T - 1 1 C>T G>A +AAAGTCCCAGAGGACT-1_5_33027644_C_T_+ AAAGTCCCAGAGGACT-1 5 33027644 C T + 1 1 C>T C>T +AAATGGACACCCGTAG-1_17_39848018_C_T_+ AAATGGACACCCGTAG-1 17 39848018 C T + 1 1 C>T C>T +AAATGGAAGTAGAATC-1_11_62552992_A_T_+ AAATGGAAGTAGAATC-1 11 62552992 A T + 1 1 A>T A>T +AACCTGACATGAGATA-1_17_39848018_C_T_+ AACCTGACATGAGATA-1 17 39848018 C T + 1 1 C>T C>T +AAAGAACTCTCACCCA-1_7_28399141_G_A_+ AAAGAACTCTCACCCA-1 7 28399141 G A + 1 1 G>A G>A +AACCACAAGCTTTGTG-1_8_70597635_G_A_- AACCACAAGCTTTGTG-1 8 70597635 G A - 1 1 G>A C>T +AACCACATCGGAGATG-1_5_30877403_T_C_+ AACCACATCGGAGATG-1 5 30877403 T C + 1 1 T>C T>C +AAACGAAAGGCTTTCA-1_15_34441311_G_A_- AAACGAAAGGCTTTCA-1 15 34441311 G A - 1 1 G>A C>T +AACGTCACACTCCTTG-1_11_106066805_T_C_+ AACGTCACACTCCTTG-1 11 106066805 T C + 1 1 T>C T>C +AACCAACTCAGTGGGA-1_4_102971998_C_T_+ AACCAACTCAGTGGGA-1 4 102971998 C T + 1 1 C>T C>T +AAAGGGCCAACTAGAA-1_X_162413761_A_T_- AAAGGGCCAACTAGAA-1 X 162413761 A T - 1 1 A>T T>A +AAATGGACACCATATG-1_2_98666780_T_A_- AAATGGACACCATATG-1 2 98666780 T A - 1 1 T>A A>T +AACGTCATCCATCTAT-1_9_3000575_C_T_- AACGTCATCCATCTAT-1 9 3000575 C T - 1 1 C>T G>A +AACAAGAAGCAATTAG-1_5_122453687_G_A_- AACAAGAAGCAATTAG-1 5 122453687 G A - 1 1 G>A C>T +AACACACGTAGACTGG-1_9_123461940_T_G_+ AACACACGTAGACTGG-1 9 123461940 T G + 1 1 T>G T>G +AAAGTCCAGTCGGCCT-1_5_33027644_C_T_+ AAAGTCCAGTCGGCCT-1 5 33027644 C T + 1 1 C>T C>T +AAACCCATCCACACAA-1_X_136837263_T_G_+ AAACCCATCCACACAA-1 X 136837263 T G + 1 1 T>G T>G +AAAGTCCTCCTACAAG-1_10_128625212_G_A_- AAAGTCCTCCTACAAG-1 10 128625212 G A - 1 1 G>A C>T +AAGACAAAGTCGAATA-1_17_39848100_A_T_+ AAGACAAAGTCGAATA-1 17 39848100 A T + 1 1 A>T A>T +AACCTGATCTTCCACG-1_9_73013566_A_G_+ AACCTGATCTTCCACG-1 9 73013566 A G + 1 1 A>G A>G +AAGAACAAGAAGGGAT-1_9_36878716_C_A_+ AAGAACAAGAAGGGAT-1 9 36878716 C A + 1 1 C>A C>A +AAGACTCTCGGAGATG-1_13_54592627_G_A_- AAGACTCTCGGAGATG-1 13 54592627 G A - 1 1 G>A C>T +AACCCAAAGAATTGTG-1_2_148871881_C_T_- AACCCAAAGAATTGTG-1 2 148871881 C T - 1 1 C>T G>A +AACCTTTTCTTTCGAT-1_9_3000319_T_A_- AACCTTTTCTTTCGAT-1 9 3000319 T A - 1 1 T>A A>T +AACCACATCGTCAGAT-1_17_39847203_T_C_- AACCACATCGTCAGAT-1 17 39847203 T C - 1 1 T>C A>G +AAACCCAAGTTTAGGA-1_6_4624270_G_A_+ AAACCCAAGTTTAGGA-1 6 4624270 G A + 1 1 G>A G>A +AACCTTTTCCTCGCAT-1_17_39848018_C_T_+ AACCTTTTCCTCGCAT-1 17 39848018 C T + 1 1 C>T C>T +AACACACTCGTAGCCG-1_12_78350929_T_C_+ AACACACTCGTAGCCG-1 12 78350929 T C + 1 1 T>C T>C +AAAGGATTCTAGGCAT-1_2_24729158_G_T_- AAAGGATTCTAGGCAT-1 2 24729158 G T - 1 1 G>T C>A +AACCCAAGTTTCCATT-1_7_141996912_G_A_+ AACCCAAGTTTCCATT-1 7 141996912 G A + 1 1 G>A G>A +AACACACAGTGCACAG-1_15_18862541_T_A_+ AACACACAGTGCACAG-1 15 18862541 T A + 1 1 T>A T>A +AACACACCATAACGGG-1_17_39847607_T_C_+ AACACACCATAACGGG-1 17 39847607 T C + 1 1 T>C T>C +AAAGAACCAGCAAGAC-1_9_3014289_T_A_- AAAGAACCAGCAAGAC-1 9 3014289 T A - 1 1 T>A A>T +AACGAAAAGCAATTCC-1_17_78508115_C_A_+ AACGAAAAGCAATTCC-1 17 78508115 C A + 1 1 C>A C>A +AACAACCAGACGACTG-1_19_6530847_G_C_- AACAACCAGACGACTG-1 19 6530847 G C - 1 1 G>C C>G +AAAGTCCGTGACTGTT-1_7_100640030_C_T_+ AAAGTCCGTGACTGTT-1 7 100640030 C T + 1 1 C>T C>T +AAGACAAAGATGCTAA-1_16_92078985_A_G_+ AAGACAAAGATGCTAA-1 16 92078985 A G + 1 1 A>G A>G +AACAGGGTCGGTCGGT-1_2_91213952_C_T_+ AACAGGGTCGGTCGGT-1 2 91213952 C T + 1 1 C>T C>T +AACCTGACAAACCACT-1_9_107945372_G_T_+ AACCTGACAAACCACT-1 9 107945372 G T + 1 1 G>T G>T +AACCCAACAGATACTC-1_9_3027792_C_G_+ AACCCAACAGATACTC-1 9 3027792 C G + 1 1 C>G C>G +AACACACAGGATCACG-1_9_123462100_A_T_+ AACACACAGGATCACG-1 9 123462100 A T + 1 1 A>T A>T +AAAGTCCAGGAGAGTA-1_9_49042163_A_G_+ AAAGTCCAGGAGAGTA-1 9 49042163 A G + 1 1 A>G A>G +AAATGGACATAATCCG-1_17_39848018_C_T_+ AAATGGACATAATCCG-1 17 39848018 C T + 1 1 C>T C>T +AACCAACGTCACCCTT-1_9_3000600_G_A_- AACCAACGTCACCCTT-1 9 3000600 G A - 1 1 G>A C>T +AACGGGAGTTCAATCG-1_11_101971370_A_G_- AACGGGAGTTCAATCG-1 11 101971370 A G - 1 1 A>G T>C +AAGACAAGTCGAATTC-1_8_55060118_C_T_+ AAGACAAGTCGAATTC-1 8 55060118 C T + 1 1 C>T C>T +AACAAGAGTATACAGA-1_17_39847435_A_G_+ AACAAGAGTATACAGA-1 17 39847435 A G + 1 1 A>G A>G +AACCATGGTCTACAAC-1_9_70554648_T_C_+ AACCATGGTCTACAAC-1 9 70554648 T C + 1 1 T>C T>C +AAAGGATTCTCATGCC-1_17_39848018_C_T_+ AAAGGATTCTCATGCC-1 17 39848018 C T + 1 1 C>T C>T +AAGAACAGTAAGATAC-1_14_10324714_G_A_- AAGAACAGTAAGATAC-1 14 10324714 G A - 1 1 G>A C>T +AACAACCAGTAATACG-1_5_108434380_G_A_- AACAACCAGTAATACG-1 5 108434380 G A - 1 1 G>A C>T +AAAGGTAGTCGAATTC-1_10_111508273_T_C_+ AAAGGTAGTCGAATTC-1 10 111508273 T C + 1 1 T>C T>C +AACCATGGTAGGTTTC-1_17_39847403_T_G_+ AACCATGGTAGGTTTC-1 17 39847403 T G + 1 1 T>G T>G +AAACCCAAGAACTTCC-1_13_54551374_G_A_- AAACCCAAGAACTTCC-1 13 54551374 G A - 1 1 G>A C>T +AAATGGAGTAGTGTGG-1_16_57391551_T_A_- AAATGGAGTAGTGTGG-1 16 57391551 T A - 1 1 T>A A>T +AACGGGAGTTGCTCGG-1_9_96823414_A_T_- AACGGGAGTTGCTCGG-1 9 96823414 A T - 1 1 A>T T>A +AACGGGATCCGCAACG-1_9_37544537_G_A_- AACGGGATCCGCAACG-1 9 37544537 G A - 1 1 G>A C>T +AAGATAGCACGCGTGT-1_X_167207338_C_A_- AAGATAGCACGCGTGT-1 X 167207338 C A - 1 2 C>A G>T +AAGAACAGTTGCAAGG-1_4_124855309_G_A_- AAGAACAGTTGCAAGG-1 4 124855309 G A - 1 1 G>A C>T +AAGAACACAACCGCTG-1_13_55498456_G_T_- AAGAACACAACCGCTG-1 13 55498456 G T - 1 1 G>T C>A +AACGGGAAGTCCCTAA-1_5_24482990_C_T_+ AACGGGAAGTCCCTAA-1 5 24482990 C T + 1 1 C>T C>T +AAAGTCCTCCGATGCG-1_X_136838294_T_C_+ AAAGTCCTCCGATGCG-1 X 136838294 T C + 1 2 T>C T>C +AAACGCTAGCCTCTCT-1_15_99409609_C_T_+ AAACGCTAGCCTCTCT-1 15 99409609 C T + 1 1 C>T C>T +AACCTGACATGAGATA-1_3_157536358_G_T_+ AACCTGACATGAGATA-1 3 157536358 G T + 1 1 G>T G>T +AACCCAAGTAGCACGA-1_9_37386340_A_G_+ AACCCAAGTAGCACGA-1 9 37386340 A G + 1 1 A>G A>G +AACCAACAGGTCACTT-1_MT_7579_A_T_+ AACCAACAGGTCACTT-1 MT 7579 A T + 1 2 A>T A>T +AAAGGTACACCGTGCA-1_9_3000591_C_T_- AAAGGTACACCGTGCA-1 9 3000591 C T - 1 1 C>T G>A +AAACGCTCAGTAGGAC-1_4_155559121_C_T_+ AAACGCTCAGTAGGAC-1 4 155559121 C T + 1 1 C>T C>T +AACGTCAAGCTAAACA-1_3_29329595_C_T_+ AACGTCAAGCTAAACA-1 3 29329595 C T + 1 1 C>T C>T +AACGAAAGTCCAAATC-1_17_65580298_T_G_- AACGAAAGTCCAAATC-1 17 65580298 T G - 1 1 T>G A>C +AAACGAAGTCATCACA-1_17_39847607_T_C_+ AAACGAAGTCATCACA-1 17 39847607 T C + 1 1 T>C T>C +AACCCAAAGCAAATGT-1_1_80721418_A_G_- AACCCAAAGCAAATGT-1 1 80721418 A G - 1 1 A>G T>C +AACGTCACAAAGAGTT-1_11_36437110_G_A_- AACGTCACAAAGAGTT-1 11 36437110 G A - 1 1 G>A C>T +AACAAGATCTGCTTTA-1_4_63550060_T_C_+ AACAAGATCTGCTTTA-1 4 63550060 T C + 1 1 T>C T>C +AACCAACAGCGAAACC-1_6_45381474_T_C_+ AACCAACAGCGAAACC-1 6 45381474 T C + 1 1 T>C T>C +AACGAAATCCATGATG-1_17_39847221_A_C_+ AACGAAATCCATGATG-1 17 39847221 A C + 1 1 A>C A>C +AAACCCAGTAGGACTG-1_2_26953605_C_A_- AAACCCAGTAGGACTG-1 2 26953605 C A - 1 1 C>A G>T +AACAAGAAGCATACTC-1_9_3000513_C_T_- AACAAGAAGCATACTC-1 9 3000513 C T - 1 1 C>T G>A +AAGAACAGTTCGGTTA-1_4_154872835_A_G_+ AAGAACAGTTCGGTTA-1 4 154872835 A G + 1 1 A>G A>G +AACAGGGGTGCACATT-1_17_39848062_C_T_+ AACAGGGGTGCACATT-1 17 39848062 C T + 1 1 C>T C>T +AAGAACAGTTGCTCCT-1_4_149176458_T_C_- AAGAACAGTTGCTCCT-1 4 149176458 T C - 1 1 T>C A>G +AACGGGAGTCAGGCAA-1_1_63047872_G_A_- AACGGGAGTCAGGCAA-1 1 63047872 G A - 1 1 G>A C>T +AACCTTTAGACCATAA-1_2_127298792_C_T_+ AACCTTTAGACCATAA-1 2 127298792 C T + 1 1 C>T C>T +AACACACAGTAAGAGG-1_16_94442672_G_A_+ AACACACAGTAAGAGG-1 16 94442672 G A + 1 1 G>A G>A +AAACCCAGTACGGGAT-1_11_98769004_G_A_+ AAACCCAGTACGGGAT-1 11 98769004 G A + 1 1 G>A G>A +AACAAAGTCTGAGAAA-1_4_108043954_G_A_- AACAAAGTCTGAGAAA-1 4 108043954 G A - 1 1 G>A C>T +AAAGGATCACGTAGTT-1_15_78428783_C_A_+ AAAGGATCACGTAGTT-1 15 78428783 C A + 1 1 C>A C>A +AACCCAAAGAATTGTG-1_15_98950056_T_C_- AACCCAAAGAATTGTG-1 15 98950056 T C - 1 1 T>C A>G +AACTTCTCATGAATAG-1_7_98717302_A_G_+ AACTTCTCATGAATAG-1 7 98717302 A G + 1 1 A>G A>G +AAACGCTCACCGGAAA-1_9_119465409_C_T_+ AAACGCTCACCGGAAA-1 9 119465409 C T + 1 1 C>T C>T +AACCAACGTTCTAAGC-1_12_89706318_T_C_+ AACCAACGTTCTAAGC-1 12 89706318 T C + 1 1 T>C T>C +AAAGGGCAGACTACCT-1_16_57391520_G_A_- AAAGGGCAGACTACCT-1 16 57391520 G A - 1 1 G>A C>T +AAGACAAGTTTATGCG-1_2_5379332_A_T_- AAGACAAGTTTATGCG-1 2 5379332 A T - 1 1 A>T T>A +AAAGGATGTACCATAC-1_11_117077097_T_C_+ AAAGGATGTACCATAC-1 11 117077097 T C + 1 1 T>C T>C +AAACCCACACCGTGGT-1_15_83126084_C_A_- AAACCCACACCGTGGT-1 15 83126084 C A - 1 1 C>A G>T +AACGTCAAGCTAAACA-1_17_39847015_G_A_+ AACGTCAAGCTAAACA-1 17 39847015 G A + 1 1 G>A G>A +AACCTTTCACACCTGG-1_14_34822673_T_C_+ AACCTTTCACACCTGG-1 14 34822673 T C + 1 1 T>C T>C +AAAGTGACAAATGGCG-1_7_129606533_G_A_+ AAAGTGACAAATGGCG-1 7 129606533 G A + 1 1 G>A G>A +AACACACCATCGTCCT-1_7_57800568_T_G_+ AACACACCATCGTCCT-1 7 57800568 T G + 1 1 T>G T>G +AAGATAGCACGCGTGT-1_10_108583159_G_T_- AAGATAGCACGCGTGT-1 10 108583159 G T - 1 1 G>T C>A +AAACCCAAGATTGCGG-1_19_10629660_C_T_+ AAACCCAAGATTGCGG-1 19 10629660 C T + 1 1 C>T C>T +AAGACAAAGAGTTCGG-1_3_55470003_G_A_+ AAGACAAAGAGTTCGG-1 3 55470003 G A + 1 1 G>A G>A +AAAGGATGTGCTCGTG-1_7_16915533_G_A_- AAAGGATGTGCTCGTG-1 7 16915533 G A - 1 1 G>A C>T +AAAGTCCGTACTAACC-1_13_55597032_T_A_+ AAAGTCCGTACTAACC-1 13 55597032 T A + 1 1 T>A T>A +AACCAACGTCACCCTT-1_9_3000527_T_C_- AACCAACGTCACCCTT-1 9 3000527 T C - 1 1 T>C A>G +AAATGGAAGCCGGATA-1_15_50658430_C_T_- AAATGGAAGCCGGATA-1 15 50658430 C T - 1 1 C>T G>A +AACAGGGTCTTCCACG-1_4_137729790_C_T_+ AACAGGGTCTTCCACG-1 4 137729790 C T + 1 1 C>T C>T +AAGATAGGTCATCAGT-1_1_60479252_A_G_+ AAGATAGGTCATCAGT-1 1 60479252 A G + 1 1 A>G A>G +AACGTCAAGCGCCTTG-1_6_72957986_T_A_- AACGTCAAGCGCCTTG-1 6 72957986 T A - 1 1 T>A A>T +AAACCCACAGAGGAAA-1_17_70963667_A_C_+ AAACCCACAGAGGAAA-1 17 70963667 A C + 1 1 A>C A>C +AACGTCATCTGGCTGG-1_3_84160727_T_C_- AACGTCATCTGGCTGG-1 3 84160727 T C - 1 1 T>C A>G +AAACCCACACAAAGTA-1_4_86984021_G_A_- AAACCCACACAAAGTA-1 4 86984021 G A - 1 1 G>A C>T +AACAGGGGTGCACATT-1_6_97211261_T_G_+ AACAGGGGTGCACATT-1 6 97211261 T G + 1 1 T>G T>G +AACCCAAGTGTCCACG-1_15_98737884_G_A_- AACCCAAGTGTCCACG-1 15 98737884 G A - 1 1 G>A C>T +AACGGGACATCATTTC-1_9_44920705_G_A_- AACGGGACATCATTTC-1 9 44920705 G A - 1 1 G>A C>T +AACTTCTTCGGTCGGT-1_10_57515988_G_A_- AACTTCTTCGGTCGGT-1 10 57515988 G A - 1 1 G>A C>T +AAACCCATCCACACAA-1_X_136837262_T_G_+ AAACCCATCCACACAA-1 X 136837262 T G + 1 1 T>G T>G +AACCACACAGCTGAGA-1_17_39847426_T_C_- AACCACACAGCTGAGA-1 17 39847426 T C - 1 1 T>C A>G +AACCCAAAGAATTGTG-1_12_84143508_T_A_+ AACCCAAAGAATTGTG-1 12 84143508 T A + 1 1 T>A T>A +AAGACTCCACCCGTAG-1_1_9626954_C_T_+ AAGACTCCACCCGTAG-1 1 9626954 C T + 1 1 C>T C>T +AACGGGAAGTTGCCCG-1_4_56957259_G_A_- AACGGGAAGTTGCCCG-1 4 56957259 G A - 1 1 G>A C>T +AAACGCTTCTGCTTAT-1_9_3014318_A_T_- AAACGCTTCTGCTTAT-1 9 3014318 A T - 1 1 A>T T>A +AAACGCTCAGTAGGAC-1_10_72674780_C_T_+ AAACGCTCAGTAGGAC-1 10 72674780 C T + 1 1 C>T C>T +AAAGTCCAGTGGGAAA-1_9_40291572_C_T_+ AAAGTCCAGTGGGAAA-1 9 40291572 C T + 1 1 C>T C>T +AAAGGTACAAATACAG-1_1_91932731_G_T_- AAAGGTACAAATACAG-1 1 91932731 G T - 1 1 G>T C>A +AACCACAAGACTTGTC-1_17_24721157_T_C_+ AACCACAAGACTTGTC-1 17 24721157 T C + 1 1 T>C T>C +AAGACTCCACATACTG-1_5_146261080_C_A_+ AAGACTCCACATACTG-1 5 146261080 C A + 1 1 C>A C>A +AACCACAGTGTTCCTC-1_9_3000585_C_A_- AACCACAGTGTTCCTC-1 9 3000585 C A - 1 1 C>A G>T +AAAGGTAGTCGAATTC-1_X_136836392_A_C_+ AAAGGTAGTCGAATTC-1 X 136836392 A C + 1 1 A>C A>C +AACCCAAAGGGCATGT-1_9_123461940_T_G_+ AACCCAAAGGGCATGT-1 9 123461940 T G + 1 1 T>G T>G +AACTTCTAGGGATCTG-1_10_49326724_T_C_- AACTTCTAGGGATCTG-1 10 49326724 T C - 1 1 T>C A>G +AAAGTCCCACAAATGA-1_15_77993652_G_A_- AAAGTCCCACAAATGA-1 15 77993652 G A - 1 1 G>A C>T +AACCTTTCATTGAAAG-1_5_92070366_A_G_- AACCTTTCATTGAAAG-1 5 92070366 A G - 1 1 A>G T>C +AAACGAAGTGTTTACG-1_16_57391688_T_G_- AAACGAAGTGTTTACG-1 16 57391688 T G - 1 1 T>G A>C +AAATGGACACGGAAGT-1_12_90123847_T_C_+ AAATGGACACGGAAGT-1 12 90123847 T C + 1 1 T>C T>C +AAAGTCCCACAAATGA-1_2_180085798_G_T_+ AAAGTCCCACAAATGA-1 2 180085798 G T + 1 1 G>T G>T +AAAGTCCCAACAACAA-1_10_29317615_A_C_+ AAAGTCCCAACAACAA-1 10 29317615 A C + 1 1 A>C A>C +AAACCCACACCGTGGT-1_6_60731889_G_A_- AAACCCACACCGTGGT-1 6 60731889 G A - 1 1 G>A C>T +AACAAAGGTCGCTGCA-1_13_45817441_A_C_- AACAAAGGTCGCTGCA-1 13 45817441 A C - 1 1 A>C T>G +AAGAACACAGCACAGA-1_17_39848018_C_T_+ AAGAACACAGCACAGA-1 17 39848018 C T + 1 1 C>T C>T +AACTTCTCACACGTGC-1_9_46013054_A_C_+ AACTTCTCACACGTGC-1 9 46013054 A C + 1 1 A>C A>C +AAGAACAGTTGGAGGT-1_2_180036419_G_A_- AAGAACAGTTGGAGGT-1 2 180036419 G A - 1 1 G>A C>T +AAGATAGCAATAACGA-1_17_39848018_C_T_+ AAGATAGCAATAACGA-1 17 39848018 C T + 2 2 C>T C>T +AACCATGAGTTCCGTA-1_13_44869614_A_G_+ AACCATGAGTTCCGTA-1 13 44869614 A G + 1 1 A>G A>G +AAAGGGCCATGTCTAG-1_2_5379370_T_G_- AAAGGGCCATGTCTAG-1 2 5379370 T G - 1 1 T>G A>C +AACGGGAGTTTGGCTA-1_15_102706962_G_T_- AACGGGAGTTTGGCTA-1 15 102706962 G T - 1 1 G>T C>A +AACCACAAGCTTTGTG-1_16_37509990_G_A_- AACCACAAGCTTTGTG-1 16 37509990 G A - 1 1 G>A C>T +AACAAGATCGGATAAA-1_MT_3332_C_G_+ AACAAGATCGGATAAA-1 MT 3332 C G + 1 1 C>G C>G +AACGTCAAGCGAGGAG-1_14_64811848_C_T_- AACGTCAAGCGAGGAG-1 14 64811848 C T - 1 1 C>T G>A +AAACGCTCAGTAGGAC-1_15_89462253_C_T_+ AAACGCTCAGTAGGAC-1 15 89462253 C T + 1 1 C>T C>T +AAATGGAAGCAGATAT-1_19_5802515_A_G_- AAATGGAAGCAGATAT-1 19 5802515 A G - 1 1 A>G T>C +AAAGGATGTACCATAC-1_14_19417361_T_A_- AAAGGATGTACCATAC-1 14 19417361 T A - 1 1 T>A A>T +AACCACATCAAAGGTA-1_4_48662920_C_T_+ AACCACATCAAAGGTA-1 4 48662920 C T + 1 1 C>T C>T +AACAACCAGTAATACG-1_6_86723507_A_G_- AACAACCAGTAATACG-1 6 86723507 A G - 1 1 A>G T>C +AACGAAACACCGTGGT-1_9_123462100_A_G_+ AACGAAACACCGTGGT-1 9 123462100 A G + 1 1 A>G A>G +AAGAACAGTAAGATAC-1_11_59212508_A_T_- AAGAACAGTAAGATAC-1 11 59212508 A T - 1 1 A>T T>A +AAACCCAAGATTGCGG-1_7_59983420_G_A_- AAACCCAAGATTGCGG-1 7 59983420 G A - 1 1 G>A C>T +AAAGGTAAGACTTCAC-1_8_79393561_C_T_- AAAGGTAAGACTTCAC-1 8 79393561 C T - 1 1 C>T G>A +AACGTCAAGACATATG-1_3_130695980_C_T_- AACGTCAAGACATATG-1 3 130695980 C T - 1 1 C>T G>A +AACCACAAGCTTTGTG-1_5_31622555_C_T_+ AACCACAAGCTTTGTG-1 5 31622555 C T + 1 1 C>T C>T +AACGGGAAGTTGCCCG-1_4_56957301_G_A_- AACGGGAAGTTGCCCG-1 4 56957301 G A - 1 1 G>A C>T +AACAAAGGTTTGACAC-1_16_57391546_C_T_- AACAAAGGTTTGACAC-1 16 57391546 C T - 1 1 C>T G>A +AAAGTGACATGTGTCA-1_11_70652113_G_A_- AAAGTGACATGTGTCA-1 11 70652113 G A - 1 1 G>A C>T +AAGACTCTCGGAGATG-1_12_78848417_C_T_- AAGACTCTCGGAGATG-1 12 78848417 C T - 1 1 C>T G>A +AAAGGATAGTAAACTG-1_4_41190992_C_T_+ AAAGGATAGTAAACTG-1 4 41190992 C T + 1 1 C>T C>T +AAACGCTCAGTAGGAC-1_19_7198530_G_A_- AAACGCTCAGTAGGAC-1 19 7198530 G A - 1 1 G>A C>T +AAGACTCTCGAGCCAC-1_MT_8445_A_G_+ AAGACTCTCGAGCCAC-1 MT 8445 A G + 1 1 A>G A>G +AACAAGACAACAGCTT-1_8_94232103_A_G_+ AACAAGACAACAGCTT-1 8 94232103 A G + 1 1 A>G A>G +AACAACCGTCTCAGAT-1_2_5379332_A_T_- AACAACCGTCTCAGAT-1 2 5379332 A T - 1 1 A>T T>A +AACGAAATCCTGTAAG-1_17_25958488_G_A_- AACGAAATCCTGTAAG-1 17 25958488 G A - 1 1 G>A C>T +AACAACCAGTAATACG-1_1_34225674_A_G_+ AACAACCAGTAATACG-1 1 34225674 A G + 1 1 A>G A>G +AACAAAGGTGTAGTGG-1_16_57391680_C_T_- AACAAAGGTGTAGTGG-1 16 57391680 C T - 2 2 C>T G>A +AAACGCTGTCAACACT-1_MT_3929_C_T_+ AAACGCTGTCAACACT-1 MT 3929 C T + 1 1 C>T C>T +AACACACGTTTGTTCT-1_11_119077780_G_T_- AACACACGTTTGTTCT-1 11 119077780 G T - 1 1 G>T C>A +AAAGGTATCGATTGAC-1_9_3018006_T_G_- AAAGGTATCGATTGAC-1 9 3018006 T G - 1 1 T>G A>C +AAACCCAGTGCTCGTG-1_18_10644570_T_C_- AAACCCAGTGCTCGTG-1 18 10644570 T C - 1 1 T>C A>G +AAAGGATTCTAGGCAT-1_5_146261326_A_G_+ AAAGGATTCTAGGCAT-1 5 146261326 A G + 1 1 A>G A>G +AAATGGACACCCGTAG-1_7_100814043_T_A_+ AAATGGACACCCGTAG-1 7 100814043 T A + 1 1 T>A T>A +AACACACAGTGCTCAT-1_2_75666094_C_T_+ AACACACAGTGCTCAT-1 2 75666094 C T + 1 1 C>T C>T +AACCAACGTGCCTAAT-1_12_99645645_A_G_+ AACCAACGTGCCTAAT-1 12 99645645 A G + 1 1 A>G A>G +AACCATGAGGAAAGGT-1_17_39847744_G_T_- AACCATGAGGAAAGGT-1 17 39847744 G T - 1 1 G>T C>A +AACCACAAGCTTTGTG-1_7_100641145_C_T_+ AACCACAAGCTTTGTG-1 7 100641145 C T + 1 1 C>T C>T +AACTTCTTCTTCACGC-1_14_44614165_C_A_- AACTTCTTCTTCACGC-1 14 44614165 C A - 1 1 C>A G>T +AACGTCAAGCGAGGAG-1_11_55450615_G_A_- AACGTCAAGCGAGGAG-1 11 55450615 G A - 1 1 G>A C>T +AACCCAAGTATCGATC-1_5_4805939_C_T_- AACCCAAGTATCGATC-1 5 4805939 C T - 1 1 C>T G>A +AAACCCACACCGTGGT-1_15_83126087_C_A_- AAACCCACACCGTGGT-1 15 83126087 C A - 1 1 C>A G>T +AACCACAAGCTTTGTG-1_17_33952229_G_A_- AACCACAAGCTTTGTG-1 17 33952229 G A - 1 1 G>A C>T +AAAGGGCCACACTTAG-1_6_31136717_C_A_- AAAGGGCCACACTTAG-1 6 31136717 C A - 1 1 C>A G>T +AACAACCGTTGTAAAG-1_9_37386573_T_A_+ AACAACCGTTGTAAAG-1 9 37386573 T A + 1 1 T>A T>A +AAACGAAGTTGTAAAG-1_13_30814257_G_A_- AAACGAAGTTGTAAAG-1 13 30814257 G A - 1 1 G>A C>T +AACGGGATCAGGAACG-1_3_80705361_G_A_- AACGGGATCAGGAACG-1 3 80705361 G A - 1 1 G>A C>T +AACCAACTCGGAAGGT-1_6_86878696_C_A_+ AACCAACTCGGAAGGT-1 6 86878696 C A + 1 1 C>A C>A +AAACGCTCATCAACCA-1_11_87226998_G_A_- AAACGCTCATCAACCA-1 11 87226998 G A - 1 1 G>A C>T +AACACACAGTGCACAG-1_2_91002763_A_G_+ AACACACAGTGCACAG-1 2 91002763 A G + 1 1 A>G A>G +AACCTTTAGCGTGCTC-1_4_141432788_C_G_- AACCTTTAGCGTGCTC-1 4 141432788 C G - 1 1 C>G G>C +AACCTTTTCAGTCAGT-1_9_3020007_A_G_- AACCTTTTCAGTCAGT-1 9 3020007 A G - 1 1 A>G T>C +AAACCCATCGGATAAA-1_11_51985825_C_G_- AAACCCATCGGATAAA-1 11 51985825 C G - 1 1 C>G G>C +AAGACTCGTCCAGAAG-1_11_66374254_A_G_- AAGACTCGTCCAGAAG-1 11 66374254 A G - 1 1 A>G T>C +AAAGGATTCTAGGCAT-1_2_70743209_G_T_- AAAGGATTCTAGGCAT-1 2 70743209 G T - 1 1 G>T C>A +AACCTGATCTAGTACG-1_17_39848018_C_T_+ AACCTGATCTAGTACG-1 17 39848018 C T + 1 1 C>T C>T +AAACGAAGTGCCCACA-1_16_57391454_T_C_- AAACGAAGTGCCCACA-1 16 57391454 T C - 1 1 T>C A>G +AACAAAGCACGGCACT-1_7_103826696_A_C_- AACAAAGCACGGCACT-1 7 103826696 A C - 1 24 A>C T>G +AACAGGGGTCCGGTCA-1_17_39847403_T_G_- AACAGGGGTCCGGTCA-1 17 39847403 T G - 1 1 T>G A>C +AACAAGAAGATGGTAT-1_9_57062564_C_T_+ AACAAGAAGATGGTAT-1 9 57062564 C T + 1 1 C>T C>T +AACGTCAAGCGAGGAG-1_3_87532096_C_T_+ AACGTCAAGCGAGGAG-1 3 87532096 C T + 1 1 C>T C>T +AACAACCGTAGCCCTG-1_17_39848018_C_T_+ AACAACCGTAGCCCTG-1 17 39848018 C T + 1 1 C>T C>T +AAAGTCCGTGAGTAAT-1_12_87089983_T_A_+ AAAGTCCGTGAGTAAT-1 12 87089983 T A + 1 1 T>A T>A +AACAAAGGTATCGCGC-1_1_157302479_C_T_- AACAAAGGTATCGCGC-1 1 157302479 C T - 1 1 C>T G>A +AAAGAACAGTCGCGAA-1_11_37139309_T_C_- AAAGAACAGTCGCGAA-1 11 37139309 T C - 1 1 T>C A>G +AACGGGATCTGTGCTC-1_17_37003701_G_T_+ AACGGGATCTGTGCTC-1 17 37003701 G T + 1 1 G>T G>T +AACAAAGCACGGCACT-1_13_44768587_T_C_+ AACAAAGCACGGCACT-1 13 44768587 T C + 1 1 T>C T>C +AAACGAAAGGCTTTCA-1_MT_9129_A_G_+ AAACGAAAGGCTTTCA-1 MT 9129 A G + 1 1 A>G A>G +AAAGTGAAGGGCCAAT-1_10_91098018_A_C_+ AAAGTGAAGGGCCAAT-1 10 91098018 A C + 1 1 A>C A>C +AAAGGTATCGATTGAC-1_9_3018020_G_T_- AAAGGTATCGATTGAC-1 9 3018020 G T - 1 1 G>T C>A +AACCAACAGAGGACTC-1_10_83722965_C_G_+ AACCAACAGAGGACTC-1 10 83722965 C G + 1 1 C>G C>G +AAAGGTACACCGTGCA-1_6_62127376_T_C_+ AAAGGTACACCGTGCA-1 6 62127376 T C + 1 1 T>C T>C +AACCACATCAAAGGTA-1_17_45567939_G_A_- AACCACATCAAAGGTA-1 17 45567939 G A - 1 1 G>A C>T +AACCACAAGCTTTGTG-1_1_25067660_G_A_- AACCACAAGCTTTGTG-1 1 25067660 G A - 1 1 G>A C>T +AACCCAAAGCGATCGA-1_10_117865307_C_G_- AACCCAAAGCGATCGA-1 10 117865307 C G - 1 1 C>G G>C +AAACCCACAATCTCTT-1_11_87278986_G_T_- AAACCCACAATCTCTT-1 11 87278986 G T - 1 1 G>T C>A +AACCATGTCCAATCTT-1_10_80403147_A_G_- AACCATGTCCAATCTT-1 10 80403147 A G - 1 1 A>G T>C +AACAACCGTAGCCCTG-1_9_3037748_A_T_- AACAACCGTAGCCCTG-1 9 3037748 A T - 1 1 A>T T>A +AACGAAACATCTCAAG-1_2_103981550_T_C_+ AACGAAACATCTCAAG-1 2 103981550 T C + 1 1 T>C T>C +AAATGGAGTACCGGAA-1_8_54961365_T_C_+ AAATGGAGTACCGGAA-1 8 54961365 T C + 1 1 T>C T>C +AACGTCACATGAATCC-1_13_60934962_G_T_- AACGTCACATGAATCC-1 13 60934962 G T - 1 1 G>T C>A +AACTTCTAGTGATGGC-1_12_79172184_C_T_- AACTTCTAGTGATGGC-1 12 79172184 C T - 1 1 C>T G>A +AAAGGATGTTTCGGCG-1_2_166081541_C_G_- AAAGGATGTTTCGGCG-1 2 166081541 C G - 1 1 C>G G>C +AAAGTCCAGTCTGGTT-1_1_161241235_A_G_- AAAGTCCAGTCTGGTT-1 1 161241235 A G - 1 1 A>G T>C +AACGAAACACCGTGGT-1_7_118972255_C_T_+ AACGAAACACCGTGGT-1 7 118972255 C T + 1 1 C>T C>T +AACCCAAAGAATTGTG-1_7_141430077_G_A_- AACCCAAAGAATTGTG-1 7 141430077 G A - 1 1 G>A C>T +AACCAACTCGGAAGGT-1_7_19696395_G_T_- AACCAACTCGGAAGGT-1 7 19696395 G T - 1 1 G>T C>A +AACACACCAGGCCCTA-1_16_84954663_G_T_- AACACACCAGGCCCTA-1 16 84954663 G T - 1 1 G>T C>A +AACGAAAGTCCAAATC-1_4_40964812_T_C_+ AACGAAAGTCCAAATC-1 4 40964812 T C + 1 1 T>C T>C +AACCTTTAGATCGGTG-1_5_49399472_T_C_- AACCTTTAGATCGGTG-1 5 49399472 T C - 1 1 T>C A>G +AAGACTCGTGGTACAG-1_11_97778293_G_A_- AAGACTCGTGGTACAG-1 11 97778293 G A - 1 1 G>A C>T +AACCAACGTGGTATGG-1_2_174461214_T_A_- AACCAACGTGGTATGG-1 2 174461214 T A - 1 1 T>A A>T +AACGTCAAGCGAGGAG-1_6_38608971_G_T_+ AACGTCAAGCGAGGAG-1 6 38608971 G T + 1 1 G>T G>T +AAAGTCCCACCACATA-1_X_136733179_G_A_- AAAGTCCCACCACATA-1 X 136733179 G A - 1 1 G>A C>T +AAAGTCCAGTCGGCCT-1_3_117319256_C_T_- AAAGTCCAGTCGGCCT-1 3 117319256 C T - 1 1 C>T G>A +AAACGCTGTCAACACT-1_17_31091205_G_A_+ AAACGCTGTCAACACT-1 17 31091205 G A + 1 1 G>A G>A +AAGACAACAGAGAATT-1_17_39847607_T_C_- AAGACAACAGAGAATT-1 17 39847607 T C - 1 1 T>C A>G +AACTTCTAGGAGCAAA-1_16_20341246_A_G_- AACTTCTAGGAGCAAA-1 16 20341246 A G - 1 1 A>G T>C +AACAGGGGTGTTTACG-1_17_39848018_C_T_+ AACAGGGGTGTTTACG-1 17 39848018 C T + 2 2 C>T C>T +AACCTGACACTCTGCT-1_16_57391677_C_G_- AACCTGACACTCTGCT-1 16 57391677 C G - 1 1 C>G G>C +AAGACAAGTCGAATTC-1_12_8749837_C_T_+ AAGACAAGTCGAATTC-1 12 8749837 C T + 1 1 C>T C>T +AACACACTCTGCGGGT-1_5_146261122_A_G_+ AACACACTCTGCGGGT-1 5 146261122 A G + 1 1 A>G A>G +AAATGGATCCCTTGTG-1_5_123071729_T_C_- AAATGGATCCCTTGTG-1 5 123071729 T C - 1 1 T>C A>G +AACAACCCACACACGC-1_X_104492422_T_A_+ AACAACCCACACACGC-1 X 104492422 T A + 1 1 T>A T>A +AAACGCTGTCAACACT-1_14_55739176_G_A_- AAACGCTGTCAACACT-1 14 55739176 G A - 1 1 G>A C>T +AACCACAGTTAGAGTA-1_9_3000613_T_C_- AACCACAGTTAGAGTA-1 9 3000613 T C - 1 1 T>C A>G +AACCAACGTTTCGTGA-1_10_32571540_T_C_- AACCAACGTTTCGTGA-1 10 32571540 T C - 1 1 T>C A>G +AACGAAAAGACCTGGA-1_5_146261122_A_G_+ AACGAAAAGACCTGGA-1 5 146261122 A G + 1 1 A>G A>G +AACGAAAGTTACGTAC-1_14_66987487_T_A_- AACGAAAGTTACGTAC-1 14 66987487 T A - 1 1 T>A A>T +AACAAAGAGGTGCGAT-1_5_112419342_A_G_- AACAAAGAGGTGCGAT-1 5 112419342 A G - 1 1 A>G T>C +AACCCAAGTATCGATC-1_X_106203501_G_A_+ AACCCAAGTATCGATC-1 X 106203501 G A + 1 1 G>A G>A +AAACGCTGTCAACACT-1_17_31091203_C_T_+ AAACGCTGTCAACACT-1 17 31091203 C T + 1 1 C>T C>T +AAATGGAGTACCGGAA-1_9_103208992_C_T_- AAATGGAGTACCGGAA-1 9 103208992 C T - 1 2 C>T G>A +AACCACATCCTAGCTC-1_2_5379245_A_C_- AACCACATCCTAGCTC-1 2 5379245 A C - 1 1 A>C T>G +AACAAGAGTTCTCAGA-1_17_39847426_T_C_+ AACAAGAGTTCTCAGA-1 17 39847426 T C + 1 1 T>C T>C +AAACGCTAGGTTACAA-1_19_46312281_G_A_- AAACGCTAGGTTACAA-1 19 46312281 G A - 1 1 G>A C>T +AACCAACTCGATGGAG-1_16_91563846_T_G_+ AACCAACTCGATGGAG-1 16 91563846 T G + 1 1 T>G T>G +AACCCAAGTCATAACC-1_6_125460447_A_C_- AACCCAAGTCATAACC-1 6 125460447 A C - 1 1 A>C T>G +AACAACCAGTTACTCG-1_10_70558367_C_T_- AACAACCAGTTACTCG-1 10 70558367 C T - 1 1 C>T G>A +AAAGTCCAGTCGGCCT-1_8_70758571_C_T_+ AAAGTCCAGTCGGCCT-1 8 70758571 C T + 1 1 C>T C>T +AACCAACTCGATGGAG-1_3_31163279_C_A_+ AACCAACTCGATGGAG-1 3 31163279 C A + 1 1 C>A C>A +AACAACCAGACGACTG-1_9_70554648_T_C_+ AACAACCAGACGACTG-1 9 70554648 T C + 1 1 T>C T>C +AACCAACTCGGAAGGT-1_1_104778374_G_A_+ AACCAACTCGGAAGGT-1 1 104778374 G A + 1 1 G>A G>A +AACCACATCCTAGCTC-1_16_84954718_C_T_- AACCACATCCTAGCTC-1 16 84954718 C T - 1 1 C>T G>A +AAACGCTAGTAGCATA-1_6_110810724_C_T_+ AAACGCTAGTAGCATA-1 6 110810724 C T + 1 1 C>T C>T +AACCAACCAGTCTTCC-1_9_3028868_T_A_- AACCAACCAGTCTTCC-1 9 3028868 T A - 1 1 T>A A>T +AAACGCTTCAGCAGAG-1_19_5802157_T_C_- AAACGCTTCAGCAGAG-1 19 5802157 T C - 1 3 T>C A>G +AAATGGAGTAGCGCCT-1_2_98666644_C_G_- AAATGGAGTAGCGCCT-1 2 98666644 C G - 1 1 C>G G>C +AACCCAAAGAATTGTG-1_6_125144331_C_T_+ AACCCAAAGAATTGTG-1 6 125144331 C T + 1 1 C>T C>T +AACTTCTCAGGACTTT-1_3_153687410_C_A_- AACTTCTCAGGACTTT-1 3 153687410 C A - 1 1 C>A G>T +AACCAACCAGTCTTCC-1_9_3028856_G_C_- AACCAACCAGTCTTCC-1 9 3028856 G C - 1 1 G>C C>G +AAGACAATCGCAGTCG-1_8_4295999_C_T_- AAGACAATCGCAGTCG-1 8 4295999 C T - 1 1 C>T G>A +AACGAAACAACTACGT-1_6_113745842_G_A_- AACGAAACAACTACGT-1 6 113745842 G A - 1 1 G>A C>T +AACAACCGTATGTCTG-1_14_123276806_T_C_- AACAACCGTATGTCTG-1 14 123276806 T C - 1 1 T>C A>G +AAATGGATCTGCGGCA-1_7_89345257_A_G_- AAATGGATCTGCGGCA-1 7 89345257 A G - 1 1 A>G T>C +AAGAACAGTCGTTGCG-1_11_85465678_A_T_+ AAGAACAGTCGTTGCG-1 11 85465678 A T + 1 1 A>T A>T +AACACACGTGGATCAG-1_17_39847458_A_G_- AACACACGTGGATCAG-1 17 39847458 A G - 1 1 A>G T>C +AACCACAAGCTTTGTG-1_10_62946357_C_T_+ AACCACAAGCTTTGTG-1 10 62946357 C T + 1 1 C>T C>T +AAAGTGATCTCGGCTT-1_7_109138861_A_G_- AAAGTGATCTCGGCTT-1 7 109138861 A G - 1 1 A>G T>C +AAATGGAGTACCGGAA-1_8_124837063_T_C_- AAATGGAGTACCGGAA-1 8 124837063 T C - 1 1 T>C A>G +AAGACTCGTGGTACAG-1_17_24721062_T_C_+ AAGACTCGTGGTACAG-1 17 24721062 T C + 1 1 T>C T>C +AACAACCAGTAATACG-1_13_110400690_T_G_+ AACAACCAGTAATACG-1 13 110400690 T G + 1 1 T>G T>G +AAACCCAAGATTGCGG-1_7_16923852_A_G_- AAACCCAAGATTGCGG-1 7 16923852 A G - 1 1 A>G T>C +AACCTTTCAGACCTGC-1_8_32476824_G_A_- AACCTTTCAGACCTGC-1 8 32476824 G A - 1 1 G>A C>T +AAAGGATGTACCATAC-1_14_19417330_G_A_- AAAGGATGTACCATAC-1 14 19417330 G A - 1 1 G>A C>T +AACCTGATCGGATACT-1_2_5379332_A_T_- AACCTGATCGGATACT-1 2 5379332 A T - 1 1 A>T T>A +AACCAACTCGATGGAG-1_7_130895423_A_T_- AACCAACTCGATGGAG-1 7 130895423 A T - 1 1 A>T T>A +AACAACCGTATGTCTG-1_14_18811887_C_A_- AACAACCGTATGTCTG-1 14 18811887 C A - 1 1 C>A G>T +AACGGGAGTAAGGCCA-1_9_3035192_T_C_- AACGGGAGTAAGGCCA-1 9 3035192 T C - 1 1 T>C A>G +AAGAACATCATAGGCT-1_7_99839123_G_A_- AAGAACATCATAGGCT-1 7 99839123 G A - 1 1 G>A C>T +AAATGGACAACAACAA-1_17_39847607_T_C_+ AAATGGACAACAACAA-1 17 39847607 T C + 1 1 T>C T>C +AAACCCAGTTTCGTAG-1_17_39847458_A_G_+ AAACCCAGTTTCGTAG-1 17 39847458 A G + 1 1 A>G A>G +AAACGAATCTGGGCGT-1_12_44600513_C_T_+ AAACGAATCTGGGCGT-1 12 44600513 C T + 1 1 C>T C>T +AAGACTCCAACACAGG-1_X_37084045_T_C_- AAGACTCCAACACAGG-1 X 37084045 T C - 1 1 T>C A>G +AACTTCTAGTGATGGC-1_1_68907593_T_A_- AACTTCTAGTGATGGC-1 1 68907593 T A - 1 1 T>A A>T +AAAGAACCAGCAAGAC-1_9_3014311_G_A_- AAAGAACCAGCAAGAC-1 9 3014311 G A - 1 1 G>A C>T +AACACACAGGATCACG-1_1_137939430_A_T_- AACACACAGGATCACG-1 1 137939430 A T - 1 1 A>T T>A +AAACGCTTCTGCTTAT-1_9_3014275_C_T_- AAACGCTTCTGCTTAT-1 9 3014275 C T - 1 1 C>T G>A +AAGATAGAGGTTGAGC-1_19_10451481_C_T_+ AAGATAGAGGTTGAGC-1 19 10451481 C T + 1 1 C>T C>T +AAACCCATCTTAAGGC-1_5_146261076_T_C_+ AAACCCATCTTAAGGC-1 5 146261076 T C + 1 1 T>C T>C +AAATGGAAGTTTCGGT-1_16_42181393_C_T_+ AAATGGAAGTTTCGGT-1 16 42181393 C T + 1 1 C>T C>T +AACTTCTAGAACAGGA-1_7_4134748_C_A_+ AACTTCTAGAACAGGA-1 7 4134748 C A + 1 1 C>A C>A +AACAAGACATCCGTTC-1_X_56589701_G_T_- AACAAGACATCCGTTC-1 X 56589701 G T - 1 1 G>T C>A +AACGTCAGTAGTCTGT-1_17_39847403_T_G_- AACGTCAGTAGTCTGT-1 17 39847403 T G - 1 1 T>G A>C +AAGACTCGTCCACATA-1_1_87924162_C_T_+ AAGACTCGTCCACATA-1 1 87924162 C T + 1 1 C>T C>T +AACCTGACATGAGATA-1_10_106932319_C_T_+ AACCTGACATGAGATA-1 10 106932319 C T + 1 1 C>T C>T +AAATGGAAGTTCAACC-1_5_65588921_T_C_- AAATGGAAGTTCAACC-1 5 65588921 T C - 1 1 T>C A>G +AACACACCATAACGGG-1_5_33736977_C_T_+ AACACACCATAACGGG-1 5 33736977 C T + 1 1 C>T C>T +AACTTCTTCTTCACGC-1_2_90890338_G_A_+ AACTTCTTCTTCACGC-1 2 90890338 G A + 1 1 G>A G>A +AACCTTTAGGGTATAT-1_3_157037329_C_G_+ AACCTTTAGGGTATAT-1 3 157037329 C G + 1 1 C>G C>G +AAACGAAAGTCGCGAA-1_8_83941884_C_A_+ AAACGAAAGTCGCGAA-1 8 83941884 C A + 1 1 C>A C>A +AAGAACAGTAAGATAC-1_X_101322627_G_T_+ AAGAACAGTAAGATAC-1 X 101322627 G T + 1 1 G>T G>T +AAACGCTTCAAAGGAT-1_17_39847607_T_C_+ AAACGCTTCAAAGGAT-1 17 39847607 T C + 1 1 T>C T>C +AAGACTCGTGGTACAG-1_5_122175266_T_C_+ AAGACTCGTGGTACAG-1 5 122175266 T C + 1 1 T>C T>C +AACGAAAAGCTAAACA-1_2_174462569_G_A_- AACGAAAAGCTAAACA-1 2 174462569 G A - 1 1 G>A C>T +AACCAACGTAACAGGC-1_8_95714772_C_T_+ AACCAACGTAACAGGC-1 8 95714772 C T + 1 1 C>T C>T +AACGAAACAACTACGT-1_9_30465416_C_A_+ AACGAAACAACTACGT-1 9 30465416 C A + 1 1 C>A C>A +AAAGAACAGTAACAGT-1_2_180038168_C_T_- AAAGAACAGTAACAGT-1 2 180038168 C T - 1 1 C>T G>A +AAAGGTATCTTCCCAG-1_9_123461940_T_G_+ AAAGGTATCTTCCCAG-1 9 123461940 T G + 1 1 T>G T>G +AACCTGATCGTGCTCT-1_7_88115224_C_A_+ AACCTGATCGTGCTCT-1 7 88115224 C A + 1 1 C>A C>A +AACAGGGCAGATTTCG-1_9_123461940_T_G_+ AACAGGGCAGATTTCG-1 9 123461940 T G + 1 1 T>G T>G +AAAGGATAGTAAACTG-1_11_90278499_C_T_+ AAAGGATAGTAAACTG-1 11 90278499 C T + 1 1 C>T C>T +AACCTGACAATAGTAG-1_10_60666633_A_T_- AACCTGACAATAGTAG-1 10 60666633 A T - 1 1 A>T T>A +AAATGGAAGTTCAACC-1_2_5379332_A_T_- AAATGGAAGTTCAACC-1 2 5379332 A T - 1 1 A>T T>A +AACCATGAGGTGCATG-1_1_139101363_C_T_+ AACCATGAGGTGCATG-1 1 139101363 C T + 1 1 C>T C>T +AAAGGGCCAGCGCTTG-1_4_155573109_G_T_+ AAAGGGCCAGCGCTTG-1 4 155573109 G T + 1 1 G>T G>T +AAACGAAGTGTAACGG-1_16_67488030_T_C_- AAACGAAGTGTAACGG-1 16 67488030 T C - 1 1 T>C A>G +AAATGGAGTACCGGAA-1_8_94179863_C_T_+ AAATGGAGTACCGGAA-1 8 94179863 C T + 1 1 C>T C>T +AAGACTCGTCCAGAAG-1_5_122788320_G_T_- AAGACTCGTCCAGAAG-1 5 122788320 G T - 1 1 G>T C>A +AAAGGTAGTGACGTCC-1_X_136995952_A_G_+ AAAGGTAGTGACGTCC-1 X 136995952 A G + 1 1 A>G A>G +AAACGCTCAGTAGGAC-1_1_30941736_G_A_- AAACGCTCAGTAGGAC-1 1 30941736 G A - 1 1 G>A C>T +AACGGGAAGTTGCCCG-1_7_3330872_C_T_+ AACGGGAAGTTGCCCG-1 7 3330872 C T + 1 1 C>T C>T +AAGATAGAGGAATCGC-1_18_74770586_A_G_+ AAGATAGAGGAATCGC-1 18 74770586 A G + 1 1 A>G A>G +AACCTTTAGGGTATAT-1_4_87133931_T_A_- AACCTTTAGGGTATAT-1 4 87133931 T A - 1 1 T>A A>T +AAAGTGACAAATGGCG-1_10_69703381_G_T_+ AAAGTGACAAATGGCG-1 10 69703381 G T + 1 1 G>T G>T +AACGAAATCCTGTAAG-1_12_72212055_G_A_- AACGAAATCCTGTAAG-1 12 72212055 G A - 1 1 G>A C>T +AAATGGACAACTTGGT-1_12_78350929_T_C_+ AAATGGACAACTTGGT-1 12 78350929 T C + 1 1 T>C T>C +AAACGAAAGTCGCGAA-1_5_52860721_C_A_+ AAACGAAAGTCGCGAA-1 5 52860721 C A + 1 1 C>A C>A +AACCCAAAGGTATAGT-1_7_140863918_G_A_- AACCCAAAGGTATAGT-1 7 140863918 G A - 1 1 G>A C>T +AACCACAAGCTTTGTG-1_2_150832597_A_G_- AACCACAAGCTTTGTG-1 2 150832597 A G - 1 1 A>G T>C +AAACGCTGTCAACACT-1_17_56717835_T_C_+ AAACGCTGTCAACACT-1 17 56717835 T C + 1 1 T>C T>C +AACGAAACACGCTGCA-1_17_87433632_G_A_- AACGAAACACGCTGCA-1 17 87433632 G A - 1 1 G>A C>T +AACAACCAGCCTGGAA-1_5_117378362_C_T_+ AACAACCAGCCTGGAA-1 5 117378362 C T + 1 1 C>T C>T +AACCTGACAGCAGTGA-1_3_152971007_G_A_- AACCTGACAGCAGTGA-1 3 152971007 G A - 1 1 G>A C>T +AAAGGATAGATGAAGG-1_18_77782318_C_T_+ AAAGGATAGATGAAGG-1 18 77782318 C T + 1 1 C>T C>T +AACACACGTGTTGCCG-1_8_22637006_C_G_- AACACACGTGTTGCCG-1 8 22637006 C G - 1 1 C>G G>C +AACCTGAGTTCTCCCA-1_11_42131784_G_A_- AACCTGAGTTCTCCCA-1 11 42131784 G A - 1 1 G>A C>T +AACCTGACATCGTCCT-1_10_77988195_G_A_- AACCTGACATCGTCCT-1 10 77988195 G A - 1 1 G>A C>T +AAAGGATTCGTAACAC-1_17_39848018_C_T_+ AAAGGATTCGTAACAC-1 17 39848018 C T + 1 1 C>T C>T +AACGGGATCAGGAACG-1_5_143505600_G_A_- AACGGGATCAGGAACG-1 5 143505600 G A - 1 1 G>A C>T +AAAGGATAGTTCCGGC-1_9_3000596_G_A_- AAAGGATAGTTCCGGC-1 9 3000596 G A - 1 1 G>A C>T +AACGTCACATAGATGA-1_5_149616987_G_A_- AACGTCACATAGATGA-1 5 149616987 G A - 1 1 G>A C>T +AACCTGAAGGTAAGTT-1_17_39848018_C_T_+ AACCTGAAGGTAAGTT-1 17 39848018 C T + 1 1 C>T C>T +AACAACCCAGCACAGA-1_12_110691196_G_A_- AACAACCCAGCACAGA-1 12 110691196 G A - 1 1 G>A C>T +AACCTTTGTCTCAGGC-1_11_48805607_G_C_+ AACCTTTGTCTCAGGC-1 11 48805607 G C + 1 1 G>C G>C +AACGAAATCCTGTAAG-1_14_54361670_A_G_+ AACGAAATCCTGTAAG-1 14 54361670 A G + 1 1 A>G A>G +AAACGCTAGGTTACAA-1_10_78270029_G_A_- AAACGCTAGGTTACAA-1 10 78270029 G A - 1 1 G>A C>T +AACCATGGTGAGTTTC-1_13_66900690_G_A_- AACCATGGTGAGTTTC-1 13 66900690 G A - 1 1 G>A C>T +AAAGGGCAGGACATCG-1_10_94563906_C_G_+ AAAGGGCAGGACATCG-1 10 94563906 C G + 1 1 C>G C>G +AAGACTCAGAAGCTCG-1_7_100728703_C_T_+ AAGACTCAGAAGCTCG-1 7 100728703 C T + 1 1 C>T C>T +AAAGTCCGTACGTACT-1_1_68878408_A_C_- AAAGTCCGTACGTACT-1 1 68878408 A C - 1 1 A>C T>G +AACCACATCCTAGCTC-1_12_109571384_C_G_- AACCACATCCTAGCTC-1 12 109571384 C G - 1 1 C>G G>C +AACGGGAGTTGTGCCG-1_12_108003498_T_C_- AACGGGAGTTGTGCCG-1 12 108003498 T C - 1 1 T>C A>G +AAACGCTAGGTTACAA-1_7_126795381_C_T_- AAACGCTAGGTTACAA-1 7 126795381 C T - 1 1 C>T G>A +AACGTCAAGCGAGGAG-1_10_80404172_G_A_- AACGTCAAGCGAGGAG-1 10 80404172 G A - 1 1 G>A C>T +AAAGAACAGCCTGAAG-1_3_136937500_T_A_+ AAAGAACAGCCTGAAG-1 3 136937500 T A + 1 1 T>A T>A +AAACCCAGTTTCGTTT-1_17_39847426_T_C_+ AAACCCAGTTTCGTTT-1 17 39847426 T C + 1 1 T>C T>C +AAGACAAAGGATACCG-1_9_121710398_G_T_+ AAGACAAAGGATACCG-1 9 121710398 G T + 1 1 G>T G>T +AACCTGATCTTCGTGC-1_18_36628106_C_T_+ AACCTGATCTTCGTGC-1 18 36628106 C T + 1 1 C>T C>T +AACCTTTCAGACCTGC-1_12_82446859_G_A_+ AACCTTTCAGACCTGC-1 12 82446859 G A + 1 1 G>A G>A +AACAAAGCAATCAGCT-1_5_122675150_A_G_+ AACAAAGCAATCAGCT-1 5 122675150 A G + 1 1 A>G A>G +AACCTGAGTCCAGTTA-1_17_70974281_G_A_- AACCTGAGTCCAGTTA-1 17 70974281 G A - 1 1 G>A C>T +AAAGGTAGTATGTGTC-1_19_5802177_C_T_- AAAGGTAGTATGTGTC-1 19 5802177 C T - 1 1 C>T G>A +AAACGAACACGACGAA-1_8_121903959_A_T_+ AAACGAACACGACGAA-1 8 121903959 A T + 1 1 A>T A>T +AACACACGTGGATCAG-1_3_95234608_G_C_+ AACACACGTGGATCAG-1 3 95234608 G C + 1 1 G>C G>C +AACAGGGTCTTCCACG-1_19_7276862_C_G_- AACAGGGTCTTCCACG-1 19 7276862 C G - 1 1 C>G G>C +AAATGGATCTCCACTG-1_2_154888214_C_T_- AAATGGATCTCCACTG-1 2 154888214 C T - 1 1 C>T G>A +AACTTCTTCTTCACGC-1_3_146983752_C_T_+ AACTTCTTCTTCACGC-1 3 146983752 C T + 1 1 C>T C>T +AAAGAACAGTCGCGAA-1_2_98666905_C_A_- AAAGAACAGTCGCGAA-1 2 98666905 C A - 1 1 C>A G>T +AACACACCATCGTCCT-1_6_124740973_G_A_- AACACACCATCGTCCT-1 6 124740973 G A - 1 1 G>A C>T +AAGAACACAGCACAGA-1_12_69322198_T_C_- AAGAACACAGCACAGA-1 12 69322198 T C - 1 1 T>C A>G +AAACGCTAGGTAGGCT-1_17_87433589_G_A_- AAACGCTAGGTAGGCT-1 17 87433589 G A - 1 1 G>A C>T +AAAGTCCCACAGTATC-1_X_95857002_C_A_+ AAAGTCCCACAGTATC-1 X 95857002 C A + 1 1 C>A C>A +AACGGGACATATGCGT-1_X_136733020_G_A_- AACGGGACATATGCGT-1 X 136733020 G A - 1 1 G>A C>T +AACGTCAAGCGAGGAG-1_11_55454895_A_T_- AACGTCAAGCGAGGAG-1 11 55454895 A T - 1 1 A>T T>A +AAAGTCCGTACGTACT-1_9_59300034_T_A_+ AAAGTCCGTACGTACT-1 9 59300034 T A + 1 1 T>A T>A +AACTTCTCAGCGGATA-1_17_71229331_A_T_+ AACTTCTCAGCGGATA-1 17 71229331 A T + 1 1 A>T A>T +AAACCCACAGCTGTGC-1_17_39848018_C_T_+ AAACCCACAGCTGTGC-1 17 39848018 C T + 1 1 C>T C>T +AAAGGATTCTAGGCAT-1_X_94535562_T_C_- AAAGGATTCTAGGCAT-1 X 94535562 T C - 1 1 T>C A>G +AAAGGGCAGTAAGCAT-1_X_150524822_T_C_- AAAGGGCAGTAAGCAT-1 X 150524822 T C - 1 1 T>C A>G +AAACCCACAATTGCGT-1_2_170360599_A_T_- AAACCCACAATTGCGT-1 2 170360599 A T - 1 1 A>T T>A +AACTTCTCACTAACGT-1_14_76504622_T_G_+ AACTTCTCACTAACGT-1 14 76504622 T G + 1 1 T>G T>G +AAAGGGCGTACCGTCG-1_4_124731385_A_G_+ AAAGGGCGTACCGTCG-1 4 124731385 A G + 1 1 A>G A>G +AAAGTGAGTAGGTACG-1_13_100820732_A_G_- AAAGTGAGTAGGTACG-1 13 100820732 A G - 1 1 A>G T>C +AACCTTTAGGAGAGTA-1_2_174346455_A_G_+ AACCTTTAGGAGAGTA-1 2 174346455 A G + 1 1 A>G A>G +AACGTCACACTCCTTG-1_4_149646912_G_T_+ AACGTCACACTCCTTG-1 4 149646912 G T + 1 1 G>T G>T +AACAACCCACACACGC-1_2_94425176_C_T_- AACAACCCACACACGC-1 2 94425176 C T - 1 1 C>T G>A +AACGGGAAGTTACTCG-1_10_28495317_A_G_+ AACGGGAAGTTACTCG-1 10 28495317 A G + 1 1 A>G A>G +AACACACAGTGCACAG-1_9_107614329_G_T_- AACACACAGTGCACAG-1 9 107614329 G T - 1 1 G>T C>A +AACAACCAGCCTCTGG-1_6_124917786_G_A_- AACAACCAGCCTCTGG-1 6 124917786 G A - 1 1 G>A C>T +AACACACAGTGCACAG-1_10_23164786_C_T_- AACACACAGTGCACAG-1 10 23164786 C T - 1 1 C>T G>A +AAACCCAAGATTGCGG-1_1_164438430_T_C_- AAACCCAAGATTGCGG-1 1 164438430 T C - 1 1 T>C A>G +AACAAGAGTAGAATGT-1_3_89074069_G_A_+ AACAAGAGTAGAATGT-1 3 89074069 G A + 1 1 G>A G>A +AACCACAGTCTACAAC-1_14_20734981_G_A_- AACCACAGTCTACAAC-1 14 20734981 G A - 1 1 G>A C>T +AACTTCTAGCAGATAT-1_5_49320768_T_G_- AACTTCTAGCAGATAT-1 5 49320768 T G - 1 1 T>G A>C +AACCTTTCATTGAAAG-1_18_34251811_T_A_+ AACCTTTCATTGAAAG-1 18 34251811 T A + 1 1 T>A T>A +AAATGGACATAATCCG-1_17_71455676_C_T_- AAATGGACATAATCCG-1 17 71455676 C T - 1 1 C>T G>A +AAACCCAAGATTGCGG-1_7_44463331_C_A_+ AAACCCAAGATTGCGG-1 7 44463331 C A + 1 1 C>A C>A +AAAGTCCCACGCTTAA-1_9_110102605_T_C_- AAAGTCCCACGCTTAA-1 9 110102605 T C - 1 1 T>C A>G +AACCACATCTTACACT-1_4_154157536_A_G_- AACCACATCTTACACT-1 4 154157536 A G - 1 1 A>G T>C +AACGTCACATGAATCC-1_17_39848100_A_T_+ AACGTCACATGAATCC-1 17 39848100 A T + 1 1 A>T A>T +AACAACCAGACGACTG-1_9_70554626_A_G_+ AACAACCAGACGACTG-1 9 70554626 A G + 1 1 A>G A>G +AACCAACAGCTAAATG-1_17_39847173_T_C_+ AACCAACAGCTAAATG-1 17 39847173 T C + 1 1 T>C T>C +AACCCAAAGTCATCCA-1_11_105928990_C_T_+ AACCCAAAGTCATCCA-1 11 105928990 C T + 1 1 C>T C>T +AACCAACCAGTCTTCC-1_9_3028788_C_G_- AACCAACCAGTCTTCC-1 9 3028788 C G - 1 1 C>G G>C +AACAACCAGTTACTCG-1_15_75045203_G_A_- AACAACCAGTTACTCG-1 15 75045203 G A - 1 2 G>A C>T +AACTTCTAGACGCAGT-1_10_122081391_G_A_- AACTTCTAGACGCAGT-1 10 122081391 G A - 1 1 G>A C>T +AACTTCTCAGAAACCG-1_16_94402850_C_T_+ AACTTCTCAGAAACCG-1 16 94402850 C T + 1 1 C>T C>T +AACAAGAAGTAAACTG-1_2_125674662_C_T_+ AACAAGAAGTAAACTG-1 2 125674662 C T + 1 1 C>T C>T +AACCCAAGTATCGATC-1_18_75136098_T_C_+ AACCCAAGTATCGATC-1 18 75136098 T C + 1 1 T>C T>C +AACGGGAAGTTGCCCG-1_6_86980279_T_A_+ AACGGGAAGTTGCCCG-1 6 86980279 T A + 1 1 T>A T>A +AACCACAAGACTTGTC-1_17_24721211_T_C_+ AACCACAAGACTTGTC-1 17 24721211 T C + 1 1 T>C T>C +AAGATAGGTCATCAGT-1_3_136936798_C_T_+ AAGATAGGTCATCAGT-1 3 136936798 C T + 1 1 C>T C>T +AAGACAACATGACAAA-1_18_59076907_A_G_+ AAGACAACATGACAAA-1 18 59076907 A G + 1 1 A>G A>G +AAGACAAGTACTGACT-1_15_79786550_G_C_- AAGACAAGTACTGACT-1 15 79786550 G C - 1 1 G>C C>G +AACGGGAAGTTGCCCG-1_MT_9139_C_T_+ AACGGGAAGTTGCCCG-1 MT 9139 C T + 1 3 C>T C>T +AACCTGAAGGTCATTC-1_8_85260571_G_A_- AACCTGAAGGTCATTC-1 8 85260571 G A - 1 1 G>A C>T +AACGGGAAGTTGCCCG-1_4_56957268_G_A_- AACGGGAAGTTGCCCG-1 4 56957268 G A - 1 1 G>A C>T +AACAACCAGACGACTG-1_7_122369193_A_T_+ AACAACCAGACGACTG-1 7 122369193 A T + 1 1 A>T A>T +AAAGGTATCGATTGAC-1_12_116207477_A_C_- AAAGGTATCGATTGAC-1 12 116207477 A C - 1 1 A>C T>G +AAAGGTATCGATTGAC-1_17_39848018_C_T_+ AAAGGTATCGATTGAC-1 17 39848018 C T + 2 2 C>T C>T +AACCAACGTTCTAAGC-1_4_32775113_A_G_+ AACCAACGTTCTAAGC-1 4 32775113 A G + 1 1 A>G A>G +AACTTCTCAGGACTTT-1_X_123145393_G_A_+ AACTTCTCAGGACTTT-1 X 123145393 G A + 1 1 G>A G>A +AAAGAACCAACTTCTT-1_2_144142635_G_A_- AAAGAACCAACTTCTT-1 2 144142635 G A - 1 1 G>A C>T +AAGATAGCAATAACGA-1_9_61913402_A_G_- AAGATAGCAATAACGA-1 9 61913402 A G - 1 1 A>G T>C +AAAGGATGTAAGATTG-1_2_105675578_G_T_+ AAAGGATGTAAGATTG-1 2 105675578 G T + 1 1 G>T G>T +AAATGGACACCCGTAG-1_7_100814050_C_T_+ AAATGGACACCCGTAG-1 7 100814050 C T + 1 1 C>T C>T +AACGGGAAGTTGCCCG-1_19_5800795_G_A_- AACGGGAAGTTGCCCG-1 19 5800795 G A - 1 1 G>A C>T +AACCTGACATCGTCCT-1_7_15917383_C_T_- AACCTGACATCGTCCT-1 7 15917383 C T - 1 1 C>T G>A +AACCCAAAGCAAATGT-1_4_33948829_T_A_+ AACCCAAAGCAAATGT-1 4 33948829 T A + 1 1 T>A T>A +AAGACAACACCGCTGA-1_17_89099979_G_A_- AAGACAACACCGCTGA-1 17 89099979 G A - 1 1 G>A C>T +AAACCCACATCTGGGC-1_10_23785622_T_C_- AAACCCACATCTGGGC-1 10 23785622 T C - 1 1 T>C A>G +AAGACTCGTCAAGTTC-1_10_128626223_G_A_- AAGACTCGTCAAGTTC-1 10 128626223 G A - 1 1 G>A C>T +AAGAACAGTTCGGTTA-1_12_21390975_A_G_- AAGAACAGTTCGGTTA-1 12 21390975 A G - 1 1 A>G T>C +AACCTTTAGGGTATAT-1_9_3020463_A_C_- AACCTTTAGGGTATAT-1 9 3020463 A C - 1 1 A>C T>G +AAAGGATAGGTGAGCT-1_16_57391454_T_C_- AAAGGATAGGTGAGCT-1 16 57391454 T C - 1 1 T>C A>G +AAGACTCGTGGTACAG-1_9_78478603_G_A_- AAGACTCGTGGTACAG-1 9 78478603 G A - 1 1 G>A C>T +AACCTGAAGTCCCAGC-1_4_47383778_A_C_+ AACCTGAAGTCCCAGC-1 4 47383778 A C + 1 1 A>C A>C +AACTTCTAGATACGAT-1_11_100781786_A_T_- AACTTCTAGATACGAT-1 11 100781786 A T - 1 1 A>T T>A +AACCTTTTCCTCGCAT-1_10_81321957_T_C_+ AACCTTTTCCTCGCAT-1 10 81321957 T C + 1 1 T>C T>C +AACAAAGTCCCGTTGT-1_18_6454824_C_T_- AACAAAGTCCCGTTGT-1 18 6454824 C T - 1 1 C>T G>A +AACCACAAGCTTTGTG-1_2_144667888_T_C_+ AACCACAAGCTTTGTG-1 2 144667888 T C + 1 1 T>C T>C +AAGAACATCTCCGAAA-1_19_5802190_T_A_- AAGAACATCTCCGAAA-1 19 5802190 T A - 1 4 T>A A>T +AAAGTCCAGTCGGCCT-1_4_138457970_C_T_+ AAAGTCCAGTCGGCCT-1 4 138457970 C T + 1 1 C>T C>T +AACCTGATCTTCGTGC-1_1_63179283_G_A_+ AACCTGATCTTCGTGC-1 1 63179283 G A + 1 1 G>A G>A +AACCCAATCCCTCATG-1_2_42189631_T_C_- AACCCAATCCCTCATG-1 2 42189631 T C - 1 1 T>C A>G +AACTTCTAGTGATGGC-1_11_49886091_A_T_+ AACTTCTAGTGATGGC-1 11 49886091 A T + 1 1 A>T A>T +AAACCCACACCGTGGT-1_7_30435012_G_A_- AAACCCACACCGTGGT-1 7 30435012 G A - 1 1 G>A C>T +AACTTCTAGTGATGGC-1_7_57229357_T_C_- AACTTCTAGTGATGGC-1 7 57229357 T C - 1 1 T>C A>G +AACGGGATCAGGAACG-1_14_38468630_T_C_- AACGGGATCAGGAACG-1 14 38468630 T C - 1 1 T>C A>G +AACAACCCAGGAACCA-1_19_5802657_G_A_- AACAACCCAGGAACCA-1 19 5802657 G A - 1 1 G>A C>T +AAATGGAAGTAGAATC-1_12_73946696_C_A_+ AAATGGAAGTAGAATC-1 12 73946696 C A + 1 1 C>A C>A +AAATGGAGTGGTCAAG-1_17_39847073_G_T_+ AAATGGAGTGGTCAAG-1 17 39847073 G T + 1 1 G>T G>T +AACTTCTCACTAACGT-1_16_74048786_A_G_- AACTTCTCACTAACGT-1 16 74048786 A G - 1 1 A>G T>C +AACCACAAGCCTTTCC-1_7_143241057_T_G_- AACCACAAGCCTTTCC-1 7 143241057 T G - 1 1 T>G A>C +AACGGGATCCGCAACG-1_9_37544538_G_A_- AACGGGATCCGCAACG-1 9 37544538 G A - 1 1 G>A C>T +AACCATGGTCTACAAC-1_9_70554625_T_G_+ AACCATGGTCTACAAC-1 9 70554625 T G + 1 1 T>G T>G +AAAGGGCTCTGCTAGA-1_5_115345844_T_C_- AAAGGGCTCTGCTAGA-1 5 115345844 T C - 1 1 T>C A>G +AAACGCTCAGTAGGAC-1_4_8607539_C_T_+ AAACGCTCAGTAGGAC-1 4 8607539 C T + 1 1 C>T C>T +AACGTCAAGCGAGGAG-1_4_130781374_T_A_+ AACGTCAAGCGAGGAG-1 4 130781374 T A + 1 1 T>A T>A +AACGTCAAGAGAAGGT-1_14_19278148_A_G_+ AACGTCAAGAGAAGGT-1 14 19278148 A G + 1 1 A>G A>G +AAAGTGAGTAGGTACG-1_3_104008721_G_A_+ AAAGTGAGTAGGTACG-1 3 104008721 G A + 1 1 G>A G>A +AACCTGACAGCAGTGA-1_3_152971057_G_A_- AACCTGACAGCAGTGA-1 3 152971057 G A - 1 1 G>A C>T +AAAGAACGTTGACTGT-1_17_42375697_C_T_+ AAAGAACGTTGACTGT-1 17 42375697 C T + 1 1 C>T C>T +AAGAACATCATAGGCT-1_11_57329986_C_T_+ AAGAACATCATAGGCT-1 11 57329986 C T + 1 1 C>T C>T +AACAACCCACACACGC-1_16_81414956_T_C_+ AACAACCCACACACGC-1 16 81414956 T C + 1 1 T>C T>C +AACCATGTCCTCTCGA-1_17_39847458_A_G_+ AACCATGTCCTCTCGA-1 17 39847458 A G + 1 1 A>G A>G +AAACGAAGTGTTTACG-1_11_99385259_A_T_- AAACGAAGTGTTTACG-1 11 99385259 A T - 1 1 A>T T>A +AAATGGAGTAGTGTGG-1_1_53935317_C_T_- AAATGGAGTAGTGTGG-1 1 53935317 C T - 1 1 C>T G>A +AAACGAAAGGGAGGTG-1_8_72523284_C_A_- AAACGAAAGGGAGGTG-1 8 72523284 C A - 1 1 C>A G>T +AAAGTCCAGTCGGCCT-1_3_117319241_C_T_- AAAGTCCAGTCGGCCT-1 3 117319241 C T - 1 1 C>T G>A +AACCCAACATGGACAG-1_18_34345016_G_A_- AACCCAACATGGACAG-1 18 34345016 G A - 1 1 G>A C>T +AAACGCTGTTTGACAC-1_17_39847281_A_T_- AAACGCTGTTTGACAC-1 17 39847281 A T - 1 1 A>T T>A +AAGACAAGTACTGACT-1_16_49911491_C_T_+ AAGACAAGTACTGACT-1 16 49911491 C T + 1 1 C>T C>T +AACCAACTCGATGGAG-1_7_130895425_A_C_- AACCAACTCGATGGAG-1 7 130895425 A C - 1 1 A>C T>G +AAAGGTACACCGTGCA-1_9_3000544_T_A_- AAAGGTACACCGTGCA-1 9 3000544 T A - 1 1 T>A A>T +AAAGGTATCCCTCTCC-1_13_44869614_A_G_+ AAAGGTATCCCTCTCC-1 13 44869614 A G + 1 1 A>G A>G +AAACGCTCATCAACCA-1_8_65778039_G_A_+ AAACGCTCATCAACCA-1 8 65778039 G A + 1 1 G>A G>A +AACCTTTTCCTAGCGG-1_16_57391688_T_G_- AACCTTTTCCTAGCGG-1 16 57391688 T G - 1 1 T>G A>C +AAGAACAGTCGGCTAC-1_5_146261080_C_A_+ AAGAACAGTCGGCTAC-1 5 146261080 C A + 1 1 C>A C>A +AACTTCTTCTTCACGC-1_3_146983690_C_T_+ AACTTCTTCTTCACGC-1 3 146983690 C T + 1 1 C>T C>T +AAACGCTAGGTTACAA-1_2_119018291_G_A_- AAACGCTAGGTTACAA-1 2 119018291 G A - 1 1 G>A C>T +AACCACAGTGTTCCTC-1_19_21392339_G_A_- AACCACAGTGTTCCTC-1 19 21392339 G A - 1 1 G>A C>T +AACCTTTCACACCTGG-1_16_22512511_C_T_- AACCTTTCACACCTGG-1 16 22512511 C T - 1 1 C>T G>A +AAGACTCGTGGTACAG-1_9_44392310_C_T_+ AAGACTCGTGGTACAG-1 9 44392310 C T + 1 1 C>T C>T +AAGACTCTCATTGGTG-1_16_56015624_G_T_- AAGACTCTCATTGGTG-1 16 56015624 G T - 1 1 G>T C>A +AACCACAAGCTTTGTG-1_10_72674808_C_T_+ AACCACAAGCTTTGTG-1 10 72674808 C T + 1 1 C>T C>T +AAATGGACATAAGATG-1_X_73853937_A_T_- AAATGGACATAAGATG-1 X 73853937 A T - 1 1 A>T T>A +AAACGCTCAGTAGGAC-1_13_49462934_C_T_+ AAACGCTCAGTAGGAC-1 13 49462934 C T + 1 1 C>T C>T +AACAAAGTCCCATTTA-1_2_174346498_T_G_+ AACAAAGTCCCATTTA-1 2 174346498 T G + 1 1 T>G T>G +AACACACAGATGGCAC-1_17_39847458_A_G_- AACACACAGATGGCAC-1 17 39847458 A G - 1 1 A>G T>C +AAGAACATCCTGGTCT-1_16_90481877_A_G_+ AAGAACATCCTGGTCT-1 16 90481877 A G + 1 1 A>G A>G +AACGAAACAACTACGT-1_9_37546089_T_C_- AACGAAACAACTACGT-1 9 37546089 T C - 1 1 T>C A>G +AAGACTCAGACTCAAA-1_17_81001456_T_A_+ AAGACTCAGACTCAAA-1 17 81001456 T A + 1 1 T>A T>A +AAACGAAAGTGGACTG-1_12_78843244_G_A_- AAACGAAAGTGGACTG-1 12 78843244 G A - 1 1 G>A C>T +AACACACAGGATCACG-1_13_74035152_T_C_+ AACACACAGGATCACG-1 13 74035152 T C + 1 1 T>C T>C +AAAGTGATCCGCTGTT-1_17_39847435_A_G_- AAAGTGATCCGCTGTT-1 17 39847435 A G - 1 1 A>G T>C +AAACGAAGTTCATCTT-1_9_66451484_T_C_+ AAACGAAGTTCATCTT-1 9 66451484 T C + 1 1 T>C T>C +AAACCCAGTTCTGACA-1_X_167207170_G_T_- AAACCCAGTTCTGACA-1 X 167207170 G T - 1 1 G>T C>A +AACGTCATCCATCTAT-1_2_98666572_A_T_- AACGTCATCCATCTAT-1 2 98666572 A T - 1 1 A>T T>A +AACGGGAAGTTGCCCG-1_6_5739028_G_A_+ AACGGGAAGTTGCCCG-1 6 5739028 G A + 1 1 G>A G>A +AACAACCTCCACAAGT-1_12_80950171_A_G_+ AACAACCTCCACAAGT-1 12 80950171 A G + 1 1 A>G A>G +AACTTCTTCTTCACGC-1_3_146983755_C_T_+ AACTTCTTCTTCACGC-1 3 146983755 C T + 1 1 C>T C>T +AACACACGTCCGAAAG-1_11_76416896_C_A_- AACACACGTCCGAAAG-1 11 76416896 C A - 1 1 C>A G>T +AACCAACTCGGAAGGT-1_3_14900733_T_C_+ AACCAACTCGGAAGGT-1 3 14900733 T C + 1 1 T>C T>C +AAGAACAGTCGGCTAC-1_19_7198341_G_A_- AAGAACAGTCGGCTAC-1 19 7198341 G A - 1 1 G>A C>T +AACCTTTTCCGTGTGG-1_19_5802157_T_C_- AACCTTTTCCGTGTGG-1 19 5802157 T C - 1 1 T>C A>G +AAGAACACATTCCTCG-1_5_135908525_A_G_- AAGAACACATTCCTCG-1 5 135908525 A G - 1 1 A>G T>C +AAAGGGCAGGACATCG-1_6_28575706_T_A_+ AAAGGGCAGGACATCG-1 6 28575706 T A + 1 1 T>A T>A +AACAAAGTCCTACCGT-1_17_39847403_T_G_- AACAAAGTCCTACCGT-1 17 39847403 T G - 1 1 T>G A>C +AACCCAATCCTCTAGC-1_X_157879732_C_T_- AACCCAATCCTCTAGC-1 X 157879732 C T - 1 1 C>T G>A +AAAGGATAGAGAGCAA-1_17_39847607_T_C_- AAAGGATAGAGAGCAA-1 17 39847607 T C - 1 1 T>C A>G +AACAAGAGTAGAATGT-1_5_142904427_T_C_- AACAAGAGTAGAATGT-1 5 142904427 T C - 1 1 T>C A>G +AAATGGAGTAGCGCCT-1_2_98666620_T_A_- AAATGGAGTAGCGCCT-1 2 98666620 T A - 1 1 T>A A>T +AACCACAAGCTTTGTG-1_11_119538921_G_A_- AACCACAAGCTTTGTG-1 11 119538921 G A - 1 1 G>A C>T +AAACGAAAGCCGATTT-1_4_136880283_C_G_- AAACGAAAGCCGATTT-1 4 136880283 C G - 1 1 C>G G>C +AAACGAACAACCGACC-1_17_39847263_A_C_+ AAACGAACAACCGACC-1 17 39847263 A C + 1 1 A>C A>C +AAAGTGAAGGCATCGA-1_9_78478537_G_A_- AAAGTGAAGGCATCGA-1 9 78478537 G A - 1 1 G>A C>T +AACACACAGCGGTAAC-1_5_146261004_G_C_+ AACACACAGCGGTAAC-1 5 146261004 G C + 1 1 G>C G>C +AAGACTCCAGGCGAAT-1_11_107497526_G_T_+ AAGACTCCAGGCGAAT-1 11 107497526 G T + 1 1 G>T G>T +AAAGGGCTCATAGGCT-1_X_166385843_C_T_+ AAAGGGCTCATAGGCT-1 X 166385843 C T + 1 1 C>T C>T +AAAGTGAAGGGCCAAT-1_17_39848018_C_T_+ AAAGTGAAGGGCCAAT-1 17 39848018 C T + 1 1 C>T C>T +AAAGGTAAGACTTCAC-1_3_90489455_A_T_- AAAGGTAAGACTTCAC-1 3 90489455 A T - 1 1 A>T T>A +AAACGAAAGGTAGTCG-1_8_120674095_G_A_+ AAACGAAAGGTAGTCG-1 8 120674095 G A + 1 1 G>A G>A +AACAAAGTCTTAGCTT-1_4_41715115_G_A_- AACAAAGTCTTAGCTT-1 4 41715115 G A - 1 1 G>A C>T +AAGATAGAGGCCACTC-1_7_103826685_G_T_- AAGATAGAGGCCACTC-1 7 103826685 G T - 1 28 G>T C>A +AACCATGCAGATTAAG-1_12_110691135_G_A_- AACCATGCAGATTAAG-1 12 110691135 G A - 1 1 G>A C>T +AAATGGACACCCGTAG-1_5_34630528_G_C_+ AAATGGACACCCGTAG-1 5 34630528 G C + 1 1 G>C G>C +AAAGGATAGCGTTGTT-1_X_7922951_G_C_+ AAAGGATAGCGTTGTT-1 X 7922951 G C + 1 1 G>C G>C +AACCAACTCAGTGGGA-1_17_39847435_A_G_- AACCAACTCAGTGGGA-1 17 39847435 A G - 1 1 A>G T>C +AACAAAGGTGTAGTGG-1_16_57391677_C_G_- AACAAAGGTGTAGTGG-1 16 57391677 C G - 2 2 C>G G>C +AAATGGACACGGAAGT-1_2_173244976_C_T_- AAATGGACACGGAAGT-1 2 173244976 C T - 1 1 C>T G>A +AAACCCAAGATTGCGG-1_4_120968411_G_A_- AAACCCAAGATTGCGG-1 4 120968411 G A - 1 1 G>A C>T +AACACACAGTGAGTGC-1_11_77711983_T_C_+ AACACACAGTGAGTGC-1 11 77711983 T C + 1 1 T>C T>C +AACGGGATCTGTGCTC-1_17_37003702_A_T_+ AACGGGATCTGTGCTC-1 17 37003702 A T + 1 1 A>T A>T +AACCAACAGGATACGC-1_17_39847474_T_C_- AACCAACAGGATACGC-1 17 39847474 T C - 1 1 T>C A>G +AAATGGAAGTTCAACC-1_13_56288847_G_A_- AAATGGAAGTTCAACC-1 13 56288847 G A - 1 1 G>A C>T +AAGATAGAGCCAACCC-1_15_6756725_A_C_+ AAGATAGAGCCAACCC-1 15 6756725 A C + 1 1 A>C A>C +AACACACAGTGCACAG-1_12_102955847_A_G_+ AACACACAGTGCACAG-1 12 102955847 A G + 1 1 A>G A>G +AACAACCAGTAATACG-1_17_12232151_T_C_- AACAACCAGTAATACG-1 17 12232151 T C - 1 1 T>C A>G +AACAAAGTCCCGTTGT-1_9_57010982_G_T_+ AACAAAGTCCCGTTGT-1 9 57010982 G T + 1 1 G>T G>T +AAAGTCCCACCACATA-1_7_46855347_A_T_+ AAAGTCCCACCACATA-1 7 46855347 A T + 1 1 A>T A>T +AACGTCAAGAACTCCT-1_17_39847992_A_T_- AACGTCAAGAACTCCT-1 17 39847992 A T - 1 1 A>T T>A +AACAAGAGTTCATCTT-1_16_33058775_A_G_+ AACAAGAGTTCATCTT-1 16 33058775 A G + 1 1 A>G A>G +AAACGAAAGCGAACTG-1_10_83762620_C_T_+ AAACGAAAGCGAACTG-1 10 83762620 C T + 1 1 C>T C>T +AAGAACACAACCGCTG-1_10_11151845_C_T_+ AAGAACACAACCGCTG-1 10 11151845 C T + 1 1 C>T C>T +AAAGGTATCCCTCTCC-1_9_3004626_A_T_- AAAGGTATCCCTCTCC-1 9 3004626 A T - 1 1 A>T T>A +AACTTCTCATGAATAG-1_6_86864293_C_G_+ AACTTCTCATGAATAG-1 6 86864293 C G + 1 1 C>G C>G +AACAAGACACAATCTG-1_X_75109581_A_C_+ AACAAGACACAATCTG-1 X 75109581 A C + 1 1 A>C A>C +AAGACAAGTCGAATTC-1_10_5337117_G_A_- AAGACAAGTCGAATTC-1 10 5337117 G A - 1 1 G>A C>T +AAACGAAGTGTTTACG-1_6_136173351_G_A_- AAACGAAGTGTTTACG-1 6 136173351 G A - 1 1 G>A C>T +AACCCAAAGAATTGTG-1_2_130786147_T_C_- AACCCAAAGAATTGTG-1 2 130786147 T C - 1 1 T>C A>G +AAAGTCCGTGACTGTT-1_3_33051016_T_A_- AAAGTCCGTGACTGTT-1 3 33051016 T A - 1 1 T>A A>T +AACAAAGAGCCGATTT-1_8_45816770_C_T_+ AACAAAGAGCCGATTT-1 8 45816770 C T + 1 1 C>T C>T +AAAGTCCCACAGTATC-1_X_95857004_G_T_+ AAAGTCCCACAGTATC-1 X 95857004 G T + 1 1 G>T G>T +AACCACATCCATGCAA-1_MT_14924_T_A_+ AACCACATCCATGCAA-1 MT 14924 T A + 1 1 T>A T>A +AACCCAAGTATCGATC-1_16_43587543_A_G_+ AACCCAAGTATCGATC-1 16 43587543 A G + 1 1 A>G A>G +AAGAACACACTAGGTT-1_10_70025254_C_T_+ AAGAACACACTAGGTT-1 10 70025254 C T + 1 1 C>T C>T +AAGATAGGTCATCAGT-1_16_94665959_G_A_+ AAGATAGGTCATCAGT-1 16 94665959 G A + 1 1 G>A G>A +AACGTCACAAGAATGT-1_2_5379332_A_T_- AACGTCACAAGAATGT-1 2 5379332 A T - 1 1 A>T T>A +AACCAACCAGTCGCTG-1_16_94468867_C_T_+ AACCAACCAGTCGCTG-1 16 94468867 C T + 1 1 C>T C>T +AAACGAAGTGTTTACG-1_11_62138282_C_G_+ AAACGAAGTGTTTACG-1 11 62138282 C G + 1 1 C>G C>G +AAAGGATAGTCCTGTA-1_8_111719457_C_T_- AAAGGATAGTCCTGTA-1 8 111719457 C T - 1 1 C>T G>A +AAGACAAAGAAGGGAT-1_19_45792458_G_A_- AAGACAAAGAAGGGAT-1 19 45792458 G A - 1 1 G>A C>T +AAAGTGACATGTTCAG-1_1_160221071_C_T_- AAAGTGACATGTTCAG-1 1 160221071 C T - 1 1 C>T G>A +AACCATGTCATCGCTC-1_4_134898006_G_T_- AACCATGTCATCGCTC-1 4 134898006 G T - 1 1 G>T C>A +AACTTCTAGAGACAAG-1_17_39847219_G_A_+ AACTTCTAGAGACAAG-1 17 39847219 G A + 1 1 G>A G>A +AACAACCAGTTACTCG-1_11_55395903_G_C_- AACAACCAGTTACTCG-1 11 55395903 G C - 1 1 G>C C>G +AAATGGAAGCAGATAT-1_16_59978400_T_A_- AAATGGAAGCAGATAT-1 16 59978400 T A - 1 1 T>A A>T +AACACACCAGACCAGA-1_9_34553054_A_C_+ AACACACCAGACCAGA-1 9 34553054 A C + 1 1 A>C A>C +AAAGGTAAGGACAGTC-1_7_45002986_T_G_- AAAGGTAAGGACAGTC-1 7 45002986 T G - 1 1 T>G A>C +AAACCCACATATCTGG-1_17_70701947_A_G_+ AAACCCACATATCTGG-1 17 70701947 A G + 1 1 A>G A>G +AAATGGAGTTACACAC-1_3_88747608_G_A_- AAATGGAGTTACACAC-1 3 88747608 G A - 1 1 G>A C>T +AACCTGAGTCTGTAGT-1_16_23334619_A_T_+ AACCTGAGTCTGTAGT-1 16 23334619 A T + 1 1 A>T A>T +AACGAAAAGCTAAACA-1_17_33584533_A_G_+ AACGAAAAGCTAAACA-1 17 33584533 A G + 1 1 A>G A>G +AACAAGAGTGGCGTAA-1_11_64083082_G_T_+ AACAAGAGTGGCGTAA-1 11 64083082 G T + 1 1 G>T G>T +AAACCCACAAAGACGC-1_17_29100517_A_G_+ AAACCCACAAAGACGC-1 17 29100517 A G + 1 1 A>G A>G +AACAAAGAGCCGATTT-1_14_124454915_T_C_- AACAAAGAGCCGATTT-1 14 124454915 T C - 1 1 T>C A>G +AAAGTGAGTATCACCA-1_16_57391688_T_G_- AAAGTGAGTATCACCA-1 16 57391688 T G - 1 1 T>G A>C +AACCTGAGTCTGTAGT-1_16_23334605_G_A_+ AACCTGAGTCTGTAGT-1 16 23334605 G A + 1 1 G>A G>A +AACCAACTCGGCACTG-1_12_99645608_T_C_+ AACCAACTCGGCACTG-1 12 99645608 T C + 1 1 T>C T>C +AACTTCTAGCAGATAT-1_1_158356238_G_C_- AACTTCTAGCAGATAT-1 1 158356238 G C - 1 1 G>C C>G +AAACGAAGTTCATCTT-1_7_109520610_G_A_+ AAACGAAGTTCATCTT-1 7 109520610 G A + 1 2 G>A G>A +AACTTCTCATGAATAG-1_2_49240296_G_A_+ AACTTCTCATGAATAG-1 2 49240296 G A + 1 1 G>A G>A +AACAGGGCAGATTTCG-1_1_171276841_G_C_+ AACAGGGCAGATTTCG-1 1 171276841 G C + 1 1 G>C G>C +AAGATAGAGGCCACTC-1_11_32297109_G_T_+ AAGATAGAGGCCACTC-1 11 32297109 G T + 1 4 G>T G>T +AAGACTCCAACACAGG-1_11_19018911_C_A_- AAGACTCCAACACAGG-1 11 19018911 C A - 1 1 C>A G>T +AAACGCTCATCAACCA-1_2_24827328_G_C_- AAACGCTCATCAACCA-1 2 24827328 G C - 1 1 G>C C>G +AACCAACCAGTCGCTG-1_5_76999777_C_T_+ AACCAACCAGTCGCTG-1 5 76999777 C T + 1 1 C>T C>T +AAAGTCCCACCACATA-1_X_136733091_C_A_- AAAGTCCCACCACATA-1 X 136733091 C A - 1 1 C>A G>T +AAACCCACACCGTGGT-1_8_3643529_A_G_+ AAACCCACACCGTGGT-1 8 3643529 A G + 1 1 A>G A>G +AAGAACAGTTCGGTTA-1_4_149125342_T_G_- AAGAACAGTTCGGTTA-1 4 149125342 T G - 1 1 T>G A>C +AACCAACTCGATGGAG-1_16_91563847_G_T_+ AACCAACTCGATGGAG-1 16 91563847 G T + 1 1 G>T G>T +AAGACTCGTGGTACAG-1_7_81769226_C_T_+ AAGACTCGTGGTACAG-1 7 81769226 C T + 1 1 C>T C>T +AAGAACATCTCCGAAA-1_16_35794173_G_C_+ AAGAACATCTCCGAAA-1 16 35794173 G C + 1 1 G>C G>C +AAGATAGCAATAACGA-1_16_29608845_T_G_+ AAGATAGCAATAACGA-1 16 29608845 T G + 1 1 T>G T>G +AACCACAAGCTTTGTG-1_15_98518957_G_A_- AACCACAAGCTTTGTG-1 15 98518957 G A - 1 1 G>A C>T +AAAGGATAGTCCTGTA-1_1_181903782_C_T_- AAAGGATAGTCCTGTA-1 1 181903782 C T - 1 1 C>T G>A +AAAGGATAGTTCCGGC-1_8_94153977_G_C_+ AAAGGATAGTTCCGGC-1 8 94153977 G C + 1 1 G>C G>C +AACACACGTTTGTTCT-1_10_127182653_G_A_- AACACACGTTTGTTCT-1 10 127182653 G A - 1 1 G>A C>T +AAAGTCCAGTCGGCCT-1_4_134127625_G_A_- AAAGTCCAGTCGGCCT-1 4 134127625 G A - 1 1 G>A C>T +AAACCCAAGAGGTTAT-1_10_39819864_A_G_+ AAACCCAAGAGGTTAT-1 10 39819864 A G + 1 1 A>G A>G +AACACACCAGACCAGA-1_15_99934308_T_C_+ AACACACCAGACCAGA-1 15 99934308 T C + 1 1 T>C T>C +AAACGCTCAGTAGGAC-1_2_93201734_C_T_+ AAACGCTCAGTAGGAC-1 2 93201734 C T + 1 1 C>T C>T +AACAAAGCACGGCACT-1_7_103826647_A_T_- AACAAAGCACGGCACT-1 7 103826647 A T - 1 16 A>T T>A +AACTTCTAGACGCAGT-1_17_39847607_T_C_+ AACTTCTAGACGCAGT-1 17 39847607 T C + 1 2 T>C T>C +AACCTTTAGGGTATAT-1_5_49307900_A_C_- AACCTTTAGGGTATAT-1 5 49307900 A C - 1 1 A>C T>G +AACAAAGTCATTTCCA-1_13_76978717_T_C_+ AACAAAGTCATTTCCA-1 13 76978717 T C + 1 1 T>C T>C +AACACACCAGACCAGA-1_9_96471108_C_T_- AACACACCAGACCAGA-1 9 96471108 C T - 1 1 C>T G>A +AACAACCGTATGTCTG-1_6_58905458_C_T_- AACAACCGTATGTCTG-1 6 58905458 C T - 1 1 C>T G>A +AAAGTCCGTACGTACT-1_8_125107575_C_A_+ AAAGTCCGTACGTACT-1 8 125107575 C A + 1 1 C>A C>A +AAAGGTATCTTTGCGC-1_4_136051177_G_A_- AAAGGTATCTTTGCGC-1 4 136051177 G A - 1 1 G>A C>T +AAACGAAGTTCATCTT-1_9_3035203_G_T_- AAACGAAGTTCATCTT-1 9 3035203 G T - 1 1 G>T C>A +AACGAAAGTCCTCATC-1_9_123462088_A_G_+ AACGAAAGTCCTCATC-1 9 123462088 A G + 1 1 A>G A>G +AAGACAAGTAACAGTA-1_12_91715894_C_A_- AAGACAAGTAACAGTA-1 12 91715894 C A - 1 1 C>A G>T +AAGACTCTCGGAGATG-1_5_129882498_G_A_- AAGACTCTCGGAGATG-1 5 129882498 G A - 1 1 G>A C>T +AAAGTCCGTAGACACG-1_11_105771925_T_G_+ AAAGTCCGTAGACACG-1 11 105771925 T G + 1 1 T>G T>G +AAGAACAGTCGGCTAC-1_5_146261106_C_G_+ AAGAACAGTCGGCTAC-1 5 146261106 C G + 1 1 C>G C>G +AACGGGAAGTCCCTAA-1_5_146261122_A_G_+ AACGGGAAGTCCCTAA-1 5 146261122 A G + 1 1 A>G A>G +AACAACCGTATGTCTG-1_14_18811889_C_A_- AACAACCGTATGTCTG-1 14 18811889 C A - 1 1 C>A G>T +AACCTGAGTCTGTAGT-1_10_60302541_C_T_+ AACCTGAGTCTGTAGT-1 10 60302541 C T + 1 1 C>T C>T +AAAGTCCCACCACATA-1_X_83041969_A_G_+ AAAGTCCCACCACATA-1 X 83041969 A G + 1 1 A>G A>G +AAACCCAGTCACCGCA-1_2_174346558_C_T_+ AAACCCAGTCACCGCA-1 2 174346558 C T + 1 1 C>T C>T +AAGATAGGTCTCACAA-1_16_57391679_G_T_- AAGATAGGTCTCACAA-1 16 57391679 G T - 1 1 G>T C>A +AACAACCAGACATATG-1_9_108096231_G_A_- AACAACCAGACATATG-1 9 108096231 G A - 1 1 G>A C>T +AACAGGGTCTTCCACG-1_5_142903311_G_A_- AACAGGGTCTTCCACG-1 5 142903311 G A - 1 1 G>A C>T +AAAGGATGTACCATAC-1_1_93015639_G_A_- AAAGGATGTACCATAC-1 1 93015639 G A - 1 1 G>A C>T +AACAACCAGCCTCTGG-1_2_70602015_G_A_+ AACAACCAGCCTCTGG-1 2 70602015 G A + 1 1 G>A G>A +AAAGGGCCAACCAATC-1_13_97190545_T_C_- AAAGGGCCAACCAATC-1 13 97190545 T C - 1 1 T>C A>G +AAAGGTAGTACACGCC-1_17_39847458_A_G_- AAAGGTAGTACACGCC-1 17 39847458 A G - 1 1 A>G T>C +AACCAACGTACATACC-1_5_23464734_C_T_+ AACCAACGTACATACC-1 5 23464734 C T + 1 1 C>T C>T +AACAACCCAACCGACC-1_17_39847403_T_G_- AACAACCCAACCGACC-1 17 39847403 T G - 1 1 T>G A>C +AAACGAAGTTCATCTT-1_10_116910013_A_G_- AAACGAAGTTCATCTT-1 10 116910013 A G - 1 1 A>G T>C +AAGATAGCAATAACGA-1_11_22836394_T_C_- AAGATAGCAATAACGA-1 11 22836394 T C - 1 1 T>C A>G +AACAGGGGTTAAGAAC-1_15_39682207_A_G_+ AACAGGGGTTAAGAAC-1 15 39682207 A G + 1 1 A>G A>G +AAACGCTCATCAACCA-1_9_56223610_T_C_- AAACGCTCATCAACCA-1 9 56223610 T C - 1 1 T>C A>G +AACGTCACATGAATCC-1_17_39848018_C_T_+ AACGTCACATGAATCC-1 17 39848018 C T + 2 2 C>T C>T AACCATGGTTTCGTGA-1_19_5799303_G_A_- AACCATGGTTTCGTGA-1 19 5799303 G A - 1 1 G>A C>T -AACCCAATCCTCTAGC-1_19_5802658_C_G_- AACCCAATCCTCTAGC-1 19 5802658 C G - 1 2 C>G G>C +AACTTCTTCTTCCCGA-1_9_123461940_T_G_+ AACTTCTTCTTCCCGA-1 9 123461940 T G + 1 1 T>G T>G +AACAAAGAGTGGAATT-1_5_146261076_T_C_+ AACAAAGAGTGGAATT-1 5 146261076 T C + 1 1 T>C T>C +AACCTGATCGCTCATC-1_2_156147481_G_A_- AACCTGATCGCTCATC-1 2 156147481 G A - 1 1 G>A C>T +AAACGCTCATCAACCA-1_17_39847403_T_G_+ AAACGCTCATCAACCA-1 17 39847403 T G + 1 1 T>G T>G +AAACCCAGTCGTCTCT-1_16_57391454_T_C_- AAACCCAGTCGTCTCT-1 16 57391454 T C - 1 1 T>C A>G +AAGACAAAGAAGGGAT-1_19_5799269_T_C_- AAGACAAAGAAGGGAT-1 19 5799269 T C - 1 1 T>C A>G +AACGAAACAACTACGT-1_9_64185912_G_A_- AACGAAACAACTACGT-1 9 64185912 G A - 1 1 G>A C>T +AACTTCTGTAACGTTC-1_16_57391454_T_C_- AACTTCTGTAACGTTC-1 16 57391454 T C - 2 2 T>C A>G +AACAGGGGTTAAGAAC-1_17_70662748_G_A_+ AACAGGGGTTAAGAAC-1 17 70662748 G A + 1 1 G>A G>A +AACAAAGAGCCTATTG-1_12_84075834_C_T_+ AACAAAGAGCCTATTG-1 12 84075834 C T + 1 1 C>T C>T +AAATGGAGTAGCGCCT-1_5_146261106_C_G_+ AAATGGAGTAGCGCCT-1 5 146261106 C G + 1 1 C>G C>G +AAGATAGCAATAACGA-1_1_59639468_G_T_- AAGATAGCAATAACGA-1 1 59639468 G T - 1 1 G>T C>A +AAAGGTACAGGACAGT-1_11_16284498_C_T_+ AAAGGTACAGGACAGT-1 11 16284498 C T + 1 1 C>T C>T +AACACACAGATGGCAC-1_9_108847590_A_G_+ AACACACAGATGGCAC-1 9 108847590 A G + 1 1 A>G A>G +AACCTGATCGGATACT-1_14_27359270_C_G_+ AACCTGATCGGATACT-1 14 27359270 C G + 1 1 C>G C>G +AACAACCAGTTACTCG-1_1_86356431_G_A_- AACAACCAGTTACTCG-1 1 86356431 G A - 1 1 G>A C>T +AAGACAACATCAACCA-1_5_142461871_A_G_+ AAGACAACATCAACCA-1 5 142461871 A G + 1 1 A>G A>G +AAATGGATCGGAAGGT-1_7_45122847_T_C_- AAATGGATCGGAAGGT-1 7 45122847 T C - 1 1 T>C A>G +AAACCCACAGAGGAAA-1_17_70963741_A_G_+ AAACCCACAGAGGAAA-1 17 70963741 A G + 1 1 A>G A>G +AAATGGACACCCGTAG-1_7_100814044_G_T_+ AAATGGACACCCGTAG-1 7 100814044 G T + 1 1 G>T G>T +AACACACAGTGCACAG-1_2_91002765_G_A_+ AACACACAGTGCACAG-1 2 91002765 G A + 1 1 G>A G>A +AACCATGGTGAGTTTC-1_8_18895440_G_A_- AACCATGGTGAGTTTC-1 8 18895440 G A - 1 1 G>A C>T +AACAAGAAGGTTCAGG-1_4_123194636_C_T_+ AACAAGAAGGTTCAGG-1 4 123194636 C T + 1 1 C>T C>T +AACCTGAAGGTAAGTT-1_7_27281978_C_T_+ AACCTGAAGGTAAGTT-1 7 27281978 C T + 1 1 C>T C>T +AAACCCACACCGTGGT-1_5_104079280_G_A_- AAACCCACACCGTGGT-1 5 104079280 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_17_87433488_G_A_- AAACGCTCAGTAGGAC-1 17 87433488 G A - 1 1 G>A C>T +AAAGGGCCAACACAGG-1_5_121947991_G_T_- AAAGGGCCAACACAGG-1 5 121947991 G T - 1 1 G>T C>A +AAACCCAGTGCTCGTG-1_8_94154086_C_G_+ AAACCCAGTGCTCGTG-1 8 94154086 C G + 1 1 C>G C>G +AACTTCTTCGCGATCG-1_4_59222763_T_C_+ AACTTCTTCGCGATCG-1 4 59222763 T C + 1 1 T>C T>C +AAGATAGCACGCGTGT-1_5_99581095_T_C_- AAGATAGCACGCGTGT-1 5 99581095 T C - 1 1 T>C A>G +AAGACAAAGGGCAGGA-1_9_123709595_C_T_- AAGACAAAGGGCAGGA-1 9 123709595 C T - 1 1 C>T G>A +AAACGCTCAGTAGGAC-1_17_35238680_C_T_+ AAACGCTCAGTAGGAC-1 17 35238680 C T + 1 1 C>T C>T +AACAGGGAGAGGGTCT-1_17_39847607_T_C_+ AACAGGGAGAGGGTCT-1 17 39847607 T C + 1 1 T>C T>C +AAAGTCCCACAGTATC-1_X_98578173_A_T_- AAAGTCCCACAGTATC-1 X 98578173 A T - 1 1 A>T T>A +AAGACTCGTGGTACAG-1_17_24721073_T_C_+ AAGACTCGTGGTACAG-1 17 24721073 T C + 1 1 T>C T>C +AAGACTCGTCAAGTTC-1_17_39847711_G_A_+ AAGACTCGTCAAGTTC-1 17 39847711 G A + 1 1 G>A G>A +AAAGGATAGTCCTGTA-1_3_93564584_A_T_+ AAAGGATAGTCCTGTA-1 3 93564584 A T + 1 1 A>T A>T +AAACCCACATATCTCT-1_5_146261076_T_C_+ AAACCCACATATCTCT-1 5 146261076 T C + 1 1 T>C T>C +AACCAACGTTTCGTGA-1_9_44697581_T_C_- AACCAACGTTTCGTGA-1 9 44697581 T C - 1 1 T>C A>G +AACCCAAGTATCGATC-1_17_24436275_T_C_+ AACCCAAGTATCGATC-1 17 24436275 T C + 1 1 T>C T>C +AAGATAGGTCATCAGT-1_17_63424951_A_G_- AAGATAGGTCATCAGT-1 17 63424951 A G - 1 1 A>G T>C +AACGTCACATAGATGA-1_2_42608193_T_A_- AACGTCACATAGATGA-1 2 42608193 T A - 1 1 T>A A>T +AAAGTCCTCCGATGCG-1_10_9828338_T_C_- AAAGTCCTCCGATGCG-1 10 9828338 T C - 1 1 T>C A>G +AAGATAGGTCATCAGT-1_17_48386894_C_T_- AAGATAGGTCATCAGT-1 17 48386894 C T - 1 1 C>T G>A +AACCACATCCTAGCTC-1_5_131096240_C_T_- AACCACATCCTAGCTC-1 5 131096240 C T - 1 1 C>T G>A +AACGAAAGTCCAAATC-1_2_147061977_G_A_+ AACGAAAGTCCAAATC-1 2 147061977 G A + 1 1 G>A G>A +AAGACTCCAACACAGG-1_4_120806186_C_T_- AAGACTCCAACACAGG-1 4 120806186 C T - 1 1 C>T G>A +AACTTCTAGGGATCTG-1_19_5107954_T_G_- AACTTCTAGGGATCTG-1 19 5107954 T G - 1 1 T>G A>C +AACCCAACAAGGATGC-1_9_3024448_C_T_- AACCCAACAAGGATGC-1 9 3024448 C T - 1 1 C>T G>A +AACACACTCGTAGCCG-1_17_39847403_T_G_+ AACACACTCGTAGCCG-1 17 39847403 T G + 2 3 T>G T>G +AACAAAGAGCCGATTT-1_14_124454917_T_C_- AACAAAGAGCCGATTT-1 14 124454917 T C - 1 1 T>C A>G +AACGTCACATAGATGA-1_2_121449979_T_A_+ AACGTCACATAGATGA-1 2 121449979 T A + 1 1 T>A T>A +AACGGGAAGCATACTC-1_5_146261106_C_G_+ AACGGGAAGCATACTC-1 5 146261106 C G + 1 1 C>G C>G +AACCACAAGACTTGTC-1_11_50104602_G_A_+ AACCACAAGACTTGTC-1 11 50104602 G A + 1 1 G>A G>A +AACTTCTCATGAATAG-1_16_62804051_C_T_- AACTTCTCATGAATAG-1 16 62804051 C T - 1 1 C>T G>A +AAAGGATGTGCTCGTG-1_5_71033618_T_C_- AAAGGATGTGCTCGTG-1 5 71033618 T C - 1 1 T>C A>G +AAAGGGCTCTCACTCG-1_10_100070545_G_A_+ AAAGGGCTCTCACTCG-1 10 100070545 G A + 1 1 G>A G>A +AACGAAAAGCTAAACA-1_2_174462570_A_G_- AACGAAAAGCTAAACA-1 2 174462570 A G - 1 1 A>G T>C +AAAGAACAGCCTGAAG-1_3_136937498_T_G_+ AAAGAACAGCCTGAAG-1 3 136937498 T G + 1 1 T>G T>G +AAGACTCGTCCAGAAG-1_7_68232263_A_T_+ AAGACTCGTCCAGAAG-1 7 68232263 A T + 1 1 A>T A>T +AAACGCTCAGTAGGAC-1_11_6419621_C_T_+ AAACGCTCAGTAGGAC-1 11 6419621 C T + 1 1 C>T C>T +AAACGAAAGGGAGGTG-1_8_72523275_T_G_- AAACGAAAGGGAGGTG-1 8 72523275 T G - 1 1 T>G A>C +AAACGAAAGGTAGTCG-1_5_114948835_A_G_+ AAACGAAAGGTAGTCG-1 5 114948835 A G + 1 1 A>G A>G +AACCTGAGTCGATTAC-1_15_98538845_A_T_- AACCTGAGTCGATTAC-1 15 98538845 A T - 1 1 A>T T>A +AACCCAAAGTTCTACG-1_17_39848018_C_T_+ AACCCAAAGTTCTACG-1 17 39848018 C T + 1 1 C>T C>T +AACCAACCAGATCCAT-1_7_81881354_T_C_- AACCAACCAGATCCAT-1 7 81881354 T C - 1 1 T>C A>G +AAAGGGCCAACACAGG-1_1_128279219_T_A_+ AAAGGGCCAACACAGG-1 1 128279219 T A + 1 1 T>A T>A +AAACGCTGTTTGACAC-1_5_144876667_G_A_- AAACGCTGTTTGACAC-1 5 144876667 G A - 1 1 G>A C>T +AACCCAAGTATCGATC-1_MT_5879_T_C_+ AACCCAAGTATCGATC-1 MT 5879 T C + 1 1 T>C T>C +AAACCCACAATCTCTT-1_19_4114518_G_A_- AAACCCACAATCTCTT-1 19 4114518 G A - 1 1 G>A C>T +AAACGCTCACCTAAAC-1_14_19278148_A_G_+ AAACGCTCACCTAAAC-1 14 19278148 A G + 1 1 A>G A>G +AAATGGAGTTACACAC-1_5_146261076_T_C_+ AAATGGAGTTACACAC-1 5 146261076 T C + 1 1 T>C T>C +AAGATAGAGACTTCAC-1_2_17347565_A_G_- AAGATAGAGACTTCAC-1 2 17347565 A G - 1 1 A>G T>C +AACAACCGTATGTCTG-1_12_109561034_C_A_+ AACAACCGTATGTCTG-1 12 109561034 C A + 1 1 C>A C>A +AAACCCACACCGTGGT-1_5_93195341_G_T_- AAACCCACACCGTGGT-1 5 93195341 G T - 1 1 G>T C>A +AAGATAGAGCTTGTGT-1_5_137329387_A_C_- AAGATAGAGCTTGTGT-1 5 137329387 A C - 1 1 A>C T>G +AACCAACTCAGTGGGA-1_4_102972002_A_T_+ AACCAACTCAGTGGGA-1 4 102972002 A T + 1 1 A>T A>T +AACCTTTAGGGTATAT-1_17_39848018_C_T_+ AACCTTTAGGGTATAT-1 17 39848018 C T + 1 1 C>T C>T +AAAGGGCTCTGCTAGA-1_1_174634972_T_C_+ AAAGGGCTCTGCTAGA-1 1 174634972 T C + 1 1 T>C T>C +AAGACTCCACATACTG-1_5_146261122_A_G_+ AAGACTCCACATACTG-1 5 146261122 A G + 1 1 A>G A>G +AAAGTCCAGAGTTGAT-1_17_24724199_T_G_- AAAGTCCAGAGTTGAT-1 17 24724199 T G - 1 1 T>G A>C +AACCAACGTTTCGTGA-1_10_32571532_T_A_- AACCAACGTTTCGTGA-1 10 32571532 T A - 1 1 T>A A>T +AACCCAAAGCGATCGA-1_12_3441659_T_G_+ AACCCAAAGCGATCGA-1 12 3441659 T G + 1 1 T>G T>G +AAACCCACAATCTCTT-1_X_136836988_C_A_+ AAACCCACAATCTCTT-1 X 136836988 C A + 1 1 C>A C>A +AACGGGATCAGGAACG-1_9_104215838_A_T_- AACGGGATCAGGAACG-1 9 104215838 A T - 1 1 A>T T>A +AACCAACGTCACCCTT-1_8_69895268_T_C_- AACCAACGTCACCCTT-1 8 69895268 T C - 1 1 T>C A>G +AACCAACCACGGTAGA-1_17_39844603_C_T_+ AACCAACCACGGTAGA-1 17 39844603 C T + 1 1 C>T C>T +AAAGTCCTCCGATGCG-1_X_136838195_T_A_+ AAAGTCCTCCGATGCG-1 X 136838195 T A + 1 3 T>A T>A +AAGAACACAGCACAGA-1_17_33952311_A_G_- AAGAACACAGCACAGA-1 17 33952311 A G - 1 1 A>G T>C +AACACACAGTGCACAG-1_8_78813984_A_C_- AACACACAGTGCACAG-1 8 78813984 A C - 1 1 A>C T>G +AACGAAATCCGTCAAA-1_11_107935841_G_A_- AACGAAATCCGTCAAA-1 11 107935841 G A - 1 1 G>A C>T +AACCACAAGCTTTGTG-1_2_28230500_C_T_+ AACCACAAGCTTTGTG-1 2 28230500 C T + 1 1 C>T C>T +AAACGAAAGGTAGTCG-1_X_48661938_A_G_+ AAACGAAAGGTAGTCG-1 X 48661938 A G + 1 1 A>G A>G +AAATGGACACATACTG-1_17_87433655_G_A_- AAATGGACACATACTG-1 17 87433655 G A - 1 1 G>A C>T +AACAGGGTCGACGCTG-1_2_134594493_G_A_- AACAGGGTCGACGCTG-1 2 134594493 G A - 1 1 G>A C>T +AAATGGAAGTTCAACC-1_16_29653862_A_G_+ AAATGGAAGTTCAACC-1 16 29653862 A G + 1 1 A>G A>G +AACCACACAATCTGCA-1_9_3000558_C_A_- AACCACACAATCTGCA-1 9 3000558 C A - 1 1 C>A G>T +AACTTCTCACTAACGT-1_9_54605085_C_T_- AACTTCTCACTAACGT-1 9 54605085 C T - 1 1 C>T G>A +AAGAACACATTCCTCG-1_17_39847403_T_G_+ AAGAACACATTCCTCG-1 17 39847403 T G + 1 1 T>G T>G +AAAGTCCAGTCTGGTT-1_19_38636778_G_A_+ AAAGTCCAGTCTGGTT-1 19 38636778 G A + 1 1 G>A G>A +AACGTCACATAGATGA-1_3_55850533_T_C_- AACGTCACATAGATGA-1 3 55850533 T C - 1 1 T>C A>G +AACAAAGGTGTAGTGG-1_16_57391685_G_A_- AACAAAGGTGTAGTGG-1 16 57391685 G A - 2 2 G>A C>T +AAACGAAGTGTTTACG-1_2_25562074_G_A_+ AAACGAAGTGTTTACG-1 2 25562074 G A + 1 1 G>A G>A +AAGACTCGTCCACATA-1_6_39802276_G_A_- AAGACTCGTCCACATA-1 6 39802276 G A - 1 1 G>A C>T +AACGTCATCTGGCTGG-1_14_52294434_C_T_+ AACGTCATCTGGCTGG-1 14 52294434 C T + 1 1 C>T C>T +AAAGTCCTCCTACAAG-1_6_125162000_T_C_- AAAGTCCTCCTACAAG-1 6 125162000 T C - 1 1 T>C A>G +AAGAACACACCGTGCA-1_7_81885507_A_G_- AAGAACACACCGTGCA-1 7 81885507 A G - 1 1 A>G T>C +AAAGGTACAAGAGCTG-1_2_91672248_C_T_+ AAAGGTACAAGAGCTG-1 2 91672248 C T + 1 1 C>T C>T +AAACGCTCATCAACCA-1_1_126375329_C_A_- AAACGCTCATCAACCA-1 1 126375329 C A - 1 1 C>A G>T +AAAGTCCTCCTACAAG-1_6_17666678_T_A_+ AAAGTCCTCCTACAAG-1 6 17666678 T A + 1 1 T>A T>A +AAGACTCGTGGTACAG-1_11_75588134_C_G_+ AAGACTCGTGGTACAG-1 11 75588134 C G + 1 1 C>G C>G +AAAGTCCCAGATGCGA-1_10_127281665_G_A_+ AAAGTCCCAGATGCGA-1 10 127281665 G A + 1 1 G>A G>A +AAACGCTGTAGAGGAA-1_17_64311333_G_A_- AAACGCTGTAGAGGAA-1 17 64311333 G A - 1 1 G>A C>T +AACCTTTTCACAGAGG-1_3_138926012_C_A_- AACCTTTTCACAGAGG-1 3 138926012 C A - 1 1 C>A G>T +AAGACTCGTCAAGTTC-1_4_155559147_C_T_+ AAGACTCGTCAAGTTC-1 4 155559147 C T + 1 1 C>T C>T +AACGGGAAGTTGCCCG-1_12_110691259_T_A_- AACGGGAAGTTGCCCG-1 12 110691259 T A - 1 1 T>A A>T +AACGTCACATCAGTCA-1_2_27351176_G_A_- AACGTCACATCAGTCA-1 2 27351176 G A - 1 1 G>A C>T +AAGACAACACCGCTGA-1_17_89099962_G_T_- AAGACAACACCGCTGA-1 17 89099962 G T - 1 1 G>T C>A +AACCTGATCGCTCATC-1_5_112419380_A_G_- AACCTGATCGCTCATC-1 5 112419380 A G - 1 1 A>G T>C +AACCTTTCATCGCTGG-1_17_39847435_A_G_+ AACCTTTCATCGCTGG-1 17 39847435 A G + 1 1 A>G A>G +AACCACATCAAAGAAC-1_17_39847403_T_G_+ AACCACATCAAAGAAC-1 17 39847403 T G + 1 1 T>G T>G +AACTTCTAGATACGAT-1_12_32976567_A_T_+ AACTTCTAGATACGAT-1 12 32976567 A T + 1 1 A>T A>T +AACGTCAAGCGAGGAG-1_17_39847607_T_C_+ AACGTCAAGCGAGGAG-1 17 39847607 T C + 1 1 T>C T>C +AACTTCTCACTAACGT-1_10_81388175_G_A_+ AACTTCTCACTAACGT-1 10 81388175 G A + 1 1 G>A G>A +AAGAACATCCTGGTCT-1_2_25707423_C_T_+ AAGAACATCCTGGTCT-1 2 25707423 C T + 1 1 C>T C>T +AACCTTTAGGGTATAT-1_9_3020461_C_T_- AACCTTTAGGGTATAT-1 9 3020461 C T - 1 1 C>T G>A +AACCACAAGCTTTGTG-1_9_72749652_C_T_+ AACCACAAGCTTTGTG-1 9 72749652 C T + 1 1 C>T C>T +AAAGGTAGTATGTGTC-1_19_5802631_G_T_- AAAGGTAGTATGTGTC-1 19 5802631 G T - 1 17 G>T C>A +AACCAACCAGATCCAT-1_7_81881353_A_C_- AACCAACCAGATCCAT-1 7 81881353 A C - 1 1 A>C T>G +AAACCCACAGTTCTAG-1_X_136214241_G_A_- AAACCCACAGTTCTAG-1 X 136214241 G A - 1 1 G>A C>T +AAAGTCCGTACGTACT-1_1_68878405_T_C_- AAAGTCCGTACGTACT-1 1 68878405 T C - 1 1 T>C A>G +AACGAAAAGCTAAACA-1_14_78564554_G_A_- AACGAAAAGCTAAACA-1 14 78564554 G A - 1 1 G>A C>T +AACCACAAGTTGCCTA-1_3_28359004_T_C_+ AACCACAAGTTGCCTA-1 3 28359004 T C + 1 1 T>C T>C +AAGAACAGTTGCAAGG-1_17_78375793_C_T_+ AAGAACAGTTGCAAGG-1 17 78375793 C T + 1 1 C>T C>T +AAACCCACACCGTGGT-1_X_167207442_G_A_- AAACCCACACCGTGGT-1 X 167207442 G A - 1 1 G>A C>T +AAAGGTACAGGACAGT-1_15_54602534_G_A_+ AAAGGTACAGGACAGT-1 15 54602534 G A + 1 1 G>A G>A +AAACGAAGTGTTTACG-1_16_57391679_G_T_- AAACGAAGTGTTTACG-1 16 57391679 G T - 1 1 G>T C>A +AAAGGTACAATTGCAC-1_19_10245431_G_A_- AAAGGTACAATTGCAC-1 19 10245431 G A - 1 1 G>A C>T +AAGACTCGTCAAGTTC-1_5_100654902_C_T_- AAGACTCGTCAAGTTC-1 5 100654902 C T - 1 1 C>T G>A +AAGATAGGTCATCAGT-1_MT_3441_A_G_+ AAGATAGGTCATCAGT-1 MT 3441 A G + 1 2 A>G A>G +AAGACTCGTGGTACAG-1_X_167207205_G_A_- AAGACTCGTGGTACAG-1 X 167207205 G A - 1 1 G>A C>T +AACCTGACAAACCACT-1_1_93705647_C_T_- AACCTGACAAACCACT-1 1 93705647 C T - 1 1 C>T G>A +AAACGCTGTCAACACT-1_1_180802670_G_A_- AAACGCTGTCAACACT-1 1 180802670 G A - 1 1 G>A C>T +AAAGGATTCTAGGCAT-1_8_46207560_G_C_- AAAGGATTCTAGGCAT-1 8 46207560 G C - 1 1 G>C C>G +AACCTTTAGACCAGAC-1_10_81182366_A_C_+ AACCTTTAGACCAGAC-1 10 81182366 A C + 1 1 A>C A>C +AACCCAATCTTGCAAG-1_8_17123769_A_G_- AACCCAATCTTGCAAG-1 8 17123769 A G - 1 1 A>G T>C +AAAGAACAGCTTCTAG-1_17_39847607_T_C_- AAAGAACAGCTTCTAG-1 17 39847607 T C - 1 1 T>C A>G +AACACACTCTGCGGGT-1_17_39848018_C_T_+ AACACACTCTGCGGGT-1 17 39848018 C T + 1 1 C>T C>T +AACCAACCAGATCCAT-1_4_76927976_G_C_- AACCAACCAGATCCAT-1 4 76927976 G C - 1 1 G>C C>G +AAACGCTGTGGGTTGA-1_17_39847403_T_G_+ AAACGCTGTGGGTTGA-1 17 39847403 T G + 1 1 T>G T>G +AACCAACCAGTCGCTG-1_11_101278066_G_A_- AACCAACCAGTCGCTG-1 11 101278066 G A - 1 1 G>A C>T +AAATGGAAGCAGATAT-1_4_138457006_T_A_+ AAATGGAAGCAGATAT-1 4 138457006 T A + 1 1 T>A T>A +AACGTCAAGACTCTTG-1_5_146261080_C_A_+ AACGTCAAGACTCTTG-1 5 146261080 C A + 1 1 C>A C>A +AACCTGACACTCTGCT-1_16_57391679_G_T_- AACCTGACACTCTGCT-1 16 57391679 G T - 1 1 G>T C>A +AACCTTTAGGGTATAT-1_9_3020477_T_C_- AACCTTTAGGGTATAT-1 9 3020477 T C - 1 1 T>C A>G +AAATGGAAGTCGGCCT-1_16_44140975_G_A_+ AAATGGAAGTCGGCCT-1 16 44140975 G A + 1 1 G>A G>A +AACTTCTCACTAACGT-1_5_120483893_C_T_- AACTTCTCACTAACGT-1 5 120483893 C T - 1 1 C>T G>A +AACAAAGGTCGCTGCA-1_6_124913958_T_C_- AACAAAGGTCGCTGCA-1 6 124913958 T C - 1 1 T>C A>G +AAGACAAGTAACAGTA-1_18_16650324_T_C_- AAGACAAGTAACAGTA-1 18 16650324 T C - 1 1 T>C A>G +AAACGCTGTCATGGCC-1_9_3035181_G_T_- AAACGCTGTCATGGCC-1 9 3035181 G T - 1 1 G>T C>A +AAATGGATCTCCACTG-1_5_142903331_G_A_- AAATGGATCTCCACTG-1 5 142903331 G A - 1 1 G>A C>T +AAATGGACATAATCCG-1_4_139291111_C_T_+ AAATGGACATAATCCG-1 4 139291111 C T + 1 1 C>T C>T +AACCATGTCATCGCTC-1_4_134898005_T_G_- AACCATGTCATCGCTC-1 4 134898005 T G - 1 1 T>G A>C +AACTTCTCAGCGGATA-1_3_33811695_A_G_+ AACTTCTCAGCGGATA-1 3 33811695 A G + 1 1 A>G A>G +AACTTCTCACTAACGT-1_17_24721256_C_T_+ AACTTCTCACTAACGT-1 17 24721256 C T + 1 2 C>T C>T +AACGTCACATAGATGA-1_17_23824939_G_A_- AACGTCACATAGATGA-1 17 23824939 G A - 1 1 G>A C>T +AAACGAAAGGCTTTCA-1_14_25886381_G_A_+ AAACGAAAGGCTTTCA-1 14 25886381 G A + 1 1 G>A G>A +AACGTCACAACCAGAG-1_4_9562275_A_G_- AACGTCACAACCAGAG-1 4 9562275 A G - 1 1 A>G T>C +AAATGGAAGTTCAACC-1_6_40396555_T_C_+ AAATGGAAGTTCAACC-1 6 40396555 T C + 1 1 T>C T>C +AACAAGAAGCAATTAG-1_12_44600036_C_T_+ AACAAGAAGCAATTAG-1 12 44600036 C T + 1 1 C>T C>T +AAACGAAAGACAACAT-1_2_5379370_T_G_- AAACGAAAGACAACAT-1 2 5379370 T G - 1 1 T>G A>C +AACGGGAAGTTACTCG-1_12_11325717_G_A_- AACGGGAAGTTACTCG-1 12 11325717 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_8_13940416_C_A_+ AAACGCTCAGTAGGAC-1 8 13940416 C A + 1 1 C>A C>A +AAGACTCAGTAACCTC-1_17_39848018_C_T_+ AAGACTCAGTAACCTC-1 17 39848018 C T + 1 1 C>T C>T +AAAGTCCTCGAACACT-1_16_20561152_C_G_+ AAAGTCCTCGAACACT-1 16 20561152 C G + 1 1 C>G C>G +AAAGGATGTGAGAGGG-1_17_27125154_C_T_- AAAGGATGTGAGAGGG-1 17 27125154 C T - 1 1 C>T G>A +AACCCAAAGAATTGTG-1_17_39848018_C_T_+ AACCCAAAGAATTGTG-1 17 39848018 C T + 1 1 C>T C>T +AAATGGAAGTAGAATC-1_4_41712269_G_A_- AAATGGAAGTAGAATC-1 4 41712269 G A - 1 1 G>A C>T +AAAGAACCAGCTTCGG-1_6_107570115_T_A_+ AAAGAACCAGCTTCGG-1 6 107570115 T A + 1 1 T>A T>A +AAACGAAGTTCATCTT-1_16_15888264_T_A_+ AAACGAAGTTCATCTT-1 16 15888264 T A + 1 1 T>A T>A +AACCACACAGCTTTGA-1_17_24721815_C_T_+ AACCACACAGCTTTGA-1 17 24721815 C T + 1 1 C>T C>T +AACTTCTCATGAATAG-1_13_8203851_T_A_+ AACTTCTCATGAATAG-1 13 8203851 T A + 1 1 T>A T>A +AACAACCCATGTAACC-1_16_96525513_C_A_+ AACAACCCATGTAACC-1 16 96525513 C A + 1 1 C>A C>A +AAAGTCCGTACGTACT-1_17_39847192_C_T_+ AAAGTCCGTACGTACT-1 17 39847192 C T + 1 2 C>T C>T +AACCTGACATCGTCCT-1_6_18853834_C_T_+ AACCTGACATCGTCCT-1 6 18853834 C T + 1 1 C>T C>T +AACCACATCGGAGATG-1_7_127022172_A_T_- AACCACATCGGAGATG-1 7 127022172 A T - 1 1 A>T T>A +AAAGAACAGAGGTTAT-1_17_27122741_G_A_- AAAGAACAGAGGTTAT-1 17 27122741 G A - 1 1 G>A C>T +AAACGCTTCTCCTGCA-1_10_86348859_G_A_+ AAACGCTTCTCCTGCA-1 10 86348859 G A + 1 1 G>A G>A +AAAGGTAGTCGAATTC-1_10_90970630_T_G_+ AAAGGTAGTCGAATTC-1 10 90970630 T G + 1 1 T>G T>G +AACGTCACACTCCTTG-1_16_40539572_A_G_+ AACGTCACACTCCTTG-1 16 40539572 A G + 1 1 A>G A>G +AACAACCCACACACGC-1_9_61913918_G_A_- AACAACCCACACACGC-1 9 61913918 G A - 1 1 G>A C>T +AAAGTCCGTGACTGTT-1_2_31281620_A_G_+ AAAGTCCGTGACTGTT-1 2 31281620 A G + 1 1 A>G A>G +AACGAAATCCTGTAAG-1_11_36677868_A_G_- AACGAAATCCTGTAAG-1 11 36677868 A G - 1 1 A>G T>C +AACGTCAAGAACTCCT-1_2_98667257_T_A_- AACGTCAAGAACTCCT-1 2 98667257 T A - 1 1 T>A A>T +AACCAACCAGTCGCTG-1_11_79579767_C_T_+ AACCAACCAGTCGCTG-1 11 79579767 C T + 1 1 C>T C>T +AAGATAGAGATGGTAT-1_2_156276745_T_C_+ AAGATAGAGATGGTAT-1 2 156276745 T C + 1 1 T>C T>C +AAATGGAAGGAGGGTG-1_17_39847458_A_G_- AAATGGAAGGAGGGTG-1 17 39847458 A G - 1 1 A>G T>C +AACCTGACATCGTCCT-1_19_53903474_C_G_+ AACCTGACATCGTCCT-1 19 53903474 C G + 1 1 C>G C>G +AAAGGGCTCTGCTAGA-1_MT_7462_C_T_+ AAAGGGCTCTGCTAGA-1 MT 7462 C T + 1 1 C>T C>T +AACAGGGGTGTTTACG-1_10_7934689_A_G_- AACAGGGGTGTTTACG-1 10 7934689 A G - 1 1 A>G T>C +AACCTTTAGGAGAGTA-1_17_39847756_T_G_+ AACCTTTAGGAGAGTA-1 17 39847756 T G + 1 1 T>G T>G +AAGACTCGTGGTACAG-1_3_158530785_A_T_- AAGACTCGTGGTACAG-1 3 158530785 A T - 1 1 A>T T>A +AAATGGACAAGTGGAC-1_13_99465376_G_A_- AAATGGACAAGTGGAC-1 13 99465376 G A - 1 1 G>A C>T +AAAGGATAGTTCCGGC-1_9_3000605_T_A_- AAAGGATAGTTCCGGC-1 9 3000605 T A - 1 1 T>A A>T +AAACCCAGTCAAATCC-1_8_108873870_A_G_+ AAACCCAGTCAAATCC-1 8 108873870 A G + 1 1 A>G A>G +AAAGAACCAGCTCCTT-1_9_3000567_G_T_- AAAGAACCAGCTCCTT-1 9 3000567 G T - 1 1 G>T C>A +AAAGTCCCACAGTATC-1_17_39848018_C_T_+ AAAGTCCCACAGTATC-1 17 39848018 C T + 1 1 C>T C>T +AACCTGACACACAGAG-1_16_57391685_G_A_- AACCTGACACACAGAG-1 16 57391685 G A - 1 1 G>A C>T +AAACCCAGTACGGGAT-1_17_39848018_C_T_+ AAACCCAGTACGGGAT-1 17 39848018 C T + 1 1 C>T C>T +AACCTTTAGGTGCATG-1_17_39848018_C_T_+ AACCTTTAGGTGCATG-1 17 39848018 C T + 1 1 C>T C>T +AAACCCACATATCTGG-1_5_90253579_G_A_- AAACCCACATATCTGG-1 5 90253579 G A - 1 1 G>A C>T +AAGAACAGTTCGGTTA-1_13_49484244_G_T_- AAGAACAGTTCGGTTA-1 13 49484244 G T - 1 1 G>T C>A +AACCCAAAGCGATCGA-1_6_134792402_C_A_- AACCCAAAGCGATCGA-1 6 134792402 C A - 1 1 C>A G>T +AAGACTCCAACACAGG-1_19_29715492_A_C_- AAGACTCCAACACAGG-1 19 29715492 A C - 1 1 A>C T>G +AAAGGGCCACTTCAAG-1_16_43393500_C_T_+ AAAGGGCCACTTCAAG-1 16 43393500 C T + 1 1 C>T C>T +AACCTTTTCTTTACAC-1_16_33056484_C_T_+ AACCTTTTCTTTACAC-1 16 33056484 C T + 1 1 C>T C>T +AACGTCATCTGGCTGG-1_14_76507761_A_G_+ AACGTCATCTGGCTGG-1 14 76507761 A G + 1 1 A>G A>G +AACGGGAAGTTACTCG-1_4_130705831_A_G_+ AACGGGAAGTTACTCG-1 4 130705831 A G + 1 1 A>G A>G +AAACCCACAATCTCTT-1_12_69159053_A_T_- AAACCCACAATCTCTT-1 12 69159053 A T - 1 1 A>T T>A +AACGGGAAGCAGCCCT-1_5_146261076_T_C_+ AACGGGAAGCAGCCCT-1 5 146261076 T C + 1 1 T>C T>C +AACCACAGTGTTCCTC-1_19_21392291_C_T_- AACCACAGTGTTCCTC-1 19 21392291 C T - 1 1 C>T G>A +AACGTCAAGCTAAACA-1_6_37919980_G_A_+ AACGTCAAGCTAAACA-1 6 37919980 G A + 1 1 G>A G>A +AAGAACAGTCGTTGCG-1_12_78843205_C_T_- AAGAACAGTCGTTGCG-1 12 78843205 C T - 1 1 C>T G>A +AAACGAAAGGTAGTCG-1_5_123921207_T_C_+ AAACGAAAGGTAGTCG-1 5 123921207 T C + 1 1 T>C T>C +AAATGGACACCCGTAG-1_5_146261122_A_G_+ AAATGGACACCCGTAG-1 5 146261122 A G + 1 1 A>G A>G +AAGACAAGTCGAATTC-1_15_34441308_G_A_- AAGACAAGTCGAATTC-1 15 34441308 G A - 1 1 G>A C>T +AACGTCATCTGGCTGG-1_3_90213206_G_A_- AACGTCATCTGGCTGG-1 3 90213206 G A - 1 1 G>A C>T +AAACGCTGTGGACAGT-1_2_158375844_C_A_+ AAACGCTGTGGACAGT-1 2 158375844 C A + 1 1 C>A C>A +AACTTCTTCTTCCCGA-1_2_148872017_G_A_- AACTTCTTCTTCCCGA-1 2 148872017 G A - 1 1 G>A C>T +AAATGGAAGCAGATAT-1_2_5379332_A_T_- AAATGGAAGCAGATAT-1 2 5379332 A T - 1 1 A>T T>A +AACAACCAGTAATACG-1_12_109561863_A_G_+ AACAACCAGTAATACG-1 12 109561863 A G + 1 1 A>G A>G +AAACGAAAGGTAGTCG-1_7_4794428_G_A_+ AAACGAAAGGTAGTCG-1 7 4794428 G A + 1 1 G>A G>A +AACAAGAAGTAAACTG-1_11_102887437_G_C_- AACAAGAAGTAAACTG-1 11 102887437 G C - 1 1 G>C C>G +AAGAACACATACTGTG-1_16_91694624_G_A_- AAGAACACATACTGTG-1 16 91694624 G A - 1 1 G>A C>T +AACCAACCAGTCGCTG-1_6_51589574_C_T_+ AACCAACCAGTCGCTG-1 6 51589574 C T + 1 1 C>T C>T +AACGAAATCCTGTAAG-1_2_28230154_G_A_+ AACGAAATCCTGTAAG-1 2 28230154 G A + 1 1 G>A G>A +AACGGGAAGCAGCCCT-1_9_3014101_G_C_- AACGGGAAGCAGCCCT-1 9 3014101 G C - 1 1 G>C C>G +AAAGGATCACGTAGTT-1_15_78428803_T_G_+ AAAGGATCACGTAGTT-1 15 78428803 T G + 1 1 T>G T>G +AAAGGGCTCTCACTCG-1_17_26505856_A_C_- AAAGGGCTCTCACTCG-1 17 26505856 A C - 1 1 A>C T>G +AACGTCATCTATACGG-1_1_84370564_G_A_- AACGTCATCTATACGG-1 1 84370564 G A - 1 1 G>A C>T +AAATGGAAGCAGATAT-1_4_123194702_C_A_+ AAATGGAAGCAGATAT-1 4 123194702 C A + 1 1 C>A C>A +AAGATAGCACGCGTGT-1_MT_3528_A_G_+ AAGATAGCACGCGTGT-1 MT 3528 A G + 1 3 A>G A>G +AACCAACCAGTCGCTG-1_18_75002705_C_T_+ AACCAACCAGTCGCTG-1 18 75002705 C T + 1 1 C>T C>T +AAGACTCGTTGCTCGG-1_11_120488454_A_G_+ AAGACTCGTTGCTCGG-1 11 120488454 A G + 1 1 A>G A>G +AACCACATCGGAGATG-1_4_76325205_G_T_- AACCACATCGGAGATG-1 4 76325205 G T - 1 1 G>T C>A +AACAACCGTACTCAAC-1_1_92439652_G_A_- AACAACCGTACTCAAC-1 1 92439652 G A - 1 1 G>A C>T +AAACGCTGTCAACACT-1_13_108048772_T_G_+ AAACGCTGTCAACACT-1 13 108048772 T G + 1 1 T>G T>G +AAACCCACACAAAGTA-1_4_86984044_G_A_- AAACCCACACAAAGTA-1 4 86984044 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_X_168654268_G_A_- AAACGCTCAGTAGGAC-1 X 168654268 G A - 1 1 G>A C>T +AAAGGGCGTTCCAAAC-1_16_41319658_A_G_+ AAAGGGCGTTCCAAAC-1 16 41319658 A G + 1 1 A>G A>G +AACCATGTCCTCTCGA-1_14_116145442_A_G_+ AACCATGTCCTCTCGA-1 14 116145442 A G + 1 1 A>G A>G +AACAGGGGTGCACATT-1_6_97211266_A_C_+ AACAGGGGTGCACATT-1 6 97211266 A C + 1 1 A>C A>C +AAACGAACAGAACTTC-1_9_121489981_A_G_- AAACGAACAGAACTTC-1 9 121489981 A G - 1 1 A>G T>C +AAAGTCCAGTCGGCCT-1_2_130279557_G_A_- AAAGTCCAGTCGGCCT-1 2 130279557 G A - 1 1 G>A C>T +AACGGGAGTAGCACGA-1_7_112905704_C_T_+ AACGGGAGTAGCACGA-1 7 112905704 C T + 1 1 C>T C>T +AACACACCAGACCAGA-1_X_136838188_A_G_+ AACACACCAGACCAGA-1 X 136838188 A G + 1 2 A>G A>G +AAGAACAAGGTCGAGT-1_16_57391685_G_A_- AAGAACAAGGTCGAGT-1 16 57391685 G A - 1 1 G>A C>T +AAAGGATAGATGAAGG-1_2_5293720_G_A_- AAAGGATAGATGAAGG-1 2 5293720 G A - 1 1 G>A C>T +AACAACCGTAGCCCTG-1_5_142903124_A_G_- AACAACCGTAGCCCTG-1 5 142903124 A G - 1 1 A>G T>C +AACCACAAGCTTTGTG-1_19_7425964_G_A_- AACCACAAGCTTTGTG-1 19 7425964 G A - 1 1 G>A C>T +AACAAAGCACGCAGTC-1_8_11312683_A_G_- AACAAAGCACGCAGTC-1 8 11312683 A G - 1 1 A>G T>C +AAGACTCGTTGCTCGG-1_1_135527171_G_T_- AAGACTCGTTGCTCGG-1 1 135527171 G T - 1 1 G>T C>A +AACACACCAGACCAGA-1_17_74529237_C_A_+ AACACACCAGACCAGA-1 17 74529237 C A + 1 1 C>A C>A +AACCACAAGCTTTGTG-1_2_91237913_T_C_+ AACCACAAGCTTTGTG-1 2 91237913 T C + 1 1 T>C T>C +AAGATAGCATGGGAAC-1_2_35182212_T_A_- AAGATAGCATGGGAAC-1 2 35182212 T A - 1 1 T>A A>T +AAACCCATCTTAAGGC-1_16_7411497_C_T_+ AAACCCATCTTAAGGC-1 16 7411497 C T + 1 1 C>T C>T +AAATGGAGTACCGGAA-1_12_76403608_G_A_- AAATGGAGTACCGGAA-1 12 76403608 G A - 1 1 G>A C>T +AAGAACAGTTGCAAGG-1_1_180165452_C_T_+ AAGAACAGTTGCAAGG-1 1 180165452 C T + 1 1 C>T C>T +AACGTCATCTGGCTGG-1_13_24907642_T_C_- AACGTCATCTGGCTGG-1 13 24907642 T C - 1 1 T>C A>G +AAACCCACATCTGGGC-1_17_39847458_A_G_+ AAACCCACATCTGGGC-1 17 39847458 A G + 1 1 A>G A>G +AAAGGTATCGCGTGAC-1_17_39848018_C_T_+ AAAGGTATCGCGTGAC-1 17 39848018 C T + 1 1 C>T C>T +AACCCAAGTTGAGAGC-1_4_56959178_G_A_- AACCCAAGTTGAGAGC-1 4 56959178 G A - 1 1 G>A C>T +AAAGTCCGTACGTACT-1_11_69914415_C_G_+ AAAGTCCGTACGTACT-1 11 69914415 C G + 1 1 C>G C>G +AAATGGAAGTTTCGGT-1_5_113086774_T_G_- AAATGGAAGTTTCGGT-1 5 113086774 T G - 1 1 T>G A>C +AACAAGAAGTAAACTG-1_15_82041421_C_T_- AACAAGAAGTAAACTG-1 15 82041421 C T - 1 1 C>T G>A +AACCTGATCGGATACT-1_12_100205631_T_A_+ AACCTGATCGGATACT-1 12 100205631 T A + 1 1 T>A T>A +AACCAACTCGATGGAG-1_4_132492117_A_C_- AACCAACTCGATGGAG-1 4 132492117 A C - 1 1 A>C T>G +AAGAACAGTCCTGGTG-1_13_74032250_C_T_+ AAGAACAGTCCTGGTG-1 13 74032250 C T + 1 1 C>T C>T +AACGTCAAGCGAGGAG-1_11_87583328_T_G_+ AACGTCAAGCGAGGAG-1 11 87583328 T G + 1 1 T>G T>G +AAAGTCCAGTCGGCCT-1_12_100209655_C_T_+ AAAGTCCAGTCGGCCT-1 12 100209655 C T + 1 1 C>T C>T +AAACGCTGTCATGGCC-1_1_75264031_C_T_- AAACGCTGTCATGGCC-1 1 75264031 C T - 1 1 C>T G>A +AACCAACTCAGTGGGA-1_4_102971992_C_T_+ AACCAACTCAGTGGGA-1 4 102971992 C T + 1 1 C>T C>T +AAAGAACGTAGCACGA-1_17_39847924_C_A_- AAAGAACGTAGCACGA-1 17 39847924 C A - 1 1 C>A G>T +AAAGGTAGTCGAATTC-1_17_39847686_G_A_- AAAGGTAGTCGAATTC-1 17 39847686 G A - 1 1 G>A C>T +AAACGAAGTGATGTAA-1_19_10517087_A_G_- AAACGAAGTGATGTAA-1 19 10517087 A G - 1 1 A>G T>C +AAATGGACACCCGTAG-1_7_29325824_C_A_- AAATGGACACCCGTAG-1 7 29325824 C A - 1 1 C>A G>T +AACCAACTCGATGGAG-1_19_5802224_T_C_- AACCAACTCGATGGAG-1 19 5802224 T C - 1 1 T>C A>G +AAGAACAGTAACAGGC-1_16_57391677_C_G_- AAGAACAGTAACAGGC-1 16 57391677 C G - 1 1 C>G G>C +AACCTGAAGCCTAACT-1_MT_10277_C_T_+ AACCTGAAGCCTAACT-1 MT 10277 C T + 1 1 C>T C>T +AACCATGAGGTGCATG-1_8_94674271_C_T_+ AACCATGAGGTGCATG-1 8 94674271 C T + 1 1 C>T C>T +AACTTCTAGAGACAAG-1_18_45685567_G_T_+ AACTTCTAGAGACAAG-1 18 45685567 G T + 1 1 G>T G>T +AACGTCAGTGGGTCAA-1_17_39847029_A_G_+ AACGTCAGTGGGTCAA-1 17 39847029 A G + 1 1 A>G A>G +AAACGAAGTGTTTACG-1_15_25363498_C_T_- AAACGAAGTGTTTACG-1 15 25363498 C T - 1 1 C>T G>A +AAATGGAAGCAGATAT-1_14_8223566_T_A_+ AAATGGAAGCAGATAT-1 14 8223566 T A + 1 1 T>A T>A +AAAGGATCATTCATCT-1_7_44900425_C_A_- AAAGGATCATTCATCT-1 7 44900425 C A - 1 1 C>A G>T +AACTTCTCACTAACGT-1_7_141191285_A_G_- AACTTCTCACTAACGT-1 7 141191285 A G - 1 1 A>G T>C +AAAGTCCAGTATAACG-1_10_37138548_A_T_- AAAGTCCAGTATAACG-1 10 37138548 A T - 1 1 A>T T>A +AACAAGAAGAGAGCAA-1_16_42956075_T_A_+ AACAAGAAGAGAGCAA-1 16 42956075 T A + 1 1 T>A T>A +AAACGCTCAGTAGGAC-1_14_26656769_C_T_+ AAACGCTCAGTAGGAC-1 14 26656769 C T + 1 1 C>T C>T +AACGGGACAGTTGTTG-1_19_5799225_C_T_- AACGGGACAGTTGTTG-1 19 5799225 C T - 1 1 C>T G>A +AACCTTTCACACCTGG-1_6_115173518_A_T_+ AACCTTTCACACCTGG-1 6 115173518 A T + 1 1 A>T A>T +AACTTCTCATGAATAG-1_7_98717305_A_T_+ AACTTCTCATGAATAG-1 7 98717305 A T + 1 1 A>T A>T +AAAGTCCCAAACGGCA-1_13_94187192_G_A_+ AAAGTCCCAAACGGCA-1 13 94187192 G A + 1 1 G>A G>A +AAGACTCGTGGTACAG-1_9_37544795_G_A_- AAGACTCGTGGTACAG-1 9 37544795 G A - 1 1 G>A C>T +AACTTCTCAGGACTTT-1_19_5802172_C_A_- AACTTCTCAGGACTTT-1 19 5802172 C A - 1 2 C>A G>T +AACGTCACACGCTGAC-1_19_5801948_C_G_- AACGTCACACGCTGAC-1 19 5801948 C G - 1 1 C>G G>C +AACGGGATCCTGCCAT-1_2_181306581_T_C_- AACGGGATCCTGCCAT-1 2 181306581 T C - 1 1 T>C A>G +AACGTCACACTCCTTG-1_11_106066841_G_C_+ AACGTCACACTCCTTG-1 11 106066841 G C + 1 1 G>C G>C +AACCACACAGAGAAAG-1_17_39848018_C_T_+ AACCACACAGAGAAAG-1 17 39848018 C T + 1 1 C>T C>T +AAACGAAGTACTGCCG-1_13_34977907_G_A_- AAACGAAGTACTGCCG-1 13 34977907 G A - 1 1 G>A C>T +AACGTCAAGGAATTAC-1_2_30345010_G_A_- AACGTCAAGGAATTAC-1 2 30345010 G A - 1 1 G>A C>T +AAACCCACAGAGGAAA-1_17_70963742_A_C_+ AAACCCACAGAGGAAA-1 17 70963742 A C + 1 1 A>C A>C +AAATGGACAAGCGCAA-1_2_67616582_G_A_+ AAATGGACAAGCGCAA-1 2 67616582 G A + 1 1 G>A G>A +AAGATAGAGGGTACGT-1_9_3025559_A_T_- AAGATAGAGGGTACGT-1 9 3025559 A T - 1 1 A>T T>A +AAAGAACTCGTGGGAA-1_9_123461940_T_G_+ AAAGAACTCGTGGGAA-1 9 123461940 T G + 1 1 T>G T>G +AAACCCATCCTACTGC-1_17_39847095_C_T_+ AAACCCATCCTACTGC-1 17 39847095 C T + 1 1 C>T C>T +AACTTCTAGAACAGGA-1_7_4134749_A_C_+ AACTTCTAGAACAGGA-1 7 4134749 A C + 1 1 A>C A>C +AACGTCACAAGAATGT-1_7_123193745_T_A_+ AACGTCACAAGAATGT-1 7 123193745 T A + 1 1 T>A T>A +AAGACTCAGAAGCTCG-1_10_32526867_T_C_- AAGACTCAGAAGCTCG-1 10 32526867 T C - 1 1 T>C A>G +AACGGGATCCTGCCAT-1_17_39848018_C_T_+ AACGGGATCCTGCCAT-1 17 39848018 C T + 1 1 C>T C>T +AAATGGACAAGCGCAA-1_X_20897675_A_G_- AAATGGACAAGCGCAA-1 X 20897675 A G - 1 1 A>G T>C +AAAGGATCATTCAGGT-1_6_49258843_A_C_- AAAGGATCATTCAGGT-1 6 49258843 A C - 1 1 A>C T>G +AACCCAAGTATCGATC-1_16_17004388_T_C_+ AACCCAAGTATCGATC-1 16 17004388 T C + 1 1 T>C T>C +AAACCCATCTTAAGGC-1_9_3024446_T_C_- AAACCCATCTTAAGGC-1 9 3024446 T C - 1 1 T>C A>G +AACCTGAAGTCCCAGC-1_10_60302415_C_T_+ AACCTGAAGTCCCAGC-1 10 60302415 C T + 1 1 C>T C>T +AACAAAGGTAGGGTAC-1_18_12137028_C_T_+ AACAAAGGTAGGGTAC-1 18 12137028 C T + 1 1 C>T C>T +AACCAACCACGGTAGA-1_17_39847435_A_G_+ AACCAACCACGGTAGA-1 17 39847435 A G + 1 1 A>G A>G +AACCTGACACACAGAG-1_16_57391683_T_A_- AACCTGACACACAGAG-1 16 57391683 T A - 1 1 T>A A>T +AACCACAAGCTTTGTG-1_11_75765537_C_T_+ AACCACAAGCTTTGTG-1 11 75765537 C T + 1 1 C>T C>T +AACCAACAGCTAAATG-1_5_148871694_T_A_- AACCAACAGCTAAATG-1 5 148871694 T A - 1 1 T>A A>T +AAAGGTACAGACACCC-1_9_66382758_C_T_+ AAAGGTACAGACACCC-1 9 66382758 C T + 1 1 C>T C>T +AAATGGAGTTACACAC-1_5_146261080_C_A_+ AAATGGAGTTACACAC-1 5 146261080 C A + 1 1 C>A C>A +AAAGTGAGTTCTGACA-1_6_106698988_C_T_+ AAAGTGAGTTCTGACA-1 6 106698988 C T + 1 1 C>T C>T +AACGTCACATAGATGA-1_1_192073754_T_C_- AACGTCACATAGATGA-1 1 192073754 T C - 1 1 T>C A>G +AACACACGTGTTGCCG-1_1_30865799_A_C_- AACACACGTGTTGCCG-1 1 30865799 A C - 1 1 A>C T>G +AAACCCATCCACACAA-1_X_136837257_T_A_+ AAACCCATCCACACAA-1 X 136837257 T A + 1 1 T>A T>A +AACTTCTGTGCATGTT-1_16_57391680_C_T_- AACTTCTGTGCATGTT-1 16 57391680 C T - 1 1 C>T G>A +AACCATGGTGAGTTTC-1_9_113910859_G_T_+ AACCATGGTGAGTTTC-1 9 113910859 G T + 1 1 G>T G>T +AAACCCAGTGCTCGTG-1_5_150729793_T_A_+ AAACCCAGTGCTCGTG-1 5 150729793 T A + 1 1 T>A T>A +AAACGAAAGGTAGTCG-1_2_177010875_T_C_+ AAACGAAAGGTAGTCG-1 2 177010875 T C + 1 1 T>C T>C +AAACCCATCGTACACA-1_13_97252774_A_G_+ AAACCCATCGTACACA-1 13 97252774 A G + 1 1 A>G A>G +AAACCCACATCTGGGC-1_17_39847426_T_C_+ AAACCCACATCTGGGC-1 17 39847426 T C + 1 1 T>C T>C +AAAGGATAGTTCCGGC-1_15_89155558_A_G_- AAAGGATAGTTCCGGC-1 15 89155558 A G - 1 1 A>G T>C +AACCAACCACGGTAGA-1_9_40291563_C_T_+ AACCAACCACGGTAGA-1 9 40291563 C T + 1 1 C>T C>T +AACCTTTTCCGTGTGG-1_4_152330104_C_T_+ AACCTTTTCCGTGTGG-1 4 152330104 C T + 1 1 C>T C>T +AAGATAGGTCATCAGT-1_9_102634070_A_T_+ AAGATAGGTCATCAGT-1 9 102634070 A T + 1 1 A>T A>T +AACAACCGTATGTCTG-1_14_18811885_C_A_- AACAACCGTATGTCTG-1 14 18811885 C A - 1 1 C>A G>T +AACAAGAGTTACCTGA-1_9_3014321_T_A_- AACAAGAGTTACCTGA-1 9 3014321 T A - 1 1 T>A A>T +AAGACAAAGGGCAGGA-1_19_5802230_A_G_- AAGACAAAGGGCAGGA-1 19 5802230 A G - 1 2 A>G T>C +AACGTCATCCAATGCA-1_11_66211936_A_G_- AACGTCATCCAATGCA-1 11 66211936 A G - 1 1 A>G T>C +AAACGAAGTCATCACA-1_17_39848018_C_T_+ AAACGAAGTCATCACA-1 17 39848018 C T + 1 1 C>T C>T +AACAAAGTCGGAGATG-1_9_121489895_C_T_- AACAAAGTCGGAGATG-1 9 121489895 C T - 1 1 C>T G>A +AACGGGAGTGGTTCTA-1_13_44869614_A_G_+ AACGGGAGTGGTTCTA-1 13 44869614 A G + 1 1 A>G A>G +AAAGTGATCGTCGGGT-1_16_18300937_T_C_- AAAGTGATCGTCGGGT-1 16 18300937 T C - 1 1 T>C A>G +AACCTGACATCGTCCT-1_17_57003477_G_A_- AACCTGACATCGTCCT-1 17 57003477 G A - 1 1 G>A C>T +AAACGAAGTTCATCTT-1_3_57497306_T_C_- AAACGAAGTTCATCTT-1 3 57497306 T C - 1 1 T>C A>G +AACCTGACAAGTGACG-1_17_39846997_C_T_+ AACCTGACAAGTGACG-1 17 39846997 C T + 1 2 C>T C>T +AACGAAAGTGCGGTAA-1_11_113124907_T_G_- AACGAAAGTGCGGTAA-1 11 113124907 T G - 1 1 T>G A>C +AAGAACATCAGCCTTC-1_14_75848172_C_T_+ AAGAACATCAGCCTTC-1 14 75848172 C T + 1 2 C>T C>T +AAAGGGCCAGCGACCT-1_11_87124457_C_T_+ AAAGGGCCAGCGACCT-1 11 87124457 C T + 1 1 C>T C>T +AAGACTCAGAGGGTCT-1_17_39847367_A_T_- AAGACTCAGAGGGTCT-1 17 39847367 A T - 1 1 A>T T>A +AACGTCACATGAATCC-1_4_6395515_C_A_+ AACGTCACATGAATCC-1 4 6395515 C A + 1 1 C>A C>A +AAGATAGAGGCCACTC-1_7_103826687_G_A_- AAGATAGAGGCCACTC-1 7 103826687 G A - 1 29 G>A C>T +AAACCCATCGGATAAA-1_17_39843842_T_C_+ AAACCCATCGGATAAA-1 17 39843842 T C + 1 1 T>C T>C +AACTTCTTCTTCCCGA-1_9_3014248_T_C_- AACTTCTTCTTCCCGA-1 9 3014248 T C - 1 1 T>C A>G +AAGAACAGTTCGGTTA-1_16_3750706_A_T_+ AAGAACAGTTCGGTTA-1 16 3750706 A T + 1 1 A>T A>T +AACCTGACACACAGAG-1_17_39847403_T_G_+ AACCTGACACACAGAG-1 17 39847403 T G + 1 1 T>G T>G +AAGATAGAGGCCACTC-1_7_103812649_A_G_- AAGATAGAGGCCACTC-1 7 103812649 A G - 1 5 A>G T>C +AAGATAGGTACGCGTC-1_7_28778437_C_A_+ AAGATAGGTACGCGTC-1 7 28778437 C A + 1 1 C>A C>A +AACTTCTAGCAGATAT-1_9_49502255_T_A_- AACTTCTAGCAGATAT-1 9 49502255 T A - 1 1 T>A A>T +AACACACGTGTTGCCG-1_11_120345901_G_A_- AACACACGTGTTGCCG-1 11 120345901 G A - 1 1 G>A C>T +AAGATAGCAATAACGA-1_16_84828501_C_T_- AAGATAGCAATAACGA-1 16 84828501 C T - 1 1 C>T G>A +AAAGTCCTCCTACAAG-1_4_155616778_A_T_- AAAGTCCTCCTACAAG-1 4 155616778 A T - 1 1 A>T T>A +AACAAAGAGCCGATTT-1_4_129592280_G_A_- AACAAAGAGCCGATTT-1 4 129592280 G A - 1 1 G>A C>T +AAATGGAAGTTCAACC-1_17_39848018_C_T_+ AAATGGAAGTTCAACC-1 17 39848018 C T + 1 1 C>T C>T +AACAACCGTCATCGGC-1_11_6419653_T_A_+ AACAACCGTCATCGGC-1 11 6419653 T A + 1 1 T>A T>A +AACGTCACATAGATGA-1_3_55850522_T_C_- AACGTCACATAGATGA-1 3 55850522 T C - 1 1 T>C A>G +AAAGGGCCAACTAGAA-1_10_56228632_T_G_- AAAGGGCCAACTAGAA-1 10 56228632 T G - 1 1 T>G A>C +AAATGGAGTATTGGCT-1_17_39847458_A_G_- AAATGGAGTATTGGCT-1 17 39847458 A G - 1 1 A>G T>C +AAGACAAAGGGCAGGA-1_2_98666964_A_T_- AAGACAAAGGGCAGGA-1 2 98666964 A T - 1 1 A>T T>A +AACCTGAAGTCCCAGC-1_3_106574677_C_T_+ AACCTGAAGTCCCAGC-1 3 106574677 C T + 1 1 C>T C>T +AACGTCACACTCCTTG-1_17_39847403_T_G_+ AACGTCACACTCCTTG-1 17 39847403 T G + 1 1 T>G T>G +AACCATGAGTTCCGTA-1_14_93634214_T_C_- AACCATGAGTTCCGTA-1 14 93634214 T C - 1 1 T>C A>G +AAGAACACAAAGGTTA-1_9_70554624_T_G_+ AAGAACACAAAGGTTA-1 9 70554624 T G + 1 1 T>G T>G +AACCTTTTCAGTCAGT-1_9_3018545_G_A_- AACCTTTTCAGTCAGT-1 9 3018545 G A - 1 1 G>A C>T +AACAGGGCAAACTCGT-1_3_108320407_C_T_+ AACAGGGCAAACTCGT-1 3 108320407 C T + 1 1 C>T C>T +AACAAGACATGGCTGC-1_9_3000537_T_A_- AACAAGACATGGCTGC-1 9 3000537 T A - 1 1 T>A A>T +AACGTCATCGTGGCGT-1_17_39847196_A_G_- AACGTCATCGTGGCGT-1 17 39847196 A G - 1 1 A>G T>C +AACAACCCATTCGGGC-1_4_129672715_C_T_- AACAACCCATTCGGGC-1 4 129672715 C T - 1 1 C>T G>A +AACCAACGTGATACAA-1_12_105804964_A_C_+ AACCAACGTGATACAA-1 12 105804964 A C + 1 1 A>C A>C +AAAGGGCTCTGCTAGA-1_11_22974581_C_A_+ AAAGGGCTCTGCTAGA-1 11 22974581 C A + 1 1 C>A C>A +AAACCCACAGCAGTCC-1_2_148871992_A_T_- AAACCCACAGCAGTCC-1 2 148871992 A T - 1 1 A>T T>A +AAAGGGCTCTCACTCG-1_13_43265587_T_C_- AAAGGGCTCTCACTCG-1 13 43265587 T C - 1 1 T>C A>G +AACGTCAAGCTGAAGC-1_5_146261106_C_G_+ AACGTCAAGCTGAAGC-1 5 146261106 C G + 1 1 C>G C>G +AAGACAAGTACTGACT-1_11_30099565_T_G_- AAGACAAGTACTGACT-1 11 30099565 T G - 1 1 T>G A>C +AAACGAAAGACAACAT-1_X_136837403_T_A_+ AAACGAAAGACAACAT-1 X 136837403 T A + 1 1 T>A T>A +AACGTCACAAGAATGT-1_9_50344230_A_T_- AACGTCACAAGAATGT-1 9 50344230 A T - 1 1 A>T T>A +AACTTCTTCTTCACGC-1_1_161970941_T_G_+ AACTTCTTCTTCACGC-1 1 161970941 T G + 1 1 T>G T>G +AAAGAACCACTCCGAG-1_19_5802612_C_A_- AAAGAACCACTCCGAG-1 19 5802612 C A - 1 2 C>A G>T +AAACGAAAGGCTTTCA-1_9_106644716_T_C_- AAACGAAAGGCTTTCA-1 9 106644716 T C - 1 1 T>C A>G +AAACGAAGTGATGTAA-1_7_16915588_A_T_- AAACGAAGTGATGTAA-1 7 16915588 A T - 1 1 A>T T>A +AACGTCATCTACTTCA-1_9_3027189_G_A_- AACGTCATCTACTTCA-1 9 3027189 G A - 1 1 G>A C>T +AACGAAAAGTGATAAC-1_11_51600992_A_T_- AACGAAAAGTGATAAC-1 11 51600992 A T - 1 1 A>T T>A +AACAGGGCAAACTCGT-1_X_136838236_T_A_+ AACAGGGCAAACTCGT-1 X 136838236 T A + 1 3 T>A T>A +AACCACAGTTTGATCG-1_1_86350522_G_A_- AACCACAGTTTGATCG-1 1 86350522 G A - 1 1 G>A C>T +AAGACTCGTGGTACAG-1_3_40790277_C_T_+ AAGACTCGTGGTACAG-1 3 40790277 C T + 1 1 C>T C>T +AAGACTCGTGGTACAG-1_17_66494756_G_A_- AAGACTCGTGGTACAG-1 17 66494756 G A - 1 1 G>A C>T +AACGGGACAGTTGTTG-1_14_61015366_A_G_- AACGGGACAGTTGTTG-1 14 61015366 A G - 1 1 A>G T>C +AAAGGATGTACCATAC-1_1_93015633_G_A_- AAAGGATGTACCATAC-1 1 93015633 G A - 1 1 G>A C>T +AACGAAAGTCCTGTCT-1_15_65873713_A_T_+ AACGAAAGTCCTGTCT-1 15 65873713 A T + 1 1 A>T A>T +AAGAACATCTCCGAAA-1_11_72639268_C_T_+ AAGAACATCTCCGAAA-1 11 72639268 C T + 1 1 C>T C>T +AAAGGGCGTCCTATAG-1_8_86716426_C_T_+ AAAGGGCGTCCTATAG-1 8 86716426 C T + 1 1 C>T C>T +AAGATAGCAATAACGA-1_19_5802631_G_C_- AAGATAGCAATAACGA-1 19 5802631 G C - 1 4 G>C C>G +AAAGTCCAGTATAACG-1_2_5379332_A_T_- AAAGTCCAGTATAACG-1 2 5379332 A T - 1 1 A>T T>A +AAAGAACCAACTTCTT-1_2_144142599_T_C_- AAAGAACCAACTTCTT-1 2 144142599 T C - 1 1 T>C A>G +AACCACAGTGTTCCTC-1_9_67022609_G_A_- AACCACAGTGTTCCTC-1 9 67022609 G A - 1 1 G>A C>T +AAACCCACAGCAGTCC-1_6_125460502_C_A_- AAACCCACAGCAGTCC-1 6 125460502 C A - 1 1 C>A G>T +AACGGGAGTCCAGGTC-1_7_110056009_G_A_+ AACGGGAGTCCAGGTC-1 7 110056009 G A + 1 1 G>A G>A +AACCTGATCTTCCACG-1_9_73013562_A_G_+ AACCTGATCTTCCACG-1 9 73013562 A G + 1 1 A>G A>G +AAATGGAGTAGCGCCT-1_13_44869614_A_G_+ AAATGGAGTAGCGCCT-1 13 44869614 A G + 1 1 A>G A>G +AACTTCTCAGGACTTT-1_17_78978603_T_G_- AACTTCTCAGGACTTT-1 17 78978603 T G - 1 1 T>G A>C +AAACCCACAGCTGTGC-1_11_90278465_C_T_+ AAACCCACAGCTGTGC-1 11 90278465 C T + 1 1 C>T C>T +AACAACCAGTTACTCG-1_7_45703753_A_C_+ AACAACCAGTTACTCG-1 7 45703753 A C + 1 1 A>C A>C +AAGAACAGTAAGATAC-1_16_4707567_G_A_+ AAGAACAGTAAGATAC-1 16 4707567 G A + 1 1 G>A G>A +AAGAACATCTCCGAAA-1_3_102756023_G_C_+ AAGAACATCTCCGAAA-1 3 102756023 G C + 1 1 G>C G>C +AACCCAAAGAATTGTG-1_12_29732465_A_C_+ AACCCAAAGAATTGTG-1 12 29732465 A C + 1 1 A>C A>C +AACTTCTAGACGCAGT-1_14_75762199_T_C_- AACTTCTAGACGCAGT-1 14 75762199 T C - 1 1 T>C A>G +AACGAAAAGCCGAACA-1_17_39847742_A_T_- AACGAAAAGCCGAACA-1 17 39847742 A T - 1 1 A>T T>A +AAGACTCGTCAAGTTC-1_4_155559121_C_T_+ AAGACTCGTCAAGTTC-1 4 155559121 C T + 1 1 C>T C>T +AACAAGACATCCGTTC-1_14_116111725_A_G_+ AACAAGACATCCGTTC-1 14 116111725 A G + 1 1 A>G A>G +AACCACATCCTAGCTC-1_X_20615529_C_G_- AACCACATCCTAGCTC-1 X 20615529 C G - 1 1 C>G G>C +AACGGGAAGTTGCCCG-1_1_75482914_T_C_+ AACGGGAAGTTGCCCG-1 1 75482914 T C + 1 1 T>C T>C +AAAGGATAGCGTTGTT-1_X_7922944_G_C_+ AAAGGATAGCGTTGTT-1 X 7922944 G C + 1 1 G>C G>C +AAAGTGACAAATACAG-1_17_39847607_T_C_+ AAAGTGACAAATACAG-1 17 39847607 T C + 1 1 T>C T>C +AAGACTCGTGGTACAG-1_5_112378186_G_A_+ AAGACTCGTGGTACAG-1 5 112378186 G A + 1 1 G>A G>A +AACAACCCATTCGGGC-1_2_98662910_A_T_+ AACAACCCATTCGGGC-1 2 98662910 A T + 1 1 A>T A>T +AACCTGACATCGTCCT-1_17_39848018_C_T_+ AACCTGACATCGTCCT-1 17 39848018 C T + 1 1 C>T C>T +AAATGGACACCCGTAG-1_7_100814048_T_C_+ AAATGGACACCCGTAG-1 7 100814048 T C + 1 1 T>C T>C +AACCAACAGCTACTGT-1_17_39848018_C_T_+ AACCAACAGCTACTGT-1 17 39848018 C T + 1 1 C>T C>T +AACCTGACAAACCACT-1_14_54894262_G_A_+ AACCTGACAAACCACT-1 14 54894262 G A + 1 1 G>A G>A +AACGTCAGTAGTCTGT-1_17_70974327_G_A_- AACGTCAGTAGTCTGT-1 17 70974327 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_18_75002769_T_C_+ AAACGCTCAGTAGGAC-1 18 75002769 T C + 1 1 T>C T>C +AACTTCTAGCAGATAT-1_7_127491302_G_A_+ AACTTCTAGCAGATAT-1 7 127491302 G A + 1 1 G>A G>A +AAGAACAGTCTAATCG-1_4_147456872_G_C_+ AAGAACAGTCTAATCG-1 4 147456872 G C + 1 1 G>C G>C +AAACGCTAGGTTACAA-1_5_92054710_C_A_- AAACGCTAGGTTACAA-1 5 92054710 C A - 1 1 C>A G>T +AACCAACCACGGTAGA-1_18_78900866_C_T_- AACCAACCACGGTAGA-1 18 78900866 C T - 1 1 C>T G>A +AACACACTCGAGGCAA-1_13_70588949_A_C_- AACACACTCGAGGCAA-1 13 70588949 A C - 1 1 A>C T>G +AAAGGTACACTACACA-1_5_122405977_C_T_+ AAAGGTACACTACACA-1 5 122405977 C T + 1 1 C>T C>T +AAAGGTAGTATGTGTC-1_3_125865640_A_C_- AAAGGTAGTATGTGTC-1 3 125865640 A C - 1 1 A>C T>G +AACCCAATCTTGCAAG-1_3_25907154_T_C_- AACCCAATCTTGCAAG-1 3 25907154 T C - 1 1 T>C A>G +AAACGAAGTGTAACGG-1_16_57391454_T_C_- AAACGAAGTGTAACGG-1 16 57391454 T C - 1 1 T>C A>G +AAAGGTATCTCTGACC-1_3_90391463_A_T_- AAAGGTATCTCTGACC-1 3 90391463 A T - 1 1 A>T T>A +AAAGGGCTCTCACTCG-1_4_123512838_G_A_- AAAGGGCTCTCACTCG-1 4 123512838 G A - 1 1 G>A C>T +AACACACTCTCGCCTA-1_2_5379332_A_T_- AACACACTCTCGCCTA-1 2 5379332 A T - 1 1 A>T T>A +AAATGGAGTACCGGAA-1_11_100581610_A_G_+ AAATGGAGTACCGGAA-1 11 100581610 A G + 1 1 A>G A>G +AACAGGGAGGTGCTGA-1_10_108831119_T_G_- AACAGGGAGGTGCTGA-1 10 108831119 T G - 1 1 T>G A>C +AACGAAACAGGAATAT-1_17_39847607_T_C_- AACGAAACAGGAATAT-1 17 39847607 T C - 1 1 T>C A>G +AAGACTCCAAGTATCC-1_17_39848018_C_T_+ AAGACTCCAAGTATCC-1 17 39848018 C T + 1 1 C>T C>T +AACCCAAGTATCGATC-1_17_87433548_T_G_- AACCCAAGTATCGATC-1 17 87433548 T G - 1 1 T>G A>C +AACCATGCAGAGTTCT-1_16_57391677_C_G_- AACCATGCAGAGTTCT-1 16 57391677 C G - 1 1 C>G G>C +AAACGAAGTTCATCTT-1_15_89529582_A_G_+ AAACGAAGTTCATCTT-1 15 89529582 A G + 1 1 A>G A>G +AACCAACGTGCCTAAT-1_7_118722774_C_T_+ AACCAACGTGCCTAAT-1 7 118722774 C T + 1 1 C>T C>T +AAAGGATCAAATGGCG-1_10_3967123_T_G_+ AAAGGATCAAATGGCG-1 10 3967123 T G + 1 1 T>G T>G +AAACGCTCAGTAGGAC-1_7_28399668_G_T_- AAACGCTCAGTAGGAC-1 7 28399668 G T - 1 1 G>T C>A +AAAGGATAGTTCCGGC-1_9_3000527_T_C_- AAAGGATAGTTCCGGC-1 9 3000527 T C - 1 1 T>C A>G +AACGTCAGTAGTCTGT-1_17_70974245_G_A_- AACGTCAGTAGTCTGT-1 17 70974245 G A - 1 1 G>A C>T +AAGAACACACTAGGTT-1_14_46775898_G_A_- AAGAACACACTAGGTT-1 14 46775898 G A - 1 1 G>A C>T +AACAGGGGTCGTGATT-1_2_98662246_T_G_+ AACAGGGGTCGTGATT-1 2 98662246 T G + 1 1 T>G T>G +AAATGGACATCCGGCA-1_14_23605773_T_C_- AAATGGACATCCGGCA-1 14 23605773 T C - 1 1 T>C A>G +AACGAAATCGATCCCT-1_17_39847148_G_A_+ AACGAAATCGATCCCT-1 17 39847148 G A + 1 2 G>A G>A +AAAGGATAGAAACCAT-1_9_62791947_G_A_- AAAGGATAGAAACCAT-1 9 62791947 G A - 1 1 G>A C>T +AAGAACATCGAACCTA-1_17_39847426_T_C_- AAGAACATCGAACCTA-1 17 39847426 T C - 1 1 T>C A>G +AAAGGTATCCGGTAGC-1_17_32830006_G_A_- AAAGGTATCCGGTAGC-1 17 32830006 G A - 1 1 G>A C>T +AACAACCCACACACGC-1_13_78139071_G_T_+ AACAACCCACACACGC-1 13 78139071 G T + 1 1 G>T G>T +AAATGGACACCCGTAG-1_7_29325827_G_A_- AAATGGACACCCGTAG-1 7 29325827 G A - 1 1 G>A C>T +AAGACTCGTCCACATA-1_5_146261076_T_C_+ AAGACTCGTCCACATA-1 5 146261076 T C + 1 1 T>C T>C +AACAACCGTATGTCTG-1_3_158119295_A_G_- AACAACCGTATGTCTG-1 3 158119295 A G - 1 1 A>G T>C +AACGTCAGTAGTCTGT-1_17_70974261_G_A_- AACGTCAGTAGTCTGT-1 17 70974261 G A - 1 1 G>A C>T +AAAGAACTCTCACCCA-1_1_82253058_A_T_- AAAGAACTCTCACCCA-1 1 82253058 A T - 1 1 A>T T>A +AACCTTTAGACCATAA-1_5_112562297_C_T_- AACCTTTAGACCATAA-1 5 112562297 C T - 1 1 C>T G>A +AACAACCGTCTCAGAT-1_3_136935351_G_T_+ AACAACCGTCTCAGAT-1 3 136935351 G T + 1 1 G>T G>T +AACTTCTAGGGATCTG-1_19_5107980_C_G_- AACTTCTAGGGATCTG-1 19 5107980 C G - 1 1 C>G G>C +AACCACAGTCCAGAAG-1_16_57391454_T_C_- AACCACAGTCCAGAAG-1 16 57391454 T C - 1 1 T>C A>G +AAAGTCCGTGACTGTT-1_11_101735869_G_A_+ AAAGTCCGTGACTGTT-1 11 101735869 G A + 1 1 G>A G>A +AAAGGGCCACCAGTTA-1_17_39846349_C_T_+ AAAGGGCCACCAGTTA-1 17 39846349 C T + 1 1 C>T C>T +AACGAAACACCGTGGT-1_19_4035914_G_A_- AACGAAACACCGTGGT-1 19 4035914 G A - 1 1 G>A C>T +AAAGAACGTCGAGATG-1_17_39848018_C_T_+ AAAGAACGTCGAGATG-1 17 39848018 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_8_111952859_C_T_+ AACCACAAGCTTTGTG-1 8 111952859 C T + 1 1 C>T C>T +AAAGTCCTCTGCGATA-1_10_80404208_G_C_- AAAGTCCTCTGCGATA-1 10 80404208 G C - 1 1 G>C C>G +AACTTCTCACACGTGC-1_16_84954722_G_A_- AACTTCTCACACGTGC-1 16 84954722 G A - 1 1 G>A C>T +AAAGGTACACCGTGCA-1_4_86994331_A_T_- AAAGGTACACCGTGCA-1 4 86994331 A T - 1 1 A>T T>A +AAAGAACCAAATTAGG-1_X_44786898_G_A_- AAAGAACCAAATTAGG-1 X 44786898 G A - 1 1 G>A C>T +AACAAGAAGCAATTAG-1_4_135501446_A_C_+ AACAAGAAGCAATTAG-1 4 135501446 A C + 1 1 A>C A>C +AACAAAGTCACGATAC-1_10_17900391_G_A_- AACAAAGTCACGATAC-1 10 17900391 G A - 1 1 G>A C>T +AACTTCTCAGGACTTT-1_7_37712928_T_G_- AACTTCTCAGGACTTT-1 7 37712928 T G - 1 1 T>G A>C +AAACGAAAGCGAACTG-1_16_49914829_C_T_+ AAACGAAAGCGAACTG-1 16 49914829 C T + 1 1 C>T C>T +AAACGCTCAGGTCAGA-1_16_57391454_T_C_- AAACGCTCAGGTCAGA-1 16 57391454 T C - 1 1 T>C A>G +AAAGAACTCAATCAGC-1_3_97176486_G_A_+ AAAGAACTCAATCAGC-1 3 97176486 G A + 1 1 G>A G>A +AAACGCTCAGTAGGAC-1_8_13940396_C_T_+ AAACGCTCAGTAGGAC-1 8 13940396 C T + 1 1 C>T C>T +AACTTCTAGCTCAGAG-1_17_39848018_C_T_+ AACTTCTAGCTCAGAG-1 17 39848018 C T + 1 1 C>T C>T +AAAGGGCAGGCATGCA-1_8_95868003_C_T_- AAAGGGCAGGCATGCA-1 8 95868003 C T - 1 1 C>T G>A +AACCTGAAGTCCCAGC-1_6_29200653_C_G_- AACCTGAAGTCCCAGC-1 6 29200653 C G - 1 1 C>G G>C +AAAGAACAGCCTGAAG-1_3_136937530_C_T_+ AAAGAACAGCCTGAAG-1 3 136937530 C T + 1 1 C>T C>T +AAGACTCTCGAGTACT-1_2_167298733_G_A_- AAGACTCTCGAGTACT-1 2 167298733 G A - 1 1 G>A C>T +AAAGGATCATTCAGGT-1_19_5802099_C_A_- AAAGGATCATTCAGGT-1 19 5802099 C A - 1 2 C>A G>T +AAGACTCGTGGTACAG-1_3_158530812_A_T_- AAGACTCGTGGTACAG-1 3 158530812 A T - 1 1 A>T T>A +AACCTTTTCTTTCGAT-1_8_69901616_T_G_- AACCTTTTCTTTCGAT-1 8 69901616 T G - 1 1 T>G A>C +AAACCCATCGGATAAA-1_7_105558610_G_T_- AAACCCATCGGATAAA-1 7 105558610 G T - 1 1 G>T C>A +AACCCAAAGTTCTACG-1_17_39848153_T_C_+ AACCCAAAGTTCTACG-1 17 39848153 T C + 1 1 T>C T>C +AACAAGAAGCAATTAG-1_3_103057448_C_A_+ AACAAGAAGCAATTAG-1 3 103057448 C A + 1 1 C>A C>A +AAGACAATCGCGTCGA-1_9_110551025_C_T_+ AAGACAATCGCGTCGA-1 9 110551025 C T + 1 1 C>T C>T +AAAGGTATCGATTGAC-1_9_3002594_T_C_- AAAGGTATCGATTGAC-1 9 3002594 T C - 1 1 T>C A>G +AAACCCACAATCTCTT-1_15_75564775_G_A_- AAACCCACAATCTCTT-1 15 75564775 G A - 1 1 G>A C>T +AACGTCACACTCCTTG-1_2_102449373_C_T_- AACGTCACACTCCTTG-1 2 102449373 C T - 1 1 C>T G>A +AACCTGACAATAGTAG-1_10_60666628_G_C_- AACCTGACAATAGTAG-1 10 60666628 G C - 1 1 G>C C>G +AAACCCAGTGGTAATA-1_11_62552898_C_T_+ AAACCCAGTGGTAATA-1 11 62552898 C T + 1 1 C>T C>T +AAGACTCTCGAGTACT-1_6_120795366_G_A_- AAGACTCTCGAGTACT-1 6 120795366 G A - 1 1 G>A C>T +AACCAACCAGTCGCTG-1_5_76999762_C_T_+ AACCAACCAGTCGCTG-1 5 76999762 C T + 1 1 C>T C>T +AACTTCTCACACGTGC-1_1_162094956_G_A_- AACTTCTCACACGTGC-1 1 162094956 G A - 1 1 G>A C>T +AACTTCTCAGCGGATA-1_4_49753602_C_A_- AACTTCTCAGCGGATA-1 4 49753602 C A - 1 1 C>A G>T +AAAGAACTCCCAGGCA-1_9_78480659_G_A_- AAAGAACTCCCAGGCA-1 9 78480659 G A - 1 1 G>A C>T +AACAAGAGTAGAATGT-1_3_89074068_G_C_+ AACAAGAGTAGAATGT-1 3 89074068 G C + 1 1 G>C G>C +AACACACAGTGCACAG-1_9_107614337_G_C_- AACACACAGTGCACAG-1 9 107614337 G C - 1 1 G>C C>G +AAACGAACACGACTAT-1_9_3024460_C_A_- AAACGAACACGACTAT-1 9 3024460 C A - 1 1 C>A G>T +AACTTCTTCTTCACGC-1_5_143902408_C_T_+ AACTTCTTCTTCACGC-1 5 143902408 C T + 1 1 C>T C>T +AACAAGATCTAGGCCG-1_16_43639356_A_T_+ AACAAGATCTAGGCCG-1 16 43639356 A T + 1 1 A>T A>T +AAATGGAGTGAAGCTG-1_8_68827499_A_G_+ AAATGGAGTGAAGCTG-1 8 68827499 A G + 1 1 A>G A>G +AACAAGAGTAGAATGT-1_11_98768265_G_A_- AACAAGAGTAGAATGT-1 11 98768265 G A - 1 1 G>A C>T +AAGACAATCGATTGGT-1_7_90165572_T_C_+ AAGACAATCGATTGGT-1 7 90165572 T C + 1 1 T>C T>C +AAAGGTATCCGGTAGC-1_9_3000589_T_C_- AAAGGTATCCGGTAGC-1 9 3000589 T C - 1 1 T>C A>G +AACGTCAGTGCAACAG-1_17_39847458_A_G_+ AACGTCAGTGCAACAG-1 17 39847458 A G + 1 1 A>G A>G +AAACGAAAGGGAGGTG-1_8_72523290_T_A_- AAACGAAAGGGAGGTG-1 8 72523290 T A - 1 1 T>A A>T +AAATGGACAAGCGCAA-1_9_120844820_T_A_+ AAATGGACAAGCGCAA-1 9 120844820 T A + 1 1 T>A T>A +AACAAGAAGCAATTAG-1_19_5802647_C_T_- AACAAGAAGCAATTAG-1 19 5802647 C T - 1 5 C>T G>A +AACAACCAGTAATACG-1_5_143505611_G_A_- AACAACCAGTAATACG-1 5 143505611 G A - 1 1 G>A C>T +AAACCCATCGTACACA-1_1_63179572_A_T_+ AAACCCATCGTACACA-1 1 63179572 A T + 1 1 A>T A>T +AAACGAAGTGCTCTCT-1_MT_8472_A_G_+ AAACGAAGTGCTCTCT-1 MT 8472 A G + 1 1 A>G A>G +AACTTCTTCGGTCGGT-1_10_57516013_G_A_- AACTTCTTCGGTCGGT-1 10 57516013 G A - 1 1 G>A C>T +AACAGGGGTATGTCTG-1_5_147503653_C_A_+ AACAGGGGTATGTCTG-1 5 147503653 C A + 1 1 C>A C>A +AAACCCACAGAGGAAA-1_6_136872623_C_A_- AAACCCACAGAGGAAA-1 6 136872623 C A - 1 1 C>A G>T +AACCATGAGGTGCATG-1_11_31932552_C_T_+ AACCATGAGGTGCATG-1 11 31932552 C T + 1 1 C>T C>T +AACACACAGTGCACAG-1_2_125088437_A_T_+ AACACACAGTGCACAG-1 2 125088437 A T + 1 1 A>T A>T +AAAGGGCCATTGCTTT-1_13_44869614_A_G_+ AAAGGGCCATTGCTTT-1 13 44869614 A G + 1 1 A>G A>G +AACGAAAAGTGATAAC-1_11_51600989_A_C_- AACGAAAAGTGATAAC-1 11 51600989 A C - 1 1 A>C T>G +AAAGTGAGTCTGCAAT-1_17_39848018_C_T_+ AAAGTGAGTCTGCAAT-1 17 39848018 C T + 1 1 C>T C>T +AAATGGAAGCAGATAT-1_2_126709189_G_T_- AAATGGAAGCAGATAT-1 2 126709189 G T - 1 1 G>T C>A +AAAGTCCCAAACGGCA-1_13_97246719_C_T_+ AAAGTCCCAAACGGCA-1 13 97246719 C T + 1 1 C>T C>T +AACTTCTGTAGGCTCC-1_8_94173392_A_G_+ AACTTCTGTAGGCTCC-1 8 94173392 A G + 1 1 A>G A>G +AAAGGGCCAGCGCTTG-1_11_101288411_G_T_- AAAGGGCCAGCGCTTG-1 11 101288411 G T - 1 1 G>T C>A +AACAACCGTATGTCTG-1_11_77763336_C_T_+ AACAACCGTATGTCTG-1 11 77763336 C T + 1 1 C>T C>T +AACGTCAAGAGAAGGT-1_14_19278194_T_C_+ AACGTCAAGAGAAGGT-1 14 19278194 T C + 1 1 T>C T>C +AAACGCTCAGTAGGAC-1_16_44086937_G_A_- AAACGCTCAGTAGGAC-1 16 44086937 G A - 1 1 G>A C>T +AAATGGAGTAGTGTGG-1_6_34745768_C_T_+ AAATGGAGTAGTGTGG-1 6 34745768 C T + 1 1 C>T C>T +AAAGAACCAGCTTCGG-1_17_39848100_A_T_+ AAAGAACCAGCTTCGG-1 17 39848100 A T + 1 1 A>T A>T +AACGAAAAGAATCGTA-1_9_3035187_A_T_- AACGAAAAGAATCGTA-1 9 3035187 A T - 1 1 A>T T>A +AAAGTCCAGTCGGCCT-1_13_86045767_G_A_- AAAGTCCAGTCGGCCT-1 13 86045767 G A - 1 2 G>A C>T +AACGTCACAACCAGAG-1_16_33058740_C_T_+ AACGTCACAACCAGAG-1 16 33058740 C T + 1 1 C>T C>T +AAAGGGCCACTGAATC-1_7_126795281_G_A_- AAAGGGCCACTGAATC-1 7 126795281 G A - 1 1 G>A C>T +AAACCCACAGCAGTCC-1_6_17648577_T_C_+ AAACCCACAGCAGTCC-1 6 17648577 T C + 1 1 T>C T>C +AACTTCTAGCAGATAT-1_10_81459695_A_C_- AACTTCTAGCAGATAT-1 10 81459695 A C - 1 1 A>C T>G +AACGGGAAGCTTCGTA-1_13_43398518_G_A_+ AACGGGAAGCTTCGTA-1 13 43398518 G A + 1 1 G>A G>A +AACTTCTAGAGACAAG-1_18_45685566_A_C_+ AACTTCTAGAGACAAG-1 18 45685566 A C + 1 1 A>C A>C +AACAAAGTCCCGAGAC-1_8_119348803_C_T_+ AACAAAGTCCCGAGAC-1 8 119348803 C T + 1 1 C>T C>T +AACAAAGCACGCAGTC-1_5_108099131_C_A_+ AACAAAGCACGCAGTC-1 5 108099131 C A + 1 1 C>A C>A +AAATGGATCTGCGGCA-1_9_123461940_T_G_+ AAATGGATCTGCGGCA-1 9 123461940 T G + 1 1 T>G T>G +AAACGAAAGCTTGTGT-1_19_7215251_G_A_- AAACGAAAGCTTGTGT-1 19 7215251 G A - 1 1 G>A C>T +AACGTCACAAGAATGT-1_8_126590638_A_T_+ AACGTCACAAGAATGT-1 8 126590638 A T + 1 1 A>T A>T +AAATGGAGTACTCGAT-1_11_72712326_T_C_+ AAATGGAGTACTCGAT-1 11 72712326 T C + 1 1 T>C T>C +AAATGGAAGTTTCGGT-1_16_42181388_C_T_+ AAATGGAAGTTTCGGT-1 16 42181388 C T + 1 1 C>T C>T +AAAGGTATCAGTCATG-1_12_111115889_C_A_+ AAAGGTATCAGTCATG-1 12 111115889 C A + 1 1 C>A C>A +AAGAACACACTAGGTT-1_18_75001737_C_A_+ AAGAACACACTAGGTT-1 18 75001737 C A + 1 1 C>A C>A +AACACACTCTGCGGGT-1_5_146261080_C_A_+ AACACACTCTGCGGGT-1 5 146261080 C A + 1 1 C>A C>A +AACACACTCGCCTAGG-1_4_155625334_A_G_+ AACACACTCGCCTAGG-1 4 155625334 A G + 1 1 A>G A>G +AAGAACATCGAACCTA-1_17_39847435_A_G_- AAGAACATCGAACCTA-1 17 39847435 A G - 1 1 A>G T>C +AACGGGAAGTTACTCG-1_12_11325719_G_A_- AACGGGAAGTTACTCG-1 12 11325719 G A - 1 1 G>A C>T +AAATGGACACCCGTAG-1_5_146261150_T_G_+ AAATGGACACCCGTAG-1 5 146261150 T G + 1 1 T>G T>G +AAGAACACACTAGGTT-1_6_85133992_T_G_- AAGAACACACTAGGTT-1 6 85133992 T G - 1 1 T>G A>C +AACTTCTAGCCTAACT-1_9_25288295_C_T_+ AACTTCTAGCCTAACT-1 9 25288295 C T + 1 1 C>T C>T +AACCTGACATCGTCCT-1_14_103080895_G_T_- AACCTGACATCGTCCT-1 14 103080895 G T - 1 1 G>T C>A +AACAAAGCACGGCACT-1_5_146261137_A_G_+ AACAAAGCACGGCACT-1 5 146261137 A G + 1 1 A>G A>G +AACACACTCGAACCTA-1_8_25574542_G_A_+ AACACACTCGAACCTA-1 8 25574542 G A + 1 1 G>A G>A +AACCTGACAATAGTAG-1_10_60666617_G_C_- AACCTGACAATAGTAG-1 10 60666617 G C - 1 1 G>C C>G +AAGAACAGTTCGGTTA-1_9_7818393_A_G_- AAGAACAGTTCGGTTA-1 9 7818393 A G - 1 1 A>G T>C +AAACCCACACCGTGGT-1_15_83126083_C_T_- AAACCCACACCGTGGT-1 15 83126083 C T - 1 1 C>T G>A +AAGAACAGTAGGACTG-1_MT_8504_T_A_+ AAGAACAGTAGGACTG-1 MT 8504 T A + 1 2 T>A T>A +AAACCCACATCTGGGC-1_17_39847435_A_G_+ AAACCCACATCTGGGC-1 17 39847435 A G + 1 1 A>G A>G +AACCAACAGCTACTGT-1_3_34069805_A_G_+ AACCAACAGCTACTGT-1 3 34069805 A G + 1 1 A>G A>G +AAAGGATAGGTGAGCT-1_1_44181137_A_G_+ AAAGGATAGGTGAGCT-1 1 44181137 A G + 1 1 A>G A>G +AACGTCATCTATACGG-1_6_124760143_G_A_- AACGTCATCTATACGG-1 6 124760143 G A - 1 1 G>A C>T +AACAACCCACACACGC-1_6_6558406_G_A_- AACAACCCACACACGC-1 6 6558406 G A - 1 1 G>A C>T +AAGAACAAGCTCGACC-1_3_80705812_G_T_- AAGAACAAGCTCGACC-1 3 80705812 G T - 1 1 G>T C>A +AAAGTGACAAATGGCG-1_7_143513818_G_A_- AAAGTGACAAATGGCG-1 7 143513818 G A - 1 1 G>A C>T +AACGAAATCCTGTAAG-1_11_101063467_G_T_+ AACGAAATCCTGTAAG-1 11 101063467 G T + 1 1 G>T G>T +AACCTGACAATAGTAG-1_7_4008593_G_A_- AACCTGACAATAGTAG-1 7 4008593 G A - 1 1 G>A C>T +AACCTTTTCAGTCAGT-1_9_3018553_G_A_- AACCTTTTCAGTCAGT-1 9 3018553 G A - 1 1 G>A C>T +AACCTTTAGACCAGAC-1_9_106375204_A_G_+ AACCTTTAGACCAGAC-1 9 106375204 A G + 1 1 A>G A>G +AAAGTCCTCCCAGCGA-1_9_3035185_G_A_- AAAGTCCTCCCAGCGA-1 9 3035185 G A - 1 1 G>A C>T +AACCAACAGCTACTGT-1_19_47083461_A_G_+ AACCAACAGCTACTGT-1 19 47083461 A G + 1 1 A>G A>G +AAGAACACAAAGGTTA-1_8_64592704_T_C_- AAGAACACAAAGGTTA-1 8 64592704 T C - 1 1 T>C A>G +AACCACAAGGACAGCT-1_1_192073835_G_T_- AACCACAAGGACAGCT-1 1 192073835 G T - 1 1 G>T C>A +AACACACTCTGCGGAC-1_9_40804963_A_G_+ AACACACTCTGCGGAC-1 9 40804963 A G + 1 1 A>G A>G +AAAGAACAGTCGCGAA-1_8_126964059_G_T_- AAAGAACAGTCGCGAA-1 8 126964059 G T - 1 1 G>T C>A +AACAACCCACACACGC-1_3_89267032_C_G_+ AACAACCCACACACGC-1 3 89267032 C G + 1 1 C>G C>G +AAAGTCCAGTCTGGTT-1_16_11122767_C_T_- AAAGTCCAGTCTGGTT-1 16 11122767 C T - 1 1 C>T G>A +AAGAACACACTAGGTT-1_4_25609397_G_A_- AAGAACACACTAGGTT-1 4 25609397 G A - 1 1 G>A C>T +AACCAACGTCCCTGTT-1_5_30866036_T_A_+ AACCAACGTCCCTGTT-1 5 30866036 T A + 1 1 T>A T>A +AAACCCAGTTTCGTTT-1_17_39847458_A_G_+ AAACCCAGTTTCGTTT-1 17 39847458 A G + 1 1 A>G A>G +AAGATAGGTCATCAGT-1_11_114668603_C_T_+ AAGATAGGTCATCAGT-1 11 114668603 C T + 1 2 C>T C>T +AAATGGAAGCCAAGGT-1_12_102568738_T_C_- AAATGGAAGCCAAGGT-1 12 102568738 T C - 1 1 T>C A>G +AAGACAAGTCGAATTC-1_19_42191423_A_C_+ AAGACAAGTCGAATTC-1 19 42191423 A C + 1 1 A>C A>C +AAACGCTCATCAACCA-1_3_73310348_C_G_+ AAACGCTCATCAACCA-1 3 73310348 C G + 1 1 C>G C>G +AACTTCTCAGCGGATA-1_3_33811705_C_T_+ AACTTCTCAGCGGATA-1 3 33811705 C T + 1 1 C>T C>T +AAAGGATAGACTCAAA-1_17_39847435_A_G_- AAAGGATAGACTCAAA-1 17 39847435 A G - 1 1 A>G T>C +AAGACAAAGGCCCACT-1_16_57391683_T_A_- AAGACAAAGGCCCACT-1 16 57391683 T A - 1 1 T>A A>T +AAAGGGCTCTCATAGG-1_11_5969668_A_T_- AAAGGGCTCTCATAGG-1 11 5969668 A T - 1 1 A>T T>A +AAGACTCGTGGTACAG-1_1_92860003_C_T_- AAGACTCGTGGTACAG-1 1 92860003 C T - 1 1 C>T G>A +AACCAACTCGATGGAG-1_10_85899254_T_C_- AACCAACTCGATGGAG-1 10 85899254 T C - 1 1 T>C A>G +AAACCCACAATCTCTT-1_19_8927017_C_T_+ AAACCCACAATCTCTT-1 19 8927017 C T + 1 1 C>T C>T +AACCTGAAGGTAGACC-1_9_14510558_T_C_+ AACCTGAAGGTAGACC-1 9 14510558 T C + 1 1 T>C T>C +AACGGGAAGTTACTCG-1_5_121204549_C_T_+ AACGGGAAGTTACTCG-1 5 121204549 C T + 1 1 C>T C>T +AACCACAAGCCTTTCC-1_3_5256441_T_C_+ AACCACAAGCCTTTCC-1 3 5256441 T C + 1 1 T>C T>C +AAAGAACTCTGTCCCA-1_9_3000527_T_C_- AAAGAACTCTGTCCCA-1 9 3000527 T C - 1 1 T>C A>G +AACGGGAGTAAGGCCA-1_9_3037760_T_A_- AACGGGAGTAAGGCCA-1 9 3037760 T A - 1 1 T>A A>T +AACTTCTGTAGCACGA-1_5_146261080_C_A_+ AACTTCTGTAGCACGA-1 5 146261080 C A + 1 1 C>A C>A +AACCTTTTCCGTGTGG-1_10_90837719_T_C_+ AACCTTTTCCGTGTGG-1 10 90837719 T C + 1 1 T>C T>C +AACAACCCACACACGC-1_2_25998548_A_G_- AACAACCCACACACGC-1 2 25998548 A G - 1 1 A>G T>C +AAGACTCAGAAGCTCG-1_14_105114767_T_C_- AAGACTCAGAAGCTCG-1 14 105114767 T C - 1 1 T>C A>G +AACGAAACAGGAATAT-1_9_3017981_G_A_- AACGAAACAGGAATAT-1 9 3017981 G A - 1 1 G>A C>T +AAACGAAAGGTAGTCG-1_15_36771926_C_A_- AAACGAAAGGTAGTCG-1 15 36771926 C A - 1 1 C>A G>T +AAATGGAGTATTGGCT-1_17_39847435_A_G_- AAATGGAGTATTGGCT-1 17 39847435 A G - 1 1 A>G T>C +AAACGAAGTATCATGC-1_4_123657929_A_G_- AAACGAAGTATCATGC-1 4 123657929 A G - 1 1 A>G T>C +AAAGTCCCACAGTATC-1_9_72104918_A_T_- AAAGTCCCACAGTATC-1 9 72104918 A T - 1 1 A>T T>A +AACCACAAGTTGCCTA-1_1_106260289_C_T_+ AACCACAAGTTGCCTA-1 1 106260289 C T + 1 1 C>T C>T +AACTTCTTCTAGGAAA-1_11_62536365_C_T_- AACTTCTTCTAGGAAA-1 11 62536365 C T - 1 1 C>T G>A +AAGAACAAGAAGGGAT-1_9_36878717_A_T_+ AAGAACAAGAAGGGAT-1 9 36878717 A T + 1 1 A>T A>T +AACTTCTCACACGTGC-1_14_54940641_G_C_+ AACTTCTCACACGTGC-1 14 54940641 G C + 1 1 G>C G>C +AACTTCTTCTTAATCC-1_8_94179872_C_T_+ AACTTCTTCTTAATCC-1 8 94179872 C T + 1 1 C>T C>T +AACCTTTTCAGTCAGT-1_9_3018564_T_C_- AACCTTTTCAGTCAGT-1 9 3018564 T C - 1 1 T>C A>G +AACAAAGAGTGGAATT-1_5_146261080_C_A_+ AACAAAGAGTGGAATT-1 5 146261080 C A + 1 1 C>A C>A +AAATGGACACCCGTAG-1_5_146261149_G_C_+ AAATGGACACCCGTAG-1 5 146261149 G C + 1 1 G>C G>C +AACTTCTGTATACAGA-1_17_39847205_G_A_+ AACTTCTGTATACAGA-1 17 39847205 G A + 1 1 G>A G>A +AAATGGAAGCCGGATA-1_17_39848018_C_T_+ AAATGGAAGCCGGATA-1 17 39848018 C T + 1 1 C>T C>T +AACAAAGGTAGGGTAC-1_2_122152942_C_T_+ AACAAAGGTAGGGTAC-1 2 122152942 C T + 1 1 C>T C>T +AAAGAACTCGGCTTCT-1_11_77978997_C_T_+ AAAGAACTCGGCTTCT-1 11 77978997 C T + 1 1 C>T C>T +AACAACCAGACGACTG-1_19_6530842_C_A_- AACAACCAGACGACTG-1 19 6530842 C A - 1 1 C>A G>T +AACCACACAATAGTAG-1_12_11325435_G_A_- AACCACACAATAGTAG-1 12 11325435 G A - 1 1 G>A C>T +AACAAGAGTAGAATGT-1_4_156199767_A_C_- AACAAGAGTAGAATGT-1 4 156199767 A C - 1 1 A>C T>G +AACACACGTGTTGCCG-1_1_30865760_A_C_- AACACACGTGTTGCCG-1 1 30865760 A C - 1 1 A>C T>G +AACCAACAGTCTGCGC-1_16_57391454_T_C_- AACCAACAGTCTGCGC-1 16 57391454 T C - 1 1 T>C A>G +AACAAGAAGGTTCAGG-1_4_123194621_C_T_+ AACAAGAAGGTTCAGG-1 4 123194621 C T + 1 1 C>T C>T +AACGTCAAGACTCTTG-1_5_146261076_T_C_+ AACGTCAAGACTCTTG-1 5 146261076 T C + 1 1 T>C T>C +AAACGCTCAGTAGGAC-1_11_96857590_A_G_+ AAACGCTCAGTAGGAC-1 11 96857590 A G + 1 1 A>G A>G +AAAGGGCCAGCGCTTG-1_4_128720497_G_C_+ AAAGGGCCAGCGCTTG-1 4 128720497 G C + 1 1 G>C G>C +AACCTTTAGACCATAA-1_2_6744389_T_C_- AACCTTTAGACCATAA-1 2 6744389 T C - 1 1 T>C A>G +AAGACAAAGATGCTAA-1_2_49774635_C_T_+ AAGACAAAGATGCTAA-1 2 49774635 C T + 1 1 C>T C>T +AAGAACAGTTGGAGGT-1_15_98950075_A_G_- AAGAACAGTTGGAGGT-1 15 98950075 A G - 1 1 A>G T>C +AACCACAAGACTTGTC-1_17_24721223_C_T_+ AACCACAAGACTTGTC-1 17 24721223 C T + 1 1 C>T C>T +AACCAACCAGTCGCTG-1_11_79579743_C_T_+ AACCAACCAGTCGCTG-1 11 79579743 C T + 1 1 C>T C>T +AAATGGACACCATATG-1_2_98666819_A_G_- AAATGGACACCATATG-1 2 98666819 A G - 1 1 A>G T>C +AAGAACACAGCACAGA-1_10_90725209_G_A_+ AAGAACACAGCACAGA-1 10 90725209 G A + 1 1 G>A G>A +AAGACTCCAGGCGAAT-1_11_107497524_G_A_+ AAGACTCCAGGCGAAT-1 11 107497524 G A + 1 1 G>A G>A +AACCAACCAATAGGGC-1_9_3000377_T_A_- AACCAACCAATAGGGC-1 9 3000377 T A - 1 1 T>A A>T +AACGTCATCTGGCTGG-1_6_122476089_T_G_- AACGTCATCTGGCTGG-1 6 122476089 T G - 1 1 T>G A>C +AACCTGATCGTGCTCT-1_17_39847978_A_T_+ AACCTGATCGTGCTCT-1 17 39847978 A T + 1 1 A>T A>T +AACTTCTCACACGTGC-1_2_4642678_T_C_- AACTTCTCACACGTGC-1 2 4642678 T C - 1 1 T>C A>G +AACGTCACAAGAATGT-1_3_88744985_C_T_- AACGTCACAAGAATGT-1 3 88744985 C T - 1 1 C>T G>A +AACTTCTAGAACAGGA-1_7_4134752_A_G_+ AACTTCTAGAACAGGA-1 7 4134752 A G + 1 1 A>G A>G +AAAGTGATCTCGGCTT-1_X_136838259_T_A_+ AAAGTGATCTCGGCTT-1 X 136838259 T A + 1 2 T>A T>A +AAAGTCCAGTCGGCCT-1_19_5603272_G_A_- AAAGTCCAGTCGGCCT-1 19 5603272 G A - 1 1 G>A C>T +AAACGAAAGGTAGTCG-1_2_71543636_C_T_- AAACGAAAGGTAGTCG-1 2 71543636 C T - 1 1 C>T G>A +AACCCAAAGATTGTGA-1_17_39847435_A_G_+ AACCCAAAGATTGTGA-1 17 39847435 A G + 1 1 A>G A>G +AACGTCACAAGAATGT-1_7_123193751_A_G_+ AACGTCACAAGAATGT-1 7 123193751 A G + 1 1 A>G A>G +AACCATGAGTTCCGTA-1_14_64809486_A_G_+ AACCATGAGTTCCGTA-1 14 64809486 A G + 1 1 A>G A>G +AACCTGACATCATCCC-1_9_107665931_G_T_- AACCTGACATCATCCC-1 9 107665931 G T - 1 1 G>T C>A +AACGTCAAGAACTCCT-1_9_3035141_C_A_- AACGTCAAGAACTCCT-1 9 3035141 C A - 1 1 C>A G>T +AACGGGAAGTTGCCCG-1_17_34655017_G_A_+ AACGGGAAGTTGCCCG-1 17 34655017 G A + 1 1 G>A G>A +AAGATAGCAGCAATTC-1_MT_9193_C_A_+ AAGATAGCAGCAATTC-1 MT 9193 C A + 1 1 C>A C>A +AACCACAAGGACAGCT-1_17_39848100_A_T_+ AACCACAAGGACAGCT-1 17 39848100 A T + 1 1 A>T A>T +AACCTGACACACAGAG-1_16_57391677_C_G_- AACCTGACACACAGAG-1 16 57391677 C G - 1 1 C>G G>C +AAAGTCCAGTCTGGTT-1_5_88959938_T_G_+ AAAGTCCAGTCTGGTT-1 5 88959938 T G + 1 1 T>G T>G +AAAGGTAAGACTTCAC-1_11_57249686_G_A_+ AAAGGTAAGACTTCAC-1 11 57249686 G A + 1 1 G>A G>A +AAAGGGCAGGACATCG-1_10_94563926_C_G_+ AAAGGGCAGGACATCG-1 10 94563926 C G + 1 1 C>G C>G +AACGTCACAAAGAGTT-1_MT_3619_G_A_+ AACGTCACAAAGAGTT-1 MT 3619 G A + 1 2 G>A G>A +AACGGGAAGAGATGCC-1_1_178952154_G_A_- AACGGGAAGAGATGCC-1 1 178952154 G A - 1 1 G>A C>T +AAACGCTAGGTTACAA-1_11_86584850_G_A_- AAACGCTAGGTTACAA-1 11 86584850 G A - 1 1 G>A C>T +AACCACAAGCCTTTCC-1_6_82652136_G_C_- AACCACAAGCCTTTCC-1 6 82652136 G C - 1 1 G>C C>G +AACAAAGAGGTGCGAT-1_5_112419290_G_A_- AACAAAGAGGTGCGAT-1 5 112419290 G A - 1 1 G>A C>T +AACAACCAGTAATACG-1_12_24861020_C_T_+ AACAACCAGTAATACG-1 12 24861020 C T + 1 1 C>T C>T +AACAAAGCACGCAGTC-1_5_63965810_A_T_- AACAAAGCACGCAGTC-1 5 63965810 A T - 1 1 A>T T>A +AACCCAACACAATCTG-1_11_42131657_G_A_- AACCCAACACAATCTG-1 11 42131657 G A - 1 1 G>A C>T +AAGACTCTCGAGCCAC-1_MT_9318_G_A_+ AAGACTCTCGAGCCAC-1 MT 9318 G A + 1 1 G>A G>A +AAGACTCGTTCGGTCG-1_MT_11428_A_C_+ AAGACTCGTTCGGTCG-1 MT 11428 A C + 1 1 A>C A>C +AACCAACGTGGTATGG-1_19_5801335_G_A_- AACCAACGTGGTATGG-1 19 5801335 G A - 1 1 G>A C>T +AACGAAAAGCTAAACA-1_2_174462568_T_C_- AACGAAAAGCTAAACA-1 2 174462568 T C - 1 1 T>C A>G +AAACCCACATATCTGG-1_10_81123876_G_A_+ AAACCCACATATCTGG-1 10 81123876 G A + 1 1 G>A G>A +AAACGAAGTGCTCTCT-1_13_111425892_T_C_- AAACGAAGTGCTCTCT-1 13 111425892 T C - 1 1 T>C A>G +AAGACTCCAGGCGAAT-1_X_56793148_G_T_+ AAGACTCCAGGCGAAT-1 X 56793148 G T + 1 1 G>T G>T +AAAGGGCTCTCACTCG-1_10_100070549_G_A_+ AAAGGGCTCTCACTCG-1 10 100070549 G A + 1 1 G>A G>A +AACCACACAGCTTTGA-1_19_5800797_C_A_- AACCACACAGCTTTGA-1 19 5800797 C A - 1 1 C>A G>T +AACACACAGTGCACAG-1_17_26046611_T_A_- AACACACAGTGCACAG-1 17 26046611 T A - 1 1 T>A A>T +AAACCCACAAAGACGC-1_13_69815939_T_C_+ AAACCCACAAAGACGC-1 13 69815939 T C + 1 1 T>C T>C +AACCCAACATGTGGTT-1_1_4897532_C_T_+ AACCCAACATGTGGTT-1 1 4897532 C T + 1 1 C>T C>T +AACCTGAAGGTAGACC-1_17_39846981_C_T_+ AACCTGAAGGTAGACC-1 17 39846981 C T + 1 1 C>T C>T +AACCTTTAGGGTATAT-1_14_17741518_G_A_+ AACCTTTAGGGTATAT-1 14 17741518 G A + 1 1 G>A G>A +AACCACAGTCTACAAC-1_10_37134976_G_A_- AACCACAGTCTACAAC-1 10 37134976 G A - 1 1 G>A C>T +AAAGGATGTACCATAC-1_14_19417355_A_C_- AAAGGATGTACCATAC-1 14 19417355 A C - 1 1 A>C T>G +AACGTCAAGCGAGGAG-1_9_70554625_T_G_+ AACGTCAAGCGAGGAG-1 9 70554625 T G + 1 1 T>G T>G +AACCAACTCGATGGAG-1_11_93902335_T_G_+ AACCAACTCGATGGAG-1 11 93902335 T G + 1 1 T>G T>G AAACCCACATATCTGG-1_19_53379610_T_A_- AAACCCACATATCTGG-1 19 53379610 T A - 1 1 T>A A>T +AAAGGGCTCTCACTCG-1_9_29801420_G_A_- AAAGGGCTCTCACTCG-1 9 29801420 G A - 1 1 G>A C>T +AAAGAACCAAATTAGG-1_3_33809930_A_G_+ AAAGAACCAAATTAGG-1 3 33809930 A G + 1 1 A>G A>G +AACCTGACATGAGATA-1_6_143056869_T_C_- AACCTGACATGAGATA-1 6 143056869 T C - 1 1 T>C A>G +AAGAACAGTTGCAAGG-1_14_73363069_T_C_- AAGAACAGTTGCAAGG-1 14 73363069 T C - 1 1 T>C A>G +AAATGGATCGCCCAGA-1_16_94469074_C_T_+ AAATGGATCGCCCAGA-1 16 94469074 C T + 1 1 C>T C>T +AAACGAAAGCGAACTG-1_15_79672698_C_T_+ AAACGAAAGCGAACTG-1 15 79672698 C T + 1 1 C>T C>T +AAAGGATCACGTAGTT-1_5_146261076_T_C_+ AAAGGATCACGTAGTT-1 5 146261076 T C + 1 1 T>C T>C +AAAGGTAAGACTTCAC-1_1_178319149_C_G_+ AAAGGTAAGACTTCAC-1 1 178319149 C G + 1 1 C>G C>G +AACAAGAGTATACAGA-1_17_39847426_T_C_+ AACAAGAGTATACAGA-1 17 39847426 T C + 1 1 T>C T>C +AAACGCTTCTGAGCAT-1_1_170874313_G_A_- AAACGCTTCTGAGCAT-1 1 170874313 G A - 1 1 G>A C>T +AAAGAACCAGCTTCGG-1_17_39848018_C_T_+ AAAGAACCAGCTTCGG-1 17 39848018 C T + 1 1 C>T C>T +AAATGGACAAGCGCAA-1_11_6419681_C_T_+ AAATGGACAAGCGCAA-1 11 6419681 C T + 1 1 C>T C>T +AACCTGACAGCAGTGA-1_18_38588030_G_A_- AACCTGACAGCAGTGA-1 18 38588030 G A - 1 1 G>A C>T +AAGACTCAGAAATTCG-1_16_57391683_T_A_- AAGACTCAGAAATTCG-1 16 57391683 T A - 1 1 T>A A>T +AACTTCTAGCAGATAT-1_5_19713097_G_A_+ AACTTCTAGCAGATAT-1 5 19713097 G A + 1 1 G>A G>A +AACGGGAAGCAGCCCT-1_9_3014129_G_T_- AACGGGAAGCAGCCCT-1 9 3014129 G T - 1 1 G>T C>A +AAAGGATCATTCATCT-1_4_85341981_T_C_+ AAAGGATCATTCATCT-1 4 85341981 T C + 1 1 T>C T>C +AAAGTCCAGTCGGCCT-1_4_149648644_C_T_+ AAAGTCCAGTCGGCCT-1 4 149648644 C T + 1 1 C>T C>T +AAAGGATAGTCCTGTA-1_17_39847458_A_G_- AAAGGATAGTCCTGTA-1 17 39847458 A G - 1 1 A>G T>C +AACGGGAAGCAGCCCT-1_5_146261080_C_A_+ AACGGGAAGCAGCCCT-1 5 146261080 C A + 1 1 C>A C>A +AACGAAAAGAATCGTA-1_9_3035203_G_A_- AACGAAAAGAATCGTA-1 9 3035203 G A - 1 1 G>A C>T +AAAGTCCGTGAGTAAT-1_8_70799207_A_G_- AAAGTCCGTGAGTAAT-1 8 70799207 A G - 1 1 A>G T>C +AAACGCTTCTGAGCAT-1_12_78350934_G_T_+ AAACGCTTCTGAGCAT-1 12 78350934 G T + 1 1 G>T G>T +AAGATAGCAGCAATTC-1_9_3000527_T_C_- AAGATAGCAGCAATTC-1 9 3000527 T C - 1 1 T>C A>G +AAACGCTGTCATGGCC-1_17_39847403_T_G_+ AAACGCTGTCATGGCC-1 17 39847403 T G + 1 2 T>G T>G +AAGACTCGTGGTACAG-1_9_64715472_G_A_- AAGACTCGTGGTACAG-1 9 64715472 G A - 1 1 G>A C>T +AAAGTCCAGCACAAAT-1_1_180437498_A_T_- AAAGTCCAGCACAAAT-1 1 180437498 A T - 1 1 A>T T>A +AAACCCACATTCACAG-1_17_39847458_A_G_+ AAACCCACATTCACAG-1 17 39847458 A G + 1 1 A>G A>G +AACCACATCCTAGCTC-1_12_109571380_G_A_- AACCACATCCTAGCTC-1 12 109571380 G A - 1 1 G>A C>T +AACGTCATCCTTACCG-1_2_102790708_C_T_+ AACGTCATCCTTACCG-1 2 102790708 C T + 1 1 C>T C>T +AAACCCACATATCTCT-1_2_174464021_C_T_- AAACCCACATATCTCT-1 2 174464021 C T - 1 1 C>T G>A +AAACGAACACGACGAA-1_4_56875849_T_C_- AAACGAACACGACGAA-1 4 56875849 T C - 1 1 T>C A>G +AACAACCAGTAACAGT-1_2_5379332_A_T_- AACAACCAGTAACAGT-1 2 5379332 A T - 1 1 A>T T>A +AACCCAAAGCAAATGT-1_14_93855208_A_G_- AACCCAAAGCAAATGT-1 14 93855208 A G - 1 1 A>G T>C +AACGTCAAGAACTCCT-1_2_98667234_T_A_- AACGTCAAGAACTCCT-1 2 98667234 T A - 1 1 T>A A>T +AAGATAGCACGCGTGT-1_18_35602910_A_G_+ AAGATAGCACGCGTGT-1 18 35602910 A G + 1 1 A>G A>G +AACGTCAAGCTGAAGC-1_5_146261076_T_C_+ AACGTCAAGCTGAAGC-1 5 146261076 T C + 1 1 T>C T>C +AACAACCTCGCAGATT-1_17_39848018_C_T_+ AACAACCTCGCAGATT-1 17 39848018 C T + 1 1 C>T C>T +AACCACATCTTACACT-1_14_63539757_C_A_- AACCACATCTTACACT-1 14 63539757 C A - 1 1 C>A G>T +AAAGGATGTACCATAC-1_1_93015627_G_A_- AAAGGATGTACCATAC-1 1 93015627 G A - 1 1 G>A C>T +AACCAACAGCCAAGGT-1_9_3035170_C_T_- AACCAACAGCCAAGGT-1 9 3035170 C T - 1 1 C>T G>A +AACGAAACAGCCCACA-1_17_70963741_A_G_+ AACGAAACAGCCCACA-1 17 70963741 A G + 1 1 A>G A>G +AACAAAGGTCCCGCAA-1_11_31935438_C_T_+ AACAAAGGTCCCGCAA-1 11 31935438 C T + 1 1 C>T C>T +AAAGGTACACTACACA-1_17_39847458_A_G_+ AAAGGTACACTACACA-1 17 39847458 A G + 1 1 A>G A>G +AACCACATCGGAGATG-1_15_78919385_C_T_+ AACCACATCGGAGATG-1 15 78919385 C T + 1 1 C>T C>T +AAATGGACACGGAAGT-1_12_90123852_C_G_+ AAATGGACACGGAAGT-1 12 90123852 C G + 1 1 C>G C>G +AAATGGAAGCAGATAT-1_17_39848011_G_A_- AAATGGAAGCAGATAT-1 17 39848011 G A - 1 1 G>A C>T +AACGAAAAGCTAAACA-1_15_74747901_G_A_- AACGAAAAGCTAAACA-1 15 74747901 G A - 1 1 G>A C>T +AACGTCAGTGGAAATT-1_10_128625256_G_A_- AACGTCAGTGGAAATT-1 10 128625256 G A - 1 1 G>A C>T +AAACGCTGTCAACACT-1_11_86604151_C_T_- AAACGCTGTCAACACT-1 11 86604151 C T - 1 1 C>T G>A +AAAGGGCGTTCCAAAC-1_7_87648380_A_G_+ AAAGGGCGTTCCAAAC-1 7 87648380 A G + 1 1 A>G A>G +AACTTCTGTGCATGTT-1_16_57391688_T_G_- AACTTCTGTGCATGTT-1 16 57391688 T G - 1 1 T>G A>C +AACGGGATCTTCCCGA-1_5_146261106_C_G_+ AACGGGATCTTCCCGA-1 5 146261106 C G + 1 1 C>G C>G +AAACCCACAATCTCTT-1_8_70700300_A_C_+ AAACCCACAATCTCTT-1 8 70700300 A C + 1 1 A>C A>C +AAACCCATCGGATAAA-1_2_119586934_G_A_+ AAACCCATCGGATAAA-1 2 119586934 G A + 1 1 G>A G>A +AAAGTCCAGTCGGCCT-1_8_15026882_G_A_+ AAAGTCCAGTCGGCCT-1 8 15026882 G A + 1 1 G>A G>A +AACCACAAGCTTTGTG-1_14_18269190_G_A_- AACCACAAGCTTTGTG-1 14 18269190 G A - 1 1 G>A C>T +AACAAAGAGCCGATTT-1_6_80214467_G_C_+ AACAAAGAGCCGATTT-1 6 80214467 G C + 1 1 G>C G>C +AAGACAATCGCGTCGA-1_16_49911549_T_C_+ AAGACAATCGCGTCGA-1 16 49911549 T C + 1 1 T>C T>C +AAACGAAGTTCATCTT-1_15_99409819_A_G_+ AAACGAAGTTCATCTT-1 15 99409819 A G + 1 1 A>G A>G +AAAGTCCAGTGGGAAA-1_5_124119976_G_A_- AAAGTCCAGTGGGAAA-1 5 124119976 G A - 1 1 G>A C>T +AAAGTCCTCCTACAAG-1_12_44205961_C_T_- AAAGTCCTCCTACAAG-1 12 44205961 C T - 1 1 C>T G>A +AAAGAACTCTCCGTGT-1_15_102331453_T_G_+ AAAGAACTCTCCGTGT-1 15 102331453 T G + 1 1 T>G T>G +AACCTTTCATCGCTGG-1_17_39848018_C_T_+ AACCTTTCATCGCTGG-1 17 39848018 C T + 1 1 C>T C>T +AACCAACTCAAGAATG-1_3_103056943_C_T_+ AACCAACTCAAGAATG-1 3 103056943 C T + 1 1 C>T C>T +AACACACAGTGCACAG-1_9_107614332_T_G_- AACACACAGTGCACAG-1 9 107614332 T G - 1 1 T>G A>C +AAACGAAAGCTGCCAC-1_9_26761128_G_T_+ AAACGAAAGCTGCCAC-1 9 26761128 G T + 1 1 G>T G>T +AAGACAAGTCGAATTC-1_9_37545084_G_A_- AAGACAAGTCGAATTC-1 9 37545084 G A - 1 3 G>A C>T +AAACGCTGTCCACATA-1_9_3003421_A_G_- AAACGCTGTCCACATA-1 9 3003421 A G - 1 1 A>G T>C +AACCACAAGCTTTGTG-1_3_89339696_C_G_- AACCACAAGCTTTGTG-1 3 89339696 C G - 1 1 C>G G>C +AACAACCAGGGAACAA-1_8_84974158_A_G_+ AACAACCAGGGAACAA-1 8 84974158 A G + 1 1 A>G A>G +AACCACAAGCTTTGTG-1_8_111952827_C_T_+ AACCACAAGCTTTGTG-1 8 111952827 C T + 1 1 C>T C>T +AACCAACGTAACAGGC-1_9_75565787_A_T_- AACCAACGTAACAGGC-1 9 75565787 A T - 1 1 A>T T>A +AAAGTCCAGTCGGCCT-1_2_174346453_C_T_+ AAAGTCCAGTCGGCCT-1 2 174346453 C T + 1 1 C>T C>T +AAATGGACACGGAAGT-1_12_90123850_C_T_+ AAATGGACACGGAAGT-1 12 90123850 C T + 1 1 C>T C>T +AAGACTCAGAAGCTCG-1_16_57391454_T_C_- AAGACTCAGAAGCTCG-1 16 57391454 T C - 1 1 T>C A>G +AAAGTGACAACACAAA-1_17_39847458_A_G_+ AAAGTGACAACACAAA-1 17 39847458 A G + 1 1 A>G A>G +AAACGCTGTCAAATCC-1_9_29769246_A_G_- AAACGCTGTCAAATCC-1 9 29769246 A G - 1 1 A>G T>C +AACACACAGTGCACAG-1_9_107614333_C_A_- AACACACAGTGCACAG-1 9 107614333 C A - 1 1 C>A G>T +AAAGTCCAGTCGGCCT-1_4_138457992_C_T_+ AAAGTCCAGTCGGCCT-1 4 138457992 C T + 1 1 C>T C>T +AACAGGGCAAACTCGT-1_X_136838184_T_A_+ AACAGGGCAAACTCGT-1 X 136838184 T A + 1 3 T>A T>A +AAGACAAAGAGTTCGG-1_16_43619131_A_C_+ AAGACAAAGAGTTCGG-1 16 43619131 A C + 1 1 A>C A>C +AAAGTCCAGTCGGCCT-1_19_44139340_G_A_- AAAGTCCAGTCGGCCT-1 19 44139340 G A - 1 1 G>A C>T +AAGAACAAGTCTCTGA-1_10_128624618_G_A_- AAGAACAAGTCTCTGA-1 10 128624618 G A - 1 1 G>A C>T +AACCACATCGTCAGAT-1_5_146261076_T_C_+ AACCACATCGTCAGAT-1 5 146261076 T C + 1 1 T>C T>C +AACCACAAGCTTTGTG-1_2_28230465_A_G_+ AACCACAAGCTTTGTG-1 2 28230465 A G + 1 1 A>G A>G +AACCTTTAGGGCTAAC-1_14_64417888_C_A_- AACCTTTAGGGCTAAC-1 14 64417888 C A - 1 1 C>A G>T +AACCTTTTCCGTGTGG-1_17_39848018_C_T_+ AACCTTTTCCGTGTGG-1 17 39848018 C T + 1 1 C>T C>T +AACCATGTCCAATCTT-1_12_31331588_G_A_- AACCATGTCCAATCTT-1 12 31331588 G A - 1 1 G>A C>T +AACCACATCGGAGATG-1_14_64593916_T_A_+ AACCACATCGGAGATG-1 14 64593916 T A + 1 1 T>A T>A +AACCACAAGACTTGTC-1_1_160199667_A_G_+ AACCACAAGACTTGTC-1 1 160199667 A G + 1 1 A>G A>G +AACAAAGCACAGTATC-1_3_69387072_T_C_+ AACAAAGCACAGTATC-1 3 69387072 T C + 1 1 T>C T>C +AAACGCTAGGTAGGCT-1_15_99735570_G_A_- AAACGCTAGGTAGGCT-1 15 99735570 G A - 1 1 G>A C>T +AAGAACACAGCACAGA-1_17_39844879_T_C_+ AAGAACACAGCACAGA-1 17 39844879 T C + 1 1 T>C T>C +AACGTCACATAGATGA-1_9_113897566_T_A_+ AACGTCACATAGATGA-1 9 113897566 T A + 1 1 T>A T>A +AAACCCAAGATTGCGG-1_2_167481581_T_G_- AAACCCAAGATTGCGG-1 2 167481581 T G - 1 1 T>G A>C +AAAGAACAGTCGCGAA-1_11_37139306_T_C_- AAAGAACAGTCGCGAA-1 11 37139306 T C - 1 1 T>C A>G +AAAGGGCCAGCGCTTG-1_4_41191289_T_A_+ AAAGGGCCAGCGCTTG-1 4 41191289 T A + 1 1 T>A T>A +AACGTCACATGAATCC-1_3_65379903_A_G_- AACGTCACATGAATCC-1 3 65379903 A G - 1 1 A>G T>C +AAACCCACATATCTGG-1_15_89291589_C_A_- AAACCCACATATCTGG-1 15 89291589 C A - 1 1 C>A G>T +AAATGGAGTACTCGAT-1_9_3035182_T_A_- AAATGGAGTACTCGAT-1 9 3035182 T A - 1 1 T>A A>T +AAGATAGAGCTTGTGT-1_5_137329388_A_C_- AAGATAGAGCTTGTGT-1 5 137329388 A C - 1 1 A>C T>G +AACCAACTCGATGGAG-1_8_119348191_C_T_+ AACCAACTCGATGGAG-1 8 119348191 C T + 1 1 C>T C>T +AAATGGAAGCAGATAT-1_1_127807762_A_G_+ AAATGGAAGCAGATAT-1 1 127807762 A G + 1 1 A>G A>G +AAACGCTGTCAACACT-1_10_60135048_T_A_+ AAACGCTGTCAACACT-1 10 60135048 T A + 1 1 T>A T>A +AAACGAAAGGCTTTCA-1_15_98570268_A_G_- AAACGAAAGGCTTTCA-1 15 98570268 A G - 1 1 A>G T>C +AAACGAATCCTTGGAA-1_18_35572461_A_T_+ AAACGAATCCTTGGAA-1 18 35572461 A T + 1 1 A>T A>T +AAACGAAGTTATGGTC-1_17_39847183_C_T_+ AAACGAAGTTATGGTC-1 17 39847183 C T + 1 1 C>T C>T +AAGACAAGTACTGACT-1_6_80027193_C_T_+ AAGACAAGTACTGACT-1 6 80027193 C T + 1 1 C>T C>T +AAACGCTAGGTTACAA-1_10_80403152_G_A_- AAACGCTAGGTTACAA-1 10 80403152 G A - 1 1 G>A C>T +AAACGAAAGGTAGTCG-1_1_143746753_C_A_+ AAACGAAAGGTAGTCG-1 1 143746753 C A + 1 1 C>A C>A +AAACGCTGTCAACACT-1_17_71856506_A_C_+ AAACGCTGTCAACACT-1 17 71856506 A C + 1 1 A>C A>C +AAAGTCCGTACGTACT-1_1_68878410_A_T_- AAAGTCCGTACGTACT-1 1 68878410 A T - 1 1 A>T T>A +AAAGTCCGTGACTGTT-1_12_31497631_A_G_- AAAGTCCGTGACTGTT-1 12 31497631 A G - 1 1 A>G T>C +AAAGGTAGTGACGTCC-1_14_24493440_A_G_+ AAAGGTAGTGACGTCC-1 14 24493440 A G + 1 1 A>G A>G +AAATGGAGTACTCGAT-1_19_6906904_T_A_- AAATGGAGTACTCGAT-1 19 6906904 T A - 1 1 T>A A>T +AAAGTCCGTCCGTTTC-1_MT_9188_T_A_+ AAAGTCCGTCCGTTTC-1 MT 9188 T A + 1 1 T>A T>A +AAGACTCGTGGTACAG-1_14_77721506_C_T_+ AAGACTCGTGGTACAG-1 14 77721506 C T + 1 1 C>T C>T +AACCACATCGGAGATG-1_9_95979129_T_A_+ AACCACATCGGAGATG-1 9 95979129 T A + 1 1 T>A T>A +AAAGGGCCAGCGCTTG-1_4_41191270_C_A_+ AAAGGGCCAGCGCTTG-1 4 41191270 C A + 1 1 C>A C>A +AAAGTGAAGGCATCGA-1_2_155785394_T_C_+ AAAGTGAAGGCATCGA-1 2 155785394 T C + 1 1 T>C T>C +AAAGTCCCACCACATA-1_17_26792260_A_G_+ AAAGTCCCACCACATA-1 17 26792260 A G + 1 1 A>G A>G +AACTTCTAGATACGAT-1_16_14109330_G_T_- AACTTCTAGATACGAT-1 16 14109330 G T - 1 1 G>T C>A +AACCATGGTCATACCA-1_16_10284423_G_A_- AACCATGGTCATACCA-1 16 10284423 G A - 1 1 G>A C>T +AAGACTCTCCTCTAAT-1_10_127281740_C_T_+ AAGACTCTCCTCTAAT-1 10 127281740 C T + 1 1 C>T C>T +AAGAACAAGGTCGAGT-1_3_88744883_G_A_- AAGAACAAGGTCGAGT-1 3 88744883 G A - 1 1 G>A C>T +AACCTGACAAACCACT-1_9_107945373_T_C_+ AACCTGACAAACCACT-1 9 107945373 T C + 1 1 T>C T>C +AACGAAATCCTGTAAG-1_X_157879903_C_T_- AACGAAATCCTGTAAG-1 X 157879903 C T - 1 1 C>T G>A +AACGGGACAGTTGTTG-1_17_39847058_C_T_+ AACGGGACAGTTGTTG-1 17 39847058 C T + 1 1 C>T C>T +AAGACTCTCATTGGTG-1_9_3035770_A_G_- AAGACTCTCATTGGTG-1 9 3035770 A G - 1 1 A>G T>C +AAATGGAAGTTTCGGT-1_16_42181369_C_T_+ AAATGGAAGTTTCGGT-1 16 42181369 C T + 1 1 C>T C>T +AACCTTTCATTGAAAG-1_3_153501031_C_T_- AACCTTTCATTGAAAG-1 3 153501031 C T - 1 1 C>T G>A +AAAGGGCCATGTCTAG-1_7_24926297_A_C_+ AAAGGGCCATGTCTAG-1 7 24926297 A C + 1 1 A>C A>C +AACACACGTTAAACAG-1_7_34202270_G_A_- AACACACGTTAAACAG-1 7 34202270 G A - 1 1 G>A C>T +AACCAACAGTATCTGC-1_15_81473923_C_T_+ AACCAACAGTATCTGC-1 15 81473923 C T + 1 1 C>T C>T +AAACCCAGTATGTCCA-1_6_83305950_G_A_- AAACCCAGTATGTCCA-1 6 83305950 G A - 1 1 G>A C>T +AACACACCATCGTCCT-1_2_28214160_C_T_+ AACACACCATCGTCCT-1 2 28214160 C T + 1 1 C>T C>T +AACTTCTCATGAATAG-1_8_123103328_C_T_+ AACTTCTCATGAATAG-1 8 123103328 C T + 1 1 C>T C>T +AACAAGAGTACGATGG-1_17_39847403_T_G_+ AACAAGAGTACGATGG-1 17 39847403 T G + 1 1 T>G T>G +AACTTCTAGGGATCTG-1_11_57326981_A_G_+ AACTTCTAGGGATCTG-1 11 57326981 A G + 1 1 A>G A>G +AACCTTTCATCGCTGG-1_17_39847426_T_C_+ AACCTTTCATCGCTGG-1 17 39847426 T C + 1 1 T>C T>C +AAGACTCGTCCACATA-1_5_146261106_C_G_+ AAGACTCGTCCACATA-1 5 146261106 C G + 1 1 C>G C>G +AACGTCAGTAGAGCTG-1_14_30912887_G_T_- AACGTCAGTAGAGCTG-1 14 30912887 G T - 1 1 G>T C>A +AACCAACTCAGTGGGA-1_17_39847458_A_G_- AACCAACTCAGTGGGA-1 17 39847458 A G - 1 1 A>G T>C +AACCAACGTCCCTGTT-1_5_30866040_T_A_+ AACCAACGTCCCTGTT-1 5 30866040 T A + 1 1 T>A T>A +AAAGGTACACCGTGCA-1_16_94369826_T_A_- AAAGGTACACCGTGCA-1 16 94369826 T A - 1 1 T>A A>T +AACTTCTGTAGCACGA-1_5_146261106_C_G_+ AACTTCTGTAGCACGA-1 5 146261106 C G + 1 1 C>G C>G +AACACACCAGAGGCTA-1_19_21460260_G_A_- AACACACCAGAGGCTA-1 19 21460260 G A - 1 1 G>A C>T +AACCCAAGTATCGATC-1_10_95480912_G_A_- AACCCAAGTATCGATC-1 10 95480912 G A - 1 1 G>A C>T +AAAGAACTCTGTCCCA-1_3_132677128_G_A_- AAAGAACTCTGTCCCA-1 3 132677128 G A - 1 1 G>A C>T +AACAAAGAGGTGCGAT-1_5_112419345_T_A_- AACAAAGAGGTGCGAT-1 5 112419345 T A - 1 1 T>A A>T +AAGATAGGTCATCAGT-1_1_66786509_T_A_- AAGATAGGTCATCAGT-1 1 66786509 T A - 1 1 T>A A>T +AAGATAGCAAATCCCA-1_17_39848018_C_T_+ AAGATAGCAAATCCCA-1 17 39848018 C T + 1 1 C>T C>T +AACAAGAGTACGATGG-1_1_61861793_T_C_+ AACAAGAGTACGATGG-1 1 61861793 T C + 1 1 T>C T>C +AACAAGAAGTAAACTG-1_17_39847104_C_T_+ AACAAGAAGTAAACTG-1 17 39847104 C T + 1 1 C>T C>T +AAGACTCGTTGCTCGG-1_9_70554624_T_G_+ AAGACTCGTTGCTCGG-1 9 70554624 T G + 1 1 T>G T>G +AACCAACGTGGTATGG-1_17_39848018_C_T_+ AACCAACGTGGTATGG-1 17 39848018 C T + 1 1 C>T C>T +AAATGGACACCCGTAG-1_5_146261106_C_G_+ AAATGGACACCCGTAG-1 5 146261106 C G + 1 1 C>G C>G +AAAGTCCTCGGCTCTT-1_2_5379332_A_T_- AAAGTCCTCGGCTCTT-1 2 5379332 A T - 1 1 A>T T>A +AACCATGAGGTGCATG-1_5_106696538_G_A_- AACCATGAGGTGCATG-1 5 106696538 G A - 1 1 G>A C>T +AACCATGCAGAGTTCT-1_16_57391679_G_T_- AACCATGCAGAGTTCT-1 16 57391679 G T - 1 1 G>T C>A +AAGAACAGTTGGAGGT-1_19_5664746_G_A_- AAGAACAGTTGGAGGT-1 19 5664746 G A - 1 1 G>A C>T +AACAGGGCAAACTCGT-1_16_13946936_C_T_+ AACAGGGCAAACTCGT-1 16 13946936 C T + 1 1 C>T C>T +AACCACAAGAGATCGC-1_15_34441311_G_A_- AACCACAAGAGATCGC-1 15 34441311 G A - 1 1 G>A C>T +AAAGGGCCAGCGACCT-1_7_98703369_C_T_+ AAAGGGCCAGCGACCT-1 7 98703369 C T + 1 1 C>T C>T +AAAGTCCCATGTGGCC-1_7_79365244_C_A_+ AAAGTCCCATGTGGCC-1 7 79365244 C A + 1 1 C>A C>A +AACGGGAAGTTGCCCG-1_6_86980278_G_A_+ AACGGGAAGTTGCCCG-1 6 86980278 G A + 1 1 G>A G>A +AAGACAAAGAGTTCGG-1_19_44306704_G_A_+ AAGACAAAGAGTTCGG-1 19 44306704 G A + 1 1 G>A G>A +AACACACAGTGCACAG-1_13_98113049_A_G_- AACACACAGTGCACAG-1 13 98113049 A G - 1 1 A>G T>C +AAAGTCCAGGAGAGTA-1_4_46724359_T_C_- AAAGTCCAGGAGAGTA-1 4 46724359 T C - 1 1 T>C A>G +AAAGTCCGTGAGTAAT-1_8_15012510_G_C_+ AAAGTCCGTGAGTAAT-1 8 15012510 G C + 1 1 G>C G>C +AAAGGGCCACACTTAG-1_11_23664465_T_C_- AAAGGGCCACACTTAG-1 11 23664465 T C - 1 1 T>C A>G +AACGAAAAGACTACGG-1_14_75848112_C_T_+ AACGAAAAGACTACGG-1 14 75848112 C T + 1 1 C>T C>T +AAACCCAGTGAGCGAT-1_2_17354714_G_A_- AAACCCAGTGAGCGAT-1 2 17354714 G A - 1 1 G>A C>T +AACCCAAAGCAAATGT-1_4_33948761_A_T_+ AACCCAAAGCAAATGT-1 4 33948761 A T + 1 1 A>T A>T +AACCATGAGGTGCATG-1_8_4523741_A_G_+ AACCATGAGGTGCATG-1 8 4523741 A G + 1 1 A>G A>G +AACTTCTAGCAGATAT-1_12_89699202_C_T_+ AACTTCTAGCAGATAT-1 12 89699202 C T + 1 1 C>T C>T +AAAGTCCAGGGCAGGA-1_17_39847607_T_C_- AAAGTCCAGGGCAGGA-1 17 39847607 T C - 1 1 T>C A>G +AAAGTCCCACGCTTAA-1_9_110102606_T_C_- AAAGTCCCACGCTTAA-1 9 110102606 T C - 1 1 T>C A>G +AACCAACCAGTCGCTG-1_X_20699436_C_T_+ AACCAACCAGTCGCTG-1 X 20699436 C T + 1 1 C>T C>T +AACAACCCACACACGC-1_2_158381403_C_T_+ AACAACCCACACACGC-1 2 158381403 C T + 1 1 C>T C>T +AAGAACACATACTGTG-1_11_98326726_G_A_- AAGAACACATACTGTG-1 11 98326726 G A - 1 1 G>A C>T +AAGACTCGTACAGTAA-1_5_146261076_T_C_+ AAGACTCGTACAGTAA-1 5 146261076 T C + 1 1 T>C T>C +AAGATAGGTCATCAGT-1_12_84971225_A_G_+ AAGATAGGTCATCAGT-1 12 84971225 A G + 1 1 A>G A>G +AAATGGAAGTCGGCCT-1_X_130395828_T_G_+ AAATGGAAGTCGGCCT-1 X 130395828 T G + 1 1 T>G T>G +AAAGGGCTCTCACTCG-1_10_100070546_G_A_+ AAAGGGCTCTCACTCG-1 10 100070546 G A + 1 1 G>A G>A +AACACACTCTGCGGAC-1_4_117154796_T_C_- AACACACTCTGCGGAC-1 4 117154796 T C - 1 1 T>C A>G +AAAGGTATCTTTGCGC-1_5_104079353_G_A_- AAAGGTATCTTTGCGC-1 5 104079353 G A - 1 1 G>A C>T +AAGATAGCACGCGTGT-1_7_126795452_A_T_- AAGATAGCACGCGTGT-1 7 126795452 A T - 1 1 A>T T>A +AAGATAGCATGGCTAT-1_17_39848018_C_T_+ AAGATAGCATGGCTAT-1 17 39848018 C T + 2 2 C>T C>T +AACGGGAAGTCCCTAA-1_5_146261080_C_A_+ AACGGGAAGTCCCTAA-1 5 146261080 C A + 1 1 C>A C>A +AACCTGAAGGTAGACC-1_1_67000645_G_A_- AACCTGAAGGTAGACC-1 1 67000645 G A - 1 1 G>A C>T +AACCAACGTTTCGTGA-1_10_32571551_G_C_- AACCAACGTTTCGTGA-1 10 32571551 G C - 1 1 G>C C>G +AAAGTCCCAACCAGAG-1_16_57391677_C_G_- AAAGTCCCAACCAGAG-1 16 57391677 C G - 1 1 C>G G>C +AACAACCCAGACGGAT-1_4_94965544_G_C_- AACAACCCAGACGGAT-1 4 94965544 G C - 1 1 G>C C>G +AACGAAACAGGAATAT-1_9_3017994_G_A_- AACGAAACAGGAATAT-1 9 3017994 G A - 1 1 G>A C>T +AAAGTGAGTTCTCCCA-1_1_173862031_A_G_- AAAGTGAGTTCTCCCA-1 1 173862031 A G - 1 1 A>G T>C +AACCTTTAGACCATAA-1_6_115153446_G_A_+ AACCTTTAGACCATAA-1 6 115153446 G A + 1 1 G>A G>A +AAGAACACAACTGATC-1_8_94179874_C_T_+ AAGAACACAACTGATC-1 8 94179874 C T + 1 1 C>T C>T +AACTTCTCACTAACGT-1_15_88956136_T_G_- AACTTCTCACTAACGT-1 15 88956136 T G - 1 1 T>G A>C +AAGACTCGTGGTACAG-1_3_40790317_C_T_+ AAGACTCGTGGTACAG-1 3 40790317 C T + 1 1 C>T C>T +AACTTCTAGCAGATAT-1_5_36630622_C_T_- AACTTCTAGCAGATAT-1 5 36630622 C T - 1 1 C>T G>A +AACAAGATCTAGGCCG-1_17_39847458_A_G_- AACAAGATCTAGGCCG-1 17 39847458 A G - 1 1 A>G T>C +AACGTCAGTGCAACAG-1_17_39847426_T_C_+ AACGTCAGTGCAACAG-1 17 39847426 T C + 1 1 T>C T>C +AACCCAAAGCAAATGT-1_2_4612998_A_G_+ AACCCAAAGCAAATGT-1 2 4612998 A G + 1 1 A>G A>G +AACCACATCTTACACT-1_14_23756922_A_T_- AACCACATCTTACACT-1 14 23756922 A T - 1 1 A>T T>A +AAGACAAAGGATACAT-1_MT_9274_T_A_+ AAGACAAAGGATACAT-1 MT 9274 T A + 1 2 T>A T>A +AAAGAACCAACTTCTT-1_2_144142662_A_G_- AAAGAACCAACTTCTT-1 2 144142662 A G - 1 1 A>G T>C +AACGTCATCTGGCTGG-1_12_110691292_C_T_- AACGTCATCTGGCTGG-1 12 110691292 C T - 1 1 C>T G>A +AAGACAAGTCTTCATT-1_6_92835717_T_C_- AAGACAAGTCTTCATT-1 6 92835717 T C - 1 1 T>C A>G +AAGATAGAGCATGAAT-1_10_127621031_T_G_- AAGATAGAGCATGAAT-1 10 127621031 T G - 1 1 T>G A>C +AACCACACAGAGAAAG-1_3_122267687_C_A_+ AACCACACAGAGAAAG-1 3 122267687 C A + 1 1 C>A C>A +AACAGGGTCGGTCGGT-1_13_41008067_C_T_+ AACAGGGTCGGTCGGT-1 13 41008067 C T + 1 1 C>T C>T +AACAAAGCAATCAGCT-1_9_40805194_G_T_+ AACAAAGCAATCAGCT-1 9 40805194 G T + 1 1 G>T G>T +AAGATAGGTCATCAGT-1_18_43585799_G_A_- AAGATAGGTCATCAGT-1 18 43585799 G A - 1 1 G>A C>T +AAAGTCCCACAAATGA-1_15_77993655_T_A_- AAAGTCCCACAAATGA-1 15 77993655 T A - 1 1 T>A A>T +AACGTCACACTCCTTG-1_19_5802603_C_T_- AACGTCACACTCCTTG-1 19 5802603 C T - 1 4 C>T G>A +AAGAACATCATAGGCT-1_6_143208357_C_T_+ AAGAACATCATAGGCT-1 6 143208357 C T + 1 1 C>T C>T +AAAGGTATCCCTCTCC-1_9_3000588_G_A_- AAAGGTATCCCTCTCC-1 9 3000588 G A - 1 1 G>A C>T +AAGATAGGTCTCACAA-1_16_57391683_T_A_- AAGATAGGTCTCACAA-1 16 57391683 T A - 1 1 T>A A>T +AAAGGATGTGCTCGTG-1_8_123102683_A_G_+ AAAGGATGTGCTCGTG-1 8 123102683 A G + 1 1 A>G A>G +AACCACATCCGTACGG-1_14_64746953_G_T_+ AACCACATCCGTACGG-1 14 64746953 G T + 1 1 G>T G>T +AACAGGGCAAACTCGT-1_19_5802608_T_A_- AACAGGGCAAACTCGT-1 19 5802608 T A - 1 6 T>A A>T +AACAAGATCTAGGCCG-1_17_39847426_T_C_- AACAAGATCTAGGCCG-1 17 39847426 T C - 1 1 T>C A>G +AAATGGACAAGCGCAA-1_11_62553003_T_C_+ AAATGGACAAGCGCAA-1 11 62553003 T C + 1 1 T>C T>C +AACACACTCGCTCTAC-1_9_7819373_C_T_- AACACACTCGCTCTAC-1 9 7819373 C T - 1 1 C>T G>A +AACAACCGTATGTCTG-1_16_17651309_C_A_- AACAACCGTATGTCTG-1 16 17651309 C A - 1 1 C>A G>T +AAGACAAAGAGTTCGG-1_16_43619130_C_G_+ AAGACAAAGAGTTCGG-1 16 43619130 C G + 1 1 C>G C>G +AACCAACTCGGAAGGT-1_11_61518630_C_T_- AACCAACTCGGAAGGT-1 11 61518630 C T - 1 1 C>T G>A +AACCACAGTGTTCCTC-1_19_21392296_A_T_- AACCACAGTGTTCCTC-1 19 21392296 A T - 1 1 A>T T>A +AAGACTCGTTGCTCGG-1_17_39848018_C_T_+ AAGACTCGTTGCTCGG-1 17 39848018 C T + 1 1 C>T C>T +AACCTGACAGCAGTGA-1_3_152971032_G_A_- AACCTGACAGCAGTGA-1 3 152971032 G A - 1 1 G>A C>T +AAAGGTAAGACTTCAC-1_X_42109497_C_A_+ AAAGGTAAGACTTCAC-1 X 42109497 C A + 1 1 C>A C>A +AACACACTCTGCGGAC-1_MT_8109_C_T_+ AACACACTCTGCGGAC-1 MT 8109 C T + 1 1 C>T C>T +AAAGGATAGGAGCAAA-1_18_35591158_C_T_+ AAAGGATAGGAGCAAA-1 18 35591158 C T + 1 1 C>T C>T +AACGTCAAGAGAAGGT-1_14_19278196_T_G_+ AACGTCAAGAGAAGGT-1 14 19278196 T G + 1 1 T>G T>G +AAAGGTATCTCTGACC-1_17_39846993_A_G_+ AAAGGTATCTCTGACC-1 17 39846993 A G + 1 1 A>G A>G +AAGAACATCCAAAGGG-1_10_7716348_C_T_+ AAGAACATCCAAAGGG-1 10 7716348 C T + 1 1 C>T C>T +AAACCCAGTATGTCCA-1_12_99645645_A_G_+ AAACCCAGTATGTCCA-1 12 99645645 A G + 1 1 A>G A>G +AACGTCACAAGAATGT-1_7_123193744_T_A_+ AACGTCACAAGAATGT-1 7 123193744 T A + 1 1 T>A T>A +AAGAACAAGTCTCTGA-1_9_3000538_G_T_- AAGAACAAGTCTCTGA-1 9 3000538 G T - 1 1 G>T C>A +AACCTTTCAGACCTGC-1_13_20606316_T_A_+ AACCTTTCAGACCTGC-1 13 20606316 T A + 1 1 T>A T>A +AACCTTTCAGACCTGC-1_7_28822114_G_A_+ AACCTTTCAGACCTGC-1 7 28822114 G A + 1 1 G>A G>A +AAGACTCGTTGCTCGG-1_16_7381131_T_A_+ AAGACTCGTTGCTCGG-1 16 7381131 T A + 1 1 T>A T>A +AACGGGACAAACTCTG-1_2_181306631_G_A_- AACGGGACAAACTCTG-1 2 181306631 G A - 1 1 G>A C>T +AACAAGACATCCGTTC-1_12_53272987_C_G_+ AACAAGACATCCGTTC-1 12 53272987 C G + 1 1 C>G C>G +AAAGAACTCTCACCCA-1_10_77589710_A_C_+ AAAGAACTCTCACCCA-1 10 77589710 A C + 1 1 A>C A>C +AACACACCAGACCAGA-1_9_96471109_C_A_- AACACACCAGACCAGA-1 9 96471109 C A - 1 1 C>A G>T +AAACGAAGTGATGTAA-1_6_83180942_G_T_+ AAACGAAGTGATGTAA-1 6 83180942 G T + 1 1 G>T G>T +AAAGTCCCAGTAGAAT-1_17_39848018_C_T_+ AAAGTCCCAGTAGAAT-1 17 39848018 C T + 1 1 C>T C>T +AAAGTCCTCCGATGCG-1_15_35935406_A_G_- AAAGTCCTCCGATGCG-1 15 35935406 A G - 1 1 A>G T>C +AACCAACTCCCAAGCG-1_5_146261113_T_C_+ AACCAACTCCCAAGCG-1 5 146261113 T C + 1 1 T>C T>C +AACGGGAAGTTGCCCG-1_X_95049121_G_A_- AACGGGAAGTTGCCCG-1 X 95049121 G A - 1 1 G>A C>T +AACCTGACATCGTCCT-1_6_50564482_T_C_- AACCTGACATCGTCCT-1 6 50564482 T C - 1 1 T>C A>G +AAATGGATCGCTAATG-1_7_81769168_C_T_+ AAATGGATCGCTAATG-1 7 81769168 C T + 1 1 C>T C>T +AAAGGGCGTACCGTCG-1_3_152224730_G_A_+ AAAGGGCGTACCGTCG-1 3 152224730 G A + 1 1 G>A G>A +AACTTCTAGAGACAAG-1_18_45685562_G_A_+ AACTTCTAGAGACAAG-1 18 45685562 G A + 1 1 G>A G>A +AAAGTCCCATGTGGCC-1_6_141843442_C_T_- AAAGTCCCATGTGGCC-1 6 141843442 C T - 1 1 C>T G>A +AACTTCTTCTTCACGC-1_8_46207357_C_A_- AACTTCTTCTTCACGC-1 8 46207357 C A - 1 1 C>A G>T +AAAGTCCGTGTTCAGT-1_17_39847607_T_C_+ AAAGTCCGTGTTCAGT-1 17 39847607 T C + 1 1 T>C T>C +AACAACCCATTAAAGG-1_2_113776407_G_A_- AACAACCCATTAAAGG-1 2 113776407 G A - 1 1 G>A C>T +AACTTCTCACACGTGC-1_1_51097922_A_C_+ AACTTCTCACACGTGC-1 1 51097922 A C + 1 1 A>C A>C +AACACACAGTGAGTGC-1_11_77711993_T_A_+ AACACACAGTGAGTGC-1 11 77711993 T A + 1 1 T>A T>A +AACAACCAGGGCTGAT-1_16_57391454_T_C_- AACAACCAGGGCTGAT-1 16 57391454 T C - 1 1 T>C A>G +AAAGAACGTCCTCATC-1_11_24072366_T_C_- AAAGAACGTCCTCATC-1 11 24072366 T C - 1 1 T>C A>G +AACCTTTAGGGTATAT-1_9_3020466_T_C_- AACCTTTAGGGTATAT-1 9 3020466 T C - 1 1 T>C A>G +AACAAAGCAATCAGCT-1_9_40805192_T_A_+ AACAAAGCAATCAGCT-1 9 40805192 T A + 1 1 T>A T>A +AACCAACAGCCAAGGT-1_9_3035201_G_T_- AACCAACAGCCAAGGT-1 9 3035201 G T - 1 1 G>T C>A +AACAAAGCACGGCACT-1_4_43032491_G_T_- AACAAAGCACGGCACT-1 4 43032491 G T - 1 1 G>T C>A +AACGTCACAACCAGAG-1_13_44869614_A_G_+ AACGTCACAACCAGAG-1 13 44869614 A G + 1 1 A>G A>G +AACAACCGTCATCGGC-1_8_70895922_G_A_- AACAACCGTCATCGGC-1 8 70895922 G A - 1 1 G>A C>T +AAAGGTAAGGCATCTT-1_16_57391688_T_G_- AAAGGTAAGGCATCTT-1 16 57391688 T G - 1 1 T>G A>C +AACCACACAGCTGAGA-1_17_39847435_A_G_- AACCACACAGCTGAGA-1 17 39847435 A G - 1 1 A>G T>C +AAGAACATCAGCCTTC-1_1_34812686_C_T_+ AAGAACATCAGCCTTC-1 1 34812686 C T + 1 1 C>T C>T +AAATGGATCCCTTGTG-1_8_105716314_G_A_- AAATGGATCCCTTGTG-1 8 105716314 G A - 1 1 G>A C>T +AACACACCATAACGGG-1_1_11299545_T_C_+ AACACACCATAACGGG-1 1 11299545 T C + 1 1 T>C T>C +AAACGAACATGCCGAC-1_5_124395899_C_T_- AAACGAACATGCCGAC-1 5 124395899 C T - 1 1 C>T G>A +AACGGGAAGTTGCCCG-1_13_13778702_C_T_+ AACGGGAAGTTGCCCG-1 13 13778702 C T + 1 1 C>T C>T +AAGATAGGTACGCGTC-1_7_28778444_C_A_+ AAGATAGGTACGCGTC-1 7 28778444 C A + 1 1 C>A C>A +AACCTGACATCGTCCT-1_5_90228817_G_A_- AACCTGACATCGTCCT-1 5 90228817 G A - 1 1 G>A C>T +AAGACTCAGAGGGTCT-1_4_155649936_G_A_+ AAGACTCAGAGGGTCT-1 4 155649936 G A + 1 1 G>A G>A +AAAGTCCGTGAGTAAT-1_17_39847458_A_G_- AAAGTCCGTGAGTAAT-1 17 39847458 A G - 1 1 A>G T>C +AAAGAACAGTCGCGAA-1_7_144914517_A_G_+ AAAGAACAGTCGCGAA-1 7 144914517 A G + 1 1 A>G A>G +AACAACCAGTTACTCG-1_12_84374017_G_A_- AACAACCAGTTACTCG-1 12 84374017 G A - 1 1 G>A C>T +AACAAAGTCACGATAC-1_2_112363186_G_A_- AACAAAGTCACGATAC-1 2 112363186 G A - 1 1 G>A C>T +AAGACTCGTGGTACAG-1_7_112354988_T_G_+ AAGACTCGTGGTACAG-1 7 112354988 T G + 1 1 T>G T>G +AACTTCTCATGAATAG-1_9_3004736_T_C_- AACTTCTCATGAATAG-1 9 3004736 T C - 1 1 T>C A>G +AACAAAGCAAGCAATA-1_9_3024132_G_A_- AACAAAGCAAGCAATA-1 9 3024132 G A - 1 1 G>A C>T +AACAAGAAGTAAACTG-1_1_156366486_A_C_+ AACAAGAAGTAAACTG-1 1 156366486 A C + 1 1 A>C A>C +AAAGAACTCAATCAGC-1_18_67440256_A_G_- AAAGAACTCAATCAGC-1 18 67440256 A G - 1 1 A>G T>C +AACCAACAGTATCTGC-1_9_123461940_T_G_+ AACCAACAGTATCTGC-1 9 123461940 T G + 1 1 T>G T>G +AAAGAACTCTCACCCA-1_2_131004530_A_T_+ AAAGAACTCTCACCCA-1 2 131004530 A T + 1 1 A>T A>T +AACCACACAACAACAA-1_6_125460367_T_A_- AACCACACAACAACAA-1 6 125460367 T A - 1 1 T>A A>T +AAGATAGGTCATCAGT-1_15_25363362_A_T_- AAGATAGGTCATCAGT-1 15 25363362 A T - 1 1 A>T T>A +AACAGGGCAAACTCGT-1_8_22429475_T_A_+ AACAGGGCAAACTCGT-1 8 22429475 T A + 1 1 T>A T>A +AACCACAAGCTTTGTG-1_9_64185893_G_A_- AACCACAAGCTTTGTG-1 9 64185893 G A - 1 1 G>A C>T +AAATGGAAGCCGTCGT-1_9_123461940_T_G_+ AAATGGAAGCCGTCGT-1 9 123461940 T G + 1 1 T>G T>G +AAAGAACAGGGTATAT-1_17_39848100_A_T_+ AAAGAACAGGGTATAT-1 17 39848100 A T + 1 1 A>T A>T +AACAAAGTCATTTCCA-1_X_102185514_C_T_- AACAAAGTCATTTCCA-1 X 102185514 C T - 1 1 C>T G>A +AAGACAAGTACTGACT-1_12_29611424_C_T_+ AAGACAAGTACTGACT-1 12 29611424 C T + 1 1 C>T C>T +AAGACAAGTACTGACT-1_9_110262348_G_A_+ AAGACAAGTACTGACT-1 9 110262348 G A + 1 1 G>A G>A +AACCAACCAATCAAGA-1_8_94153972_G_A_+ AACCAACCAATCAAGA-1 8 94153972 G A + 1 1 G>A G>A +AAGACTCGTGGTACAG-1_19_36893403_C_T_+ AAGACTCGTGGTACAG-1 19 36893403 C T + 1 1 C>T C>T +AACAAGAGTACGATGG-1_17_39847290_C_G_- AACAAGAGTACGATGG-1 17 39847290 C G - 1 2 C>G G>C +AACTTCTAGCAGATAT-1_5_49441012_C_A_- AACTTCTAGCAGATAT-1 5 49441012 C A - 1 1 C>A G>T +AAGACAATCGCGTCGA-1_17_39848018_C_T_+ AAGACAATCGCGTCGA-1 17 39848018 C T + 1 1 C>T C>T +AAAGGGCCATGTCTAG-1_15_57871584_A_T_- AAAGGGCCATGTCTAG-1 15 57871584 A T - 1 1 A>T T>A +AAGACTCGTTGCTCGG-1_9_107760004_T_C_- AAGACTCGTTGCTCGG-1 9 107760004 T C - 1 1 T>C A>G +AAAGGGCAGGCATGCA-1_17_39848018_C_T_+ AAAGGGCAGGCATGCA-1 17 39848018 C T + 1 1 C>T C>T +AAAGGATGTTTCGGCG-1_17_39847458_A_G_+ AAAGGATGTTTCGGCG-1 17 39847458 A G + 1 1 A>G A>G +AAACGAACATGCCGAC-1_18_65817554_G_C_+ AAACGAACATGCCGAC-1 18 65817554 G C + 1 1 G>C G>C +AACTTCTCACACGTGC-1_11_49245232_A_C_+ AACTTCTCACACGTGC-1 11 49245232 A C + 1 1 A>C A>C +AAAGGGCCAACCAATC-1_13_97190542_G_C_- AAAGGGCCAACCAATC-1 13 97190542 G C - 1 1 G>C C>G +AAGATAGAGCTTGTGT-1_11_22831865_A_T_- AAGATAGAGCTTGTGT-1 11 22831865 A T - 1 1 A>T T>A +AAACCCAGTATGTCCA-1_16_57391677_C_G_- AAACCCAGTATGTCCA-1 16 57391677 C G - 1 1 C>G G>C +AACAACCCATGTAACC-1_9_123461940_T_G_+ AACAACCCATGTAACC-1 9 123461940 T G + 1 1 T>G T>G +AAACCCACACCGTGGT-1_2_32788242_G_A_- AAACCCACACCGTGGT-1 2 32788242 G A - 1 1 G>A C>T +AAGAACAGTAAGATAC-1_19_11774649_C_T_+ AAGAACAGTAAGATAC-1 19 11774649 C T + 1 1 C>T C>T +AACACACCAGACCAGA-1_7_100644008_C_T_- AACACACCAGACCAGA-1 7 100644008 C T - 1 1 C>T G>A +AACCACAAGCTTTGTG-1_4_126743969_G_A_- AACCACAAGCTTTGTG-1 4 126743969 G A - 1 1 G>A C>T +AAAGGGCCAGACAAGC-1_17_39847403_T_G_+ AAAGGGCCAGACAAGC-1 17 39847403 T G + 1 1 T>G T>G +AAAGGGCCAACCAATC-1_16_57391679_G_T_- AAAGGGCCAACCAATC-1 16 57391679 G T - 1 1 G>T C>A +AACGAAACAACTACGT-1_7_44490278_G_A_- AACGAAACAACTACGT-1 7 44490278 G A - 1 1 G>A C>T +AACTTCTAGTGATGGC-1_1_68907587_T_C_- AACTTCTAGTGATGGC-1 1 68907587 T C - 1 1 T>C A>G +AACCAACTCGATGGAG-1_4_132492115_C_T_- AACCAACTCGATGGAG-1 4 132492115 C T - 1 1 C>T G>A +AAGACTCAGAGGGTCT-1_4_155649886_G_T_+ AAGACTCAGAGGGTCT-1 4 155649886 G T + 1 1 G>T G>T +AACCAACAGTAGGATT-1_3_107470076_T_C_- AACCAACAGTAGGATT-1 3 107470076 T C - 1 1 T>C A>G +AACCTGAAGGTAGACC-1_1_164437267_A_G_+ AACCTGAAGGTAGACC-1 1 164437267 A G + 1 1 A>G A>G +AACAGGGCAGATTTCG-1_X_36798634_T_C_+ AACAGGGCAGATTTCG-1 X 36798634 T C + 1 1 T>C T>C +AACGTCACACTCCTTG-1_17_84184059_C_A_- AACGTCACACTCCTTG-1 17 84184059 C A - 1 1 C>A G>T +AACAACCCAGACGGAT-1_8_9631233_G_A_- AACAACCCAGACGGAT-1 8 9631233 G A - 1 1 G>A C>T +AAGACTCGTGGTACAG-1_5_112213386_A_T_- AAGACTCGTGGTACAG-1 5 112213386 A T - 1 1 A>T T>A +AAGACAAAGCGCCTTG-1_4_132128881_T_C_- AAGACAAAGCGCCTTG-1 4 132128881 T C - 1 1 T>C A>G +AACTTCTAGCAGATAT-1_16_59480298_T_C_+ AACTTCTAGCAGATAT-1 16 59480298 T C + 1 1 T>C T>C +AAAGTCCGTACAAGTA-1_2_90901868_T_C_- AAAGTCCGTACAAGTA-1 2 90901868 T C - 1 1 T>C A>G +AACGGGAGTTGCTCGG-1_1_87049934_A_G_+ AACGGGAGTTGCTCGG-1 1 87049934 A G + 1 1 A>G A>G +AAGACTCGTGTCTTGA-1_19_48804432_A_G_+ AAGACTCGTGTCTTGA-1 19 48804432 A G + 1 1 A>G A>G +AAGACTCGTGGTACAG-1_11_5060289_T_C_+ AAGACTCGTGGTACAG-1 11 5060289 T C + 1 1 T>C T>C +AACAGGGCAAACTCGT-1_19_5802609_C_A_- AACAGGGCAAACTCGT-1 19 5802609 C A - 1 6 C>A G>T +AAAGGATAGATGAAGG-1_2_5293721_T_A_- AAAGGATAGATGAAGG-1 2 5293721 T A - 1 1 T>A A>T +AAAGTCCTCCGATGCG-1_10_9828336_C_T_- AAAGTCCTCCGATGCG-1 10 9828336 C T - 1 1 C>T G>A +AAATGGAAGCAGATAT-1_13_73938379_G_A_+ AAATGGAAGCAGATAT-1 13 73938379 G A + 1 1 G>A G>A +AAGAACAGTAGGACTG-1_7_4134001_T_A_+ AAGAACAGTAGGACTG-1 7 4134001 T A + 1 1 T>A T>A +AAAGTCCAGTGGGAAA-1_1_72712218_C_T_+ AAAGTCCAGTGGGAAA-1 1 72712218 C T + 1 1 C>T C>T +AAACGAAAGTGGACTG-1_17_83512028_G_A_- AAACGAAAGTGGACTG-1 17 83512028 G A - 1 1 G>A C>T +AACACACAGGATCACG-1_MT_3641_A_T_+ AACACACAGGATCACG-1 MT 3641 A T + 1 1 A>T A>T +AAACGCTAGTAGCATA-1_12_90019974_A_G_+ AAACGCTAGTAGCATA-1 12 90019974 A G + 1 1 A>G A>G +AAACGAAGTGCTCTCT-1_11_115418514_A_T_- AAACGAAGTGCTCTCT-1 11 115418514 A T - 1 1 A>T T>A +AACACACTCTGCGGAC-1_11_102887535_C_T_- AACACACTCTGCGGAC-1 11 102887535 C T - 1 3 C>T G>A +AAAGGATCACGACAGA-1_5_121151916_A_G_- AAAGGATCACGACAGA-1 5 121151916 A G - 1 1 A>G T>C +AACGGGACAGTTGTTG-1_9_16102721_G_A_- AACGGGACAGTTGTTG-1 9 16102721 G A - 1 1 G>A C>T +AACCTGATCGAGAGAC-1_9_123461940_T_G_+ AACCTGATCGAGAGAC-1 9 123461940 T G + 1 1 T>G T>G +AACTTCTAGGGATCTG-1_19_5107938_T_G_- AACTTCTAGGGATCTG-1 19 5107938 T G - 1 1 T>G A>C +AAACGAAGTGTTTACG-1_17_5133230_C_A_+ AAACGAAGTGTTTACG-1 17 5133230 C A + 1 1 C>A C>A +AACCACAAGCTTTGTG-1_X_102185592_G_A_- AACCACAAGCTTTGTG-1 X 102185592 G A - 1 1 G>A C>T +AACAAGAGTAGAATGT-1_9_78478509_G_A_- AACAAGAGTAGAATGT-1 9 78478509 G A - 1 1 G>A C>T +AAGATAGAGACAGCGT-1_9_107949638_C_T_+ AAGATAGAGACAGCGT-1 9 107949638 C T + 1 1 C>T C>T +AACTTCTAGAGAACCC-1_9_3024450_G_T_- AACTTCTAGAGAACCC-1 9 3024450 G T - 1 1 G>T C>A +AAGATAGAGCCAACCC-1_15_6756762_C_G_+ AAGATAGAGCCAACCC-1 15 6756762 C G + 1 1 C>G C>G +AAATGGACACCCGTAG-1_6_112718121_C_T_- AAATGGACACCCGTAG-1 6 112718121 C T - 1 1 C>T G>A +AAGAACAAGCTCGACC-1_8_121881290_A_C_- AAGAACAAGCTCGACC-1 8 121881290 A C - 1 1 A>C T>G +AACCACAAGCTTTGTG-1_7_128779200_G_A_+ AACCACAAGCTTTGTG-1 7 128779200 G A + 1 1 G>A G>A +AACCTTTCAGACCTGC-1_19_8834068_T_A_+ AACCTTTCAGACCTGC-1 19 8834068 T A + 1 1 T>A T>A +AAGACTCCAGGCGAAT-1_10_78171078_C_A_- AAGACTCCAGGCGAAT-1 10 78171078 C A - 1 1 C>A G>T +AAGACTCCAACACAGG-1_19_29715490_C_T_- AAGACTCCAACACAGG-1 19 29715490 C T - 1 1 C>T G>A +AACAACCCACACACGC-1_16_57391454_T_C_- AACAACCCACACACGC-1 16 57391454 T C - 1 1 T>C A>G +AAAGTGACAAATACAG-1_2_5379332_A_T_- AAAGTGACAAATACAG-1 2 5379332 A T - 1 1 A>T T>A +AACACACTCTGCGGAC-1_6_77744195_C_T_- AACACACTCTGCGGAC-1 6 77744195 C T - 1 1 C>T G>A +AACGTCATCTATACGG-1_8_95714630_C_T_+ AACGTCATCTATACGG-1 8 95714630 C T + 1 1 C>T C>T +AACCTTTGTGGTCAAG-1_19_5490583_C_T_+ AACCTTTGTGGTCAAG-1 19 5490583 C T + 1 1 C>T C>T +AAACGCTGTAGAGGAA-1_12_100206443_C_T_+ AAACGCTGTAGAGGAA-1 12 100206443 C T + 1 1 C>T C>T +AACGAAACAACTACGT-1_9_64185878_G_A_- AACGAAACAACTACGT-1 9 64185878 G A - 1 1 G>A C>T +AACCATGGTCATACCA-1_6_82647046_T_G_- AACCATGGTCATACCA-1 6 82647046 T G - 1 1 T>G A>C +AACCAACGTCCCTGTT-1_X_136836297_C_T_+ AACCAACGTCCCTGTT-1 X 136836297 C T + 1 2 C>T C>T +AAACCCACAGCAGTCC-1_12_72652326_C_A_- AAACCCACAGCAGTCC-1 12 72652326 C A - 1 1 C>A G>T +AAGATAGGTCATCAGT-1_5_49114849_G_A_- AAGATAGGTCATCAGT-1 5 49114849 G A - 1 1 G>A C>T +AACCATGCAGGAAGTC-1_13_49262586_A_G_- AACCATGCAGGAAGTC-1 13 49262586 A G - 1 1 A>G T>C +AAAGAACAGAATACAC-1_17_24721282_C_T_+ AAAGAACAGAATACAC-1 17 24721282 C T + 1 1 C>T C>T +AACCTGACATCATCCC-1_9_107665929_G_T_- AACCTGACATCATCCC-1 9 107665929 G T - 1 1 G>T C>A +AACACACTCTGCGGAC-1_1_6752952_T_C_+ AACACACTCTGCGGAC-1 1 6752952 T C + 1 1 T>C T>C +AAAGGATCATTCAGGT-1_6_49258849_C_G_- AAAGGATCATTCAGGT-1 6 49258849 C G - 1 1 C>G G>C +AAACGAAAGGCTTTCA-1_1_158691626_C_T_+ AAACGAAAGGCTTTCA-1 1 158691626 C T + 1 1 C>T C>T +AACAACCCAGACGGAT-1_10_100558172_T_C_+ AACAACCCAGACGGAT-1 10 100558172 T C + 1 1 T>C T>C +AAAGAACAGAGGTTAT-1_6_91758627_G_T_+ AAAGAACAGAGGTTAT-1 6 91758627 G T + 1 1 G>T G>T +AAAGGGCCATGTCTAG-1_5_14589936_G_A_+ AAAGGGCCATGTCTAG-1 5 14589936 G A + 1 1 G>A G>A +AACAAAGCAATCAGCT-1_1_38253652_C_T_- AACAAAGCAATCAGCT-1 1 38253652 C T - 1 1 C>T G>A +AAACGAAAGCGAACTG-1_4_123194654_C_T_+ AAACGAAAGCGAACTG-1 4 123194654 C T + 1 1 C>T C>T +AAACCCAGTGGTAATA-1_5_122456697_G_A_- AAACCCAGTGGTAATA-1 5 122456697 G A - 1 1 G>A C>T +AACAAAGAGCCTATTG-1_17_39847403_T_G_+ AACAAAGAGCCTATTG-1 17 39847403 T G + 1 1 T>G T>G +AACGTCAAGCAAGTCG-1_17_39848018_C_T_+ AACGTCAAGCAAGTCG-1 17 39848018 C T + 1 1 C>T C>T +AACCCAAGTATCGATC-1_2_140026872_T_C_- AACCCAAGTATCGATC-1 2 140026872 T C - 1 1 T>C A>G +AACGTCACAAGAATGT-1_7_123193777_T_G_+ AACGTCACAAGAATGT-1 7 123193777 T G + 1 1 T>G T>G +AAACGCTGTCATGGCC-1_9_3035171_A_C_- AAACGCTGTCATGGCC-1 9 3035171 A C - 1 1 A>C T>G +AACCAACGTCCCTGTT-1_10_121993910_T_A_- AACCAACGTCCCTGTT-1 10 121993910 T A - 1 1 T>A A>T +AACAAGAAGGTTCAGG-1_5_146261113_T_C_+ AACAAGAAGGTTCAGG-1 5 146261113 T C + 1 1 T>C T>C +AACCATGTCCTCGCAT-1_6_12315134_G_A_- AACCATGTCCTCGCAT-1 6 12315134 G A - 1 1 G>A C>T +AAGAACAAGCTCGACC-1_2_144541781_G_A_+ AAGAACAAGCTCGACC-1 2 144541781 G A + 1 1 G>A G>A +AACAGGGAGTGCTCAT-1_11_6406008_A_G_+ AACAGGGAGTGCTCAT-1 11 6406008 A G + 1 1 A>G A>G +AACCTTTTCGCTCCTA-1_17_39847322_A_T_+ AACCTTTTCGCTCCTA-1 17 39847322 A T + 1 1 A>T A>T +AAAGGGCTCTCACTCG-1_9_44409983_G_A_+ AAAGGGCTCTCACTCG-1 9 44409983 G A + 1 1 G>A G>A +AAACGAAAGTCGCGAA-1_5_52860716_A_G_+ AAACGAAAGTCGCGAA-1 5 52860716 A G + 1 1 A>G A>G +AAGAACACAGGGAATC-1_11_78290423_A_G_+ AAGAACACAGGGAATC-1 11 78290423 A G + 1 1 A>G A>G +AACGTCACACTCCTTG-1_17_39847138_G_A_- AACGTCACACTCCTTG-1 17 39847138 G A - 1 3 G>A C>T +AAAGTCCAGTCGGCCT-1_7_137467952_A_T_+ AAAGTCCAGTCGGCCT-1 7 137467952 A T + 1 1 A>T A>T +AAATGGACATAATCCG-1_17_39848074_A_G_+ AAATGGACATAATCCG-1 17 39848074 A G + 1 1 A>G A>G +AAATGGAGTACCGGAA-1_7_65526160_A_T_- AAATGGAGTACCGGAA-1 7 65526160 A T - 1 1 A>T T>A +AACGGGAGTGTCCAAT-1_14_49012524_G_A_- AACGGGAGTGTCCAAT-1 14 49012524 G A - 1 1 G>A C>T +AAGATAGAGCATGAAT-1_10_127621024_T_G_- AAGATAGAGCATGAAT-1 10 127621024 T G - 1 1 T>G A>C +AACGTCAAGCGAGGAG-1_9_70554621_A_C_+ AACGTCAAGCGAGGAG-1 9 70554621 A C + 1 1 A>C A>C +AAATGGAAGTTCAACC-1_MT_9242_A_G_+ AAATGGAAGTTCAACC-1 MT 9242 A G + 1 1 A>G A>G +AACCACAAGCTTTGTG-1_8_111952854_C_T_+ AACCACAAGCTTTGTG-1 8 111952854 C T + 1 1 C>T C>T +AACTTCTCAGAATTCC-1_2_30400368_C_G_+ AACTTCTCAGAATTCC-1 2 30400368 C G + 1 1 C>G C>G +AACGAAAAGAATCGTA-1_9_3035212_T_A_- AACGAAAAGAATCGTA-1 9 3035212 T A - 1 1 T>A A>T +AAACCCATCGGATAAA-1_7_105558605_G_C_- AAACCCATCGGATAAA-1 7 105558605 G C - 1 1 G>C C>G +AAGACAAGTCGAATTC-1_11_101091246_C_T_+ AAGACAAGTCGAATTC-1 11 101091246 C T + 1 1 C>T C>T +AAAGGATAGGTTCCAT-1_17_39846983_C_A_+ AAAGGATAGGTTCCAT-1 17 39846983 C A + 1 1 C>A C>A +AACACACCACAGTGTT-1_17_39848018_C_T_+ AACACACCACAGTGTT-1 17 39848018 C T + 1 1 C>T C>T +AAAGGGCAGTAAGCAT-1_11_52855686_C_T_+ AAAGGGCAGTAAGCAT-1 11 52855686 C T + 1 1 C>T C>T +AAACGCTTCCACGTAA-1_17_39847607_T_C_+ AAACGCTTCCACGTAA-1 17 39847607 T C + 1 1 T>C T>C +AACTTCTAGAACAGGA-1_15_64382271_G_A_- AACTTCTAGAACAGGA-1 15 64382271 G A - 1 1 G>A C>T +AAGACTCAGAAATTCG-1_16_57391680_C_T_- AAGACTCAGAAATTCG-1 16 57391680 C T - 1 1 C>T G>A +AACGAAAAGCCGAACA-1_7_25365752_C_T_+ AACGAAAAGCCGAACA-1 7 25365752 C T + 1 1 C>T C>T +AACGTCAAGCTAAACA-1_16_70341568_A_C_+ AACGTCAAGCTAAACA-1 16 70341568 A C + 1 1 A>C A>C +AAACGAAAGGCTTTCA-1_15_98570261_T_G_- AAACGAAAGGCTTTCA-1 15 98570261 T G - 1 1 T>G A>C +AACTTCTAGAGTCCGA-1_10_122841509_C_T_+ AACTTCTAGAGTCCGA-1 10 122841509 C T + 1 1 C>T C>T +AAGACAAGTCGAATTC-1_9_37544708_G_A_- AAGACAAGTCGAATTC-1 9 37544708 G A - 1 1 G>A C>T +AAAGTCCAGTCGGCCT-1_11_98768868_C_T_+ AAAGTCCAGTCGGCCT-1 11 98768868 C T + 1 1 C>T C>T +AACAACCGTATGTCTG-1_X_147129680_A_G_+ AACAACCGTATGTCTG-1 X 147129680 A G + 1 1 A>G A>G +AAACCCACAGCTGTGC-1_7_25532480_A_G_+ AAACCCACAGCTGTGC-1 7 25532480 A G + 1 1 A>G A>G +AACCAACTCGCCCAGA-1_10_57515838_A_G_- AACCAACTCGCCCAGA-1 10 57515838 A G - 1 1 A>G T>C +AAACCCATCGGATAAA-1_15_75564963_T_A_- AAACCCATCGGATAAA-1 15 75564963 T A - 1 1 T>A A>T +AACGTCATCTACTTCA-1_7_91819586_C_A_+ AACGTCATCTACTTCA-1 7 91819586 C A + 1 1 C>A C>A +AACAACCGTTTCACAG-1_2_112412770_G_T_+ AACAACCGTTTCACAG-1 2 112412770 G T + 1 1 G>T G>T +AAAGGATCATCCGATA-1_17_39848018_C_T_+ AAAGGATCATCCGATA-1 17 39848018 C T + 1 1 C>T C>T +AAACGAAGTTGTAAAG-1_14_54906857_G_A_- AAACGAAGTTGTAAAG-1 14 54906857 G A - 1 1 G>A C>T +AACCTGATCTAGTACG-1_16_52161211_T_C_+ AACCTGATCTAGTACG-1 16 52161211 T C + 1 1 T>C T>C +AACCCAACAAATCGTC-1_5_124888356_T_G_+ AACCCAACAAATCGTC-1 5 124888356 T G + 1 1 T>G T>G +AACCTTTCACACCTGG-1_4_138456989_A_G_+ AACCTTTCACACCTGG-1 4 138456989 A G + 1 1 A>G A>G +AAAGGTAAGCATTTGC-1_17_43612034_G_A_+ AAAGGTAAGCATTTGC-1 17 43612034 G A + 1 1 G>A G>A +AAATGGATCCCTTGTG-1_5_123071757_A_T_- AAATGGATCCCTTGTG-1 5 123071757 A T - 1 1 A>T T>A +AACAGGGCAGATTTCG-1_12_69604949_T_C_- AACAGGGCAGATTTCG-1 12 69604949 T C - 1 1 T>C A>G +AACCATGTCCAATCTT-1_9_70576774_G_A_+ AACCATGTCCAATCTT-1 9 70576774 G A + 1 1 G>A G>A +AACGAAATCTTGAACG-1_10_127088423_T_C_+ AACGAAATCTTGAACG-1 10 127088423 T C + 1 1 T>C T>C +AACCCAAGTGTCATCA-1_17_39847607_T_C_+ AACCCAAGTGTCATCA-1 17 39847607 T C + 1 1 T>C T>C +AACCTGATCGCTCATC-1_MT_9205_C_T_+ AACCTGATCGCTCATC-1 MT 9205 C T + 1 3 C>T C>T +AACCAACGTGATACAA-1_12_105800745_A_C_+ AACCAACGTGATACAA-1 12 105800745 A C + 1 1 A>C A>C +AACCATGTCCAATCTT-1_19_5802668_G_A_- AACCATGTCCAATCTT-1 19 5802668 G A - 1 3 G>A C>T +AACCTTTAGTAGGAAG-1_X_167207312_A_G_- AACCTTTAGTAGGAAG-1 X 167207312 A G - 1 1 A>G T>C +AAAGGATGTACCATAC-1_8_72663953_G_A_+ AAAGGATGTACCATAC-1 8 72663953 G A + 1 1 G>A G>A +AAACGCTGTCAACACT-1_15_43527507_T_C_+ AAACGCTGTCAACACT-1 15 43527507 T C + 1 1 T>C T>C +AAGACTCAGGGAGATA-1_9_3037734_A_T_- AAGACTCAGGGAGATA-1 9 3037734 A T - 1 1 A>T T>A +AAACCCAGTGCTCGTG-1_8_94154101_G_C_+ AAACCCAGTGCTCGTG-1 8 94154101 G C + 1 1 G>C G>C +AAAGTCCCACAGTATC-1_X_98578178_C_G_- AAAGTCCCACAGTATC-1 X 98578178 C G - 1 1 C>G G>C AACCACAGTGTTCCTC-1_19_21392290_C_T_- AACCACAGTGTTCCTC-1 19 21392290 C T - 1 1 C>T G>A -AAAGTCCAGTCTGGTT-1_19_38636778_G_A_+ AAAGTCCAGTCTGGTT-1 19 38636778 G A + 1 1 G>A G>A -AACCACAAGCTTTGTG-1_19_7215295_G_A_- AACCACAAGCTTTGTG-1 19 7215295 G A - 1 1 G>A C>T +AAAGGGCTCTGCTAGA-1_11_22974580_A_T_+ AAAGGGCTCTGCTAGA-1 11 22974580 A T + 1 1 A>T A>T +AAACCCACATATCTGG-1_6_56900749_C_A_- AAACCCACATATCTGG-1 6 56900749 C A - 1 1 C>A G>T +AACCATGTCCAATCTT-1_16_57391454_T_C_- AACCATGTCCAATCTT-1 16 57391454 T C - 1 1 T>C A>G +AAGACTCCACATACTG-1_16_57391454_T_C_- AAGACTCCACATACTG-1 16 57391454 T C - 1 1 T>C A>G +AACCATGGTCATACCA-1_6_82647045_C_T_- AACCATGGTCATACCA-1 6 82647045 C T - 1 1 C>T G>A +AACAACCGTTGTAAAG-1_8_47343133_G_A_- AACAACCGTTGTAAAG-1 8 47343133 G A - 1 1 G>A C>T +AAACGCTAGGTTACAA-1_11_20062892_G_A_- AAACGCTAGGTTACAA-1 11 20062892 G A - 1 1 G>A C>T +AACGTCACAAGAATGT-1_9_50344233_C_T_- AACGTCACAAGAATGT-1 9 50344233 C T - 1 1 C>T G>A +AACACACCATAACGGG-1_18_46755003_G_A_+ AACACACCATAACGGG-1 18 46755003 G A + 1 1 G>A G>A +AAAGGATAGATGAAGG-1_2_5293728_T_A_- AAAGGATAGATGAAGG-1 2 5293728 T A - 1 1 T>A A>T +AAACGCTCAGTAGGAC-1_7_45003085_T_C_- AAACGCTCAGTAGGAC-1 7 45003085 T C - 1 1 T>C A>G +AAGACTCTCGGAGATG-1_5_121237095_T_C_+ AAGACTCTCGGAGATG-1 5 121237095 T C + 1 1 T>C T>C +AACCCAAGTATCGATC-1_2_140026846_T_C_- AACCCAAGTATCGATC-1 2 140026846 T C - 1 1 T>C A>G +AAATGGAGTACCGGAA-1_7_97407637_A_G_+ AAATGGAGTACCGGAA-1 7 97407637 A G + 1 1 A>G A>G +AAGACTCGTGGTACAG-1_10_58258299_T_C_+ AAGACTCGTGGTACAG-1 10 58258299 T C + 1 1 T>C T>C +AAGACAAGTCCACATA-1_19_3527619_A_T_- AAGACAAGTCCACATA-1 19 3527619 A T - 1 1 A>T T>A +AACTTCTAGTGATGGC-1_16_35697132_C_A_- AACTTCTAGTGATGGC-1 16 35697132 C A - 1 1 C>A G>T +AACAGGGTCTTCCACG-1_5_117282879_A_C_- AACAGGGTCTTCCACG-1 5 117282879 A C - 1 1 A>C T>G +AAAGGTATCGTGTTCC-1_17_39848018_C_T_+ AAAGGTATCGTGTTCC-1 17 39848018 C T + 1 1 C>T C>T +AAACGCTGTAGAGGAA-1_4_152391742_A_T_- AAACGCTGTAGAGGAA-1 4 152391742 A T - 1 1 A>T T>A +AACCACAAGACTTGTC-1_17_24721172_G_A_+ AACCACAAGACTTGTC-1 17 24721172 G A + 1 1 G>A G>A +AAACCCATCGGATAAA-1_6_28426358_T_G_+ AAACCCATCGGATAAA-1 6 28426358 T G + 1 1 T>G T>G +AAGAACAGTAACAGGC-1_16_57391688_T_G_- AAGAACAGTAACAGGC-1 16 57391688 T G - 1 1 T>G A>C +AACAAAGTCCCGTTGT-1_18_6454833_T_C_- AACAAAGTCCCGTTGT-1 18 6454833 T C - 1 1 T>C A>G +AACAACCGTCATCGGC-1_8_123204501_G_A_- AACAACCGTCATCGGC-1 8 123204501 G A - 1 1 G>A C>T +AAAGGGCTCTGCTAGA-1_11_22974579_T_G_+ AAAGGGCTCTGCTAGA-1 11 22974579 T G + 1 1 T>G T>G +AAACGAACAACTGGTT-1_15_34440532_T_C_- AAACGAACAACTGGTT-1 15 34440532 T C - 1 1 T>C A>G +AACAACCCAGGAACCA-1_10_70558568_T_C_+ AACAACCCAGGAACCA-1 10 70558568 T C + 1 1 T>C T>C +AAACGAAGTGCCCACA-1_7_118109945_G_A_- AAACGAAGTGCCCACA-1 7 118109945 G A - 1 1 G>A C>T +AAAGAACAGTAACAGT-1_19_5802287_G_T_- AAAGAACAGTAACAGT-1 19 5802287 G T - 1 2 G>T C>A +AACCTTTTCGCTCCTA-1_5_134489503_A_C_- AACCTTTTCGCTCCTA-1 5 134489503 A C - 1 1 A>C T>G +AAACGCTCAGTAGGAC-1_1_135768925_G_A_+ AAACGCTCAGTAGGAC-1 1 135768925 G A + 1 1 G>A G>A +AACCAACGTGCATGTT-1_7_127583205_G_A_+ AACCAACGTGCATGTT-1 7 127583205 G A + 1 1 G>A G>A +AAAGTGAAGGGCCAAT-1_1_172507352_T_A_+ AAAGTGAAGGGCCAAT-1 1 172507352 T A + 1 1 T>A T>A +AACGGGAGTGACTAAA-1_11_23627127_C_A_- AACGGGAGTGACTAAA-1 11 23627127 C A - 1 1 C>A G>T +AAAGGGCCAACCAATC-1_16_57391688_T_G_- AAAGGGCCAACCAATC-1 16 57391688 T G - 1 1 T>G A>C +AACAGGGGTCGTGATT-1_2_98662304_G_T_+ AACAGGGGTCGTGATT-1 2 98662304 G T + 1 1 G>T G>T +AACCAACAGGCGAACT-1_17_39847607_T_C_- AACCAACAGGCGAACT-1 17 39847607 T C - 1 1 T>C A>G +AACCAACTCCCAAGCG-1_5_146261080_C_A_+ AACCAACTCCCAAGCG-1 5 146261080 C A + 1 1 C>A C>A +AAGATAGAGCCAACCC-1_7_45122475_G_A_- AAGATAGAGCCAACCC-1 7 45122475 G A - 1 1 G>A C>T +AACCTGATCTTCGTGC-1_3_79162959_C_T_- AACCTGATCTTCGTGC-1 3 79162959 C T - 1 1 C>T G>A +AAGACTCGTGGTACAG-1_11_78516876_C_T_+ AAGACTCGTGGTACAG-1 11 78516876 C T + 1 1 C>T C>T +AAAGAACTCTGTCCCA-1_3_132683825_A_G_- AAAGAACTCTGTCCCA-1 3 132683825 A G - 1 1 A>G T>C +AAACGAAGTGCCCACA-1_7_118109179_G_A_- AAACGAAGTGCCCACA-1 7 118109179 G A - 1 1 G>A C>T +AACCACACAATAGTAG-1_MT_6817_G_A_+ AACCACACAATAGTAG-1 MT 6817 G A + 1 1 G>A G>A +AAGACAATCGCGTAGC-1_17_39847271_C_G_- AAGACAATCGCGTAGC-1 17 39847271 C G - 1 1 C>G G>C +AAACGAAAGGTAGTCG-1_10_128548373_G_A_- AAACGAAAGGTAGTCG-1 10 128548373 G A - 1 1 G>A C>T +AACTTCTCAGAGGACT-1_6_56240591_A_T_- AACTTCTCAGAGGACT-1 6 56240591 A T - 1 1 A>T T>A +AACCACAAGCTTTGTG-1_17_33952089_G_A_- AACCACAAGCTTTGTG-1 17 33952089 G A - 1 1 G>A C>T +AACAACCAGTAATACG-1_X_100795559_T_G_+ AACAACCAGTAATACG-1 X 100795559 T G + 1 1 T>G T>G +AACCCAATCTTGCAAG-1_2_164018025_T_C_+ AACCCAATCTTGCAAG-1 2 164018025 T C + 1 1 T>C T>C +AACTTCTTCTTCACGC-1_19_53944869_G_A_+ AACTTCTTCTTCACGC-1 19 53944869 G A + 1 1 G>A G>A +AAGACTCCACATACTG-1_5_146261076_T_C_+ AAGACTCCACATACTG-1 5 146261076 T C + 1 1 T>C T>C +AAAGTCCCACGCTTAA-1_17_39847458_A_G_- AAAGTCCCACGCTTAA-1 17 39847458 A G - 1 1 A>G T>C +AACCATGGTGAGTTTC-1_7_124136538_T_A_+ AACCATGGTGAGTTTC-1 7 124136538 T A + 1 1 T>A T>A +AAAGGGCCACTCAGAT-1_9_3004614_A_G_- AAAGGGCCACTCAGAT-1 9 3004614 A G - 1 1 A>G T>C +AAAGTCCGTCCTCCAT-1_6_117181203_C_T_+ AAAGTCCGTCCTCCAT-1 6 117181203 C T + 1 1 C>T C>T +AACCAACCAGTCGCTG-1_7_45176067_C_T_+ AACCAACCAGTCGCTG-1 7 45176067 C T + 1 1 C>T C>T +AAACCCACAGAGGAAA-1_17_70963665_A_G_+ AAACCCACAGAGGAAA-1 17 70963665 A G + 1 1 A>G A>G +AAACGAAGTGTGAATA-1_3_104655787_G_A_+ AAACGAAGTGTGAATA-1 3 104655787 G A + 1 1 G>A G>A +AAACGAAGTTCATCTT-1_7_103826730_C_T_- AAACGAAGTTCATCTT-1 7 103826730 C T - 1 13 C>T G>A +AACTTCTAGCAGATAT-1_X_77762339_T_C_- AACTTCTAGCAGATAT-1 X 77762339 T C - 1 1 T>C A>G +AAACGAAGTGTTTACG-1_11_117698499_T_C_+ AAACGAAGTGTTTACG-1 11 117698499 T C + 1 1 T>C T>C +AACAGGGGTGCACATT-1_12_117279788_G_A_- AACAGGGGTGCACATT-1 12 117279788 G A - 1 1 G>A C>T +AAACCCACATATCTCT-1_3_152846330_G_A_- AAACCCACATATCTCT-1 3 152846330 G A - 1 1 G>A C>T +AAAGGGCCACTCAGAT-1_11_36080520_T_C_- AAAGGGCCACTCAGAT-1 11 36080520 T C - 1 1 T>C A>G +AACGAAATCCGTCAAA-1_17_39847458_A_G_+ AACGAAATCCGTCAAA-1 17 39847458 A G + 1 1 A>G A>G +AACCAACGTGACCGTC-1_17_39848018_C_T_+ AACCAACGTGACCGTC-1 17 39848018 C T + 1 1 C>T C>T +AAACGCTCAGTAGGAC-1_3_90213215_G_A_- AAACGCTCAGTAGGAC-1 3 90213215 G A - 1 1 G>A C>T +AACACACAGTGCACAG-1_MT_11199_G_T_+ AACACACAGTGCACAG-1 MT 11199 G T + 1 1 G>T G>T +AAACCCATCATCTCTA-1_3_95032961_C_T_- AAACCCATCATCTCTA-1 3 95032961 C T - 1 1 C>T G>A +AACGAAATCTTGAACG-1_9_75573862_T_G_- AACGAAATCTTGAACG-1 9 75573862 T G - 1 1 T>G A>C +AAAGGGCCACACTTAG-1_9_40785058_A_T_+ AAAGGGCCACACTTAG-1 9 40785058 A T + 1 1 A>T A>T +AAGACTCGTCCACATA-1_5_146261113_T_C_+ AAGACTCGTCCACATA-1 5 146261113 T C + 1 1 T>C T>C +AACTTCTCACACGTGC-1_17_39847403_T_G_+ AACTTCTCACACGTGC-1 17 39847403 T G + 1 1 T>G T>G +AACCCAATCTTGCAAG-1_9_121490087_T_C_- AACCCAATCTTGCAAG-1 9 121490087 T C - 1 1 T>C A>G +AAAGTCCAGTCGGCCT-1_X_102185521_G_A_- AAAGTCCAGTCGGCCT-1 X 102185521 G A - 1 1 G>A C>T +AAACCCATCGTACACA-1_10_34301143_C_T_+ AAACCCATCGTACACA-1 10 34301143 C T + 1 1 C>T C>T +AAACCCACATATCTCT-1_4_28900491_G_T_+ AAACCCACATATCTCT-1 4 28900491 G T + 1 1 G>T G>T +AACGGGAGTGTCATTG-1_9_3035165_T_C_- AACGGGAGTGTCATTG-1 9 3035165 T C - 1 1 T>C A>G +AAGACTCGTGGTACAG-1_2_101901370_C_T_+ AAGACTCGTGGTACAG-1 2 101901370 C T + 1 1 C>T C>T +AACGAAAAGGACAAGA-1_4_103316119_T_C_+ AACGAAAAGGACAAGA-1 4 103316119 T C + 1 1 T>C T>C +AACCTTTCACACCTGG-1_4_138457000_T_A_+ AACCTTTCACACCTGG-1 4 138457000 T A + 1 1 T>A T>A +AACAACCAGGAACTAT-1_1_181904429_C_T_- AACAACCAGGAACTAT-1 1 181904429 C T - 1 1 C>T G>A +AACTTCTCACTAACGT-1_17_39848652_T_C_+ AACTTCTCACTAACGT-1 17 39848652 T C + 1 1 T>C T>C +AACCACAAGCTTTGTG-1_1_135384600_G_A_- AACCACAAGCTTTGTG-1 1 135384600 G A - 1 1 G>A C>T +AAAGGGCAGGACATCG-1_6_28575707_G_A_+ AAAGGGCAGGACATCG-1 6 28575707 G A + 1 1 G>A G>A +AACAAGATCTAGGCCG-1_16_57391454_T_C_- AACAAGATCTAGGCCG-1 16 57391454 T C - 1 1 T>C A>G +AAACGCTCAGTAGGAC-1_5_139017701_G_A_- AAACGCTCAGTAGGAC-1 5 139017701 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_3_90213009_G_A_- AAACGCTCAGTAGGAC-1 3 90213009 G A - 1 1 G>A C>T +AAGACTCCAACACAGG-1_7_127583205_G_A_+ AAGACTCCAACACAGG-1 7 127583205 G A + 1 1 G>A G>A +AACCAACAGCTACTGT-1_17_39847607_T_C_+ AACCAACAGCTACTGT-1 17 39847607 T C + 1 1 T>C T>C +AAACGCTCACCTAAAC-1_14_19278194_T_C_+ AAACGCTCACCTAAAC-1 14 19278194 T C + 1 1 T>C T>C +AAAGGGCAGTAAGCAT-1_X_150524815_C_T_- AAAGGGCAGTAAGCAT-1 X 150524815 C T - 1 1 C>T G>A +AACCATGAGCGTCGAA-1_3_32933791_T_C_+ AACCATGAGCGTCGAA-1 3 32933791 T C + 1 1 T>C T>C +AACTTCTGTGAGATCG-1_16_57391454_T_C_- AACTTCTGTGAGATCG-1 16 57391454 T C - 1 1 T>C A>G +AACAACCCATTCGGGC-1_2_98662860_G_A_+ AACAACCCATTCGGGC-1 2 98662860 G A + 1 1 G>A G>A +AAGACAACATCAACCA-1_7_19206350_A_G_+ AAGACAACATCAACCA-1 7 19206350 A G + 1 1 A>G A>G +AACTTCTTCTTCACGC-1_6_112925874_A_G_- AACTTCTTCTTCACGC-1 6 112925874 A G - 1 1 A>G T>C +AACGGGAAGTTGCCCG-1_8_58144331_A_T_- AACGGGAAGTTGCCCG-1 8 58144331 A T - 1 1 A>T T>A +AACCCAAAGGGCATGT-1_10_53907222_C_T_- AACCCAAAGGGCATGT-1 10 53907222 C T - 1 1 C>T G>A +AAATGGAAGTAGAATC-1_11_82103401_C_A_+ AAATGGAAGTAGAATC-1 11 82103401 C A + 1 1 C>A C>A +AAAGAACGTGGACTGA-1_4_109387523_C_T_+ AAAGAACGTGGACTGA-1 4 109387523 C T + 1 1 C>T C>T +AAATGGAAGCAGATAT-1_11_68903229_G_A_+ AAATGGAAGCAGATAT-1 11 68903229 G A + 1 1 G>A G>A +AACGTCACACTCCTTG-1_13_21485472_G_A_+ AACGTCACACTCCTTG-1 13 21485472 G A + 1 1 G>A G>A +AAAGGGCTCTTCCAGC-1_14_93280053_A_G_- AAAGGGCTCTTCCAGC-1 14 93280053 A G - 1 1 A>G T>C +AAAGGGCTCTCACTCG-1_7_15917304_A_T_- AAAGGGCTCTCACTCG-1 7 15917304 A T - 1 1 A>T T>A +AAGATAGCACGCGTGT-1_19_4837762_C_G_- AAGATAGCACGCGTGT-1 19 4837762 C G - 1 1 C>G G>C +AACGAAAAGCTAAACA-1_8_90838729_C_T_+ AACGAAAAGCTAAACA-1 8 90838729 C T + 1 1 C>T C>T +AAACGAACAACTGGTT-1_7_127583239_T_C_+ AAACGAACAACTGGTT-1 7 127583239 T C + 1 1 T>C T>C +AAACGCTCAGTAGGAC-1_16_58733967_C_T_+ AAACGCTCAGTAGGAC-1 16 58733967 C T + 1 1 C>T C>T +AACAAGAAGGTTCAGG-1_11_100581478_G_C_+ AACAAGAAGGTTCAGG-1 11 100581478 G C + 1 1 G>C G>C +AAGAACACAACTGATC-1_7_131570929_C_T_+ AAGAACACAACTGATC-1 7 131570929 C T + 1 1 C>T C>T +AACCAACCACGGTAGA-1_18_48048353_T_A_+ AACCAACCACGGTAGA-1 18 48048353 T A + 1 1 T>A T>A +AACCCAAGTATCGATC-1_13_8293019_A_G_+ AACCCAAGTATCGATC-1 13 8293019 A G + 1 1 A>G A>G +AAAGAACTCATTACTC-1_11_50200223_C_T_- AAAGAACTCATTACTC-1 11 50200223 C T - 1 1 C>T G>A +AACAACCCAGACGGAT-1_2_103779494_A_T_- AACAACCCAGACGGAT-1 2 103779494 A T - 1 1 A>T T>A +AAAGGTACAGTCTCTC-1_5_146261004_G_C_+ AAAGGTACAGTCTCTC-1 5 146261004 G C + 1 1 G>C G>C +AAATGGAAGTAGAATC-1_3_100685262_C_T_- AAATGGAAGTAGAATC-1 3 100685262 C T - 1 1 C>T G>A +AACAGGGCAGATTTCG-1_5_29365119_T_C_- AACAGGGCAGATTTCG-1 5 29365119 T C - 1 1 T>C A>G +AAAGAACCAACTTCTT-1_2_144142590_G_T_- AAAGAACCAACTTCTT-1 2 144142590 G T - 1 1 G>T C>A +AACGGGATCAGGAACG-1_5_142903878_A_C_- AACGGGATCAGGAACG-1 5 142903878 A C - 1 1 A>C T>G +AAGACTCTCGAGTACT-1_10_127092951_C_A_+ AAGACTCTCGAGTACT-1 10 127092951 C A + 1 1 C>A C>A +AACTTCTTCTTAATCC-1_17_56779074_G_T_- AACTTCTTCTTAATCC-1 17 56779074 G T - 1 1 G>T C>A +AAAGGGCCAACACAGG-1_14_93202296_T_C_- AAAGGGCCAACACAGG-1 14 93202296 T C - 1 1 T>C A>G +AACGAAATCGTCAAAC-1_X_166388875_C_T_+ AACGAAATCGTCAAAC-1 X 166388875 C T + 1 1 C>T C>T +AAACCCACATATCTGG-1_11_52116905_C_A_+ AAACCCACATATCTGG-1 11 52116905 C A + 1 1 C>A C>A +AAGACTCCAACACAGG-1_4_120806244_A_G_- AAGACTCCAACACAGG-1 4 120806244 A G - 1 1 A>G T>C +AAGACTCAGTGAATAC-1_5_108371167_T_C_+ AAGACTCAGTGAATAC-1 5 108371167 T C + 1 1 T>C T>C +AAATGGAAGCAGATAT-1_4_138457010_G_A_+ AAATGGAAGCAGATAT-1 4 138457010 G A + 1 1 G>A G>A +AAAGTGAAGGCATCGA-1_19_7215442_G_A_- AAAGTGAAGGCATCGA-1 19 7215442 G A - 1 1 G>A C>T +AAGACTCGTTGCTCGG-1_14_63142822_A_G_+ AAGACTCGTTGCTCGG-1 14 63142822 A G + 1 1 A>G A>G +AAACCCACAGAGGAAA-1_MT_6750_G_C_+ AAACCCACAGAGGAAA-1 MT 6750 G C + 1 2 G>C G>C +AACCATGCAGAGTTCT-1_16_57391683_T_A_- AACCATGCAGAGTTCT-1 16 57391683 T A - 1 1 T>A A>T +AACCATGGTGAGTTTC-1_8_84716266_T_C_- AACCATGGTGAGTTTC-1 8 84716266 T C - 1 1 T>C A>G +AAATGGAAGCAGATAT-1_14_64122842_G_A_- AAATGGAAGCAGATAT-1 14 64122842 G A - 1 1 G>A C>T +AAGACAACACCGCTGA-1_17_89099980_T_A_- AAGACAACACCGCTGA-1 17 89099980 T A - 1 1 T>A A>T +AACCACAAGATGCTTC-1_16_33830453_G_A_+ AACCACAAGATGCTTC-1 16 33830453 G A + 1 1 G>A G>A +AACAAGACACAATCTG-1_2_131938407_C_T_+ AACAAGACACAATCTG-1 2 131938407 C T + 1 2 C>T C>T +AACCCAAAGAATTGTG-1_12_29732485_G_A_+ AACCCAAAGAATTGTG-1 12 29732485 G A + 1 1 G>A G>A +AACAAAGTCCCGTGTT-1_9_3037755_G_T_- AACAAAGTCCCGTGTT-1 9 3037755 G T - 1 1 G>T C>A +AAACGCTAGGCTCACC-1_X_74311695_A_C_+ AAACGCTAGGCTCACC-1 X 74311695 A C + 1 1 A>C A>C +AAAGTCCGTGACTGTT-1_18_9994341_A_G_+ AAAGTCCGTGACTGTT-1 18 9994341 A G + 1 1 A>G A>G +AACGTCACACTCCTTG-1_11_106066801_T_C_+ AACGTCACACTCCTTG-1 11 106066801 T C + 1 1 T>C T>C +AACAAGAAGTAAACTG-1_14_105176872_G_A_- AACAAGAAGTAAACTG-1 14 105176872 G A - 1 1 G>A C>T +AACCACATCCTAGCTC-1_12_109571381_T_C_- AACCACATCCTAGCTC-1 12 109571381 T C - 1 1 T>C A>G +AACAACCAGTAACAGT-1_17_39847403_T_G_- AACAACCAGTAACAGT-1 17 39847403 T G - 1 1 T>G A>C +AAGAACAAGGTCGAGT-1_9_3024456_T_G_- AAGAACAAGGTCGAGT-1 9 3024456 T G - 1 1 T>G A>C +AAATGGACACGGAAGT-1_6_147070688_C_T_+ AAATGGACACGGAAGT-1 6 147070688 C T + 1 1 C>T C>T +AACCTGAAGTCCCAGC-1_7_67231277_G_A_- AACCTGAAGTCCCAGC-1 7 67231277 G A - 1 1 G>A C>T +AACACACGTGTTGCCG-1_8_22637007_C_T_- AACACACGTGTTGCCG-1 8 22637007 C T - 1 1 C>T G>A +AACTTCTAGGGATCTG-1_19_5107932_A_G_- AACTTCTAGGGATCTG-1 19 5107932 A G - 1 1 A>G T>C +AACTTCTCACACGTGC-1_5_41625378_A_G_- AACTTCTCACACGTGC-1 5 41625378 A G - 1 1 A>G T>C +AAACGAAGTAGCACAG-1_17_39847458_A_G_- AAACGAAGTAGCACAG-1 17 39847458 A G - 1 1 A>G T>C +AACAAGAAGCAATTAG-1_X_77662984_G_A_+ AACAAGAAGCAATTAG-1 X 77662984 G A + 1 1 G>A G>A +AACCACAAGCCTTTCC-1_13_15662704_C_T_+ AACCACAAGCCTTTCC-1 13 15662704 C T + 1 1 C>T C>T +AAGACAAGTACTGACT-1_3_108361233_G_A_+ AAGACAAGTACTGACT-1 3 108361233 G A + 1 1 G>A G>A +AAACCCACACACCTGG-1_11_120345845_C_T_- AAACCCACACACCTGG-1 11 120345845 C T - 1 1 C>T G>A +AACAAGAAGCAATTAG-1_5_122453704_G_A_- AACAAGAAGCAATTAG-1 5 122453704 G A - 1 1 G>A C>T +AAGAACAGTTGCAAGG-1_4_124855345_G_A_- AAGAACAGTTGCAAGG-1 4 124855345 G A - 1 1 G>A C>T +AAACCCAAGTTTAGGA-1_7_100641053_C_T_+ AAACCCAAGTTTAGGA-1 7 100641053 C T + 1 1 C>T C>T +AAAGGGCAGTAAGCAT-1_14_78722105_G_A_- AAAGGGCAGTAAGCAT-1 14 78722105 G A - 1 1 G>A C>T +AACCATGCAGAGTTCT-1_17_39847403_T_G_+ AACCATGCAGAGTTCT-1 17 39847403 T G + 1 1 T>G T>G +AAGAACATCTCCGAAA-1_4_117425307_G_A_- AAGAACATCTCCGAAA-1 4 117425307 G A - 1 1 G>A C>T +AACCTTTTCCTCATAT-1_16_44086608_G_A_- AACCTTTTCCTCATAT-1 16 44086608 G A - 1 1 G>A C>T +AACAAAGCACGCAGTC-1_19_5802154_C_T_- AACAAAGCACGCAGTC-1 19 5802154 C T - 1 2 C>T G>A +AACTTCTAGCAGATAT-1_11_75465560_T_C_+ AACTTCTAGCAGATAT-1 11 75465560 T C + 1 1 T>C T>C +AACAACCAGACGACTG-1_17_39847607_T_C_+ AACAACCAGACGACTG-1 17 39847607 T C + 1 1 T>C T>C +AACCACATCGGAGATG-1_7_127022188_T_G_- AACCACATCGGAGATG-1 7 127022188 T G - 1 1 T>G A>C +AACAAGATCATCCTGC-1_17_39847403_T_G_+ AACAAGATCATCCTGC-1 17 39847403 T G + 1 1 T>G T>G +AAACGCTCAATTTCGG-1_10_50791454_A_G_+ AAACGCTCAATTTCGG-1 10 50791454 A G + 1 1 A>G A>G +AAAGGTAAGGCATCTT-1_16_57391680_C_T_- AAAGGTAAGGCATCTT-1 16 57391680 C T - 1 1 C>T G>A +AAGATAGGTCATCAGT-1_5_140620890_G_T_- AAGATAGGTCATCAGT-1 5 140620890 G T - 1 1 G>T C>A +AAACCCAAGGTAGACC-1_16_57391679_G_T_- AAACCCAAGGTAGACC-1 16 57391679 G T - 1 1 G>T C>A +AAAGTCCTCTTCCCGA-1_11_77978986_C_A_+ AAAGTCCTCTTCCCGA-1 11 77978986 C A + 1 1 C>A C>A +AACAGGGTCGACGCTG-1_2_98667138_C_T_- AACAGGGTCGACGCTG-1 2 98667138 C T - 1 1 C>T G>A +AACACACTCTGCGGAC-1_7_141402946_C_T_+ AACACACTCTGCGGAC-1 7 141402946 C T + 1 1 C>T C>T +AAACCCAAGGTAGACC-1_16_57391688_T_G_- AAACCCAAGGTAGACC-1 16 57391688 T G - 1 1 T>G A>C +AACGGGAAGCTTCGTA-1_16_20560741_T_C_+ AACGGGAAGCTTCGTA-1 16 20560741 T C + 1 1 T>C T>C +AAGATAGGTACGCGTC-1_7_28778456_G_A_+ AAGATAGGTACGCGTC-1 7 28778456 G A + 1 1 G>A G>A +AAACGAAGTCTCAGAT-1_9_3000527_T_C_- AAACGAAGTCTCAGAT-1 9 3000527 T C - 1 1 T>C A>G +AAGACTCGTGTCTTGA-1_17_39848018_C_T_+ AAGACTCGTGTCTTGA-1 17 39848018 C T + 1 1 C>T C>T +AACCAACAGTATCTGC-1_16_57391680_C_T_- AACCAACAGTATCTGC-1 16 57391680 C T - 1 1 C>T G>A +AACAAGAGTATACAGA-1_17_39847458_A_G_+ AACAAGAGTATACAGA-1 17 39847458 A G + 1 1 A>G A>G +AACTTCTCACTAACGT-1_17_29100329_T_C_+ AACTTCTCACTAACGT-1 17 29100329 T C + 1 1 T>C T>C +AAACCCACATATCTGG-1_9_121725436_C_A_+ AAACCCACATATCTGG-1 9 121725436 C A + 1 1 C>A C>A +AAAGGTACACCGTGCA-1_17_65985127_C_T_- AAAGGTACACCGTGCA-1 17 65985127 C T - 1 1 C>T G>A +AAAGTCCGTGACTGTT-1_11_80022153_C_T_+ AAAGTCCGTGACTGTT-1 11 80022153 C T + 1 1 C>T C>T +AACAAAGCACAGTATC-1_4_124849503_C_T_- AACAAAGCACAGTATC-1 4 124849503 C T - 1 1 C>T G>A +AACCAACGTGGTATGG-1_4_47469973_T_G_- AACCAACGTGGTATGG-1 4 47469973 T G - 1 1 T>G A>C +AACCACAGTTAGAGTA-1_17_90935278_C_T_- AACCACAGTTAGAGTA-1 17 90935278 C T - 1 1 C>T G>A +AAACCCATCGGATAAA-1_2_164999514_T_C_+ AAACCCATCGGATAAA-1 2 164999514 T C + 1 1 T>C T>C +AAACGCTTCTGAGCAT-1_17_39847403_T_G_+ AAACGCTTCTGAGCAT-1 17 39847403 T G + 1 1 T>G T>G +AACGTCACACTCCTTG-1_13_73516326_G_A_+ AACGTCACACTCCTTG-1 13 73516326 G A + 1 1 G>A G>A +AACCAACTCGCCCAGA-1_1_59670782_T_C_- AACCAACTCGCCCAGA-1 1 59670782 T C - 1 1 T>C A>G +AACAACCCATTCGGGC-1_2_98662851_T_A_+ AACAACCCATTCGGGC-1 2 98662851 T A + 1 1 T>A T>A +AACCACATCCTAGCTC-1_5_131096247_T_A_- AACCACATCCTAGCTC-1 5 131096247 T A - 1 1 T>A A>T +AACCACATCGGAGATG-1_19_12767323_A_C_- AACCACATCGGAGATG-1 19 12767323 A C - 1 1 A>C T>G +AAGACAAGTCGAATTC-1_7_99479466_C_T_- AAGACAAGTCGAATTC-1 7 99479466 C T - 1 1 C>T G>A +AACAACCAGACGACTG-1_17_39847403_T_G_+ AACAACCAGACGACTG-1 17 39847403 T G + 1 2 T>G T>G +AAAGGTACAATTGCAC-1_19_10245420_G_A_- AAAGGTACAATTGCAC-1 19 10245420 G A - 1 1 G>A C>T +AACGTCATCAAGCGTT-1_10_123630638_T_C_+ AACGTCATCAAGCGTT-1 10 123630638 T C + 1 1 T>C T>C +AACTTCTAGAGGTCGT-1_2_37862498_G_T_- AACTTCTAGAGGTCGT-1 2 37862498 G T - 1 1 G>T C>A +AACTTCTCAGCGGATA-1_9_3017913_C_A_- AACTTCTCAGCGGATA-1 9 3017913 C A - 1 1 C>A G>T +AAACGCTAGGTTACAA-1_5_92054733_A_T_- AAACGCTAGGTTACAA-1 5 92054733 A T - 1 1 A>T T>A +AAACCCACATATCTCT-1_5_146261080_C_A_+ AAACCCACATATCTCT-1 5 146261080 C A + 1 1 C>A C>A +AACAAGAAGCATACTC-1_9_3000527_T_C_- AACAAGAAGCATACTC-1 9 3000527 T C - 1 1 T>C A>G +AACCTTTTCCTAGCGG-1_16_98010731_T_C_+ AACCTTTTCCTAGCGG-1 16 98010731 T C + 1 1 T>C T>C +AACCAACTCGGAAGGT-1_1_104778373_T_G_+ AACCAACTCGGAAGGT-1 1 104778373 T G + 1 1 T>G T>G +AAACGAATCGCTCTAC-1_17_39847403_T_G_- AAACGAATCGCTCTAC-1 17 39847403 T G - 1 1 T>G A>C +AACGGGAAGTTACTCG-1_17_39848018_C_T_+ AACGGGAAGTTACTCG-1 17 39848018 C T + 1 1 C>T C>T +AAACCCATCGGATAAA-1_18_60778461_C_T_+ AAACCCATCGGATAAA-1 18 60778461 C T + 1 1 C>T C>T +AAAGAACAGTCGCGAA-1_11_36628770_T_A_- AAAGAACAGTCGCGAA-1 11 36628770 T A - 1 1 T>A A>T +AACCACACAGCTTTGA-1_8_80718651_A_G_- AACCACACAGCTTTGA-1 8 80718651 A G - 1 1 A>G T>C +AACCAACTCAGTGGGA-1_4_102972006_C_A_+ AACCAACTCAGTGGGA-1 4 102972006 C A + 1 1 C>A C>A +AAATGGACACAAGGTG-1_19_41526756_C_A_+ AAATGGACACAAGGTG-1 19 41526756 C A + 1 1 C>A C>A +AAAGTCCTCCGATGCG-1_14_93291807_C_G_- AAAGTCCTCCGATGCG-1 14 93291807 C G - 1 1 C>G G>C +AAAGTCCCATAGCACT-1_17_39848018_C_T_+ AAAGTCCCATAGCACT-1 17 39848018 C T + 1 1 C>T C>T +AAACGCTCATCAACCA-1_3_73310346_T_G_+ AAACGCTCATCAACCA-1 3 73310346 T G + 1 1 T>G T>G +AAATGGACAAGCGCAA-1_15_103246522_A_T_+ AAATGGACAAGCGCAA-1 15 103246522 A T + 1 1 A>T A>T +AACCACATCGGAGATG-1_10_69870655_T_A_+ AACCACATCGGAGATG-1 10 69870655 T A + 1 1 T>A T>A +AACAAGAAGTAAACTG-1_11_70527492_A_G_+ AACAAGAAGTAAACTG-1 11 70527492 A G + 1 1 A>G A>G +AAAGTGAGTAGGTACG-1_16_33058809_C_T_+ AAAGTGAGTAGGTACG-1 16 33058809 C T + 1 1 C>T C>T +AAGACTCGTATCTCTT-1_9_3037741_A_G_- AAGACTCGTATCTCTT-1 9 3037741 A G - 1 1 A>G T>C +AAATGGACATAAGATG-1_10_121397182_G_A_+ AAATGGACATAAGATG-1 10 121397182 G A + 1 1 G>A G>A +AACTTCTAGAGGTCGT-1_17_39847575_C_A_- AACTTCTAGAGGTCGT-1 17 39847575 C A - 1 1 C>A G>T +AACAGGGTCTTCCACG-1_11_82764598_G_T_+ AACAGGGTCTTCCACG-1 11 82764598 G T + 1 1 G>T G>T +AAGACTCGTTGCTCGG-1_1_59232264_T_C_- AAGACTCGTTGCTCGG-1 1 59232264 T C - 1 1 T>C A>G +AAGAACACAACCGCTG-1_13_55498464_C_T_- AAGAACACAACCGCTG-1 13 55498464 C T - 1 1 C>T G>A +AAACGCTCAGTAGGAC-1_7_28399696_A_T_- AAACGCTCAGTAGGAC-1 7 28399696 A T - 1 1 A>T T>A +AAACGCTCAGTAGGAC-1_19_9985010_C_T_+ AAACGCTCAGTAGGAC-1 19 9985010 C T + 1 1 C>T C>T +AAGACTCGTGGCTAGA-1_17_39847832_G_A_+ AAGACTCGTGGCTAGA-1 17 39847832 G A + 1 1 G>A G>A +AAACCCAAGGTAGACC-1_16_57391683_T_A_- AAACCCAAGGTAGACC-1 16 57391683 T A - 1 1 T>A A>T +AACCCAATCTTGCAAG-1_4_68809309_A_C_- AACCCAATCTTGCAAG-1 4 68809309 A C - 1 1 A>C T>G +AACGAAACATCTCAAG-1_2_103981546_T_C_+ AACGAAACATCTCAAG-1 2 103981546 T C + 1 1 T>C T>C +AACGAAATCGATCCCT-1_1_58500250_T_C_- AACGAAATCGATCCCT-1 1 58500250 T C - 1 1 T>C A>G +AACTTCTCACAACGTT-1_9_3014092_T_A_- AACTTCTCACAACGTT-1 9 3014092 T A - 1 1 T>A A>T +AACTTCTCATGAATAG-1_1_123990949_A_T_- AACTTCTCATGAATAG-1 1 123990949 A T - 1 1 A>T T>A +AAAGTCCTCCTACAAG-1_8_55060711_C_T_+ AAAGTCCTCCTACAAG-1 8 55060711 C T + 1 1 C>T C>T +AACGGGATCCCATACC-1_5_136913008_C_T_+ AACGGGATCCCATACC-1 5 136913008 C T + 1 1 C>T C>T +AAGAACATCTCCGAAA-1_16_35794172_A_T_+ AAGAACATCTCCGAAA-1 16 35794172 A T + 1 1 A>T A>T +AACTTCTAGAGTCCGA-1_14_18269152_G_A_- AACTTCTAGAGTCCGA-1 14 18269152 G A - 1 1 G>A C>T +AAACGAACAAACGGCA-1_16_13835215_C_A_+ AAACGAACAAACGGCA-1 16 13835215 C A + 1 1 C>A C>A +AAAGGATAGGAGCAAA-1_10_128362475_C_A_+ AAAGGATAGGAGCAAA-1 10 128362475 C A + 1 1 C>A C>A +AAAGTCCTCCGATGCG-1_14_93291813_C_G_- AAAGTCCTCCGATGCG-1 14 93291813 C G - 1 1 C>G G>C +AAAGGATGTGCTCGTG-1_7_16915554_T_C_- AAAGGATGTGCTCGTG-1 7 16915554 T C - 1 1 T>C A>G +AACAAAGGTCGCTGCA-1_2_154694029_C_T_+ AACAAAGGTCGCTGCA-1 2 154694029 C T + 1 1 C>T C>T +AAGAACATCATAGGCT-1_6_143208380_C_T_+ AAGAACATCATAGGCT-1 6 143208380 C T + 1 1 C>T C>T +AACCACATCAAAGGTA-1_4_48662844_C_T_+ AACCACATCAAAGGTA-1 4 48662844 C T + 1 1 C>T C>T +AACCAACAGAGGACTC-1_10_83737920_G_T_+ AACCAACAGAGGACTC-1 10 83737920 G T + 1 1 G>T G>T +AAAGGTAAGTGGTTAA-1_17_39847364_G_A_+ AAAGGTAAGTGGTTAA-1 17 39847364 G A + 1 1 G>A G>A +AAAGTCCTCCGATGCG-1_8_93968236_C_T_+ AAAGTCCTCCGATGCG-1 8 93968236 C T + 1 1 C>T C>T +AAAGGTAGTATGTGTC-1_MT_4829_C_T_+ AAAGGTAGTATGTGTC-1 MT 4829 C T + 1 1 C>T C>T +AACCTGATCGCTCATC-1_10_102106876_C_A_+ AACCTGATCGCTCATC-1 10 102106876 C A + 1 1 C>A C>A +AACCATGGTCATACCA-1_6_82647043_T_A_- AACCATGGTCATACCA-1 6 82647043 T A - 1 1 T>A A>T +AACCACATCAAAGGTA-1_4_48662834_C_T_+ AACCACATCAAAGGTA-1 4 48662834 C T + 1 1 C>T C>T +AAATGGAGTATTGGCT-1_17_39847426_T_C_- AAATGGAGTATTGGCT-1 17 39847426 T C - 1 1 T>C A>G +AAGATAGGTCTCACAA-1_16_57391688_T_G_- AAGATAGGTCTCACAA-1 16 57391688 T G - 1 1 T>G A>C +AAAGGTACAAATTAGG-1_10_53905038_G_A_- AAAGGTACAAATTAGG-1 10 53905038 G A - 1 1 G>A C>T +AACCTTTCATTGAAAG-1_16_6938312_C_T_+ AACCTTTCATTGAAAG-1 16 6938312 C T + 1 1 C>T C>T +AAACGCTAGTAGCATA-1_6_110810713_C_A_+ AAACGCTAGTAGCATA-1 6 110810713 C A + 1 1 C>A C>A +AAGAACATCATAGGCT-1_11_57329983_C_T_+ AAGAACATCATAGGCT-1 11 57329983 C T + 1 1 C>T C>T +AAACCCACATGGGATG-1_1_22726032_T_C_- AAACCCACATGGGATG-1 1 22726032 T C - 1 1 T>C A>G +AACCACAAGCTTTGTG-1_4_57717319_C_G_+ AACCACAAGCTTTGTG-1 4 57717319 C G + 1 1 C>G C>G +AAAGGTATCTTTGCGC-1_12_72211816_G_A_- AAAGGTATCTTTGCGC-1 12 72211816 G A - 1 1 G>A C>T +AACCATGTCCTCGCAT-1_6_12315132_G_A_- AACCATGTCCTCGCAT-1 6 12315132 G A - 1 1 G>A C>T +AACTTCTAGACGCAGT-1_14_73362287_G_A_- AACTTCTAGACGCAGT-1 14 73362287 G A - 1 1 G>A C>T +AAACGCTAGGTTACAA-1_2_119018288_G_A_- AAACGCTAGGTTACAA-1 2 119018288 G A - 1 1 G>A C>T +AAAGTCCTCTGCGATA-1_2_51707039_C_T_- AAAGTCCTCTGCGATA-1 2 51707039 C T - 1 1 C>T G>A +AAGACTCTCTGGGCAC-1_17_39847403_T_G_+ AAGACTCTCTGGGCAC-1 17 39847403 T G + 1 1 T>G T>G +AAGAACAAGAAGGGAT-1_9_36878718_A_T_+ AAGAACAAGAAGGGAT-1 9 36878718 A T + 1 1 A>T A>T +AAAGAACAGCCTGAAG-1_18_38186136_T_G_- AAAGAACAGCCTGAAG-1 18 38186136 T G - 1 1 T>G A>C +AAACGCTTCCATAGAC-1_17_39848018_C_T_+ AAACGCTTCCATAGAC-1 17 39848018 C T + 1 1 C>T C>T +AACGAAATCTTGAACG-1_9_75573852_C_T_- AACGAAATCTTGAACG-1 9 75573852 C T - 1 1 C>T G>A +AACCAACTCGATGGAG-1_16_17674669_C_T_- AACCAACTCGATGGAG-1 16 17674669 C T - 1 1 C>T G>A +AAAGTCCAGTCGGCCT-1_13_86045773_G_A_- AAAGTCCAGTCGGCCT-1 13 86045773 G A - 1 1 G>A C>T +AACGTCACAAGAATGT-1_9_50344231_A_T_- AACGTCACAAGAATGT-1 9 50344231 A T - 1 1 A>T T>A +AACTTCTAGTGATGGC-1_1_68907596_T_A_- AACTTCTAGTGATGGC-1 1 68907596 T A - 1 1 T>A A>T +AAATGGATCCCTTGTG-1_5_123071761_C_T_- AAATGGATCCCTTGTG-1 5 123071761 C T - 1 1 C>T G>A +AACGAAAGTTACGTAC-1_1_82900840_C_T_+ AACGAAAGTTACGTAC-1 1 82900840 C T + 1 1 C>T C>T +AAACGAAAGTGGACTG-1_17_83512032_G_A_- AAACGAAAGTGGACTG-1 17 83512032 G A - 1 1 G>A C>T +AACGTCACACGAGGTA-1_9_78478612_T_C_- AACGTCACACGAGGTA-1 9 78478612 T C - 1 1 T>C A>G +AACACACTCTGCGGGT-1_8_72343287_C_G_- AACACACTCTGCGGGT-1 8 72343287 C G - 1 1 C>G G>C +AACAAAGGTACTGCGC-1_2_156388203_G_A_- AACAAAGGTACTGCGC-1 2 156388203 G A - 1 1 G>A C>T +AAGAACACAGCACAGA-1_18_47248806_G_A_- AAGAACACAGCACAGA-1 18 47248806 G A - 1 1 G>A C>T +AACCCAAAGGTATAGT-1_10_83762515_C_T_+ AACCCAAAGGTATAGT-1 10 83762515 C T + 1 1 C>T C>T +AAAGTCCAGTCGGCCT-1_19_5495468_T_C_- AAAGTCCAGTCGGCCT-1 19 5495468 T C - 1 1 T>C A>G +AAACCCACAGCTGTGC-1_11_90278450_C_T_+ AAACCCACAGCTGTGC-1 11 90278450 C T + 1 1 C>T C>T +AAAGTCCAGTATAACG-1_9_75565823_T_G_- AAAGTCCAGTATAACG-1 9 75565823 T G - 1 1 T>G A>C +AACCTGACAATAGTAG-1_10_60666637_A_T_- AACCTGACAATAGTAG-1 10 60666637 A T - 1 1 A>T T>A +AACCTTTCAGAGTAAT-1_4_6395576_C_T_+ AACCTTTCAGAGTAAT-1 4 6395576 C T + 1 1 C>T C>T +AACAAAGTCATTTCCA-1_7_126852424_A_C_- AACAAAGTCATTTCCA-1 7 126852424 A C - 1 1 A>C T>G +AAAGGGCAGGCATGCA-1_9_28996225_T_A_- AAAGGGCAGGCATGCA-1 9 28996225 T A - 1 1 T>A A>T +AAATGGACATAATCCG-1_17_39847458_A_G_+ AAATGGACATAATCCG-1 17 39847458 A G + 1 1 A>G A>G +AACCAACGTAACAGGC-1_18_60777050_C_T_+ AACCAACGTAACAGGC-1 18 60777050 C T + 1 1 C>T C>T +AAGACTCGTGGTACAG-1_12_84918493_G_A_- AAGACTCGTGGTACAG-1 12 84918493 G A - 1 1 G>A C>T +AACCAACTCGATGGAG-1_11_93902331_G_T_+ AACCAACTCGATGGAG-1 11 93902331 G T + 1 1 G>T G>T +AACCACACAGCTTTGA-1_13_94203393_A_G_- AACCACACAGCTTTGA-1 13 94203393 A G - 1 1 A>G T>C +AAACGCTCAGTAGGAC-1_10_72674773_C_T_+ AAACGCTCAGTAGGAC-1 10 72674773 C T + 1 1 C>T C>T +AACAGGGGTATGTCTG-1_19_9985050_C_T_+ AACAGGGGTATGTCTG-1 19 9985050 C T + 1 1 C>T C>T +AAACGAACAGAACTTC-1_2_98667167_C_T_- AAACGAACAGAACTTC-1 2 98667167 C T - 1 1 C>T G>A +AAGACAAGTACTGACT-1_15_54753360_C_T_+ AAGACAAGTACTGACT-1 15 54753360 C T + 1 1 C>T C>T +AAGACTCTCGTCGGGT-1_5_146261004_G_C_+ AAGACTCTCGTCGGGT-1 5 146261004 G C + 1 1 G>C G>C +AACCACAGTACTCGTA-1_15_85462948_C_T_+ AACCACAGTACTCGTA-1 15 85462948 C T + 1 1 C>T C>T +AACAACCGTATGTCTG-1_7_126795451_C_T_- AACAACCGTATGTCTG-1 7 126795451 C T - 1 1 C>T G>A +AAATGGATCCCTTGTG-1_5_123071745_T_C_- AAATGGATCCCTTGTG-1 5 123071745 T C - 1 1 T>C A>G +AACCACATCCTAGCTC-1_5_131096253_G_A_- AACCACATCCTAGCTC-1 5 131096253 G A - 1 1 G>A C>T +AAACGAAAGGTAGTCG-1_15_27730827_G_A_- AAACGAAAGGTAGTCG-1 15 27730827 G A - 1 1 G>A C>T +AAACCCACAATTGCGT-1_2_170360597_C_T_- AAACCCACAATTGCGT-1 2 170360597 C T - 1 1 C>T G>A +AACCTTTCATTCATCT-1_GL456221.1_141398_C_A_- AACCTTTCATTCATCT-1 GL456221.1 141398 C A - 1 1 C>A G>T +AACAAAGAGCCTATTG-1_17_39848100_A_T_+ AACAAAGAGCCTATTG-1 17 39848100 A T + 1 1 A>T A>T +AACCTGACAAGTGACG-1_17_39847099_C_T_+ AACCTGACAAGTGACG-1 17 39847099 C T + 1 1 C>T C>T +AAAGTCCAGTGGGAAA-1_10_121264212_A_G_- AAAGTCCAGTGGGAAA-1 10 121264212 A G - 1 1 A>G T>C +AACGGGACAGTTGTTG-1_18_33128385_A_G_+ AACGGGACAGTTGTTG-1 18 33128385 A G + 1 1 A>G A>G +AAAGAACAGCTTCTAG-1_9_123461940_T_G_+ AAAGAACAGCTTCTAG-1 9 123461940 T G + 1 1 T>G T>G +AACAGGGTCGGTCGGT-1_X_20615464_G_A_- AACAGGGTCGGTCGGT-1 X 20615464 G A - 1 1 G>A C>T +AACCCAAAGCGATCGA-1_12_3441698_C_A_+ AACCCAAAGCGATCGA-1 12 3441698 C A + 1 1 C>A C>A +AACCAACGTGGTATGG-1_19_5492782_G_C_+ AACCAACGTGGTATGG-1 19 5492782 G C + 1 1 G>C G>C +AAGACAAGTCGAATTC-1_19_5493838_C_T_+ AAGACAAGTCGAATTC-1 19 5493838 C T + 1 1 C>T C>T +AACGAAATCCTGTAAG-1_X_87167296_T_C_- AACGAAATCCTGTAAG-1 X 87167296 T C - 1 1 T>C A>G +AACCAACCAGATCCAT-1_15_100260857_C_A_+ AACCAACCAGATCCAT-1 15 100260857 C A + 1 1 C>A C>A +AACGGGAGTGTCATTG-1_9_3035178_A_G_- AACGGGAGTGTCATTG-1 9 3035178 A G - 1 1 A>G T>C +AAGACTCTCGAGTACT-1_11_106199508_G_A_- AAGACTCTCGAGTACT-1 11 106199508 G A - 1 1 G>A C>T +AAGATAGCACGCGTGT-1_10_108583161_C_T_- AAGATAGCACGCGTGT-1 10 108583161 C T - 1 1 C>T G>A +AACGAAACAACTCGAT-1_X_160122520_G_A_- AACGAAACAACTCGAT-1 X 160122520 G A - 1 1 G>A C>T +AACCACAAGCTTTGTG-1_13_99421643_G_A_- AACCACAAGCTTTGTG-1 13 99421643 G A - 1 1 G>A C>T +AACAAGACATCCGTTC-1_5_132512233_A_T_- AACAAGACATCCGTTC-1 5 132512233 A T - 1 1 A>T T>A +AAACGCTCAGTAGGAC-1_10_57516186_G_A_- AAACGCTCAGTAGGAC-1 10 57516186 G A - 1 1 G>A C>T +AAAGAACAGCCTGAAG-1_11_98009391_G_A_- AAAGAACAGCCTGAAG-1 11 98009391 G A - 1 1 G>A C>T +AAAGTCCTCCCAGCGA-1_9_3035199_C_T_- AAAGTCCTCCCAGCGA-1 9 3035199 C T - 1 1 C>T G>A +AAGAACAGTAGGACTG-1_7_4133995_T_A_+ AAGAACAGTAGGACTG-1 7 4133995 T A + 1 1 T>A T>A +AAAGTGACACGACGAA-1_8_111345384_G_T_- AAAGTGACACGACGAA-1 8 111345384 G T - 1 1 G>T C>A +AAACCCACATATCTCT-1_5_146261122_A_G_+ AAACCCACATATCTCT-1 5 146261122 A G + 1 1 A>G A>G +AAAGTCCTCCAACTGA-1_10_67886365_G_A_- AAAGTCCTCCAACTGA-1 10 67886365 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_7_84615155_G_A_- AAACGCTCAGTAGGAC-1 7 84615155 G A - 1 1 G>A C>T +AACAACCGTTGCAACT-1_10_3946226_G_A_+ AACAACCGTTGCAACT-1 10 3946226 G A + 1 1 G>A G>A +AAGACTCGTATCTCTT-1_9_3037748_A_T_- AAGACTCGTATCTCTT-1 9 3037748 A T - 1 1 A>T T>A +AACCATGTCATCGCTC-1_10_116425459_G_T_- AACCATGTCATCGCTC-1 10 116425459 G T - 1 1 G>T C>A +AAACGCTCAGTAGGAC-1_18_25750993_C_T_- AAACGCTCAGTAGGAC-1 18 25750993 C T - 1 1 C>T G>A +AAAGGATTCTAGGCAT-1_6_137259188_C_T_+ AAAGGATTCTAGGCAT-1 6 137259188 C T + 1 1 C>T C>T +AAACGAAAGTGGACTG-1_17_39848018_C_T_+ AAACGAAAGTGGACTG-1 17 39848018 C T + 1 1 C>T C>T +AAATGGAAGTTTCGGT-1_16_42181432_C_T_+ AAATGGAAGTTTCGGT-1 16 42181432 C T + 1 1 C>T C>T +AAACCCACAATCTCTT-1_Y_90816411_G_A_+ AAACCCACAATCTCTT-1 Y 90816411 G A + 1 1 G>A G>A +AACGTCATCGTGGCGT-1_17_33952457_G_A_- AACGTCATCGTGGCGT-1 17 33952457 G A - 1 1 G>A C>T +AACAAAGGTAGGGTAC-1_10_128492234_G_A_- AACAAAGGTAGGGTAC-1 10 128492234 G A - 1 1 G>A C>T +AACAGGGTCGGTCGGT-1_16_57391680_C_T_- AACAGGGTCGGTCGGT-1 16 57391680 C T - 1 1 C>T G>A +AAACCCACAAAGACGC-1_13_69815899_A_G_+ AAACCCACAAAGACGC-1 13 69815899 A G + 1 1 A>G A>G +AAGACAACACCGCTGA-1_18_76305128_C_T_+ AAGACAACACCGCTGA-1 18 76305128 C T + 1 1 C>T C>T +AAAGAACTCCCAGGCA-1_7_116334101_G_A_- AAAGAACTCCCAGGCA-1 7 116334101 G A - 1 1 G>A C>T +AAATGGATCCCTTGTG-1_18_62504362_A_G_- AAATGGATCCCTTGTG-1 18 62504362 A G - 1 1 A>G T>C +AACACACGTCCGAAAG-1_9_37544768_G_A_- AACACACGTCCGAAAG-1 9 37544768 G A - 1 1 G>A C>T +AACCTTTAGATCGGTG-1_14_38955295_C_T_- AACCTTTAGATCGGTG-1 14 38955295 C T - 1 1 C>T G>A +AACACACAGGATCACG-1_2_101871034_G_A_- AACACACAGGATCACG-1 2 101871034 G A - 1 1 G>A C>T +AACCAACTCCCAAGCG-1_5_146261076_T_C_+ AACCAACTCCCAAGCG-1 5 146261076 T C + 1 1 T>C T>C +AAGACTCGTGGCTAGA-1_5_147078903_C_T_+ AAGACTCGTGGCTAGA-1 5 147078903 C T + 1 1 C>T C>T +AACCAACTCGATGGAG-1_17_25888671_C_T_- AACCAACTCGATGGAG-1 17 25888671 C T - 1 1 C>T G>A +AAGACTCTCGAGTACT-1_6_120795350_G_A_- AAGACTCTCGAGTACT-1 6 120795350 G A - 1 1 G>A C>T +AAAGTGAAGCCATATC-1_8_104640059_C_T_- AAAGTGAAGCCATATC-1 8 104640059 C T - 1 1 C>T G>A +AACCCAACAAATCGTC-1_5_124888351_A_C_+ AACCCAACAAATCGTC-1 5 124888351 A C + 1 1 A>C A>C +AACGGGAGTAAGGCCA-1_9_3037735_T_C_- AACGGGAGTAAGGCCA-1 9 3037735 T C - 1 1 T>C A>G +AACCACAAGCTTTGTG-1_18_35591566_C_T_+ AACCACAAGCTTTGTG-1 18 35591566 C T + 1 1 C>T C>T +AACGTCAAGCGAGGAG-1_19_7425976_A_G_- AACGTCAAGCGAGGAG-1 19 7425976 A G - 1 1 A>G T>C +AACCTGATCTAGTACG-1_19_4114511_G_T_- AACCTGATCTAGTACG-1 19 4114511 G T - 1 1 G>T C>A +AACAACCAGACGACTG-1_9_70554621_A_C_+ AACAACCAGACGACTG-1 9 70554621 A C + 1 1 A>C A>C +AAATGGAAGCCAAGGT-1_12_102568685_A_G_- AAATGGAAGCCAAGGT-1 12 102568685 A G - 1 1 A>G T>C +AAACCCAGTGGTAATA-1_X_71824586_C_T_+ AAACCCAGTGGTAATA-1 X 71824586 C T + 1 1 C>T C>T +AACGTCATCTGGCTGG-1_11_59211507_G_A_- AACGTCATCTGGCTGG-1 11 59211507 G A - 1 1 G>A C>T +AACCTGACAAACCACT-1_9_107945377_C_A_+ AACCTGACAAACCACT-1 9 107945377 C A + 1 1 C>A C>A +AAAGTCCGTGACTGTT-1_17_24721663_C_T_+ AAAGTCCGTGACTGTT-1 17 24721663 C T + 1 1 C>T C>T +AAGAACACAACTGATC-1_9_66949354_C_T_+ AAGAACACAACTGATC-1 9 66949354 C T + 1 1 C>T C>T +AAAGGTAGTCGAATTC-1_MT_7444_G_A_+ AAAGGTAGTCGAATTC-1 MT 7444 G A + 1 1 G>A G>A +AAATGGAGTAGTGTGG-1_16_57391545_G_C_- AAATGGAGTAGTGTGG-1 16 57391545 G C - 1 1 G>C C>G +AAACGCTCAGTAGGAC-1_2_126709188_G_T_- AAACGCTCAGTAGGAC-1 2 126709188 G T - 1 1 G>T C>A +AACGAAAAGACCTGGA-1_5_146261113_T_C_+ AACGAAAAGACCTGGA-1 5 146261113 T C + 1 1 T>C T>C +AAGATAGCACGCGTGT-1_17_70974144_G_A_- AAGATAGCACGCGTGT-1 17 70974144 G A - 1 1 G>A C>T +AACAAAGTCACGATAC-1_12_72212413_G_A_- AACAAAGTCACGATAC-1 12 72212413 G A - 1 1 G>A C>T +AACACACTCTGCGGAC-1_7_126765432_T_G_+ AACACACTCTGCGGAC-1 7 126765432 T G + 1 1 T>G T>G +AACAAAGTCCTACCGT-1_16_57391517_G_T_- AACAAAGTCCTACCGT-1 16 57391517 G T - 1 1 G>T C>A +AACCAACTCAGTGGGA-1_4_102971996_C_T_+ AACCAACTCAGTGGGA-1 4 102971996 C T + 1 1 C>T C>T +AACGGGAGTCCAGGTC-1_11_53416584_C_T_+ AACGGGAGTCCAGGTC-1 11 53416584 C T + 1 1 C>T C>T +AAACCCACACCGTGGT-1_15_83126090_T_G_- AAACCCACACCGTGGT-1 15 83126090 T G - 1 1 T>G A>C +AAAGAACAGCTAGATA-1_18_34937667_A_C_- AAAGAACAGCTAGATA-1 18 34937667 A C - 1 1 A>C T>G +AAACGAAAGCGAACTG-1_15_79672689_C_T_+ AAACGAAAGCGAACTG-1 15 79672689 C T + 1 1 C>T C>T +AAAGGTAGTATGTGTC-1_8_94675615_T_G_- AAAGGTAGTATGTGTC-1 8 94675615 T G - 1 1 T>G A>C +AACAACCAGTAATACG-1_9_78478618_G_A_- AACAACCAGTAATACG-1 9 78478618 G A - 1 1 G>A C>T +AAAGTCCCACCACATA-1_1_72852388_G_A_+ AAAGTCCCACCACATA-1 1 72852388 G A + 1 1 G>A G>A +AAACCCACAATTGCGT-1_2_170360595_A_T_- AAACCCACAATTGCGT-1 2 170360595 A T - 1 1 A>T T>A +AACGAAACAAATACAG-1_7_30415664_T_C_+ AACGAAACAAATACAG-1 7 30415664 T C + 1 1 T>C T>C +AAGATAGAGCCAACCC-1_7_4794123_A_G_+ AAGATAGAGCCAACCC-1 7 4794123 A G + 1 1 A>G A>G +AACCCAAAGCAAATGT-1_X_136823488_G_A_+ AACCCAAAGCAAATGT-1 X 136823488 G A + 1 1 G>A G>A +AACTTCTAGCAGATAT-1_19_5802632_T_C_- AACTTCTAGCAGATAT-1 19 5802632 T C - 1 6 T>C A>G +AACGTCATCCATCTAT-1_2_98666636_A_G_- AACGTCATCCATCTAT-1 2 98666636 A G - 1 1 A>G T>C +AACTTCTCATGAATAG-1_11_5071610_A_T_- AACTTCTCATGAATAG-1 11 5071610 A T - 1 1 A>T T>A +AACAACCAGTTACTCG-1_15_74995013_T_A_- AACAACCAGTTACTCG-1 15 74995013 T A - 1 1 T>A A>T +AAACCCAGTCAAATCC-1_4_129111883_G_A_- AAACCCAGTCAAATCC-1 4 129111883 G A - 1 1 G>A C>T +AAACCCACAAAGACGC-1_2_75898462_T_C_+ AAACCCACAAAGACGC-1 2 75898462 T C + 1 1 T>C T>C +AAGAACAGTTGGAGGT-1_5_81795205_C_T_- AAGAACAGTTGGAGGT-1 5 81795205 C T - 1 1 C>T G>A +AACAAGATCATCCTGC-1_18_23499169_G_T_+ AACAAGATCATCCTGC-1 18 23499169 G T + 1 1 G>T G>T +AAGACTCGTTGCTCGG-1_MT_10236_T_A_+ AAGACTCGTTGCTCGG-1 MT 10236 T A + 1 1 T>A T>A +AACGTCATCGTGGCGT-1_17_39847531_T_C_- AACGTCATCGTGGCGT-1 17 39847531 T C - 1 1 T>C A>G +AAATGGAAGCAGATAT-1_2_126709188_G_T_- AAATGGAAGCAGATAT-1 2 126709188 G T - 1 1 G>T C>A +AACAAGATCTGCTTTA-1_1_171873566_C_G_+ AACAAGATCTGCTTTA-1 1 171873566 C G + 1 1 C>G C>G +AACGTCAGTAGTCTGT-1_17_39847993_A_G_+ AACGTCAGTAGTCTGT-1 17 39847993 A G + 1 1 A>G A>G +AACTTCTCACACGTGC-1_6_110924580_C_A_+ AACTTCTCACACGTGC-1 6 110924580 C A + 1 1 C>A C>A +AACAACCGTATGTCTG-1_17_39848100_A_T_+ AACAACCGTATGTCTG-1 17 39848100 A T + 1 1 A>T A>T +AACACACGTGTTGCCG-1_2_20637149_A_G_+ AACACACGTGTTGCCG-1 2 20637149 A G + 1 1 A>G A>G +AACAAAGAGGCATCAG-1_2_98662877_T_C_+ AACAAAGAGGCATCAG-1 2 98662877 T C + 1 1 T>C T>C +AACTTCTCACTAACGT-1_10_108262591_G_A_+ AACTTCTCACTAACGT-1 10 108262591 G A + 1 1 G>A G>A +AACCTTTGTCTCAGGC-1_17_39847774_C_T_+ AACCTTTGTCTCAGGC-1 17 39847774 C T + 1 1 C>T C>T +AACCTGACACTCTGCT-1_16_57391685_G_A_- AACCTGACACTCTGCT-1 16 57391685 G A - 1 1 G>A C>T +AAAGGATGTGCGTCGT-1_19_6059408_C_T_+ AAAGGATGTGCGTCGT-1 19 6059408 C T + 1 1 C>T C>T +AAACCCACATATCTGG-1_11_99052532_C_T_+ AAACCCACATATCTGG-1 11 99052532 C T + 1 1 C>T C>T +AAGAACATCCTGGTCT-1_9_21921239_G_A_- AAGAACATCCTGGTCT-1 9 21921239 G A - 1 1 G>A C>T +AAATGGAAGCAGATAT-1_1_181896596_C_T_- AAATGGAAGCAGATAT-1 1 181896596 C T - 1 1 C>T G>A +AAAGTCCCAACCAGAG-1_17_33829669_C_A_+ AAAGTCCCAACCAGAG-1 17 33829669 C A + 1 1 C>A C>A +AAAGGTATCCCGTAAA-1_3_117782059_G_A_- AAAGGTATCCCGTAAA-1 3 117782059 G A - 1 1 G>A C>T +AAACGAACAACTGGTT-1_18_34864885_A_G_+ AAACGAACAACTGGTT-1 18 34864885 A G + 1 1 A>G A>G +AAATGGAGTACCGGAA-1_X_136838179_A_G_+ AAATGGAGTACCGGAA-1 X 136838179 A G + 1 2 A>G A>G +AAACGCTCAGTAGGAC-1_12_116373433_C_T_+ AAACGCTCAGTAGGAC-1 12 116373433 C T + 1 1 C>T C>T +AACAAAGAGCCGATTT-1_1_180028775_C_T_+ AACAAAGAGCCGATTT-1 1 180028775 C T + 1 1 C>T C>T +AACGAAACAATACAGA-1_3_30819953_C_T_+ AACGAAACAATACAGA-1 3 30819953 C T + 1 1 C>T C>T +AACAACCCAGACGGAT-1_18_68116940_A_C_+ AACAACCCAGACGGAT-1 18 68116940 A C + 1 1 A>C A>C +AAGACTCAGTGAATAC-1_10_106518598_G_C_+ AAGACTCAGTGAATAC-1 10 106518598 G C + 1 1 G>C G>C +AAGATAGGTACGCGTC-1_12_99645608_T_C_+ AAGATAGGTACGCGTC-1 12 99645608 T C + 1 1 T>C T>C +AAACGCTTCAAAGGAT-1_5_146261076_T_C_+ AAACGCTTCAAAGGAT-1 5 146261076 T C + 1 1 T>C T>C +AACCTGATCGTGCTCT-1_7_88115248_T_A_+ AACCTGATCGTGCTCT-1 7 88115248 T A + 1 1 T>A T>A +AAAGGATCACGTAGTT-1_5_146261106_C_G_+ AAAGGATCACGTAGTT-1 5 146261106 C G + 1 1 C>G C>G +AACAAAGAGAAGTCCG-1_16_20543870_C_T_+ AACAAAGAGAAGTCCG-1 16 20543870 C T + 1 1 C>T C>T +AAGACTCTCATTGGTG-1_9_3035815_T_C_- AAGACTCTCATTGGTG-1 9 3035815 T C - 1 1 T>C A>G +AAGACAAAGGATACCG-1_6_38553161_T_C_- AAGACAAAGGATACCG-1 6 38553161 T C - 1 1 T>C A>G +AAGACAACAAATCAGA-1_5_147111218_C_T_+ AAGACAACAAATCAGA-1 5 147111218 C T + 1 1 C>T C>T +AAACCCACATGGGATG-1_3_107438500_G_A_- AAACCCACATGGGATG-1 3 107438500 G A - 1 1 G>A C>T +AACCAACGTCACCCTT-1_9_3000560_T_C_- AACCAACGTCACCCTT-1 9 3000560 T C - 1 1 T>C A>G +AAGAACAAGCTCGACC-1_3_80705810_A_T_- AAGAACAAGCTCGACC-1 3 80705810 A T - 1 1 A>T T>A +AAGAACAGTAGGACTG-1_7_4133994_A_C_+ AAGAACAGTAGGACTG-1 7 4133994 A C + 1 1 A>C A>C +AAAGTCCTCGAACACT-1_2_5379370_T_G_- AAAGTCCTCGAACACT-1 2 5379370 T G - 1 1 T>G A>C +AAAGTCCTCTTCCCGA-1_11_77978982_G_T_+ AAAGTCCTCTTCCCGA-1 11 77978982 G T + 1 1 G>T G>T +AACACACCATCGTCCT-1_7_140106197_C_T_- AACACACCATCGTCCT-1 7 140106197 C T - 1 1 C>T G>A +AACGTCAAGCGAGGAG-1_3_90614241_C_T_+ AACGTCAAGCGAGGAG-1 3 90614241 C T + 1 1 C>T C>T +AAAGGTACAGGACAGT-1_17_56642796_A_C_+ AAAGGTACAGGACAGT-1 17 56642796 A C + 1 1 A>C A>C +AAAGGGCCACCAGTTA-1_6_124913735_G_T_- AAAGGGCCACCAGTTA-1 6 124913735 G T - 1 1 G>T C>A +AAGACAATCTTAGGAC-1_2_98662468_G_T_+ AAGACAATCTTAGGAC-1 2 98662468 G T + 1 1 G>T G>T +AACCTTTAGGTGCATG-1_9_103028891_A_C_+ AACCTTTAGGTGCATG-1 9 103028891 A C + 1 1 A>C A>C AAACGCTGTCAACACT-1_19_5802163_G_T_- AAACGCTGTCAACACT-1 19 5802163 G T - 1 1 G>T C>A +AAATGGAAGCAGATAT-1_16_59978410_T_A_- AAATGGAAGCAGATAT-1 16 59978410 T A - 1 1 T>A A>T +AACGGGAAGTTACTCG-1_5_121205431_C_T_+ AACGGGAAGTTACTCG-1 5 121205431 C T + 1 1 C>T C>T +AAGACAAAGTCGAATA-1_17_39848018_C_T_+ AAGACAAAGTCGAATA-1 17 39848018 C T + 1 1 C>T C>T +AACCAACCACGGTAGA-1_17_39847458_A_G_+ AACCAACCACGGTAGA-1 17 39847458 A G + 1 1 A>G A>G +AAACCCATCGGATAAA-1_15_75564983_T_C_- AAACCCATCGGATAAA-1 15 75564983 T C - 1 1 T>C A>G +AAACGCTGTGGACAGT-1_X_95056750_A_G_- AAACGCTGTGGACAGT-1 X 95056750 A G - 1 1 A>G T>C +AAGACTCAGAAGCTCG-1_10_32526844_T_C_- AAGACTCAGAAGCTCG-1 10 32526844 T C - 1 1 T>C A>G +AAGACTCGTGCGGTAA-1_18_60778439_A_G_+ AAGACTCGTGCGGTAA-1 18 60778439 A G + 1 1 A>G A>G +AAAGTCCTCCTACAAG-1_7_4785278_G_A_- AAAGTCCTCCTACAAG-1 7 4785278 G A - 1 1 G>A C>T +AAACCCAAGATTGCGG-1_16_28706117_G_A_- AAACCCAAGATTGCGG-1 16 28706117 G A - 1 1 G>A C>T +AACAACCGTAGCCCTG-1_9_44920700_T_C_- AACAACCGTAGCCCTG-1 9 44920700 T C - 1 1 T>C A>G +AACTTCTCACAACGTT-1_9_3014090_C_A_- AACTTCTCACAACGTT-1 9 3014090 C A - 1 1 C>A G>T +AAGAACACACAGCCTG-1_8_40492619_G_A_- AAGAACACACAGCCTG-1 8 40492619 G A - 1 1 G>A C>T +AAGAACATCCTGGTCT-1_4_34811818_T_C_- AAGAACATCCTGGTCT-1 4 34811818 T C - 1 1 T>C A>G +AAAGGGCTCTCACTCG-1_10_100070553_G_A_+ AAAGGGCTCTCACTCG-1 10 100070553 G A + 1 1 G>A G>A +AAAGAACTCGTGGGAA-1_3_157548067_C_T_+ AAAGAACTCGTGGGAA-1 3 157548067 C T + 1 1 C>T C>T +AAAGAACAGTCCCGGT-1_5_77349339_T_C_- AAAGAACAGTCCCGGT-1 5 77349339 T C - 1 1 T>C A>G +AACCACAAGCTTTGTG-1_6_18853873_G_T_+ AACCACAAGCTTTGTG-1 6 18853873 G T + 1 1 G>T G>T +AAGAACAAGGTCGAGT-1_7_29784632_T_A_+ AAGAACAAGGTCGAGT-1 7 29784632 T A + 1 1 T>A T>A AACGAAATCCCGAAAT-1_19_32672584_G_A_- AACGAAATCCCGAAAT-1 19 32672584 G A - 1 1 G>A C>T -AAGAACAGTCGGCTAC-1_19_7198341_G_A_- AAGAACAGTCGGCTAC-1 19 7198341 G A - 1 1 G>A C>T -AAAGGATGTGCGTCGT-1_19_6059408_C_T_+ AAAGGATGTGCGTCGT-1 19 6059408 C T + 1 1 C>T C>T -AAACCCAGTCAAATCC-1_19_5802634_C_A_- AAACCCAGTCAAATCC-1 19 5802634 C A - 1 1 C>A G>T -AACCTTTAGCGTGCTC-1_19_5802657_G_A_- AACCTTTAGCGTGCTC-1 19 5802657 G A - 1 7 G>A C>T -AAGATAGGTCATCAGT-1_19_5801773_C_T_- AAGATAGGTCATCAGT-1 19 5801773 C T - 1 1 C>T G>A -AACGAAACATCTCAAG-1_19_31121431_C_A_- AACGAAACATCTCAAG-1 19 31121431 C A - 1 1 C>A G>T -AACAACCAGACGACTG-1_19_6530848_C_A_- AACAACCAGACGACTG-1 19 6530848 C A - 1 1 C>A G>T -AACAAGAAGCAATTAG-1_19_5802647_C_T_- AACAAGAAGCAATTAG-1 19 5802647 C T - 1 5 C>T G>A -AACCCAAAGCGATCGA-1_19_32672827_A_G_- AACCCAAAGCGATCGA-1 19 32672827 A G - 1 1 A>G T>C -AACGGGAAGTTGCCCG-1_19_5801601_C_G_- AACGGGAAGTTGCCCG-1 19 5801601 C G - 1 1 C>G G>C -AAACGAATCACTTCTA-1_19_7215279_T_C_- AAACGAATCACTTCTA-1 19 7215279 T C - 1 1 T>C A>G -AAACGAAGTGCTCTCT-1_19_5799948_C_T_- AAACGAAGTGCTCTCT-1 19 5799948 C T - 1 1 C>T G>A -AAACCCAAGATTGCGG-1_19_10629660_C_T_+ AAACCCAAGATTGCGG-1 19 10629660 C T + 1 1 C>T C>T -AAACCCACATATCTGG-1_19_40550455_T_C_- AAACCCACATATCTGG-1 19 40550455 T C - 1 1 T>C A>G -AAAGAACGTCTGTGTA-1_19_5802086_G_A_- AAAGAACGTCTGTGTA-1 19 5802086 G A - 1 1 G>A C>T -AAGAACAGTTGGAGGT-1_19_5664749_C_G_- AAGAACAGTTGGAGGT-1 19 5664749 C G - 1 1 C>G G>C -AAAGTCCTCCGATGCG-1_19_5802658_C_T_- AAAGTCCTCCGATGCG-1 19 5802658 C T - 1 19 C>T G>A -AACAAAGTCGTTCGCT-1_19_36917579_A_C_- AACAAAGTCGTTCGCT-1 19 36917579 A C - 1 1 A>C T>G -AAACCCACAGCTAACT-1_19_9984967_C_T_+ AAACCCACAGCTAACT-1 19 9984967 C T + 1 1 C>T C>T +AAAGTGAAGACATAGT-1_16_57391598_G_A_- AAAGTGAAGACATAGT-1 16 57391598 G A - 1 1 G>A C>T +AAAGGGCCACTGAATC-1_13_74339621_T_C_- AAAGGGCCACTGAATC-1 13 74339621 T C - 1 1 T>C A>G +AAACGCTGTAGAGGAA-1_4_152391750_A_G_- AAACGCTGTAGAGGAA-1 4 152391750 A G - 1 1 A>G T>C +AAAGTCCTCCGATGCG-1_8_128685900_C_T_+ AAAGTCCTCCGATGCG-1 8 128685900 C T + 1 1 C>T C>T +AACGTCACATAGATGA-1_2_151561635_C_T_+ AACGTCACATAGATGA-1 2 151561635 C T + 1 1 C>T C>T +AACGAAAGTCCAAATC-1_6_77592276_G_A_- AACGAAAGTCCAAATC-1 6 77592276 G A - 1 1 G>A C>T +AAAGTCCAGTCGGCCT-1_5_67619329_G_A_- AAAGTCCAGTCGGCCT-1 5 67619329 G A - 1 1 G>A C>T +AACCTTTTCCGTGTGG-1_9_3038038_T_C_- AACCTTTTCCGTGTGG-1 9 3038038 T C - 1 1 T>C A>G +AAACGAAAGGCTTTCA-1_12_111541452_G_T_+ AAACGAAAGGCTTTCA-1 12 111541452 G T + 1 1 G>T G>T +AACTTCTTCTTCCCGA-1_9_3014244_A_T_- AACTTCTTCTTCCCGA-1 9 3014244 A T - 1 1 A>T T>A +AAACGAACAACCGACC-1_7_16915467_G_T_- AAACGAACAACCGACC-1 7 16915467 G T - 1 1 G>T C>A +AACGAAACAACTGAAA-1_14_77984499_G_A_+ AACGAAACAACTGAAA-1 14 77984499 G A + 1 1 G>A G>A +AAACGAAGTACAGTTC-1_8_15894545_T_A_- AAACGAAGTACAGTTC-1 8 15894545 T A - 1 1 T>A A>T +AACCAACGTAGGTAGC-1_6_136097662_G_A_- AACCAACGTAGGTAGC-1 6 136097662 G A - 1 1 G>A C>T +AAATGGACACCATATG-1_2_98666781_G_A_- AAATGGACACCATATG-1 2 98666781 G A - 1 1 G>A C>T +AACCAACGTCTACAGT-1_17_39848018_C_T_+ AACCAACGTCTACAGT-1 17 39848018 C T + 1 1 C>T C>T +AACAGGGTCTTCCACG-1_16_67099653_T_A_- AACAGGGTCTTCCACG-1 16 67099653 T A - 1 1 T>A A>T +AAACCCACATATCTGG-1_11_88210763_A_G_+ AAACCCACATATCTGG-1 11 88210763 A G + 1 1 A>G A>G +AACGAAATCCTGTAAG-1_11_36677865_G_A_- AACGAAATCCTGTAAG-1 11 36677865 G A - 1 1 G>A C>T +AACGAAACACGCTGCA-1_17_87433641_G_A_- AACGAAACACGCTGCA-1 17 87433641 G A - 1 1 G>A C>T +AAAGGTACACAGTCAT-1_12_44311838_C_T_+ AAAGGTACACAGTCAT-1 12 44311838 C T + 1 1 C>T C>T +AACCTGATCGCTCATC-1_16_6117787_C_A_+ AACCTGATCGCTCATC-1 16 6117787 C A + 1 1 C>A C>A +AACGGGACAGTTGTTG-1_1_21704394_G_A_- AACGGGACAGTTGTTG-1 1 21704394 G A - 1 1 G>A C>T +AACACACTCCTTCACG-1_5_23788348_T_A_+ AACACACTCCTTCACG-1 5 23788348 T A + 1 1 T>A T>A +AACCTGACAGCAGTGA-1_2_80580956_A_C_- AACCTGACAGCAGTGA-1 2 80580956 A C - 1 1 A>C T>G +AAAGTCCGTGACTGTT-1_6_102463819_C_G_- AAAGTCCGTGACTGTT-1 6 102463819 C G - 1 1 C>G G>C +AACACACAGTGCACAG-1_10_34404205_G_A_- AACACACAGTGCACAG-1 10 34404205 G A - 1 1 G>A C>T +AACAACCGTTGCAACT-1_10_3946286_A_G_+ AACAACCGTTGCAACT-1 10 3946286 A G + 1 1 A>G A>G +AACCTTTAGCGTGCTC-1_3_37502050_T_C_+ AACCTTTAGCGTGCTC-1 3 37502050 T C + 1 1 T>C T>C +AAACGAAAGGTAGTCG-1_1_153119063_A_T_+ AAACGAAAGGTAGTCG-1 1 153119063 A T + 1 1 A>T A>T +AAGATAGCATGGGAAC-1_16_57391683_T_A_- AAGATAGCATGGGAAC-1 16 57391683 T A - 1 1 T>A A>T +AAGAACACAAAGGTTA-1_14_93141770_G_A_- AAGAACACAAAGGTTA-1 14 93141770 G A - 1 1 G>A C>T +AAGACAACAGAGAATT-1_7_46084071_C_T_+ AAGACAACAGAGAATT-1 7 46084071 C T + 1 1 C>T C>T +AAAGAACAGTCGCGAA-1_2_98666972_A_C_- AAAGAACAGTCGCGAA-1 2 98666972 A C - 1 1 A>C T>G +AACCTGAGTCGATTAC-1_14_66153383_G_A_- AACCTGAGTCGATTAC-1 14 66153383 G A - 1 1 G>A C>T +AACAAGACAGATCCTA-1_1_86126469_G_T_+ AACAAGACAGATCCTA-1 1 86126469 G T + 1 1 G>T G>T +AACAAGAGTTACCTGA-1_9_3014275_C_T_- AACAAGAGTTACCTGA-1 9 3014275 C T - 1 1 C>T G>A +AAAGGGCTCTGCTAGA-1_9_114721816_C_T_+ AAAGGGCTCTGCTAGA-1 9 114721816 C T + 1 1 C>T C>T +AAAGAACAGCCTGAAG-1_3_136937501_T_A_+ AAAGAACAGCCTGAAG-1 3 136937501 T A + 1 1 T>A T>A +AAGAACAGTTGCTCCT-1_4_116990354_T_A_- AAGAACAGTTGCTCCT-1 4 116990354 T A - 1 1 T>A A>T +AACCATGGTCTACAAC-1_9_70554621_A_C_+ AACCATGGTCTACAAC-1 9 70554621 A C + 1 1 A>C A>C +AAACCCAGTGCTCGTG-1_17_39848018_C_T_+ AAACCCAGTGCTCGTG-1 17 39848018 C T + 1 1 C>T C>T +AAGAACAGTTGCAAGG-1_1_180165446_C_T_+ AAGAACAGTTGCAAGG-1 1 180165446 C T + 1 1 C>T C>T +AAAGGATGTTTCGGCG-1_17_39847435_A_G_+ AAAGGATGTTTCGGCG-1 17 39847435 A G + 1 1 A>G A>G +AAAGGATAGGTTCCAT-1_6_55678252_G_A_- AAAGGATAGGTTCCAT-1 6 55678252 G A - 1 1 G>A C>T +AAGACTCTCCTCTAAT-1_7_28399177_A_G_+ AAGACTCTCCTCTAAT-1 7 28399177 A G + 1 1 A>G A>G +AAACGAAAGTAGGTTA-1_3_139019928_A_G_- AAACGAAAGTAGGTTA-1 3 139019928 A G - 1 1 A>G T>C +AACCTTTCAGTAGAGC-1_2_29713016_A_G_+ AACCTTTCAGTAGAGC-1 2 29713016 A G + 1 1 A>G A>G +AACAACCCAAGCACCC-1_16_57391454_T_C_- AACAACCCAAGCACCC-1 16 57391454 T C - 1 1 T>C A>G +AACCCAAGTATCGATC-1_8_50767559_C_A_- AACCCAAGTATCGATC-1 8 50767559 C A - 1 1 C>A G>T +AAAGTGACAACTAGAA-1_2_70691437_C_G_+ AAAGTGACAACTAGAA-1 2 70691437 C G + 1 1 C>G C>G +AAGACAATCTCGACCT-1_17_39847403_T_G_+ AAGACAATCTCGACCT-1 17 39847403 T G + 1 2 T>G T>G +AACCAACCAGTCGCTG-1_X_10596447_C_T_+ AACCAACCAGTCGCTG-1 X 10596447 C T + 1 1 C>T C>T +AAACGCTTCGGTTAGT-1_11_53429138_A_G_- AAACGCTTCGGTTAGT-1 11 53429138 A G - 1 1 A>G T>C +AACCAACGTTTGACAC-1_19_9984968_T_A_+ AACCAACGTTTGACAC-1 19 9984968 T A + 1 1 T>A T>A +AAAGTCCCATGTGGCC-1_6_141843446_C_T_- AAAGTCCCATGTGGCC-1 6 141843446 C T - 1 1 C>T G>A +AAAGGTATCTCTGACC-1_11_104333730_G_T_- AAAGGTATCTCTGACC-1 11 104333730 G T - 1 1 G>T C>A +AACCTGAAGTCCCAGC-1_10_117814658_G_A_- AACCTGAAGTCCCAGC-1 10 117814658 G A - 1 1 G>A C>T +AAAGTGACATCTGTTT-1_2_143950499_T_C_- AAAGTGACATCTGTTT-1 2 143950499 T C - 1 1 T>C A>G +AACTTCTGTGCATGTT-1_16_57391683_T_A_- AACTTCTGTGCATGTT-1 16 57391683 T A - 1 1 T>A A>T +AAAGTCCCAACCAGAG-1_14_65980936_C_G_+ AAAGTCCCAACCAGAG-1 14 65980936 C G + 1 1 C>G C>G +AAACGAAGTCTCAGAT-1_9_3000608_C_A_- AAACGAAGTCTCAGAT-1 9 3000608 C A - 1 1 C>A G>T +AAATGGACACCTGCTT-1_8_13940270_A_T_+ AAATGGACACCTGCTT-1 8 13940270 A T + 1 1 A>T A>T +AAAGAACTCGGCTTCT-1_18_46790413_C_T_+ AAAGAACTCGGCTTCT-1 18 46790413 C T + 1 1 C>T C>T +AACCACATCGTCAGAT-1_5_146261106_C_G_+ AACCACATCGTCAGAT-1 5 146261106 C G + 1 1 C>G C>G +AACTTCTTCTTCACGC-1_X_20699329_C_T_+ AACTTCTTCTTCACGC-1 X 20699329 C T + 1 1 C>T C>T +AAGATAGAGCTTGTGT-1_2_120555236_T_C_- AAGATAGAGCTTGTGT-1 2 120555236 T C - 1 1 T>C A>G +AAGAACACACCGTGCA-1_14_18269249_G_A_- AAGAACACACCGTGCA-1 14 18269249 G A - 1 1 G>A C>T +AACTTCTTCTTCCCGA-1_2_13581685_C_T_+ AACTTCTTCTTCCCGA-1 2 13581685 C T + 1 1 C>T C>T +AAAGTGAGTATCACCA-1_16_57391683_T_A_- AAAGTGAGTATCACCA-1 16 57391683 T A - 1 1 T>A A>T +AAACCCACAATCTCTT-1_19_46701794_T_G_+ AAACCCACAATCTCTT-1 19 46701794 T G + 1 1 T>G T>G +AAGAACAGTAAGATAC-1_X_101322629_G_T_+ AAGAACAGTAAGATAC-1 X 101322629 G T + 1 1 G>T G>T +AACAACCAGTAATACG-1_12_78521517_G_A_+ AACAACCAGTAATACG-1 12 78521517 G A + 1 1 G>A G>A +AAAGGTATCAGTCATG-1_12_78350929_T_C_+ AAAGGTATCAGTCATG-1 12 78350929 T C + 1 1 T>C T>C +AACCCAAAGATTGTGA-1_17_39847458_A_G_+ AACCCAAAGATTGTGA-1 17 39847458 A G + 1 1 A>G A>G +AACCCAAAGTATAGGT-1_17_39848018_C_T_+ AACCCAAAGTATAGGT-1 17 39848018 C T + 1 1 C>T C>T +AACTTCTCAGGACTTT-1_19_9123942_C_G_- AACTTCTCAGGACTTT-1 19 9123942 C G - 1 1 C>G G>C +AACCAACCAGCAATTC-1_3_152233173_C_T_+ AACCAACCAGCAATTC-1 3 152233173 C T + 1 1 C>T C>T +AACAACCCAGACCAAG-1_9_58162116_T_C_- AACAACCCAGACCAAG-1 9 58162116 T C - 1 1 T>C A>G +AACCACATCGGAGATG-1_9_95979123_T_A_+ AACCACATCGGAGATG-1 9 95979123 T A + 1 1 T>A T>A +AAGATAGCATGGGAAC-1_16_57391688_T_G_- AAGATAGCATGGGAAC-1 16 57391688 T G - 1 1 T>G A>C +AAACGAAAGGTAGTCG-1_13_54383750_C_A_+ AAACGAAAGGTAGTCG-1 13 54383750 C A + 1 1 C>A C>A +AACGGGAGTTCAATCG-1_13_37386983_C_T_+ AACGGGAGTTCAATCG-1 13 37386983 C T + 1 1 C>T C>T +AAAGTCCCAAACGGCA-1_X_35900988_C_A_+ AAAGTCCCAAACGGCA-1 X 35900988 C A + 1 1 C>A C>A +AACCTTTAGACCAGAC-1_X_136837538_G_A_+ AACCTTTAGACCAGAC-1 X 136837538 G A + 1 4 G>A G>A +AACCTGACATCATCCC-1_9_107665851_C_T_- AACCTGACATCATCCC-1 9 107665851 C T - 1 1 C>T G>A +AAATGGAAGTTTCGGT-1_2_121744726_A_T_- AAATGGAAGTTTCGGT-1 2 121744726 A T - 1 1 A>T T>A +AAAGGGCAGGTAGACC-1_5_147875522_C_T_+ AAAGGGCAGGTAGACC-1 5 147875522 C T + 1 1 C>T C>T +AAGAACAGTCGGCTAC-1_5_146261113_T_C_+ AAGAACAGTCGGCTAC-1 5 146261113 T C + 1 1 T>C T>C +AAAGTCCAGTCGGCCT-1_3_58557234_C_T_+ AAAGTCCAGTCGGCCT-1 3 58557234 C T + 1 1 C>T C>T +AAGATAGAGGCCACTC-1_17_34116986_T_C_- AAGATAGAGGCCACTC-1 17 34116986 T C - 1 1 T>C A>G +AAGACTCGTATCTCTT-1_17_70963839_T_C_+ AAGACTCGTATCTCTT-1 17 70963839 T C + 1 1 T>C T>C +AAATGGAAGCAGATAT-1_4_117948555_G_A_- AAATGGAAGCAGATAT-1 4 117948555 G A - 1 1 G>A C>T +AACTTCTTCTTCACGC-1_3_146983721_C_T_+ AACTTCTTCTTCACGC-1 3 146983721 C T + 1 1 C>T C>T +AACCAACAGCTACTGT-1_13_90924431_C_A_+ AACCAACAGCTACTGT-1 13 90924431 C A + 1 1 C>A C>A +AACCTGATCGCTCATC-1_2_174346597_G_A_+ AACCTGATCGCTCATC-1 2 174346597 G A + 1 1 G>A G>A +AAGAACACAAAGGTTA-1_6_55501243_G_A_+ AAGAACACAAAGGTTA-1 6 55501243 G A + 1 1 G>A G>A +AACAAAGCACCGGTCA-1_11_98768841_C_T_+ AACAAAGCACCGGTCA-1 11 98768841 C T + 1 1 C>T C>T +AAACGAAGTGTTTACG-1_1_153478100_G_A_- AAACGAAGTGTTTACG-1 1 153478100 G A - 1 1 G>A C>T +AACTTCTCACTAACGT-1_9_123461940_T_G_+ AACTTCTCACTAACGT-1 9 123461940 T G + 1 1 T>G T>G +AAGAACAGTAAGATAC-1_17_39848018_C_T_+ AAGAACAGTAAGATAC-1 17 39848018 C T + 1 1 C>T C>T +AAGACAAAGATGCTAA-1_16_92078994_G_A_+ AAGACAAAGATGCTAA-1 16 92078994 G A + 1 1 G>A G>A +AACAACCCATTAAAGG-1_2_113776425_G_A_- AACAACCCATTAAAGG-1 2 113776425 G A - 1 1 G>A C>T +AACCTGACAGCTGTCG-1_1_168155486_C_T_- AACCTGACAGCTGTCG-1 1 168155486 C T - 1 1 C>T G>A +AAACGCTGTAGCTTTG-1_8_109671400_T_G_- AAACGCTGTAGCTTTG-1 8 109671400 T G - 1 1 T>G A>C +AACTTCTCATGAATAG-1_5_32492754_C_A_+ AACTTCTCATGAATAG-1 5 32492754 C A + 1 1 C>A C>A +AAAGTCCGTGAGTAAT-1_17_39847426_T_C_- AAAGTCCGTGAGTAAT-1 17 39847426 T C - 1 1 T>C A>G +AAAGGTAAGCATTTGC-1_9_44636561_G_T_+ AAAGGTAAGCATTTGC-1 9 44636561 G T + 1 1 G>T G>T +AACGTCATCTATACGG-1_1_84370549_G_A_- AACGTCATCTATACGG-1 1 84370549 G A - 1 1 G>A C>T +AAACCCACAAAGACGC-1_11_68904480_A_G_+ AAACCCACAAAGACGC-1 11 68904480 A G + 1 1 A>G A>G +AAGATAGAGGGTACGT-1_9_3025567_C_T_- AAGATAGAGGGTACGT-1 9 3025567 C T - 1 1 C>T G>A +AAAGGGCCACCAGTTA-1_9_120495065_A_G_+ AAAGGGCCACCAGTTA-1 9 120495065 A G + 1 1 A>G A>G +AACGTCATCTGGCTGG-1_6_23263005_T_C_- AACGTCATCTGGCTGG-1 6 23263005 T C - 1 1 T>C A>G +AACGGGAGTTTGGCTA-1_5_124596819_T_A_+ AACGGGAGTTTGGCTA-1 5 124596819 T A + 1 1 T>A T>A +AAATGGAGTAGTGTGG-1_9_69282747_G_A_+ AAATGGAGTAGTGTGG-1 9 69282747 G A + 1 1 G>A G>A +AACCTGATCTGAGAGG-1_17_39847192_C_T_+ AACCTGATCTGAGAGG-1 17 39847192 C T + 1 1 C>T C>T +AAAGGGCCACACTTAG-1_9_40785054_A_T_+ AAAGGGCCACACTTAG-1 9 40785054 A T + 1 1 A>T A>T +AAGAACATCGACCCAG-1_17_39847607_T_A_+ AAGAACATCGACCCAG-1 17 39847607 T A + 1 1 T>A T>A +AACCAACTCAAGAATG-1_17_39848018_C_T_+ AACCAACTCAAGAATG-1 17 39848018 C T + 1 1 C>T C>T +AAGACTCAGCGATTCT-1_17_39847360_A_T_+ AAGACTCAGCGATTCT-1 17 39847360 A T + 1 1 A>T A>T +AAACCCACATATCTCT-1_5_146261106_C_G_+ AAACCCACATATCTCT-1 5 146261106 C G + 1 1 C>G C>G +AACCCAATCCCTCATG-1_2_42189627_A_T_- AACCCAATCCCTCATG-1 2 42189627 A T - 1 1 A>T T>A +AAATGGAGTTCTGACA-1_5_150497610_C_T_+ AAATGGAGTTCTGACA-1 5 150497610 C T + 1 1 C>T C>T +AACAAAGCATTGCTGA-1_17_39848088_T_G_+ AACAAAGCATTGCTGA-1 17 39848088 T G + 1 1 T>G T>G +AACCAACGTCACCCTT-1_8_69895266_A_C_- AACCAACGTCACCCTT-1 8 69895266 A C - 1 1 A>C T>G +AACCACAGTCTACAAC-1_10_81182310_G_A_+ AACCACAGTCTACAAC-1 10 81182310 G A + 1 1 G>A G>A +AACACACGTTTGTTCT-1_5_125044188_T_C_- AACACACGTTTGTTCT-1 5 125044188 T C - 1 1 T>C A>G +AACAAAGAGTGACCTT-1_X_101448499_A_G_+ AACAAAGAGTGACCTT-1 X 101448499 A G + 1 1 A>G A>G +AAAGAACCACTCCGAG-1_8_120673261_C_T_+ AAAGAACCACTCCGAG-1 8 120673261 C T + 1 1 C>T C>T +AACCCAAGTATCGATC-1_7_66089188_A_C_+ AACCCAAGTATCGATC-1 7 66089188 A C + 1 1 A>C A>C +AACCACAGTCGTGATT-1_17_39847180_G_A_- AACCACAGTCGTGATT-1 17 39847180 G A - 1 1 G>A C>T +AAGACTCGTCCACATA-1_4_150247920_T_A_+ AAGACTCGTCCACATA-1 4 150247920 T A + 1 1 T>A T>A +AACTTCTCAGGACTTT-1_17_78978605_G_T_- AACTTCTCAGGACTTT-1 17 78978605 G T - 1 1 G>T C>A +AAACGAAAGGTAGTCG-1_14_18280265_T_C_+ AAACGAAAGGTAGTCG-1 14 18280265 T C + 1 1 T>C T>C +AACCAACTCGATGGAG-1_17_57043725_A_T_- AACCAACTCGATGGAG-1 17 57043725 A T - 1 1 A>T T>A +AAAGGGCTCTGCTAGA-1_17_74391044_C_T_+ AAAGGGCTCTGCTAGA-1 17 74391044 C T + 1 1 C>T C>T +AAGACAAAGAGTTCGG-1_5_58021086_A_G_+ AAGACAAAGAGTTCGG-1 5 58021086 A G + 1 1 A>G A>G +AAAGGGCCATGTCTAG-1_5_14589925_A_G_+ AAAGGGCCATGTCTAG-1 5 14589925 A G + 1 1 A>G A>G +AACAAGAGTGGCGTAA-1_11_64083104_C_A_+ AACAAGAGTGGCGTAA-1 11 64083104 C A + 1 1 C>A C>A +AACAACCAGTAATACG-1_12_80634277_A_G_- AACAACCAGTAATACG-1 12 80634277 A G - 1 1 A>G T>C AACTTCTAGCCTAACT-1_19_16212804_C_T_+ AACTTCTAGCCTAACT-1 19 16212804 C T + 1 1 C>T C>T -AACGTCAAGCGAGGAG-1_19_7425976_A_G_- AACGTCAAGCGAGGAG-1 19 7425976 A G - 1 1 A>G T>C -AAAGGGCCACACTTAG-1_19_4549592_A_G_+ AAAGGGCCACACTTAG-1 19 4549592 A G + 1 1 A>G A>G -AACCAACTCGATGGAG-1_19_5802224_T_C_- AACCAACTCGATGGAG-1 19 5802224 T C - 1 1 T>C A>G -AACCTGATCTAGTACG-1_19_4114511_G_T_- AACCTGATCTAGTACG-1 19 4114511 G T - 1 1 G>T C>A -AAGAACAGTTGGAGGT-1_19_5664746_G_A_- AAGAACAGTTGGAGGT-1 19 5664746 G A - 1 1 G>A C>T -AACCTGACATCGTCCT-1_19_53903474_C_G_+ AACCTGACATCGTCCT-1 19 53903474 C G + 1 1 C>G C>G -AACTTCTCAGGACTTT-1_19_9123948_T_A_- AACTTCTCAGGACTTT-1 19 9123948 T A - 1 1 T>A A>T -AAAGGTACAATTGCAC-1_19_10245356_G_A_- AAAGGTACAATTGCAC-1 19 10245356 G A - 1 1 G>A C>T -AAGAACAGTAAGATAC-1_19_11774649_C_T_+ AAGAACAGTAAGATAC-1 19 11774649 C T + 1 1 C>T C>T +AAACCCATCGCGTCGA-1_17_39848018_C_T_+ AAACCCATCGCGTCGA-1 17 39848018 C T + 1 1 C>T C>T +AAAGGATGTACAACGG-1_17_70963742_A_C_+ AAAGGATGTACAACGG-1 17 70963742 A C + 1 1 A>C A>C +AAAGTGACAAATACAG-1_11_23003257_C_T_+ AAAGTGACAAATACAG-1 11 23003257 C T + 1 1 C>T C>T +AAATGGAGTAGTGTGG-1_16_57391552_C_G_- AAATGGAGTAGTGTGG-1 16 57391552 C G - 1 1 C>G G>C +AACCCAATCCCTCATG-1_2_174346367_C_T_+ AACCCAATCCCTCATG-1 2 174346367 C T + 1 1 C>T C>T +AACCACATCCTAGCTC-1_11_29999850_T_C_- AACCACATCCTAGCTC-1 11 29999850 T C - 1 1 T>C A>G +AAATGGACACAAGGTG-1_16_57391454_T_C_- AAATGGACACAAGGTG-1 16 57391454 T C - 1 2 T>C A>G +AACCACAAGGACAGCT-1_15_76668000_T_C_+ AACCACAAGGACAGCT-1 15 76668000 T C + 1 1 T>C T>C +AACTTCTAGCAGATAT-1_11_87265705_A_T_- AACTTCTAGCAGATAT-1 11 87265705 A T - 1 1 A>T T>A +AAAGTGACACCAGCTG-1_3_32748559_T_A_+ AAAGTGACACCAGCTG-1 3 32748559 T A + 1 1 T>A T>A +AACTTCTCACTAACGT-1_19_6059432_G_A_+ AACTTCTCACTAACGT-1 19 6059432 G A + 1 1 G>A G>A +AAAGTCCAGTCGGCCT-1_11_98768845_C_T_+ AAAGTCCAGTCGGCCT-1 11 98768845 C T + 1 1 C>T C>T +AAAGGGCTCCTCAGGG-1_13_44869614_A_G_+ AAAGGGCTCCTCAGGG-1 13 44869614 A G + 1 1 A>G A>G +AACGGGAAGTTGCCCG-1_17_35238391_T_C_+ AACGGGAAGTTGCCCG-1 17 35238391 T C + 1 1 T>C T>C +AAAGGGCGTACGATGG-1_10_80172473_C_T_+ AAAGGGCGTACGATGG-1 10 80172473 C T + 1 1 C>T C>T +AACCTTTCACACCTGG-1_4_138457009_T_A_+ AACCTTTCACACCTGG-1 4 138457009 T A + 1 1 T>A T>A +AAAGAACCAACTTCTT-1_7_89708878_G_A_+ AAAGAACCAACTTCTT-1 7 89708878 G A + 1 1 G>A G>A +AAAGTCCCAAACGGCA-1_10_94417414_C_G_+ AAAGTCCCAAACGGCA-1 10 94417414 C G + 1 1 C>G C>G +AACGTCATCTTAGGAC-1_5_66080207_T_C_- AACGTCATCTTAGGAC-1 5 66080207 T C - 1 1 T>C A>G +AAACCCACACCGTGGT-1_19_9984948_C_T_+ AAACCCACACCGTGGT-1 19 9984948 C T + 1 2 C>T C>T +AAATGGATCCCTTGTG-1_13_42866422_C_A_+ AAATGGATCCCTTGTG-1 13 42866422 C A + 1 1 C>A C>A +AAGACTCTCTACCACC-1_1_162704824_T_G_- AAGACTCTCTACCACC-1 1 162704824 T G - 1 1 T>G A>C +AAAGTGACAAATACAG-1_15_95219612_T_C_- AAAGTGACAAATACAG-1 15 95219612 T C - 1 1 T>C A>G +AACTTCTCACTAACGT-1_2_136002602_G_A_+ AACTTCTCACTAACGT-1 2 136002602 G A + 1 1 G>A G>A +AACCCAAAGCGATCGA-1_19_32672827_A_G_- AACCCAAAGCGATCGA-1 19 32672827 A G - 1 1 A>G T>C +AAGATAGAGGAATCGC-1_6_55681030_T_A_- AAGATAGAGGAATCGC-1 6 55681030 T A - 1 1 T>A A>T +AAACGAACAGCTTCGG-1_14_99254418_A_G_+ AAACGAACAGCTTCGG-1 14 99254418 A G + 1 1 A>G A>G +AACCATGGTCTACAAC-1_15_35935325_G_T_- AACCATGGTCTACAAC-1 15 35935325 G T - 1 1 G>T C>A +AAACGAAGTTCATCTT-1_4_46662889_G_A_- AAACGAAGTTCATCTT-1 4 46662889 G A - 1 1 G>A C>T +AAAGTGACACCAGCTG-1_3_32748556_G_C_+ AAAGTGACACCAGCTG-1 3 32748556 G C + 1 1 G>C G>C +AACAACCAGACATATG-1_2_5379332_A_T_- AACAACCAGACATATG-1 2 5379332 A T - 1 1 A>T T>A +AAGACTCCAACACAGG-1_19_29715491_A_T_- AAGACTCCAACACAGG-1 19 29715491 A T - 1 1 A>T T>A +AAGACTCGTATCTCTT-1_17_39848018_C_T_+ AAGACTCGTATCTCTT-1 17 39848018 C T + 1 1 C>T C>T +AACCTGATCTAGTACG-1_4_105232552_A_T_+ AACCTGATCTAGTACG-1 4 105232552 A T + 1 1 A>T A>T +AAGAACATCTCCGAAA-1_11_77470574_G_T_- AAGAACATCTCCGAAA-1 11 77470574 G T - 1 1 G>T C>A +AACCACATCCGTACGG-1_12_75527354_T_C_- AACCACATCCGTACGG-1 12 75527354 T C - 1 1 T>C A>G +AACGTCAAGCTGAAGC-1_5_146261113_T_C_+ AACGTCAAGCTGAAGC-1 5 146261113 T C + 1 1 T>C T>C +AAGACAAGTACTGACT-1_8_111622689_G_A_+ AAGACAAGTACTGACT-1 8 111622689 G A + 1 1 G>A G>A +AAACGCTGTGAGGATC-1_17_39847458_A_G_+ AAACGCTGTGAGGATC-1 17 39847458 A G + 1 1 A>G A>G +AAAGGATAGCGTTGTT-1_5_146261004_G_C_+ AAAGGATAGCGTTGTT-1 5 146261004 G C + 1 1 G>C G>C +AACAAAGCACGGCACT-1_X_136838028_A_G_+ AACAAAGCACGGCACT-1 X 136838028 A G + 1 1 A>G A>G +AACCTGAGTCTGTAGT-1_16_23334601_G_T_+ AACCTGAGTCTGTAGT-1 16 23334601 G T + 1 1 G>T G>T +AAAGGTATCTTTGCGC-1_5_104079367_G_A_- AAAGGTATCTTTGCGC-1 5 104079367 G A - 1 1 G>A C>T +AAAGTCCGTAGGTTTC-1_11_114672292_C_T_+ AAAGTCCGTAGGTTTC-1 11 114672292 C T + 1 1 C>T C>T +AAAGAACAGTCGCGAA-1_8_126964056_T_C_- AAAGAACAGTCGCGAA-1 8 126964056 T C - 1 1 T>C A>G +AAGACTCTCACAAGAA-1_5_146261076_T_C_+ AAGACTCTCACAAGAA-1 5 146261076 T C + 1 1 T>C T>C +AAACGCTCATCAACCA-1_2_24827319_A_T_- AAACGCTCATCAACCA-1 2 24827319 A T - 1 1 A>T T>A +AACCACAAGCTTTGTG-1_11_32059082_C_T_+ AACCACAAGCTTTGTG-1 11 32059082 C T + 1 1 C>T C>T +AAAGTCCCATGTGGCC-1_8_40991557_T_A_- AAAGTCCCATGTGGCC-1 8 40991557 T A - 1 1 T>A A>T +AAAGAACTCCATCTAT-1_16_57391454_T_C_- AAAGAACTCCATCTAT-1 16 57391454 T C - 1 1 T>C A>G +AACTTCTTCTTCACGC-1_14_75848154_C_T_+ AACTTCTTCTTCACGC-1 14 75848154 C T + 1 1 C>T C>T +AAGAACATCTCCGAAA-1_1_159273011_T_C_+ AAGAACATCTCCGAAA-1 1 159273011 T C + 1 1 T>C T>C +AACCACACAGCTGAGA-1_17_39847458_A_G_- AACCACACAGCTGAGA-1 17 39847458 A G - 1 1 A>G T>C +AAATGGACAAGCGCAA-1_11_94075505_T_A_+ AAATGGACAAGCGCAA-1 11 94075505 T A + 1 1 T>A T>A +AAACCCATCGGATAAA-1_2_31295301_G_A_+ AAACCCATCGGATAAA-1 2 31295301 G A + 1 1 G>A G>A +AACAAAGGTCTGCATA-1_11_62553024_G_T_+ AACAAAGGTCTGCATA-1 11 62553024 G T + 1 1 G>T G>T +AAACGAAGTGTTTACG-1_15_97790691_T_A_+ AAACGAAGTGTTTACG-1 15 97790691 T A + 1 1 T>A T>A +AAACCCATCTTAAGGC-1_5_146261004_G_C_+ AAACCCATCTTAAGGC-1 5 146261004 G C + 1 1 G>C G>C +AACACACGTGTTGCCG-1_8_22637010_C_A_- AACACACGTGTTGCCG-1 8 22637010 C A - 1 1 C>A G>T +AAACCCAAGATTGCGG-1_10_90973048_C_T_+ AAACCCAAGATTGCGG-1 10 90973048 C T + 1 1 C>T C>T +AACAACCCATTAAAGG-1_2_113776447_G_A_- AACAACCCATTAAAGG-1 2 113776447 G A - 1 1 G>A C>T +AACTTCTCATGAATAG-1_13_100736273_G_A_- AACTTCTCATGAATAG-1 13 100736273 G A - 1 1 G>A C>T +AAAGAACAGAATACAC-1_17_24721256_C_T_+ AAAGAACAGAATACAC-1 17 24721256 C T + 1 1 C>T C>T +AACCAACGTTTCGTGA-1_MT_9158_A_G_+ AACCAACGTTTCGTGA-1 MT 9158 A G + 1 1 A>G A>G +AACAAGATCCCAAGTA-1_1_86350137_A_G_- AACAAGATCCCAAGTA-1 1 86350137 A G - 1 1 A>G T>C +AAGACTCGTGGCTAGA-1_17_26972373_C_T_+ AAGACTCGTGGCTAGA-1 17 26972373 C T + 1 1 C>T C>T +AACCACATCAAAGGTA-1_8_26026572_G_A_- AACCACATCAAAGGTA-1 8 26026572 G A - 1 1 G>A C>T +AAATGGACAAGTGGAC-1_9_3020905_C_T_+ AAATGGACAAGTGGAC-1 9 3020905 C T + 1 1 C>T C>T +AACGGGAGTTCAATCG-1_8_46807729_A_G_+ AACGGGAGTTCAATCG-1 8 46807729 A G + 1 1 A>G A>G +AAGAACATCATAGGCT-1_11_57329974_C_T_+ AAGAACATCATAGGCT-1 11 57329974 C T + 1 1 C>T C>T +AAATGGATCGCCCAGA-1_8_83996281_C_T_+ AAATGGATCGCCCAGA-1 8 83996281 C T + 1 1 C>T C>T +AAGATAGCATGGGAAC-1_16_57391685_G_A_- AAGATAGCATGGGAAC-1 16 57391685 G A - 1 1 G>A C>T +AACGGGAAGCAGCCCT-1_5_146261113_T_C_+ AACGGGAAGCAGCCCT-1 5 146261113 T C + 1 1 T>C T>C +AAACGAAGTCGCGTTG-1_17_39847403_T_G_- AAACGAAGTCGCGTTG-1 17 39847403 T G - 1 2 T>G A>C +AACACACAGGATCACG-1_1_137939415_A_T_- AACACACAGGATCACG-1 1 137939415 A T - 1 1 A>T T>A +AAAGGATGTAAGATTG-1_15_58939380_A_G_+ AAAGGATGTAAGATTG-1 15 58939380 A G + 1 1 A>G A>G +AACCACAAGCTTTGTG-1_5_25375878_G_A_- AACCACAAGCTTTGTG-1 5 25375878 G A - 1 1 G>A C>T +AAAGTCCTCGAACACT-1_15_80078729_G_A_- AAAGTCCTCGAACACT-1 15 80078729 G A - 1 1 G>A C>T +AACGAAAAGACCTGGA-1_11_52246537_T_C_+ AACGAAAAGACCTGGA-1 11 52246537 T C + 1 1 T>C T>C +AACAACCAGTAATACG-1_1_182816496_C_G_+ AACAACCAGTAATACG-1 1 182816496 C G + 1 1 C>G C>G +AACAGGGTCTTCCACG-1_10_102389976_A_G_+ AACAGGGTCTTCCACG-1 10 102389976 A G + 1 1 A>G A>G +AAAGTCCAGTCGGCCT-1_4_156009990_C_T_+ AAAGTCCAGTCGGCCT-1 4 156009990 C T + 1 1 C>T C>T +AAAGGTAAGGACAGTC-1_5_76209001_G_A_+ AAAGGTAAGGACAGTC-1 5 76209001 G A + 1 1 G>A G>A +AACCTTTAGACCAGAC-1_9_108565228_G_T_+ AACCTTTAGACCAGAC-1 9 108565228 G T + 1 1 G>T G>T +AAAGAACCAACTTCTT-1_17_39848018_C_T_+ AAAGAACCAACTTCTT-1 17 39848018 C T + 1 1 C>T C>T +AAAGGTATCCCGTAAA-1_6_24613976_G_A_- AAAGGTATCCCGTAAA-1 6 24613976 G A - 1 1 G>A C>T +AACAAAGCACGGCACT-1_4_43032498_T_G_- AACAAAGCACGGCACT-1 4 43032498 T G - 1 1 T>G A>C +AAAGGTAGTATGTGTC-1_11_109573507_T_G_- AAAGGTAGTATGTGTC-1 11 109573507 T G - 1 1 T>G A>C +AAGAACAGTAGGACTG-1_1_34819619_C_G_- AAGAACAGTAGGACTG-1 1 34819619 C G - 1 1 C>G G>C +AAAGAACAGTCCCGGT-1_2_167298646_G_A_- AAAGAACAGTCCCGGT-1 2 167298646 G A - 1 1 G>A C>T +AACGGGAGTTTGGCTA-1_17_39848018_C_T_+ AACGGGAGTTTGGCTA-1 17 39848018 C T + 1 1 C>T C>T +AAAGTCCTCCGATGCG-1_10_9828371_C_T_- AAAGTCCTCCGATGCG-1 10 9828371 C T - 1 1 C>T G>A +AAACGCTGTTTGACAC-1_9_3024600_G_T_- AAACGCTGTTTGACAC-1 9 3024600 G T - 1 1 G>T C>A +AAACGAAAGTCGCGAA-1_19_5802230_A_T_- AAACGAAAGTCGCGAA-1 19 5802230 A T - 1 2 A>T T>A +AACAACCCATTCGGGC-1_9_3037757_A_T_- AACAACCCATTCGGGC-1 9 3037757 A T - 1 1 A>T T>A +AACAAAGGTAGGGTAC-1_7_19696697_C_T_- AACAAAGGTAGGGTAC-1 7 19696697 C T - 1 1 C>T G>A +AAGACTCGTCCAGAAG-1_5_122788322_T_A_- AAGACTCGTCCAGAAG-1 5 122788322 T A - 1 1 T>A A>T +AAAGGTATCCCGTAAA-1_X_99466109_G_T_- AAAGGTATCCCGTAAA-1 X 99466109 G T - 1 1 G>T C>A +AACAGGGTCGACGCTG-1_11_5704247_A_C_- AACAGGGTCGACGCTG-1 11 5704247 A C - 1 1 A>C T>G +AACCTGACAATAGTAG-1_10_60666619_T_A_- AACCTGACAATAGTAG-1 10 60666619 T A - 1 1 T>A A>T +AACGTCACATCAGTCA-1_17_39847403_T_G_- AACGTCACATCAGTCA-1 17 39847403 T G - 1 1 T>G A>C +AACCAACCAGTCTTCC-1_9_3028854_C_T_- AACCAACCAGTCTTCC-1 9 3028854 C T - 1 1 C>T G>A +AACACACAGTGCACAG-1_9_70554624_T_G_+ AACACACAGTGCACAG-1 9 70554624 T G + 1 1 T>G T>G +AACCATGGTGAGTTTC-1_18_76305655_A_C_+ AACCATGGTGAGTTTC-1 18 76305655 A C + 1 1 A>C A>C +AAGACTCCACATCATG-1_2_155819950_A_G_- AAGACTCCACATCATG-1 2 155819950 A G - 1 1 A>G T>C +AAAGGGCAGACTACCT-1_16_57391677_C_G_- AAAGGGCAGACTACCT-1 16 57391677 C G - 1 1 C>G G>C +AAGACTCTCCCATAAG-1_16_30955762_G_A_- AAGACTCTCCCATAAG-1 16 30955762 G A - 1 1 G>A C>T +AAGATAGGTACGCGTC-1_7_28778440_G_A_+ AAGATAGGTACGCGTC-1 7 28778440 G A + 1 1 G>A G>A +AAATGGAAGCAGATAT-1_13_52835290_G_T_- AAATGGAAGCAGATAT-1 13 52835290 G T - 1 1 G>T C>A +AAAGTCCAGTCGGCCT-1_4_138458020_A_G_+ AAAGTCCAGTCGGCCT-1 4 138458020 A G + 1 1 A>G A>G +AACCACATCCTAGCTC-1_16_57391454_T_C_- AACCACATCCTAGCTC-1 16 57391454 T C - 1 1 T>C A>G +AAGACAAAGAGTTCGG-1_16_43619139_C_A_+ AAGACAAAGAGTTCGG-1 16 43619139 C A + 1 1 C>A C>A +AACAACCGTACTCAAC-1_17_70740117_G_A_+ AACAACCGTACTCAAC-1 17 70740117 G A + 1 1 G>A G>A +AAGAACAAGTCTCTGA-1_9_3000578_C_A_- AAGAACAAGTCTCTGA-1 9 3000578 C A - 1 1 C>A G>T +AAAGGGCTCCTCAGGG-1_13_22015975_A_G_+ AAAGGGCTCCTCAGGG-1 13 22015975 A G + 1 1 A>G A>G +AAAGAACAGTCGCGAA-1_2_98666902_A_G_- AAAGAACAGTCGCGAA-1 2 98666902 A G - 1 1 A>G T>C +AACCATGTCATCGCTC-1_10_116425458_G_T_- AACCATGTCATCGCTC-1 10 116425458 G T - 1 1 G>T C>A +AAACCCATCCACACAA-1_X_136837259_T_A_+ AAACCCATCCACACAA-1 X 136837259 T A + 1 1 T>A T>A +AAAGTCCTCCCAGCGA-1_9_3004632_T_G_- AAAGTCCTCCCAGCGA-1 9 3004632 T G - 1 1 T>G A>C +AAACGCTCATCAACCA-1_5_73020518_G_A_- AAACGCTCATCAACCA-1 5 73020518 G A - 1 1 G>A C>T +AAGAACAGTAAGATAC-1_2_20408278_A_T_+ AAGAACAGTAAGATAC-1 2 20408278 A T + 1 1 A>T A>T +AACCAACGTCCCTGTT-1_5_30866037_A_T_+ AACCAACGTCCCTGTT-1 5 30866037 A T + 1 1 A>T A>T +AAGACAAAGGGCAGGA-1_2_98666945_G_A_- AAGACAAAGGGCAGGA-1 2 98666945 G A - 1 1 G>A C>T +AAGACTCTCATTGGTG-1_9_3035804_A_G_- AAGACTCTCATTGGTG-1 9 3035804 A G - 1 1 A>G T>C +AACCTGAAGTCCCAGC-1_12_72211843_G_A_- AACCTGAAGTCCCAGC-1 12 72211843 G A - 1 1 G>A C>T +AAACCCACATTCACAG-1_17_39847426_T_C_+ AAACCCACATTCACAG-1 17 39847426 T C + 1 1 T>C T>C +AACGAAAAGCGTCGAA-1_6_145216856_G_A_- AACGAAAAGCGTCGAA-1 6 145216856 G A - 1 1 G>A C>T +AAACGCTAGGTAGGCT-1_7_130510875_C_T_- AAACGCTAGGTAGGCT-1 7 130510875 C T - 1 1 C>T G>A +AACAAAGTCTACTCAT-1_9_3000384_G_T_- AACAAAGTCTACTCAT-1 9 3000384 G T - 1 1 G>T C>A +AAAGTCCAGCAAGGAA-1_17_39847607_T_C_- AAAGTCCAGCAAGGAA-1 17 39847607 T C - 1 1 T>C A>G +AACTTCTAGCTGTGCC-1_3_5751280_A_C_+ AACTTCTAGCTGTGCC-1 3 5751280 A C + 1 1 A>C A>C +AAATGGACACCATATG-1_17_39848018_C_T_+ AAATGGACACCATATG-1 17 39848018 C T + 1 1 C>T C>T +AACCAACGTTCTAAGC-1_1_23847767_T_C_+ AACCAACGTTCTAAGC-1 1 23847767 T C + 1 1 T>C T>C +AACAAAGGTCGCTGCA-1_13_45817435_A_C_- AACAAAGGTCGCTGCA-1 13 45817435 A C - 1 1 A>C T>G +AAATGGAAGCAGATAT-1_17_24721663_C_T_+ AAATGGAAGCAGATAT-1 17 24721663 C T + 1 1 C>T C>T +AACAAGAGTAGAATGT-1_1_64533659_G_T_+ AACAAGAGTAGAATGT-1 1 64533659 G T + 1 1 G>T G>T +AAAGGATCATTCATCT-1_7_44900421_G_C_- AAAGGATCATTCATCT-1 7 44900421 G C - 1 1 G>C C>G +AACCATGTCCTCGCAT-1_6_12315111_G_A_- AACCATGTCCTCGCAT-1 6 12315111 G A - 1 1 G>A C>T +AACCATGGTGAGTTTC-1_7_124136535_G_C_+ AACCATGGTGAGTTTC-1 7 124136535 G C + 1 1 G>C G>C +AAACGCTCAGTAGGAC-1_X_37082602_G_A_- AAACGCTCAGTAGGAC-1 X 37082602 G A - 1 1 G>A C>T +AACCTGACACCAACAT-1_12_78350929_T_C_+ AACCTGACACCAACAT-1 12 78350929 T C + 1 1 T>C T>C +AAATGGACACAAGGTG-1_16_57391454_T_C_+ AAATGGACACAAGGTG-1 16 57391454 T C + 1 2 T>C T>C +AACCAACGTTTCGTGA-1_6_30748770_T_G_- AACCAACGTTTCGTGA-1 6 30748770 T G - 1 1 T>G A>C +AAAGGTAAGTGGTTAA-1_3_96626127_C_T_+ AAAGGTAAGTGGTTAA-1 3 96626127 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_3_88703612_C_T_+ AACCACAAGCTTTGTG-1 3 88703612 C T + 1 1 C>T C>T +AACCCAATCCTCTAGC-1_19_5802659_T_G_- AACCCAATCCTCTAGC-1 19 5802659 T G - 1 2 T>G A>C +AACCATGAGCATCGAG-1_8_64718451_A_T_- AACCATGAGCATCGAG-1 8 64718451 A T - 1 1 A>T T>A +AACGGGAAGTTGCCCG-1_9_53614783_G_A_- AACGGGAAGTTGCCCG-1 9 53614783 G A - 1 1 G>A C>T +AACCAACGTCCCTGTT-1_4_129111628_G_A_- AACCAACGTCCCTGTT-1 4 129111628 G A - 1 1 G>A C>T +AACAACCGTTTCACAG-1_3_130729297_G_A_- AACAACCGTTTCACAG-1 3 130729297 G A - 1 1 G>A C>T +AACGTCACACAATGCT-1_14_21033674_T_A_+ AACGTCACACAATGCT-1 14 21033674 T A + 1 1 T>A T>A +AACAAGAGTTCTCAGA-1_11_86694704_A_G_- AACAAGAGTTCTCAGA-1 11 86694704 A G - 1 1 A>G T>C +AACGAAACATCTCAAG-1_19_31121431_C_A_- AACGAAACATCTCAAG-1 19 31121431 C A - 1 1 C>A G>T +AACACACTCCTTCACG-1_1_152383995_T_C_- AACACACTCCTTCACG-1 1 152383995 T C - 1 1 T>C A>G +AAAGGATCACGACAGA-1_4_123374753_C_T_- AAAGGATCACGACAGA-1 4 123374753 C T - 1 1 C>T G>A +AACCTGAAGAGGCGTT-1_15_54753506_C_T_+ AACCTGAAGAGGCGTT-1 15 54753506 C T + 1 1 C>T C>T +AACAACCGTATGTCTG-1_6_91522467_C_T_+ AACAACCGTATGTCTG-1 6 91522467 C T + 1 1 C>T C>T +AACTTCTCACTAACGT-1_10_108262581_G_A_+ AACTTCTCACTAACGT-1 10 108262581 G A + 1 1 G>A G>A +AAACGCTCAGTAGGAC-1_X_10596338_C_T_+ AAACGCTCAGTAGGAC-1 X 10596338 C T + 1 1 C>T C>T +AACCAACGTAGTGTGG-1_X_100623107_G_A_- AACCAACGTAGTGTGG-1 X 100623107 G A - 1 1 G>A C>T +AAGATAGGTCATCAGT-1_8_104429451_A_G_- AAGATAGGTCATCAGT-1 8 104429451 A G - 1 1 A>G T>C +AAGACAAGTACTGACT-1_2_7303494_G_A_- AAGACAAGTACTGACT-1 2 7303494 G A - 1 1 G>A C>T +AAATGGATCTGCGGCA-1_8_85260571_G_A_- AAATGGATCTGCGGCA-1 8 85260571 G A - 1 1 G>A C>T +AAAGGGCAGGCATGCA-1_9_28996226_G_A_- AAAGGGCAGGCATGCA-1 9 28996226 G A - 1 1 G>A C>T +AAAGGTAGTATGTGTC-1_13_41276543_A_T_+ AAAGGTAGTATGTGTC-1 13 41276543 A T + 1 1 A>T A>T +AAGAACATCTCCGAAA-1_18_77801728_C_A_+ AAGAACATCTCCGAAA-1 18 77801728 C A + 1 1 C>A C>A +AACCTTTTCCTAGCGG-1_16_98010734_A_T_+ AACCTTTTCCTAGCGG-1 16 98010734 A T + 1 1 A>T A>T +AAACGCTCAGTAGGAC-1_10_123024917_C_T_- AAACGCTCAGTAGGAC-1 10 123024917 C T - 1 1 C>T G>A +AACCAACGTAGGTAGC-1_15_78399594_G_T_- AACCAACGTAGGTAGC-1 15 78399594 G T - 1 1 G>T C>A +AAACGAACAACCGACC-1_7_16915463_G_T_- AAACGAACAACCGACC-1 7 16915463 G T - 1 1 G>T C>A +AACGTCACATAGATGA-1_3_55850518_T_C_- AACGTCACATAGATGA-1 3 55850518 T C - 1 1 T>C A>G +AACCTGATCTAGTACG-1_10_59949786_A_G_- AACCTGATCTAGTACG-1 10 59949786 A G - 1 1 A>G T>C +AACCAACTCGATGGAG-1_10_128548365_C_T_- AACCAACTCGATGGAG-1 10 128548365 C T - 1 1 C>T G>A +AACGGGAGTTTGGCTA-1_MT_8445_A_G_+ AACGGGAGTTTGGCTA-1 MT 8445 A G + 1 1 A>G A>G +AACGTCATCTGGCTGG-1_13_73320321_C_A_- AACGTCATCTGGCTGG-1 13 73320321 C A - 1 1 C>A G>T +AACCATGGTCATACCA-1_17_6084547_C_T_+ AACCATGGTCATACCA-1 17 6084547 C T + 1 1 C>T C>T +AACAACCGTATGTCTG-1_9_111278834_A_C_+ AACAACCGTATGTCTG-1 9 111278834 A C + 1 1 A>C A>C +AACAAAGAGCCGATTT-1_8_45816764_C_T_+ AACAAAGAGCCGATTT-1 8 45816764 C T + 1 1 C>T C>T +AAGACTCTCATTGGTG-1_9_3035769_G_T_- AAGACTCTCATTGGTG-1 9 3035769 G T - 1 1 G>T C>A +AAGACTCGTCCACATA-1_16_57391680_C_T_- AAGACTCGTCCACATA-1 16 57391680 C T - 1 1 C>T G>A +AACCAACTCGGAAGGT-1_11_61518631_C_G_- AACCAACTCGGAAGGT-1 11 61518631 C G - 1 1 C>G G>C +AACCTGATCGCTCATC-1_17_90405362_C_A_- AACCTGATCGCTCATC-1 17 90405362 C A - 1 1 C>A G>T +AACCTTTTCCTAGCGG-1_16_57391679_G_T_- AACCTTTTCCTAGCGG-1 16 57391679 G T - 1 1 G>T C>A +AACAAAGGTAGGGTAC-1_12_8938548_C_T_+ AACAAAGGTAGGGTAC-1 12 8938548 C T + 1 1 C>T C>T +AAAGAACAGTCGCGAA-1_2_98666932_C_T_- AAAGAACAGTCGCGAA-1 2 98666932 C T - 1 1 C>T G>A +AACCATGAGAGGGTCT-1_16_52416441_A_T_- AACCATGAGAGGGTCT-1 16 52416441 A T - 1 1 A>T T>A +AAAGGGCCACACTTAG-1_9_40785064_A_C_+ AAAGGGCCACACTTAG-1 9 40785064 A C + 1 1 A>C A>C +AACCAACAGTCTGCGC-1_3_40962176_A_T_+ AACCAACAGTCTGCGC-1 3 40962176 A T + 1 1 A>T A>T +AACCATGAGTTCCGTA-1_2_127284567_T_C_+ AACCATGAGTTCCGTA-1 2 127284567 T C + 1 1 T>C T>C +AACCTGATCGTGCTCT-1_17_39848018_C_T_+ AACCTGATCGTGCTCT-1 17 39848018 C T + 1 1 C>T C>T +AAATGGAAGTTCAACC-1_2_5379370_T_G_- AAATGGAAGTTCAACC-1 2 5379370 T G - 1 1 T>G A>C +AAAGGTACAGACACCC-1_9_66382753_T_A_+ AAAGGTACAGACACCC-1 9 66382753 T A + 1 1 T>A T>A +AAACGAAAGTCGCGAA-1_8_83941885_A_C_+ AAACGAAAGTCGCGAA-1 8 83941885 A C + 1 1 A>C A>C +AAACCCACACCGTGGT-1_8_95452892_G_A_- AAACCCACACCGTGGT-1 8 95452892 G A - 1 1 G>A C>T +AACCATGTCCAATCTT-1_5_62602643_A_G_- AACCATGTCCAATCTT-1 5 62602643 A G - 1 1 A>G T>C +AAGAACAGTTCGGTTA-1_6_148180045_C_T_- AAGAACAGTTCGGTTA-1 6 148180045 C T - 1 1 C>T G>A +AACAAAGTCCCGTGTT-1_2_156389934_G_A_- AACAAAGTCCCGTGTT-1 2 156389934 G A - 1 1 G>A C>T +AAAGGATAGATGAAGG-1_2_5293727_A_T_- AAAGGATAGATGAAGG-1 2 5293727 A T - 1 1 A>T T>A +AACAACCGTATGTCTG-1_14_18811884_T_C_- AACAACCGTATGTCTG-1 14 18811884 T C - 1 1 T>C A>G +AACGGGAAGGATAATC-1_16_4938188_C_T_+ AACGGGAAGGATAATC-1 16 4938188 C T + 1 1 C>T C>T +AAAGGGCCACTAGGTT-1_8_47193966_G_A_- AAAGGGCCACTAGGTT-1 8 47193966 G A - 1 1 G>A C>T +AAACGCTGTCAACACT-1_17_39847266_G_A_+ AAACGCTGTCAACACT-1 17 39847266 G A + 1 2 G>A G>A +AACAACCGTATGTCTG-1_7_61753501_A_G_- AACAACCGTATGTCTG-1 7 61753501 A G - 1 1 A>G T>C +AAGACAATCCGAGAAG-1_6_113389559_C_T_+ AAGACAATCCGAGAAG-1 6 113389559 C T + 1 1 C>T C>T +AACCTTTAGTAGGAAG-1_9_123461940_T_G_+ AACCTTTAGTAGGAAG-1 9 123461940 T G + 1 1 T>G T>G +AAGAACACAAAGGTTA-1_9_70554621_A_C_+ AAGAACACAAAGGTTA-1 9 70554621 A C + 1 1 A>C A>C +AAACGAAAGGTAGTCG-1_Y_1048945_A_G_+ AAACGAAAGGTAGTCG-1 Y 1048945 A G + 1 1 A>G A>G +AACTTCTTCTTAATCC-1_10_108642353_A_C_- AACTTCTTCTTAATCC-1 10 108642353 A C - 1 1 A>C T>G +AACGGGACATATGCGT-1_17_39847403_T_G_+ AACGGGACATATGCGT-1 17 39847403 T G + 1 1 T>G T>G +AACCAACTCGATGGAG-1_6_36785911_T_C_- AACCAACTCGATGGAG-1 6 36785911 T C - 1 1 T>C A>G +AACCTGATCTAGTACG-1_9_64178291_T_C_+ AACCTGATCTAGTACG-1 9 64178291 T C + 1 1 T>C T>C +AACCATGCAGTTCACA-1_X_7653054_G_A_+ AACCATGCAGTTCACA-1 X 7653054 G A + 1 1 G>A G>A +AACGGGAGTCAGGCAA-1_X_105968760_T_C_- AACGGGAGTCAGGCAA-1 X 105968760 T C - 1 1 T>C A>G +AAACGAAGTGCTCTCT-1_X_167207290_C_A_- AAACGAAGTGCTCTCT-1 X 167207290 C A - 1 1 C>A G>T +AAGACAAGTCCACATA-1_16_94460075_T_A_+ AAGACAAGTCCACATA-1 16 94460075 T A + 1 1 T>A T>A +AAACCCACATTCTTCA-1_12_52518841_T_C_+ AAACCCACATTCTTCA-1 12 52518841 T C + 1 1 T>C T>C +AACCATGGTAGGTTTC-1_16_57391454_T_C_- AACCATGGTAGGTTTC-1 16 57391454 T C - 1 1 T>C A>G +AACCACAAGTGATAGT-1_12_8497666_A_T_- AACCACAAGTGATAGT-1 12 8497666 A T - 1 1 A>T T>A +AACAACCCATTAAAGG-1_2_113776445_G_A_- AACAACCCATTAAAGG-1 2 113776445 G A - 1 1 G>A C>T +AAAGGATAGACTCAAA-1_16_96525617_C_T_+ AAAGGATAGACTCAAA-1 16 96525617 C T + 1 1 C>T C>T +AACTTCTAGTGATGGC-1_11_49886089_A_C_+ AACTTCTAGTGATGGC-1 11 49886089 A C + 1 1 A>C A>C +AAGATAGGTCATCAGT-1_19_5801773_C_T_- AAGATAGGTCATCAGT-1 19 5801773 C T - 1 1 C>T G>A +AAAGGATTCTAGGCAT-1_5_146261271_T_G_+ AAAGGATTCTAGGCAT-1 5 146261271 T G + 1 1 T>G T>G +AACAGGGGTATGTCTG-1_16_57391496_A_T_- AACAGGGGTATGTCTG-1 16 57391496 A T - 1 1 A>T T>A +AAGACAAAGGCCCACT-1_16_57391679_G_T_- AAGACAAAGGCCCACT-1 16 57391679 G T - 1 1 G>T C>A +AACCATGGTCGGAACA-1_17_39847103_G_A_+ AACCATGGTCGGAACA-1 17 39847103 G A + 1 1 G>A G>A +AACTTCTTCGCGATCG-1_5_122453687_G_A_- AACTTCTTCGCGATCG-1 5 122453687 G A - 1 1 G>A C>T +AACAACCAGTAATACG-1_16_18152288_C_A_+ AACAACCAGTAATACG-1 16 18152288 C A + 1 1 C>A C>A +AACAACCGTTGCAACT-1_10_3946265_A_G_+ AACAACCGTTGCAACT-1 10 3946265 A G + 1 1 A>G A>G +AAGACTCCAACACAGG-1_11_84855734_T_C_- AAGACTCCAACACAGG-1 11 84855734 T C - 1 1 T>C A>G +AACCTTTTCTTTCGAT-1_9_123461940_T_G_+ AACCTTTTCTTTCGAT-1 9 123461940 T G + 1 1 T>G T>G +AACACACGTTTGTTCT-1_11_118662952_G_A_- AACACACGTTTGTTCT-1 11 118662952 G A - 1 1 G>A C>T +AAACCCACAAAGACGC-1_17_29100524_C_A_+ AAACCCACAAAGACGC-1 17 29100524 C A + 1 1 C>A C>A +AAACCCACAGCAGTCC-1_2_148871993_G_T_- AAACCCACAGCAGTCC-1 2 148871993 G T - 1 1 G>T C>A +AAACCCACAGCAGTCC-1_2_117163522_A_T_+ AAACCCACAGCAGTCC-1 2 117163522 A T + 1 1 A>T A>T +AACCCAAGTCTGTCAA-1_1_85908515_C_T_+ AACCCAAGTCTGTCAA-1 1 85908515 C T + 1 1 C>T C>T +AACAAAGAGCCATTTG-1_17_39847426_T_C_- AACAAAGAGCCATTTG-1 17 39847426 T C - 1 1 T>C A>G +AACCTGATCTTCGTGC-1_3_95631645_T_A_+ AACCTGATCTTCGTGC-1 3 95631645 T A + 1 1 T>A T>A +AACCATGAGACGAAGA-1_2_13582711_C_T_+ AACCATGAGACGAAGA-1 2 13582711 C T + 1 1 C>T C>T +AAAGTCCCATGTGGCC-1_X_37082658_G_A_- AAAGTCCCATGTGGCC-1 X 37082658 G A - 1 1 G>A C>T +AACTTCTGTGCATGTT-1_16_57391679_G_T_- AACTTCTGTGCATGTT-1 16 57391679 G T - 1 1 G>T C>A +AAAGGGCCACCAGTTA-1_7_102053837_T_C_- AAAGGGCCACCAGTTA-1 7 102053837 T C - 1 1 T>C A>G +AACCCAAAGAATTGTG-1_8_80878143_T_C_- AACCCAAAGAATTGTG-1 8 80878143 T C - 1 1 T>C A>G +AACAACCCAGACCAAG-1_9_58162106_A_T_- AACAACCCAGACCAAG-1 9 58162106 A T - 1 1 A>T T>A +AAACCCATCGTACACA-1_1_85793688_C_G_+ AAACCCATCGTACACA-1 1 85793688 C G + 1 1 C>G C>G +AACAAAGAGGTGCGAT-1_5_112419336_A_T_- AACAAAGAGGTGCGAT-1 5 112419336 A T - 1 1 A>T T>A +AACAACCGTTTCACAG-1_7_46855543_C_T_+ AACAACCGTTTCACAG-1 7 46855543 C T + 1 1 C>T C>T +AAAGAACTCAATCAGC-1_7_39553300_C_T_+ AAAGAACTCAATCAGC-1 7 39553300 C T + 1 1 C>T C>T +AACCACATCGTCAGAT-1_5_146261080_C_A_+ AACCACATCGTCAGAT-1 5 146261080 C A + 1 1 C>A C>A +AAACCCAGTCAAATCC-1_19_5802634_C_A_- AAACCCAGTCAAATCC-1 19 5802634 C A - 1 1 C>A G>T +AACCACAAGCTTTGTG-1_6_65095532_A_G_+ AACCACAAGCTTTGTG-1 6 65095532 A G + 1 1 A>G A>G +AACAAGACATGGCTGC-1_1_6576975_A_G_+ AACAAGACATGGCTGC-1 1 6576975 A G + 1 1 A>G A>G +AACGGGATCTGTGCTC-1_MT_9160_C_T_+ AACGGGATCTGTGCTC-1 MT 9160 C T + 1 2 C>T C>T +AACCACAAGCTTTGTG-1_8_64739906_G_A_- AACCACAAGCTTTGTG-1 8 64739906 G A - 1 1 G>A C>T +AAACGCTGTAGCTTTG-1_17_39847403_T_G_+ AAACGCTGTAGCTTTG-1 17 39847403 T G + 1 1 T>G T>G +AAACGAACACGACTAT-1_9_3024417_A_T_- AAACGAACACGACTAT-1 9 3024417 A T - 1 1 A>T T>A +AACAAGACAACACTAC-1_11_6419684_C_T_+ AACAAGACAACACTAC-1 11 6419684 C T + 1 1 C>T C>T +AAATGGAAGCCGGATA-1_15_50658431_A_T_- AAATGGAAGCCGGATA-1 15 50658431 A T - 1 1 A>T T>A +AAGAACAGTAAGATAC-1_1_38042857_A_G_+ AAGAACAGTAAGATAC-1 1 38042857 A G + 1 1 A>G A>G +AAGACTCCAGGCGAAT-1_6_54432273_G_T_+ AAGACTCCAGGCGAAT-1 6 54432273 G T + 1 1 G>T G>T +AACAAGAAGCAATTAG-1_3_18221619_C_T_- AACAAGAAGCAATTAG-1 3 18221619 C T - 1 1 C>T G>A +AAAGGGCCACACTTAG-1_3_158072573_T_C_- AAAGGGCCACACTTAG-1 3 158072573 T C - 1 1 T>C A>G +AACAAAGCAATCAGCT-1_5_71060696_G_T_- AACAAAGCAATCAGCT-1 5 71060696 G T - 1 1 G>T C>A +AAATGGAAGCAGATAT-1_9_37545132_G_A_- AAATGGAAGCAGATAT-1 9 37545132 G A - 1 1 G>A C>T +AACGGGATCTTCCCGA-1_5_146261080_C_A_+ AACGGGATCTTCCCGA-1 5 146261080 C A + 1 1 C>A C>A +AAGATAGAGGAATCGC-1_4_155957499_A_G_+ AAGATAGAGGAATCGC-1 4 155957499 A G + 1 1 A>G A>G +AAGATAGCACGCGTGT-1_2_174462532_T_A_- AAGATAGCACGCGTGT-1 2 174462532 T A - 1 1 T>A A>T +AACCACAAGCCTTTCC-1_12_79369775_G_A_+ AACCACAAGCCTTTCC-1 12 79369775 G A + 1 1 G>A G>A +AACACACTCTGCGGAC-1_7_15947111_T_C_- AACACACTCTGCGGAC-1 7 15947111 T C - 1 1 T>C A>G +AACGTCACACGAGGTA-1_X_167207378_C_T_- AACGTCACACGAGGTA-1 X 167207378 C T - 1 1 C>T G>A +AAAGGTAAGACTTCAC-1_X_42109541_C_A_+ AAAGGTAAGACTTCAC-1 X 42109541 C A + 1 1 C>A C>A +AAAGGTATCTTTGCGC-1_4_136051173_C_T_- AAAGGTATCTTTGCGC-1 4 136051173 C T - 1 1 C>T G>A +AAACCCAGTCACCGCA-1_7_38262842_T_C_- AAACCCAGTCACCGCA-1 7 38262842 T C - 1 1 T>C A>G +AACCATGAGCGTCGAA-1_X_75785885_C_T_- AACCATGAGCGTCGAA-1 X 75785885 C T - 1 1 C>T G>A +AACAGGGAGTCATTGC-1_17_39848018_C_T_+ AACAGGGAGTCATTGC-1 17 39848018 C T + 1 1 C>T C>T +AAGAACAGTTGCAAGG-1_4_124855338_G_A_- AAGAACAGTTGCAAGG-1 4 124855338 G A - 1 1 G>A C>T +AAGATAGCAATAACGA-1_19_41918484_A_G_+ AAGATAGCAATAACGA-1 19 41918484 A G + 1 1 A>G A>G +AACCAACTCGATGGAG-1_11_93902340_A_C_+ AACCAACTCGATGGAG-1 11 93902340 A C + 1 1 A>C A>C +AACGTCATCAAGCGTT-1_17_39847607_T_C_- AACGTCATCAAGCGTT-1 17 39847607 T C - 1 1 T>C A>G +AACAACCCAGACGGAT-1_11_30506108_G_A_- AACAACCCAGACGGAT-1 11 30506108 G A - 1 1 G>A C>T +AACTTCTCACAACGTT-1_4_136051627_T_C_- AACTTCTCACAACGTT-1 4 136051627 T C - 1 1 T>C A>G +AAGACTCCATACAGCT-1_4_42927531_A_G_+ AAGACTCCATACAGCT-1 4 42927531 A G + 1 1 A>G A>G +AAAGAACTCTGTCCCA-1_9_3000448_C_T_- AAAGAACTCTGTCCCA-1 9 3000448 C T - 1 1 C>T G>A +AAACGCTCATTCACCC-1_6_71874995_G_A_+ AAACGCTCATTCACCC-1 6 71874995 G A + 1 1 G>A G>A +AACGGGAGTCCAGGTC-1_11_53416562_C_T_+ AACGGGAGTCCAGGTC-1 11 53416562 C T + 1 1 C>T C>T +AAACGCTCAGTAGGAC-1_5_151651227_C_T_- AAACGCTCAGTAGGAC-1 5 151651227 C T - 1 1 C>T G>A +AACCTGATCTTCGTGC-1_6_22308052_A_G_- AACCTGATCTTCGTGC-1 6 22308052 A G - 1 1 A>G T>C +AACGGGACATTCCTAT-1_17_39848018_C_T_+ AACGGGACATTCCTAT-1 17 39848018 C T + 2 2 C>T C>T +AAGAACAGTAGGACTG-1_7_4133986_A_C_+ AAGAACAGTAGGACTG-1 7 4133986 A C + 1 1 A>C A>C +AAGAACACATTCCTCG-1_17_39848018_C_T_+ AAGAACACATTCCTCG-1 17 39848018 C T + 1 1 C>T C>T +AAGATAGAGCATGAAT-1_11_42131786_G_A_- AAGATAGAGCATGAAT-1 11 42131786 G A - 1 1 G>A C>T +AAAGTCCGTACGTACT-1_1_68878407_C_T_- AAAGTCCGTACGTACT-1 1 68878407 C T - 1 1 C>T G>A +AAACGCTGTCCACATA-1_9_3003389_C_A_- AAACGCTGTCCACATA-1 9 3003389 C A - 1 1 C>A G>T +AACGAAACAGGATCTT-1_17_74618450_T_A_+ AACGAAACAGGATCTT-1 17 74618450 T A + 1 1 T>A T>A +AACAGGGGTCGTGATT-1_2_98662301_G_T_+ AACAGGGGTCGTGATT-1 2 98662301 G T + 1 1 G>T G>T +AACGTCACAAGAATGT-1_9_50344232_G_T_- AACGTCACAAGAATGT-1 9 50344232 G T - 1 1 G>T C>A +AACGAAACAATTCACG-1_4_86854899_G_T_- AACGAAACAATTCACG-1 4 86854899 G T - 1 1 G>T C>A +AAGAACAGTTCGGTTA-1_12_21390920_A_G_- AAGAACAGTTCGGTTA-1 12 21390920 A G - 1 1 A>G T>C +AAACGCTCAGTAGGAC-1_15_77184961_A_G_- AAACGCTCAGTAGGAC-1 15 77184961 A G - 1 1 A>G T>C +AAGAACAAGGTCGAGT-1_9_3024451_T_G_- AAGAACAAGGTCGAGT-1 9 3024451 T G - 1 1 T>G A>C +AAAGGTAAGTACTGTC-1_5_106616805_C_A_- AAAGGTAAGTACTGTC-1 5 106616805 C A - 1 1 C>A G>T +AACAAAGAGTGGAATT-1_5_146261106_C_G_+ AACAAAGAGTGGAATT-1 5 146261106 C G + 1 1 C>G C>G +AAACGCTCAGTAGGAC-1_7_59281123_T_C_+ AAACGCTCAGTAGGAC-1 7 59281123 T C + 1 1 T>C T>C +AACAAGACAACAAGTA-1_1_85908420_A_G_+ AACAAGACAACAAGTA-1 1 85908420 A G + 1 1 A>G A>G +AAACCCACAATCTCTT-1_15_30282428_T_C_+ AAACCCACAATCTCTT-1 15 30282428 T C + 1 1 T>C T>C +AAGACTCAGAGTTGCG-1_19_9984860_T_C_+ AAGACTCAGAGTTGCG-1 19 9984860 T C + 1 1 T>C T>C +AACAAAGAGGTGCGAT-1_2_24972002_G_A_+ AACAAAGAGGTGCGAT-1 2 24972002 G A + 1 1 G>A G>A +AACCTTTAGATCGGTG-1_5_49399469_G_C_- AACCTTTAGATCGGTG-1 5 49399469 G C - 1 1 G>C C>G +AACCAACGTGCCTAAT-1_2_156164905_G_A_- AACCAACGTGCCTAAT-1 2 156164905 G A - 1 1 G>A C>T +AACGGGAGTTGTGCCG-1_3_137866741_A_G_+ AACGGGAGTTGTGCCG-1 3 137866741 A G + 1 1 A>G A>G +AAAGGTAAGACTTCAC-1_15_100964221_C_T_+ AAAGGTAAGACTTCAC-1 15 100964221 C T + 1 1 C>T C>T +AACGTCACAACCAGAG-1_13_44869613_G_A_+ AACGTCACAACCAGAG-1 13 44869613 G A + 1 1 G>A G>A +AACGGGAAGTTGCCCG-1_19_5463847_C_T_+ AACGGGAAGTTGCCCG-1 19 5463847 C T + 1 1 C>T C>T +AAAGGATAGATGAAGG-1_2_5293722_T_A_- AAAGGATAGATGAAGG-1 2 5293722 T A - 1 1 T>A A>T +AAGATAGCATGGGAAC-1_16_57391677_C_G_- AAGATAGCATGGGAAC-1 16 57391677 C G - 1 1 C>G G>C +AAATGGAAGTAGAATC-1_1_87856650_A_G_+ AAATGGAAGTAGAATC-1 1 87856650 A G + 1 1 A>G A>G +AACACACAGTGCACAG-1_9_107614339_A_T_- AACACACAGTGCACAG-1 9 107614339 A T - 1 1 A>T T>A +AACCTTTTCGCAGTCG-1_2_37566405_C_T_+ AACCTTTTCGCAGTCG-1 2 37566405 C T + 1 1 C>T C>T +AAATGGACAACTTGGT-1_17_39848100_A_T_+ AAATGGACAACTTGGT-1 17 39848100 A T + 1 1 A>T A>T +AAACGCTAGGTTACAA-1_16_17573137_C_G_- AAACGCTAGGTTACAA-1 16 17573137 C G - 1 1 C>G G>C +AAAGGGCAGACTACCT-1_11_4737031_G_A_- AAAGGGCAGACTACCT-1 11 4737031 G A - 1 1 G>A C>T +AAAGGTACAAATACAG-1_7_16961156_G_T_+ AAAGGTACAAATACAG-1 7 16961156 G T + 1 1 G>T G>T +AACTTCTAGGGATCTG-1_3_130059640_T_G_- AACTTCTAGGGATCTG-1 3 130059640 T G - 1 1 T>G A>C +AAAGTCCGTGACTGTT-1_11_114668580_C_T_+ AAAGTCCGTGACTGTT-1 11 114668580 C T + 1 1 C>T C>T +AACCCAAGTCATAACC-1_X_106203602_C_T_+ AACCCAAGTCATAACC-1 X 106203602 C T + 1 1 C>T C>T +AAAGGTAAGGCATCTT-1_16_57391685_G_A_- AAAGGTAAGGCATCTT-1 16 57391685 G A - 1 1 G>A C>T +AAAGTCCGTACAAGTA-1_4_133419377_T_C_+ AAAGTCCGTACAAGTA-1 4 133419377 T C + 1 1 T>C T>C +AAAGGTAGTACACGCC-1_7_24885474_G_A_+ AAAGGTAGTACACGCC-1 7 24885474 G A + 1 1 G>A G>A +AAAGGTAAGACTTCAC-1_1_58470696_T_C_- AAAGGTAAGACTTCAC-1 1 58470696 T C - 1 1 T>C A>G +AACCTTTCAGACCTGC-1_X_167207257_G_A_- AACCTTTCAGACCTGC-1 X 167207257 G A - 1 2 G>A C>T +AACTTCTAGAGGTCGT-1_16_7278283_C_T_+ AACTTCTAGAGGTCGT-1 16 7278283 C T + 1 1 C>T C>T +AACAACCAGTAATACG-1_13_110400693_T_A_+ AACAACCAGTAATACG-1 13 110400693 T A + 1 1 T>A T>A +AACCAACTCGATGGAG-1_5_143505607_A_T_- AACCAACTCGATGGAG-1 5 143505607 A T - 1 1 A>T T>A +AACAACCAGTAACAGT-1_12_38136563_A_G_+ AACAACCAGTAACAGT-1 12 38136563 A G + 1 1 A>G A>G +AACAGGGTCGGTCGGT-1_9_70583981_A_T_+ AACAGGGTCGGTCGGT-1 9 70583981 A T + 1 1 A>T A>T +AAACCCAGTTTCGTTT-1_17_39847435_A_G_+ AAACCCAGTTTCGTTT-1 17 39847435 A G + 1 1 A>G A>G +AACGAAAAGACCTGGA-1_5_146261106_C_G_+ AACGAAAAGACCTGGA-1 5 146261106 C G + 1 1 C>G C>G +AAACCCACATCACCAA-1_2_156145702_C_T_+ AAACCCACATCACCAA-1 2 156145702 C T + 1 1 C>T C>T +AAGACTCAGCGATTCT-1_1_59763940_G_A_+ AAGACTCAGCGATTCT-1 1 59763940 G A + 1 1 G>A G>A +AAATGGACACCCGTAG-1_5_146261080_C_A_+ AAATGGACACCCGTAG-1 5 146261080 C A + 1 1 C>A C>A +AAGATAGGTCATCAGT-1_11_16504754_G_T_- AAGATAGGTCATCAGT-1 11 16504754 G T - 1 1 G>T C>A +AAAGAACAGCCTGAAG-1_18_38186147_C_G_- AAAGAACAGCCTGAAG-1 18 38186147 C G - 1 1 C>G G>C +AAAGAACAGCTAGATA-1_16_96525622_C_T_+ AAAGAACAGCTAGATA-1 16 96525622 C T + 1 1 C>T C>T +AAACGCTAGGTTACAA-1_11_40739957_A_T_+ AAACGCTAGGTTACAA-1 11 40739957 A T + 1 1 A>T A>T +AAAGGTAAGACTTCAC-1_19_5802641_A_T_- AAAGGTAAGACTTCAC-1 19 5802641 A T - 1 3 A>T T>A +AAATGGATCTGCGGCA-1_5_71763538_A_C_+ AAATGGATCTGCGGCA-1 5 71763538 A C + 1 1 A>C A>C +AACAAAGCACGGCACT-1_X_136838188_A_G_+ AACAAAGCACGGCACT-1 X 136838188 A G + 1 1 A>G A>G +AACCACAAGCTTTGTG-1_9_72749678_C_T_+ AACCACAAGCTTTGTG-1 9 72749678 C T + 1 1 C>T C>T +AACGAAAAGGACAAGA-1_15_98737819_G_A_- AACGAAAAGGACAAGA-1 15 98737819 G A - 1 1 G>A C>T +AAATGGAAGCAGATAT-1_7_45803940_T_A_+ AAATGGAAGCAGATAT-1 7 45803940 T A + 1 1 T>A T>A +AAAGGTACACCGTGCA-1_17_65985132_A_T_- AAAGGTACACCGTGCA-1 17 65985132 A T - 1 1 A>T T>A +AACCTGATCTAGTACG-1_X_60384774_G_A_- AACCTGATCTAGTACG-1 X 60384774 G A - 1 1 G>A C>T +AAATGGAAGCAGATAT-1_16_59978424_G_C_- AAATGGAAGCAGATAT-1 16 59978424 G C - 1 1 G>C C>G +AAACGCTCAGTAGGAC-1_19_7198565_G_A_- AAACGCTCAGTAGGAC-1 19 7198565 G A - 1 1 G>A C>T +AAACCCACAATCTCTT-1_18_82585568_A_G_+ AAACCCACAATCTCTT-1 18 82585568 A G + 1 1 A>G A>G +AAACCCACATTCACAG-1_17_39847435_A_G_+ AAACCCACATTCACAG-1 17 39847435 A G + 1 1 A>G A>G +AACCAACTCGATGGAG-1_1_180802849_G_A_- AACCAACTCGATGGAG-1 1 180802849 G A - 1 1 G>A C>T +AACCCAAAGAATTGTG-1_12_29732467_C_A_+ AACCCAAAGAATTGTG-1 12 29732467 C A + 1 1 C>A C>A +AAAGTGATCTCGGCTT-1_2_83850627_A_G_+ AAAGTGATCTCGGCTT-1 2 83850627 A G + 1 1 A>G A>G +AAACGCTAGGTAGGCT-1_7_109034311_C_T_+ AAACGCTAGGTAGGCT-1 7 109034311 C T + 1 1 C>T C>T +AACAGGGTCTTCCACG-1_7_87584361_C_G_+ AACAGGGTCTTCCACG-1 7 87584361 C G + 1 1 C>G C>G +AACAACCCAGACGGAT-1_3_96195365_G_A_+ AACAACCCAGACGGAT-1 3 96195365 G A + 1 1 G>A G>A +AACCATGTCATCGCTC-1_1_46852080_G_A_- AACCATGTCATCGCTC-1 1 46852080 G A - 1 1 G>A C>T +AACGGGAGTTGTGCCG-1_17_39847390_A_T_+ AACGGGAGTTGTGCCG-1 17 39847390 A T + 1 1 A>T A>T +AACGAAAGTCCAAATC-1_7_93081498_T_C_+ AACGAAAGTCCAAATC-1 7 93081498 T C + 1 1 T>C T>C +AAACCCATCGGATAAA-1_2_119586852_C_T_+ AAACCCATCGGATAAA-1 2 119586852 C T + 1 1 C>T C>T +AAGACTCAGAAGCTCG-1_15_102663055_A_G_- AAGACTCAGAAGCTCG-1 15 102663055 A G - 1 1 A>G T>C +AACGAAACAAATACAG-1_11_55395849_T_C_- AACGAAACAAATACAG-1 11 55395849 T C - 1 1 T>C A>G +AAAGGGCTCTGCTAGA-1_9_123461940_T_G_+ AAAGGGCTCTGCTAGA-1 9 123461940 T G + 1 1 T>G T>G +AACGAAATCTTGAACG-1_10_127088430_G_C_+ AACGAAATCTTGAACG-1 10 127088430 G C + 1 1 G>C G>C AACACACCATAACGGG-1_19_5802636_G_A_- AACACACCATAACGGG-1 19 5802636 G A - 1 4 G>A C>T -AACCTTTCACACCTGG-1_19_5801965_A_G_- AACCTTTCACACCTGG-1 19 5801965 A G - 1 2 A>G T>C -AACTTCTAGGGATCTG-1_19_5107949_C_G_- AACTTCTAGGGATCTG-1 19 5107949 C G - 1 1 C>G G>C -AAAGTCCAGTCGGCCT-1_19_44139340_G_A_- AAAGTCCAGTCGGCCT-1 19 44139340 G A - 1 1 G>A C>T -AAACCCACACCGTGGT-1_19_9984862_C_T_+ AAACCCACACCGTGGT-1 19 9984862 C T + 1 2 C>T C>T -AAAGGATAGTCCTGTA-1_19_5802655_T_C_- AAAGGATAGTCCTGTA-1 19 5802655 T C - 1 2 T>C A>G +AAACGCTCAGTAGGAC-1_9_103185078_C_T_+ AAACGCTCAGTAGGAC-1 9 103185078 C T + 1 1 C>T C>T +AAATGGAAGTCGGCCT-1_X_130395847_G_T_+ AAATGGAAGTCGGCCT-1 X 130395847 G T + 1 1 G>T G>T +AAAGAACCAACTTCTT-1_2_144142575_A_G_- AAAGAACCAACTTCTT-1 2 144142575 A G - 1 1 A>G T>C +AACAACCGTTGCAACT-1_10_3946231_T_G_+ AACAACCGTTGCAACT-1 10 3946231 T G + 1 1 T>G T>G +AAAGTCCGTGAGTAAT-1_6_65907615_A_T_+ AAAGTCCGTGAGTAAT-1 6 65907615 A T + 1 1 A>T A>T +AACCAACCAATAGGGC-1_9_3000345_A_C_- AACCAACCAATAGGGC-1 9 3000345 A C - 1 1 A>C T>G +AAGAACAGTTGCTCCT-1_4_116990344_A_T_- AAGAACAGTTGCTCCT-1 4 116990344 A T - 1 1 A>T T>A +AACACACTCTGCGGAC-1_17_29100723_T_A_+ AACACACTCTGCGGAC-1 17 29100723 T A + 1 1 T>A T>A +AAACGAACAGAACTTC-1_17_39847390_A_T_- AAACGAACAGAACTTC-1 17 39847390 A T - 1 1 A>T T>A +AACCAACGTCCCTGTT-1_5_146261076_T_C_+ AACCAACGTCCCTGTT-1 5 146261076 T C + 1 1 T>C T>C +AAAGTCCAGTATAACG-1_17_39847607_T_C_+ AAAGTCCAGTATAACG-1 17 39847607 T C + 1 1 T>C T>C +AAACCCACATATCTGG-1_6_124917788_T_G_- AAACCCACATATCTGG-1 6 124917788 T G - 1 1 T>G A>C +AAAGTCCGTACGTACT-1_8_125107577_C_T_+ AAAGTCCGTACGTACT-1 8 125107577 C T + 1 1 C>T C>T +AACTTCTCACTAACGT-1_6_17666590_T_C_+ AACTTCTCACTAACGT-1 6 17666590 T C + 1 1 T>C T>C +AACCACATCTTACACT-1_18_34315126_G_C_+ AACCACATCTTACACT-1 18 34315126 G C + 1 1 G>C G>C +AACCCAAAGCAAATGT-1_11_6475031_G_A_- AACCCAAAGCAAATGT-1 11 6475031 G A - 1 1 G>A C>T +AAAGGATAGACTCAAA-1_17_39847426_T_C_- AAAGGATAGACTCAAA-1 17 39847426 T C - 1 1 T>C A>G +AAACCCATCAAGCCAT-1_1_106173375_T_G_+ AAACCCATCAAGCCAT-1 1 106173375 T G + 1 1 T>G T>G +AAGACTCAGAAGCTCG-1_7_131570495_G_T_+ AAGACTCAGAAGCTCG-1 7 131570495 G T + 1 1 G>T G>T +AACCAACTCGATGGAG-1_16_91563845_G_T_+ AACCAACTCGATGGAG-1 16 91563845 G T + 1 1 G>T G>T +AACAAGAGTTCTCAGA-1_18_46790434_T_C_+ AACAAGAGTTCTCAGA-1 18 46790434 T C + 1 1 T>C T>C +AAATGGACACCCGTAG-1_7_100814051_A_C_+ AAATGGACACCCGTAG-1 7 100814051 A C + 1 1 A>C A>C +AACAACCGTAGCCCTG-1_5_142903119_T_G_- AACAACCGTAGCCCTG-1 5 142903119 T G - 1 1 T>G A>C +AAGACAAAGGGCAGGA-1_9_45753597_C_T_+ AAGACAAAGGGCAGGA-1 9 45753597 C T + 1 1 C>T C>T +AACAAAGTCTGAGAAA-1_X_105123754_C_T_+ AACAAAGTCTGAGAAA-1 X 105123754 C T + 1 1 C>T C>T +AACAACCTCGCAGAGA-1_17_39848100_A_T_+ AACAACCTCGCAGAGA-1 17 39848100 A T + 1 1 A>T A>T +AAGACTCTCGGAGATG-1_7_63531613_C_A_+ AAGACTCTCGGAGATG-1 7 63531613 C A + 1 1 C>A C>A +AAATGGAAGCAGATAT-1_19_60524878_T_C_- AAATGGAAGCAGATAT-1 19 60524878 T C - 1 1 T>C A>G +AACTTCTAGCAGATAT-1_1_128183203_C_T_+ AACTTCTAGCAGATAT-1 1 128183203 C T + 1 1 C>T C>T +AAGACTCTCGAGTACT-1_8_123103355_C_T_+ AAGACTCTCGAGTACT-1 8 123103355 C T + 1 1 C>T C>T +AACTTCTCATGAATAG-1_1_123990941_A_T_- AACTTCTCATGAATAG-1 1 123990941 A T - 1 1 A>T T>A +AACCCAATCCTCTAGC-1_19_5802656_C_T_- AACCCAATCCTCTAGC-1 19 5802656 C T - 1 2 C>T G>A +AAGACTCTCGAGTACT-1_10_127093008_G_T_+ AAGACTCTCGAGTACT-1 10 127093008 G T + 1 1 G>T G>T +AACAACCAGACGACTG-1_17_39847232_G_T_+ AACAACCAGACGACTG-1 17 39847232 G T + 1 1 G>T G>T +AAAGTCCAGCGGACAT-1_17_39846986_T_A_+ AAAGTCCAGCGGACAT-1 17 39846986 T A + 1 1 T>A T>A +AAAGTGAGTCAAGGCA-1_11_101323319_C_T_+ AAAGTGAGTCAAGGCA-1 11 101323319 C T + 1 1 C>T C>T +AACGAAATCTAGTCAG-1_18_80292514_A_C_+ AACGAAATCTAGTCAG-1 18 80292514 A C + 1 1 A>C A>C +AACGAAAAGCAATTCC-1_17_78508113_T_G_+ AACGAAAAGCAATTCC-1 17 78508113 T G + 1 1 T>G T>G +AAGAACAAGTCTCTGA-1_9_3000572_C_A_- AAGAACAAGTCTCTGA-1 9 3000572 C A - 1 1 C>A G>T +AAACGAAGTGCTCTCT-1_19_5799948_C_T_- AAACGAAGTGCTCTCT-1 19 5799948 C T - 1 1 C>T G>A +AAAGAACTCGTCCTCA-1_3_89782471_C_T_+ AAAGAACTCGTCCTCA-1 3 89782471 C T + 1 1 C>T C>T +AACCACAAGTGGACTG-1_9_3000551_T_A_- AACCACAAGTGGACTG-1 9 3000551 T A - 1 1 T>A A>T +AAACGAAGTGCTCTCT-1_19_5800015_G_T_- AAACGAAGTGCTCTCT-1 19 5800015 G T - 1 1 G>T C>A +AACGAAATCTTGAACG-1_4_83222159_C_T_- AACGAAATCTTGAACG-1 4 83222159 C T - 1 1 C>T G>A +AAACGAAAGCGAACTG-1_4_123194636_C_T_+ AAACGAAAGCGAACTG-1 4 123194636 C T + 1 1 C>T C>T +AAGACAAAGGCCCACT-1_16_57391680_C_T_- AAGACAAAGGCCCACT-1 16 57391680 C T - 1 1 C>T G>A +AAGATAGCATGGGAAC-1_13_86046648_T_C_- AAGATAGCATGGGAAC-1 13 86046648 T C - 1 1 T>C A>G +AACGTCACATAGATGA-1_2_121449980_A_G_+ AACGTCACATAGATGA-1 2 121449980 A G + 1 1 A>G A>G +AACAACCGTACTCAAC-1_4_130337168_A_C_- AACAACCGTACTCAAC-1 4 130337168 A C - 1 1 A>C T>G +AAAGGTAAGGAACGTC-1_6_54892497_C_T_+ AAAGGTAAGGAACGTC-1 6 54892497 C T + 1 1 C>T C>T +AAGAACAAGGGTTTCT-1_1_175745650_T_A_+ AAGAACAAGGGTTTCT-1 1 175745650 T A + 1 1 T>A T>A +AACCAACCAAGTTGGG-1_13_41276380_C_T_+ AACCAACCAAGTTGGG-1 13 41276380 C T + 1 1 C>T C>T +AACAAAGGTGTAGTGG-1_18_60778448_C_T_+ AACAAAGGTGTAGTGG-1 18 60778448 C T + 1 1 C>T C>T +AACTTCTCATGAATAG-1_11_5071588_G_T_- AACTTCTCATGAATAG-1 11 5071588 G T - 1 1 G>T C>A +AACGGGAGTCAGGCAA-1_7_19696448_T_C_- AACGGGAGTCAGGCAA-1 7 19696448 T C - 1 2 T>C A>G +AACCAACCAGTCGCTG-1_1_85908515_C_T_+ AACCAACCAGTCGCTG-1 1 85908515 C T + 1 1 C>T C>T +AAACGCTGTCAACACT-1_17_31091201_G_T_+ AAACGCTGTCAACACT-1 17 31091201 G T + 1 1 G>T G>T +AACAAGACAGCACCCA-1_X_167207188_C_A_- AACAAGACAGCACCCA-1 X 167207188 C A - 1 1 C>A G>T +AAAGGATTCCTGTACC-1_12_99645645_A_G_+ AAAGGATTCCTGTACC-1 12 99645645 A G + 1 1 A>G A>G +AAAGTGACATGTGTCA-1_18_34937696_G_A_- AAAGTGACATGTGTCA-1 18 34937696 G A - 1 1 G>A C>T +AAACGAAAGCGAACTG-1_19_4738564_C_G_+ AAACGAAAGCGAACTG-1 19 4738564 C G + 1 1 C>G C>G +AACCATGGTGAGTTTC-1_9_14784241_G_T_- AACCATGGTGAGTTTC-1 9 14784241 G T - 1 1 G>T C>A +AAATGGACAAGCGCAA-1_1_39371341_G_A_+ AAATGGACAAGCGCAA-1 1 39371341 G A + 1 1 G>A G>A +AAGAACAGTTGGAGGT-1_5_81795210_A_T_- AAGAACAGTTGGAGGT-1 5 81795210 A T - 1 1 A>T T>A +AAAGGGCCAGCGCTTG-1_5_29786088_G_A_+ AAAGGGCCAGCGCTTG-1 5 29786088 G A + 1 1 G>A G>A +AACGAAAAGTGATAAC-1_5_129881325_C_A_- AACGAAAAGTGATAAC-1 5 129881325 C A - 1 1 C>A G>T +AAGACTCGTATCTCTT-1_17_70963813_G_A_+ AAGACTCGTATCTCTT-1 17 70963813 G A + 1 1 G>A G>A +AAACCCACATATCTGG-1_6_112730165_T_C_- AAACCCACATATCTGG-1 6 112730165 T C - 1 1 T>C A>G +AAACGAACAAACGGCA-1_9_3028856_G_T_- AAACGAACAAACGGCA-1 9 3028856 G T - 1 1 G>T C>A +AACTTCTCACTAACGT-1_6_86979699_A_G_+ AACTTCTCACTAACGT-1 6 86979699 A G + 1 1 A>G A>G +AACACACCAGACCAGA-1_X_136838189_A_G_+ AACACACCAGACCAGA-1 X 136838189 A G + 1 3 A>G A>G +AACCAACTCGATGGAG-1_19_7215356_G_A_- AACCAACTCGATGGAG-1 19 7215356 G A - 1 2 G>A C>T +AAAGAACTCGTGGGAA-1_8_94179851_C_T_+ AAAGAACTCGTGGGAA-1 8 94179851 C T + 1 1 C>T C>T +AACAAAGTCTTAGCTT-1_16_57391454_T_C_- AACAAAGTCTTAGCTT-1 16 57391454 T C - 1 1 T>C A>G +AACAAAGAGGTGCGAT-1_5_112419328_G_A_- AACAAAGAGGTGCGAT-1 5 112419328 G A - 1 1 G>A C>T +AACCAACCAGATCCAT-1_14_63820240_C_T_+ AACCAACCAGATCCAT-1 14 63820240 C T + 1 1 C>T C>T +AAGACTCGTGGCTAGA-1_17_26972378_C_T_+ AAGACTCGTGGCTAGA-1 17 26972378 C T + 1 1 C>T C>T +AACGTCACAAACAGGC-1_2_21830248_C_T_+ AACGTCACAAACAGGC-1 2 21830248 C T + 1 1 C>T C>T +AACCAACGTCCCTGTT-1_11_79943291_G_A_- AACCAACGTCCCTGTT-1 11 79943291 G A - 1 1 G>A C>T +AACTTCTAGCAGATAT-1_9_37545212_C_G_- AACTTCTAGCAGATAT-1 9 37545212 C G - 1 1 C>G G>C +AAAGGTACAAATACAG-1_1_91932729_C_T_- AAAGGTACAAATACAG-1 1 91932729 C T - 1 1 C>T G>A +AACCACAAGCTTTGTG-1_5_25375915_G_A_- AACCACAAGCTTTGTG-1 5 25375915 G A - 1 1 G>A C>T +AAGAACAGTTCGGTTA-1_18_82555013_T_C_+ AAGAACAGTTCGGTTA-1 18 82555013 T C + 1 1 T>C T>C +AAGAACAGTTGCTCCT-1_4_116992624_A_G_- AAGAACAGTTGCTCCT-1 4 116992624 A G - 1 1 A>G T>C +AACAGGGTCCCGTAAA-1_7_125467705_G_A_- AACAGGGTCCCGTAAA-1 7 125467705 G A - 1 1 G>A C>T +AAACGAACAAATCAGA-1_17_39847403_T_G_+ AAACGAACAAATCAGA-1 17 39847403 T G + 1 1 T>G T>G +AAACGCTTCTGAGCAT-1_17_39847607_T_C_- AAACGCTTCTGAGCAT-1 17 39847607 T C - 1 1 T>C A>G +AACGAAATCCTGTAAG-1_4_117403828_A_G_- AACGAAATCCTGTAAG-1 4 117403828 A G - 1 1 A>G T>C +AACCATGAGACGAAGA-1_2_153767069_C_T_+ AACCATGAGACGAAGA-1 2 153767069 C T + 1 1 C>T C>T +AACCACAGTCTACAAC-1_2_121935593_C_T_+ AACCACAGTCTACAAC-1 2 121935593 C T + 1 1 C>T C>T +AAGAACAGTTCGGTTA-1_4_123194636_C_T_+ AAGAACAGTTCGGTTA-1 4 123194636 C T + 1 1 C>T C>T +AAACCCACAGATTAAG-1_3_90213287_G_A_- AAACCCACAGATTAAG-1 3 90213287 G A - 1 1 G>A C>T +AACAAGAGTTACCTGA-1_2_62597790_G_A_- AACAAGAGTTACCTGA-1 2 62597790 G A - 1 1 G>A C>T +AAAGTCCTCTTCCCGA-1_10_60302559_C_T_+ AAAGTCCTCTTCCCGA-1 10 60302559 C T + 1 1 C>T C>T +AACACACTCTGCGGAC-1_16_55970169_T_C_+ AACACACTCTGCGGAC-1 16 55970169 T C + 1 1 T>C T>C +AAACGAACAACCGACC-1_8_79677241_A_T_+ AAACGAACAACCGACC-1 8 79677241 A T + 1 1 A>T A>T +AAATGGAGTACCGGAA-1_MT_6648_T_G_+ AAATGGAGTACCGGAA-1 MT 6648 T G + 1 1 T>G T>G +AAACCCACATATCTGG-1_18_23622386_T_C_+ AAACCCACATATCTGG-1 18 23622386 T C + 1 1 T>C T>C +AACCTTTTCCTCGCAT-1_10_120977820_T_C_- AACCTTTTCCTCGCAT-1 10 120977820 T C - 1 1 T>C A>G +AAAGTCCAGTCGGCCT-1_17_39847056_G_A_+ AAAGTCCAGTCGGCCT-1 17 39847056 G A + 1 2 G>A G>A +AAGATAGAGCTTGTGT-1_9_69491496_G_A_+ AAGATAGAGCTTGTGT-1 9 69491496 G A + 1 1 G>A G>A +AAATGGAAGTAGAATC-1_6_83087902_A_G_+ AAATGGAAGTAGAATC-1 6 83087902 A G + 1 1 A>G A>G +AAGACTCGTCCACATA-1_16_57391679_G_T_- AAGACTCGTCCACATA-1 16 57391679 G T - 1 1 G>T C>A +AACCAACTCGGAAGGT-1_15_79402125_A_T_- AACCAACTCGGAAGGT-1 15 79402125 A T - 1 1 A>T T>A +AAACCCACACCGTGGT-1_7_16915459_G_T_- AAACCCACACCGTGGT-1 7 16915459 G T - 1 1 G>T C>A +AAACGCTGTCAACACT-1_16_45711487_G_C_- AAACGCTGTCAACACT-1 16 45711487 G C - 1 1 G>C C>G +AACGTCAGTGCAACAG-1_17_39847435_A_G_+ AACGTCAGTGCAACAG-1 17 39847435 A G + 1 1 A>G A>G +AACCTGAGTCTGTAGT-1_16_23334618_A_C_+ AACCTGAGTCTGTAGT-1 16 23334618 A C + 1 1 A>C A>C +AACACACCAGACCAGA-1_X_136838204_T_A_+ AACACACCAGACCAGA-1 X 136838204 T A + 1 3 T>A T>A +AACAAAGAGGTACAGC-1_7_45175935_G_A_+ AACAAAGAGGTACAGC-1 7 45175935 G A + 1 1 G>A G>A +AAAGGATGTACCATAC-1_1_93015675_G_A_- AAAGGATGTACCATAC-1 1 93015675 G A - 1 1 G>A C>T +AAATGGAGTAGCGCCT-1_2_98666555_A_T_- AAATGGAGTAGCGCCT-1 2 98666555 A T - 1 1 A>T T>A +AAGACAAAGGGCAGGA-1_9_3000527_T_C_- AAGACAAAGGGCAGGA-1 9 3000527 T C - 1 1 T>C A>G +AACACACTCGTAGCCG-1_19_5802413_C_G_- AACACACTCGTAGCCG-1 19 5802413 C G - 1 1 C>G G>C +AACCAACCAGCAATTC-1_10_60135047_A_C_+ AACCAACCAGCAATTC-1 10 60135047 A C + 1 1 A>C A>C +AACGGGACATTCCTAT-1_2_98666977_G_C_- AACGGGACATTCCTAT-1 2 98666977 G C - 1 1 G>C C>G +AACCACACAACAACAA-1_17_39847557_G_A_+ AACCACACAACAACAA-1 17 39847557 G A + 1 1 G>A G>A +AACCCAAGTCATAACC-1_7_28376782_C_T_- AACCCAAGTCATAACC-1 7 28376782 C T - 1 1 C>T G>A +AACAAAGCACCGGTCA-1_16_57391553_G_A_- AACAAAGCACCGGTCA-1 16 57391553 G A - 1 1 G>A C>T +AAACGCTTCTCCTGCA-1_17_39848018_C_T_+ AAACGCTTCTCCTGCA-1 17 39848018 C T + 1 1 C>T C>T +AAATGGAAGGGCAAGG-1_17_39847607_T_C_- AAATGGAAGGGCAAGG-1 17 39847607 T C - 1 1 T>C A>G +AAATGGAAGTAGAATC-1_10_23787200_G_A_- AAATGGAAGTAGAATC-1 10 23787200 G A - 1 1 G>A C>T +AACACACGTGTTGCCG-1_11_77711993_T_A_+ AACACACGTGTTGCCG-1 11 77711993 T A + 1 1 T>A T>A +AACGGGAAGTTGCCCG-1_12_110691222_G_A_- AACGGGAAGTTGCCCG-1 12 110691222 G A - 1 1 G>A C>T +AACAGGGCAGATTTCG-1_5_123728861_A_G_- AACAGGGCAGATTTCG-1 5 123728861 A G - 1 1 A>G T>C +AACCCAAAGATTGTGA-1_17_39847426_T_C_+ AACCCAAAGATTGTGA-1 17 39847426 T C + 1 1 T>C T>C +AAAGTCCTCTGCGATA-1_2_51707046_T_C_- AAAGTCCTCTGCGATA-1 2 51707046 T C - 1 1 T>C A>G +AAGAACATCGAACACT-1_11_69340839_T_G_+ AAGAACATCGAACACT-1 11 69340839 T G + 1 1 T>G T>G +AACCCAACAGCCCACA-1_17_39848018_C_T_+ AACCCAACAGCCCACA-1 17 39848018 C T + 1 1 C>T C>T +AAGAACAAGGGTTTCT-1_2_66342091_T_C_- AAGAACAAGGGTTTCT-1 2 66342091 T C - 1 1 T>C A>G +AACCACATCCTAGCTC-1_5_131096246_T_C_- AACCACATCCTAGCTC-1 5 131096246 T C - 1 1 T>C A>G +AACCAACAGAGGACTC-1_10_83737917_G_A_+ AACCAACAGAGGACTC-1 10 83737917 G A + 1 1 G>A G>A +AAACGCTAGGTTACAA-1_10_5021119_T_C_- AAACGCTAGGTTACAA-1 10 5021119 T C - 1 1 T>C A>G +AAGAACAGTAAGATAC-1_6_11906043_C_A_- AAGAACAGTAAGATAC-1 6 11906043 C A - 1 1 C>A G>T +AAAGGGCGTTCCAAAC-1_8_64968852_G_A_+ AAAGGGCGTTCCAAAC-1 8 64968852 G A + 1 1 G>A G>A +AAGACAAAGCTGACAG-1_9_3017962_G_A_+ AAGACAAAGCTGACAG-1 9 3017962 G A + 1 1 G>A G>A +AACTTCTCAGTTGAAA-1_2_70691581_C_T_+ AACTTCTCAGTTGAAA-1 2 70691581 C T + 1 1 C>T C>T +AACTTCTCAGAAACCG-1_1_167606559_T_A_+ AACTTCTCAGAAACCG-1 1 167606559 T A + 1 1 T>A T>A +AAACGAAAGGGAGGTG-1_8_72523281_A_T_- AAACGAAAGGGAGGTG-1 8 72523281 A T - 1 1 A>T T>A +AACGAAAGTGCGGTAA-1_11_113124906_G_A_- AACGAAAGTGCGGTAA-1 11 113124906 G A - 1 1 G>A C>T +AACAAGAAGTAAACTG-1_11_102887430_T_G_- AACAAGAAGTAAACTG-1 11 102887430 T G - 1 1 T>G A>C +AACCTGACACCAACAT-1_17_39847226_G_T_+ AACCTGACACCAACAT-1 17 39847226 G T + 1 1 G>T G>T +AAACGCTCAGTAGGAC-1_15_5117322_C_T_+ AAACGCTCAGTAGGAC-1 15 5117322 C T + 1 1 C>T C>T +AACGTCAAGCGAGGAG-1_3_90213206_G_A_- AACGTCAAGCGAGGAG-1 3 90213206 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_X_10596375_C_T_+ AAACGCTCAGTAGGAC-1 X 10596375 C T + 1 1 C>T C>T +AAAGGATCATTCAGGT-1_11_61151976_G_C_- AAAGGATCATTCAGGT-1 11 61151976 G C - 1 1 G>C C>G +AAGACTCAGAAATTCG-1_16_57391688_T_G_- AAGACTCAGAAATTCG-1 16 57391688 T G - 1 1 T>G A>C +AAAGGATCATTCAGGT-1_14_93303978_A_G_- AAAGGATCATTCAGGT-1 14 93303978 A G - 1 1 A>G T>C +AACCTGAAGTCTCTGA-1_15_76453193_C_A_- AACCTGAAGTCTCTGA-1 15 76453193 C A - 1 1 C>A G>T +AACCTTTAGGGTATAT-1_5_49307897_C_T_- AACCTTTAGGGTATAT-1 5 49307897 C T - 1 1 C>T G>A +AACAAAGAGGTGCGAT-1_6_5164816_C_T_+ AACAAAGAGGTGCGAT-1 6 5164816 C T + 1 1 C>T C>T +AAATGGATCTGCGGCA-1_5_71763535_C_T_+ AAATGGATCTGCGGCA-1 5 71763535 C T + 1 1 C>T C>T +AAATGGACACCATATG-1_2_98666771_G_C_- AAATGGACACCATATG-1 2 98666771 G C - 1 1 G>C C>G +AAGACAAAGCGCCTTG-1_4_132128914_T_C_- AAGACAAAGCGCCTTG-1 4 132128914 T C - 1 1 T>C A>G +AACAAAGCACGGCACT-1_4_43032495_G_T_- AACAAAGCACGGCACT-1 4 43032495 G T - 1 1 G>T C>A +AAAGTCCCATGTGGCC-1_16_44086502_A_C_- AAAGTCCCATGTGGCC-1 16 44086502 A C - 1 1 A>C T>G +AACCCAACATTCATCT-1_11_3917292_G_A_- AACCCAACATTCATCT-1 11 3917292 G A - 1 1 G>A C>T +AAGATAGCAATAACGA-1_8_94782276_G_A_+ AAGATAGCAATAACGA-1 8 94782276 G A + 1 1 G>A G>A +AACTTCTTCTTAATCC-1_3_144597438_C_T_+ AACTTCTTCTTAATCC-1 3 144597438 C T + 1 1 C>T C>T +AAGACAAAGCATGCGA-1_13_11606995_G_A_- AAGACAAAGCATGCGA-1 13 11606995 G A - 1 1 G>A C>T +AAGACTCCACATACTG-1_5_146261113_T_C_+ AAGACTCCACATACTG-1 5 146261113 T C + 1 1 T>C T>C +AAAGAACCAGCAAGAC-1_9_3014257_C_A_- AAAGAACCAGCAAGAC-1 9 3014257 C A - 1 1 C>A G>T +AACAAAGAGGCATCAG-1_2_98662904_G_C_+ AACAAAGAGGCATCAG-1 2 98662904 G C + 1 1 G>C G>C +AACAACCAGTAATACG-1_3_117321503_G_T_- AACAACCAGTAATACG-1 3 117321503 G T - 1 1 G>T C>A +AAACCCACAATCTCTT-1_14_26413273_C_A_- AAACCCACAATCTCTT-1 14 26413273 C A - 1 1 C>A G>T +AACTTCTAGGGATCTG-1_7_91232069_T_C_+ AACTTCTAGGGATCTG-1 7 91232069 T C + 1 1 T>C T>C +AACGGGAAGTCCCTAA-1_5_146261076_T_C_+ AACGGGAAGTCCCTAA-1 5 146261076 T C + 1 1 T>C T>C +AAAGGATAGGTTCCAT-1_6_55678282_G_A_- AAAGGATAGGTTCCAT-1 6 55678282 G A - 1 1 G>A C>T +AAGACAAAGAAGGGAT-1_4_4133595_G_A_- AAGACAAAGAAGGGAT-1 4 4133595 G A - 1 1 G>A C>T +AACCTTTAGGGTATAT-1_15_98737727_A_T_- AACCTTTAGGGTATAT-1 15 98737727 A T - 1 1 A>T T>A +AAACGCTCATCAACCA-1_1_126375321_A_C_- AAACGCTCATCAACCA-1 1 126375321 A C - 1 1 A>C T>G +AAAGTCCGTGAGTAAT-1_8_72406876_T_G_- AAAGTCCGTGAGTAAT-1 8 72406876 T G - 1 1 T>G A>C +AAAGGGCTCTGCTAGA-1_11_94093392_A_T_+ AAAGGGCTCTGCTAGA-1 11 94093392 A T + 1 1 A>T A>T +AAAGGATAGGTTCCAT-1_17_39847458_A_G_- AAAGGATAGGTTCCAT-1 17 39847458 A G - 1 1 A>G T>C +AACAAAGGTCCCGCAA-1_5_146261004_G_C_+ AACAAAGGTCCCGCAA-1 5 146261004 G C + 1 1 G>C G>C +AACCTGACAAGTGACG-1_5_123457888_C_T_+ AACCTGACAAGTGACG-1 5 123457888 C T + 1 1 C>T C>T +AAACGAAAGGTAGTCG-1_15_36771914_C_A_- AAACGAAAGGTAGTCG-1 15 36771914 C A - 1 1 C>A G>T +AACAACCGTCTCAGAT-1_3_136935349_C_T_+ AACAACCGTCTCAGAT-1 3 136935349 C T + 1 1 C>T C>T +AAAGGTATCCCTCTCC-1_9_3004619_A_C_- AAAGGTATCCCTCTCC-1 9 3004619 A C - 1 1 A>C T>G +AACAAGACATCCGTTC-1_3_28665788_C_G_+ AACAAGACATCCGTTC-1 3 28665788 C G + 1 1 C>G C>G +AAGACTCAGAGGGTCT-1_5_25814560_T_C_+ AAGACTCAGAGGGTCT-1 5 25814560 T C + 1 1 T>C T>C +AAACGCTGTCATGGCC-1_7_30617071_G_A_- AAACGCTGTCATGGCC-1 7 30617071 G A - 1 1 G>A C>T +AAATGGAAGTCGGCCT-1_5_146261080_C_A_+ AAATGGAAGTCGGCCT-1 5 146261080 C A + 1 1 C>A C>A +AACACACAGTGAGTGC-1_11_77711986_G_A_+ AACACACAGTGAGTGC-1 11 77711986 G A + 1 1 G>A G>A +AACTTCTCACAACGTT-1_9_3014089_C_G_- AACTTCTCACAACGTT-1 9 3014089 C G - 1 1 C>G G>C +AAATGGAGTAGCGCCT-1_17_39847331_A_T_- AAATGGAGTAGCGCCT-1 17 39847331 A T - 1 1 A>T T>A +AAAGTCCCACAAATGA-1_9_107614371_A_G_- AAAGTCCCACAAATGA-1 9 107614371 A G - 1 1 A>G T>C +AACTTCTCATGAATAG-1_5_32492752_T_A_+ AACTTCTCATGAATAG-1 5 32492752 T A + 1 1 T>A T>A +AACGTCAAGACTCTTG-1_5_146261106_C_G_+ AACGTCAAGACTCTTG-1 5 146261106 C G + 1 1 C>G C>G +AAACGAAAGGTAGTCG-1_1_153119065_T_A_+ AAACGAAAGGTAGTCG-1 1 153119065 T A + 1 1 T>A T>A +AACGAAACATCTCAAG-1_2_103981553_C_T_+ AACGAAACATCTCAAG-1 2 103981553 C T + 1 1 C>T C>T +AAGACTCGTGGTACAG-1_17_24721010_T_G_+ AAGACTCGTGGTACAG-1 17 24721010 T G + 1 1 T>G T>G +AAAGAACCACAAGCCC-1_9_3035170_C_G_- AAAGAACCACAAGCCC-1 9 3035170 C G - 1 1 C>G G>C +AACACACTCTGCGGAC-1_14_54906893_G_A_- AACACACTCTGCGGAC-1 14 54906893 G A - 1 1 G>A C>T +AAAGTCCAGTATAACG-1_16_57391454_T_C_- AAAGTCCAGTATAACG-1 16 57391454 T C - 1 1 T>C A>G +AAAGGATGTGCTCGTG-1_11_96818883_T_C_- AAAGGATGTGCTCGTG-1 11 96818883 T C - 1 1 T>C A>G +AAAGTGAGTCAAGGCA-1_MT_8397_A_G_+ AAAGTGAGTCAAGGCA-1 MT 8397 A G + 1 2 A>G A>G +AACTTCTCAGAGGACT-1_6_56240589_C_T_- AACTTCTCAGAGGACT-1 6 56240589 C T - 1 1 C>T G>A +AAATGGATCGCCCAGA-1_8_83996285_T_A_+ AAATGGATCGCCCAGA-1 8 83996285 T A + 1 1 T>A T>A +AACCTGATCGCTCATC-1_17_39847403_T_G_+ AACCTGATCGCTCATC-1 17 39847403 T G + 1 1 T>G T>G +AAAGGGCGTTCCAAAC-1_7_87648372_A_G_+ AAAGGGCGTTCCAAAC-1 7 87648372 A G + 1 1 A>G A>G +AAACGAACAAACGGCA-1_2_166946191_G_T_+ AAACGAACAAACGGCA-1 2 166946191 G T + 1 1 G>T G>T +AAGACTCGTCCAGAAG-1_17_29043061_G_A_+ AAGACTCGTCCAGAAG-1 17 29043061 G A + 1 1 G>A G>A +AAAGGGCAGTAAGCAT-1_X_150524821_C_T_- AAAGGGCAGTAAGCAT-1 X 150524821 C T - 1 1 C>T G>A +AACCTGATCTTCGTGC-1_7_75149066_A_G_- AACCTGATCTTCGTGC-1 7 75149066 A G - 1 1 A>G T>C +AAATGGATCCCTTGTG-1_9_41968481_G_T_- AAATGGATCCCTTGTG-1 9 41968481 G T - 1 1 G>T C>A +AACTTCTAGCAGATAT-1_8_83939683_C_T_+ AACTTCTAGCAGATAT-1 8 83939683 C T + 1 1 C>T C>T +AAACGAAAGGTAGTCG-1_14_54897818_A_G_+ AAACGAAAGGTAGTCG-1 14 54897818 A G + 1 1 A>G A>G +AACGTCACACTCCTTG-1_9_100535129_T_C_- AACGTCACACTCCTTG-1 9 100535129 T C - 1 1 T>C A>G +AACACACTCGTAGCCG-1_17_39847403_T_G_- AACACACTCGTAGCCG-1 17 39847403 T G - 1 3 T>G A>C +AACACACTCTGCGGGT-1_X_167207095_A_G_- AACACACTCTGCGGGT-1 X 167207095 A G - 1 1 A>G T>C +AACTTCTCATGAATAG-1_9_3004743_C_G_- AACTTCTCATGAATAG-1 9 3004743 C G - 1 1 C>G G>C +AAATGGAAGTAGCTCT-1_7_59982597_C_G_- AAATGGAAGTAGCTCT-1 7 59982597 C G - 1 1 C>G G>C +AACACACTCTGCGGGT-1_1_63578223_C_T_+ AACACACTCTGCGGGT-1 1 63578223 C T + 1 1 C>T C>T +AAAGTGAAGGCATCGA-1_17_24685676_G_A_- AAAGTGAAGGCATCGA-1 17 24685676 G A - 1 1 G>A C>T +AACGTCAAGACTCTTG-1_5_146261113_T_C_+ AACGTCAAGACTCTTG-1 5 146261113 T C + 1 1 T>C T>C +AACCAACAGCTAGAAT-1_14_79288891_G_A_- AACCAACAGCTAGAAT-1 14 79288891 G A - 1 1 G>A C>T +AACAAAGCACGGCACT-1_1_86530439_C_T_+ AACAAAGCACGGCACT-1 1 86530439 C T + 1 1 C>T C>T +AAACGCTCATCAACCA-1_2_24827322_A_G_- AAACGCTCATCAACCA-1 2 24827322 A G - 1 1 A>G T>C +AAAGTCCCACCACATA-1_15_25364387_C_T_- AAAGTCCCACCACATA-1 15 25364387 C T - 1 1 C>T G>A +AAACGCTCAGTAGGAC-1_X_37082620_G_A_- AAACGCTCAGTAGGAC-1 X 37082620 G A - 1 1 G>A C>T +AAATGGAAGCAGATAT-1_17_70767573_A_C_+ AAATGGAAGCAGATAT-1 17 70767573 A C + 1 1 A>C A>C +AAACGCTCAGTAGGAC-1_10_72674756_C_T_+ AAACGCTCAGTAGGAC-1 10 72674756 C T + 1 1 C>T C>T +AACAGGGTCTTCCACG-1_7_97861122_C_T_+ AACAGGGTCTTCCACG-1 7 97861122 C T + 1 1 C>T C>T +AACAAAGGTGTAGTGG-1_19_29388030_A_G_+ AACAAAGGTGTAGTGG-1 19 29388030 A G + 1 1 A>G A>G +AACCTTTAGCGTGCTC-1_17_39848018_C_T_+ AACCTTTAGCGTGCTC-1 17 39848018 C T + 1 1 C>T C>T +AACAAGAGTAGTCTTG-1_6_52766281_T_C_+ AACAAGAGTAGTCTTG-1 6 52766281 T C + 1 1 T>C T>C +AAAGTGATCGTGGGAA-1_17_39848018_C_T_+ AAAGTGATCGTGGGAA-1 17 39848018 C T + 1 1 C>T C>T +AAGAACATCTCCGAAA-1_13_89849170_G_A_- AAGAACATCTCCGAAA-1 13 89849170 G A - 1 1 G>A C>T +AACGTCACACGAGGTA-1_1_118321904_A_T_+ AACGTCACACGAGGTA-1 1 118321904 A T + 1 1 A>T A>T +AACCAACGTCCCTGTT-1_5_146261080_C_A_+ AACCAACGTCCCTGTT-1 5 146261080 C A + 1 1 C>A C>A +AAAGTCCAGTCGGCCT-1_4_41769482_G_A_- AAAGTCCAGTCGGCCT-1 4 41769482 G A - 1 1 G>A C>T +AACAACCAGTAATACG-1_19_5493813_C_T_+ AACAACCAGTAATACG-1 19 5493813 C T + 1 1 C>T C>T +AAAGGTAGTATGCTAC-1_MT_5890_T_A_+ AAAGGTAGTATGCTAC-1 MT 5890 T A + 1 1 T>A T>A +AACAGGGTCTTCCACG-1_10_81204512_C_T_- AACAGGGTCTTCCACG-1 10 81204512 C T - 1 1 C>T G>A +AAAGTCCTCCGATGCG-1_10_9828367_C_T_- AAAGTCCTCCGATGCG-1 10 9828367 C T - 1 1 C>T G>A +AAAGAACTCGTCCTCA-1_3_89782503_C_T_+ AAAGAACTCGTCCTCA-1 3 89782503 C T + 1 1 C>T C>T +AACAAGAGTTCTCAGA-1_17_39847435_A_G_+ AACAAGAGTTCTCAGA-1 17 39847435 A G + 1 1 A>G A>G +AAGAACAAGTCTCTGA-1_10_128624621_G_A_- AAGAACAAGTCTCTGA-1 10 128624621 G A - 1 1 G>A C>T +AACCTGATCTTCGTGC-1_8_8690152_A_C_- AACCTGATCTTCGTGC-1 8 8690152 A C - 1 1 A>C T>G +AAAGTCCCAACCAGAG-1_16_57391683_T_A_- AAAGTCCCAACCAGAG-1 16 57391683 T A - 1 1 T>A A>T +AACTTCTAGCAGATAT-1_14_20704247_A_T_+ AACTTCTAGCAGATAT-1 14 20704247 A T + 1 1 A>T A>T +AACAAGAGTTACCTGA-1_9_3014249_G_A_- AACAAGAGTTACCTGA-1 9 3014249 G A - 1 1 G>A C>T +AACAAGAGTTACCTGA-1_9_3014324_C_A_- AACAAGAGTTACCTGA-1 9 3014324 C A - 1 1 C>A G>T +AAGAACATCATAGGCT-1_9_59679267_C_T_+ AAGAACATCATAGGCT-1 9 59679267 C T + 1 1 C>T C>T +AAACCCATCGGATAAA-1_10_94220920_C_T_+ AAACCCATCGGATAAA-1 10 94220920 C T + 1 1 C>T C>T +AAGACAAAGGGCAGGA-1_5_100083404_T_C_- AAGACAAAGGGCAGGA-1 5 100083404 T C - 1 1 T>C A>G +AAGATAGCACGCGTGT-1_7_126795451_C_T_- AAGATAGCACGCGTGT-1 7 126795451 C T - 1 1 C>T G>A +AAGAACAGTTGCAAGG-1_11_5042494_C_T_+ AAGAACAGTTGCAAGG-1 11 5042494 C T + 1 1 C>T C>T +AAGAACACAAAGGTTA-1_9_70554626_A_G_+ AAGAACACAAAGGTTA-1 9 70554626 A G + 1 1 A>G A>G +AACCCAAGTAGCACGA-1_11_109573489_G_A_- AACCCAAGTAGCACGA-1 11 109573489 G A - 1 1 G>A C>T +AAACGAAGTGGCAGAT-1_2_5379332_A_T_- AAACGAAGTGGCAGAT-1 2 5379332 A T - 1 1 A>T T>A +AACTTCTAGCCTAACT-1_17_81639617_G_C_- AACTTCTAGCCTAACT-1 17 81639617 G C - 1 1 G>C C>G +AAATGGATCTGCGGCA-1_3_87624759_T_A_+ AAATGGATCTGCGGCA-1 3 87624759 T A + 1 1 T>A T>A +AAGACTCCAGAAACCG-1_9_90094448_A_T_+ AAGACTCCAGAAACCG-1 9 90094448 A T + 1 1 A>T A>T +AAGACTCGTCCAGAAG-1_5_122788319_G_T_- AAGACTCGTCCAGAAG-1 5 122788319 G T - 1 1 G>T C>A +AACCAACGTAGGTAGC-1_9_54456594_C_T_- AACCAACGTAGGTAGC-1 9 54456594 C T - 1 1 C>T G>A +AACAAAGTCTTAGCTT-1_2_156723333_A_G_+ AACAAAGTCTTAGCTT-1 2 156723333 A G + 1 1 A>G A>G +AAATGGAAGTTCAACC-1_5_65588906_A_G_- AAATGGAAGTTCAACC-1 5 65588906 A G - 1 1 A>G T>C +AACGGGAAGTTGCCCG-1_4_56957248_G_A_- AACGGGAAGTTGCCCG-1 4 56957248 G A - 1 1 G>A C>T +AAACGCTGTGAGGATC-1_17_39847435_A_G_+ AAACGCTGTGAGGATC-1 17 39847435 A G + 1 1 A>G A>G +AACAAGACATCCGTTC-1_2_128748326_C_T_+ AACAAGACATCCGTTC-1 2 128748326 C T + 1 1 C>T C>T +AACAAGATCTAGGCCG-1_17_39847435_A_G_- AACAAGATCTAGGCCG-1 17 39847435 A G - 1 1 A>G T>C +AAAGGTACAATTGCAC-1_5_71745970_A_T_+ AAAGGTACAATTGCAC-1 5 71745970 A T + 1 1 A>T A>T +AACCTTTCACACCTGG-1_19_10451310_G_C_+ AACCTTTCACACCTGG-1 19 10451310 G C + 1 1 G>C G>C +AAACGAAAGTTCCATG-1_18_60987861_T_C_+ AAACGAAAGTTCCATG-1 18 60987861 T C + 1 1 T>C T>C AACGGGATCAGGAACG-1_19_5802535_G_A_- AACGGGATCAGGAACG-1 19 5802535 G A - 1 1 G>A C>T -AACCAACAGCTACTGT-1_19_47083462_G_C_+ AACCAACAGCTACTGT-1 19 47083462 G C + 1 1 G>C G>C +AAACGCTCAGTAGGAC-1_5_145183865_G_A_- AAACGCTCAGTAGGAC-1 5 145183865 G A - 1 1 G>A C>T +AACGAAAAGTGATAAC-1_11_51600990_A_C_- AACGAAAAGTGATAAC-1 11 51600990 A C - 1 1 A>C T>G +AAACGAAAGGTAGTCG-1_15_36771930_A_T_- AAACGAAAGGTAGTCG-1 15 36771930 A T - 1 1 A>T T>A +AACTTCTCAGGACTTT-1_11_86485267_G_A_+ AACTTCTCAGGACTTT-1 11 86485267 G A + 1 1 G>A G>A +AACCACACAACCAGAG-1_3_94317530_A_G_+ AACCACACAACCAGAG-1 3 94317530 A G + 1 1 A>G A>G +AACAACCAGTTACTCG-1_6_4008180_A_T_+ AACAACCAGTTACTCG-1 6 4008180 A T + 1 1 A>T A>T +AACGGGAGTAGCACGA-1_9_108559871_C_T_+ AACGGGAGTAGCACGA-1 9 108559871 C T + 1 1 C>T C>T +AAATGGAAGCAGATAT-1_19_23165995_C_G_+ AAATGGAAGCAGATAT-1 19 23165995 C G + 1 1 C>G C>G +AACCTTTAGACCATAA-1_5_135867072_G_A_+ AACCTTTAGACCATAA-1 5 135867072 G A + 1 1 G>A G>A +AAACGCTTCGATTCCC-1_9_123461940_T_G_+ AAACGCTTCGATTCCC-1 9 123461940 T G + 1 1 T>G T>G +AAATGGACACCCGTAG-1_7_100814045_T_G_+ AAATGGACACCCGTAG-1 7 100814045 T G + 1 1 T>G T>G +AAAGTCCTCCGATGCG-1_1_6637701_A_G_+ AAAGTCCTCCGATGCG-1 1 6637701 A G + 1 1 A>G A>G +AACGGGAAGAGATGCC-1_5_71967198_G_C_+ AACGGGAAGAGATGCC-1 5 71967198 G C + 1 1 G>C G>C +AAATGGACAAGTGGAC-1_9_3020865_A_G_+ AAATGGACAAGTGGAC-1 9 3020865 A G + 1 1 A>G A>G +AAAGTCCGTGTGGTCC-1_12_119961627_A_G_+ AAAGTCCGTGTGGTCC-1 12 119961627 A G + 1 1 A>G A>G +AACCAACAGTATCTGC-1_16_57391688_T_G_- AACCAACAGTATCTGC-1 16 57391688 T G - 1 1 T>G A>C +AACGTCATCTACTTCA-1_9_3027169_G_T_- AACGTCATCTACTTCA-1 9 3027169 G T - 1 1 G>T C>A +AAACCCAGTACGGGAT-1_17_39847403_T_G_+ AAACCCAGTACGGGAT-1 17 39847403 T G + 1 1 T>G T>G +AAAGTCCTCCGATGCG-1_10_59988611_C_A_- AAAGTCCTCCGATGCG-1 10 59988611 C A - 1 1 C>A G>T +AACACACAGCCGCACT-1_14_12238557_T_A_+ AACACACAGCCGCACT-1 14 12238557 T A + 1 1 T>A T>A +AAACGAACAACTGGTT-1_6_39465537_T_C_- AAACGAACAACTGGTT-1 6 39465537 T C - 1 1 T>C A>G +AAAGTCCCATAACCCA-1_7_15917276_G_A_- AAAGTCCCATAACCCA-1 7 15917276 G A - 1 1 G>A C>T +AAGAACACACAGCCTG-1_11_44454612_G_A_- AAGAACACACAGCCTG-1 11 44454612 G A - 1 1 G>A C>T +AAACGCTCATCAACCA-1_9_56223578_C_T_- AAACGCTCATCAACCA-1 9 56223578 C T - 1 1 C>T G>A +AACCAACTCACCCATC-1_2_48905306_G_A_- AACCAACTCACCCATC-1 2 48905306 G A - 1 1 G>A C>T +AACTTCTAGCAGATAT-1_12_70826760_G_A_+ AACTTCTAGCAGATAT-1 12 70826760 G A + 1 1 G>A G>A +AACCTTTCAGACCTGC-1_5_66974624_C_T_+ AACCTTTCAGACCTGC-1 5 66974624 C T + 1 1 C>T C>T +AAACCCACAATTGCGT-1_15_103230807_C_T_- AAACCCACAATTGCGT-1 15 103230807 C T - 1 1 C>T G>A +AAAGGGCAGACTACCT-1_11_4737029_G_A_- AAAGGGCAGACTACCT-1 11 4737029 G A - 1 1 G>A C>T +AAGAACAGTAAGATAC-1_X_101322637_G_A_+ AAGAACAGTAAGATAC-1 X 101322637 G A + 1 1 G>A G>A +AACAGGGTCTTCCACG-1_2_5379332_A_T_- AACAGGGTCTTCCACG-1 2 5379332 A T - 1 1 A>T T>A +AAAGGTAAGGACAGTC-1_19_9984925_C_T_+ AAAGGTAAGGACAGTC-1 19 9984925 C T + 1 1 C>T C>T +AAAGGATGTTTCGGCG-1_12_108362079_C_T_+ AAAGGATGTTTCGGCG-1 12 108362079 C T + 1 1 C>T C>T +AACCAACTCGATGGAG-1_7_130895419_T_C_- AACCAACTCGATGGAG-1 7 130895419 T C - 1 1 T>C A>G +AACCTTTTCCTAGCGG-1_16_57391683_T_A_- AACCTTTTCCTAGCGG-1 16 57391683 T A - 1 1 T>A A>T +AAGACAAGTAACAGTA-1_MT_7470_T_A_+ AAGACAAGTAACAGTA-1 MT 7470 T A + 1 1 T>A T>A +AACAACCGTATGTCTG-1_2_65710152_T_A_+ AACAACCGTATGTCTG-1 2 65710152 T A + 1 1 T>A T>A +AAACCCACATCACCAA-1_12_99645608_T_C_+ AAACCCACATCACCAA-1 12 99645608 T C + 1 1 T>C T>C +AAAGGATGTGCTCGTG-1_17_39847403_T_G_+ AAAGGATGTGCTCGTG-1 17 39847403 T G + 1 1 T>G T>G +AAACCCAGTCAAATCC-1_13_93487558_G_T_- AAACCCAGTCAAATCC-1 13 93487558 G T - 1 1 G>T C>A +AACCCAAAGCGATCGA-1_10_10551925_C_T_- AACCCAAAGCGATCGA-1 10 10551925 C T - 1 1 C>T G>A +AACACACGTTTGTTCT-1_11_118663037_G_A_- AACACACGTTTGTTCT-1 11 118663037 G A - 1 1 G>A C>T +AAATGGAAGTTCAACC-1_15_93509293_C_T_- AAATGGAAGTTCAACC-1 15 93509293 C T - 1 1 C>T G>A +AAAGTCCCAAACGGCA-1_X_35900981_A_G_+ AAAGTCCCAAACGGCA-1 X 35900981 A G + 1 1 A>G A>G +AACCCAAGTATCGATC-1_17_39847458_A_G_- AACCCAAGTATCGATC-1 17 39847458 A G - 1 1 A>G T>C +AACACACGTGTTGCCG-1_18_60979438_G_A_+ AACACACGTGTTGCCG-1 18 60979438 G A + 1 1 G>A G>A +AAACCCACAGCTAACT-1_12_79156321_T_C_- AAACCCACAGCTAACT-1 12 79156321 T C - 1 1 T>C A>G +AACCACAGTCTACAAC-1_11_36676526_G_A_- AACCACAGTCTACAAC-1 11 36676526 G A - 1 1 G>A C>T +AAACGAAGTGTAACGG-1_16_67488059_T_C_- AAACGAAGTGTAACGG-1 16 67488059 T C - 1 1 T>C A>G +AAAGGTAAGGACAGTC-1_16_35313557_G_A_- AAAGGTAAGGACAGTC-1 16 35313557 G A - 1 1 G>A C>T +AAGACAAAGAGTTCGG-1_10_76515810_T_C_+ AAGACAAAGAGTTCGG-1 10 76515810 T C + 1 1 T>C T>C +AAGAACAGTCCTGGTG-1_13_74032207_C_T_+ AAGAACAGTCCTGGTG-1 13 74032207 C T + 1 1 C>T C>T +AAAGTCCTCCGATGCG-1_3_144701047_T_C_- AAAGTCCTCCGATGCG-1 3 144701047 T C - 1 1 T>C A>G +AACGTCACAAGAATGT-1_7_123193752_C_A_+ AACGTCACAAGAATGT-1 7 123193752 C A + 1 1 C>A C>A +AACCACAGTGTTCCTC-1_19_21392331_G_A_- AACCACAGTGTTCCTC-1 19 21392331 G A - 1 1 G>A C>T +AAACGCTGTCAACACT-1_6_97807683_G_T_+ AAACGCTGTCAACACT-1 6 97807683 G T + 1 1 G>T G>T +AAGAACACAACTGATC-1_9_44095410_T_C_+ AAGAACACAACTGATC-1 9 44095410 T C + 1 1 T>C T>C +AACACACAGTGCACAG-1_9_107614328_G_C_- AACACACAGTGCACAG-1 9 107614328 G C - 1 1 G>C C>G +AACGGGAAGTTGCCCG-1_8_61053728_T_C_+ AACGGGAAGTTGCCCG-1 8 61053728 T C + 1 1 T>C T>C +AACCTGACATGAGATA-1_17_39847052_A_G_+ AACCTGACATGAGATA-1 17 39847052 A G + 1 2 A>G A>G +AAAGGTATCGATTGAC-1_9_3002581_C_T_- AAAGGTATCGATTGAC-1 9 3002581 C T - 1 1 C>T G>A +AAACGAAGTGCTCTCT-1_17_56606020_T_C_+ AAACGAAGTGCTCTCT-1 17 56606020 T C + 1 1 T>C T>C +AACAACCCACACACGC-1_11_73181808_A_G_+ AACAACCCACACACGC-1 11 73181808 A G + 1 1 A>G A>G +AAACGAAAGTCGCGAA-1_1_116303028_G_A_+ AAACGAAAGTCGCGAA-1 1 116303028 G A + 1 1 G>A G>A +AAACGAAAGGTAGTCG-1_9_40805126_A_G_+ AAACGAAAGGTAGTCG-1 9 40805126 A G + 1 1 A>G A>G +AACCTGACAATAGTAG-1_10_60666635_C_G_- AACCTGACAATAGTAG-1 10 60666635 C G - 1 1 C>G G>C +AACGGGAGTCAGGCAA-1_17_7930895_A_T_- AACGGGAGTCAGGCAA-1 17 7930895 A T - 1 1 A>T T>A +AAACCCACATATCTCT-1_5_146261113_T_C_+ AAACCCACATATCTCT-1 5 146261113 T C + 1 1 T>C T>C +AAGATAGGTCATCAGT-1_13_59634598_C_A_+ AAGATAGGTCATCAGT-1 13 59634598 C A + 1 1 C>A C>A +AACCACAGTTAGAGTA-1_17_39847022_C_T_+ AACCACAGTTAGAGTA-1 17 39847022 C T + 1 1 C>T C>T +AACCACACAACAACAA-1_17_39847554_A_T_+ AACCACACAACAACAA-1 17 39847554 A T + 1 1 A>T A>T +AAACGCTGTCTGTTAG-1_4_52475029_C_T_+ AAACGCTGTCTGTTAG-1 4 52475029 C T + 1 1 C>T C>T +AAAGGATAGTCCTGTA-1_17_39848018_C_T_+ AAAGGATAGTCCTGTA-1 17 39848018 C T + 1 1 C>T C>T +AACCTGAAGTCCCAGC-1_12_72211867_G_A_- AACCTGAAGTCCCAGC-1 12 72211867 G A - 1 1 G>A C>T +AACGTCACACGAGGTA-1_9_78478613_G_C_- AACGTCACACGAGGTA-1 9 78478613 G C - 1 1 G>C C>G +AAACGCTCAGTAGGAC-1_17_24721073_T_C_+ AAACGCTCAGTAGGAC-1 17 24721073 T C + 1 1 T>C T>C +AACTTCTCAGGACTTT-1_4_101625985_T_A_+ AACTTCTCAGGACTTT-1 4 101625985 T A + 1 1 T>A T>A +AAACGCTAGGTAGGCT-1_7_109034266_C_T_+ AAACGCTAGGTAGGCT-1 7 109034266 C T + 1 1 C>T C>T +AACCAACAGAGGACTC-1_10_83722962_G_T_+ AACCAACAGAGGACTC-1 10 83722962 G T + 1 1 G>T G>T +AACCATGCATAATCGC-1_17_39848018_C_T_+ AACCATGCATAATCGC-1 17 39848018 C T + 2 2 C>T C>T +AACCACAGTACTCGTA-1_17_39848051_T_C_+ AACCACAGTACTCGTA-1 17 39848051 T C + 1 1 T>C T>C +AAAGGGCCAGCGCTTG-1_4_41191271_A_C_+ AAAGGGCCAGCGCTTG-1 4 41191271 A C + 1 1 A>C A>C +AACCATGTCATCGCTC-1_10_128401680_C_G_- AACCATGTCATCGCTC-1 10 128401680 C G - 1 1 C>G G>C +AACAACCCAGCACAGA-1_2_158437264_C_T_+ AACAACCCAGCACAGA-1 2 158437264 C T + 1 1 C>T C>T +AAAGAACAGAAACTAC-1_17_39847258_T_C_- AAAGAACAGAAACTAC-1 17 39847258 T C - 1 1 T>C A>G +AAATGGAGTGAGTAGC-1_17_39847290_C_T_+ AAATGGAGTGAGTAGC-1 17 39847290 C T + 1 1 C>T C>T +AAAGGTACACAGTCAT-1_12_44311884_G_A_+ AAAGGTACACAGTCAT-1 12 44311884 G A + 1 1 G>A G>A +AACCTTTCATTGAAAG-1_8_46207433_A_C_- AACCTTTCATTGAAAG-1 8 46207433 A C - 1 1 A>C T>G +AACCATGCAGAGTTCT-1_16_57391685_G_A_- AACCATGCAGAGTTCT-1 16 57391685 G A - 1 1 G>A C>T +AACCATGGTCTACAAC-1_15_35935326_C_G_- AACCATGGTCTACAAC-1 15 35935326 C G - 1 1 C>G G>C +AAAGGGCTCTCACTCG-1_10_100070561_G_A_+ AAAGGGCTCTCACTCG-1 10 100070561 G A + 1 1 G>A G>A +AACAACCAGTTACTCG-1_3_89249598_C_T_+ AACAACCAGTTACTCG-1 3 89249598 C T + 1 1 C>T C>T +AAACGCTCAGTAGGAC-1_11_30099590_G_A_- AAACGCTCAGTAGGAC-1 11 30099590 G A - 1 1 G>A C>T +AAGACTCGTGGTACAG-1_3_40790261_C_T_+ AAGACTCGTGGTACAG-1 3 40790261 C T + 1 1 C>T C>T +AACCAACGTACATACC-1_5_23464748_C_A_+ AACCAACGTACATACC-1 5 23464748 C A + 1 1 C>A C>A +AAAGAACCAACTTCTT-1_2_144142629_A_G_- AAAGAACCAACTTCTT-1 2 144142629 A G - 1 1 A>G T>C +AAGACAAAGGGCAGGA-1_17_34613270_T_C_+ AAGACAAAGGGCAGGA-1 17 34613270 T C + 1 1 T>C T>C +AACGTCATCTGGCTGG-1_11_98764296_G_T_+ AACGTCATCTGGCTGG-1 11 98764296 G T + 1 1 G>T G>T +AAACGCTAGTAGCATA-1_5_29675809_A_G_+ AAACGCTAGTAGCATA-1 5 29675809 A G + 1 1 A>G A>G +AACCTGATCGCTCATC-1_MT_9598_C_T_+ AACCTGATCGCTCATC-1 MT 9598 C T + 1 1 C>T C>T +AAACCCACAGTTCTAG-1_13_25252185_G_A_- AAACCCACAGTTCTAG-1 13 25252185 G A - 1 1 G>A C>T +AAATGGAGTGAGTAGC-1_1_184819291_C_T_- AAATGGAGTGAGTAGC-1 1 184819291 C T - 1 1 C>T G>A +AACCAACTCCGTAATG-1_17_39848018_C_T_+ AACCAACTCCGTAATG-1 17 39848018 C T + 1 1 C>T C>T +AACAACCAGACGACTG-1_9_70554625_T_G_+ AACAACCAGACGACTG-1 9 70554625 T G + 1 1 T>G T>G +AAAGTCCCACAGTATC-1_17_56613916_A_G_+ AAAGTCCCACAGTATC-1 17 56613916 A G + 1 1 A>G A>G +AAAGGATGTACAACGG-1_13_43398410_G_A_+ AAAGGATGTACAACGG-1 13 43398410 G A + 1 1 G>A G>A +AAAGTGATCTCGGCTT-1_10_81404853_A_C_- AAAGTGATCTCGGCTT-1 10 81404853 A C - 1 1 A>C T>G +AACCAACCAGATCCAT-1_15_98803998_G_A_- AACCAACCAGATCCAT-1 15 98803998 G A - 1 1 G>A C>T +AACCACATCCTAGCTC-1_2_136782264_C_T_+ AACCACATCCTAGCTC-1 2 136782264 C T + 1 1 C>T C>T +AAAGGTACAGGACAGT-1_1_165478256_A_G_+ AAAGGTACAGGACAGT-1 1 165478256 A G + 1 1 A>G A>G +AACTTCTAGCTCAGAG-1_17_39848100_A_T_+ AACTTCTAGCTCAGAG-1 17 39848100 A T + 1 1 A>T A>T +AAGACTCCAGAAACCG-1_9_123462100_A_T_+ AAGACTCCAGAAACCG-1 9 123462100 A T + 1 1 A>T A>T +AACAACCAGTTACTCG-1_2_55596730_T_C_+ AACAACCAGTTACTCG-1 2 55596730 T C + 1 1 T>C T>C +AACGTCACATAGATGA-1_9_123461940_T_G_+ AACGTCACATAGATGA-1 9 123461940 T G + 1 1 T>G T>G +AAACCCAGTCAAATCC-1_13_93487557_T_C_- AAACCCAGTCAAATCC-1 13 93487557 T C - 1 1 T>C A>G +AACCAACTCGATGGAG-1_13_89296294_T_G_+ AACCAACTCGATGGAG-1 13 89296294 T G + 1 1 T>G T>G +AAAGGGCGTGGTCTTA-1_14_64588915_T_A_+ AAAGGGCGTGGTCTTA-1 14 64588915 T A + 1 1 T>A T>A +AACGTCATCTGGCTGG-1_7_105557956_G_A_+ AACGTCATCTGGCTGG-1 7 105557956 G A + 1 1 G>A G>A +AAAGTCCAGTCGGCCT-1_6_115276353_C_T_+ AAAGTCCAGTCGGCCT-1 6 115276353 C T + 1 1 C>T C>T +AACCTGACAGCTGTCG-1_8_57456385_A_C_+ AACCTGACAGCTGTCG-1 8 57456385 A C + 1 1 A>C A>C +AACAAGAAGGTTCAGG-1_5_146261106_C_G_+ AACAAGAAGGTTCAGG-1 5 146261106 C G + 1 1 C>G C>G +AAACCCACATCACCAA-1_17_39847458_A_G_+ AAACCCACATCACCAA-1 17 39847458 A G + 1 1 A>G A>G +AAATGGACAACTTGGT-1_10_128548149_T_A_- AAATGGACAACTTGGT-1 10 128548149 T A - 1 1 T>A A>T +AACAGGGTCGGTCGGT-1_17_39848018_C_T_+ AACAGGGTCGGTCGGT-1 17 39848018 C T + 1 1 C>T C>T +AAAGAACTCGTCCTCA-1_3_89782499_C_T_+ AAAGAACTCGTCCTCA-1 3 89782499 C T + 1 1 C>T C>T +AACCAACTCGATGGAG-1_1_39943182_G_A_+ AACCAACTCGATGGAG-1 1 39943182 G A + 1 1 G>A G>A +AAAGAACCAGGTCAGA-1_11_87589810_G_A_+ AAAGAACCAGGTCAGA-1 11 87589810 G A + 1 1 G>A G>A +AACCTTTCAGACCTGC-1_2_32308622_A_C_- AACCTTTCAGACCTGC-1 2 32308622 A C - 1 1 A>C T>G +AAACGCTGTCTGTTAG-1_17_39847403_T_G_+ AAACGCTGTCTGTTAG-1 17 39847403 T G + 1 1 T>G T>G +AAACCCACAGCTAACT-1_19_9984937_A_G_+ AAACCCACAGCTAACT-1 19 9984937 A G + 1 1 A>G A>G +AAGACTCTCATTGGTG-1_9_3035853_T_A_- AAGACTCTCATTGGTG-1 9 3035853 T A - 1 1 T>A A>T +AACCACAGTCTACAAC-1_17_56613447_A_G_+ AACCACAGTCTACAAC-1 17 56613447 A G + 1 1 A>G A>G +AACCATGAGCGTCGAA-1_X_48594130_C_T_- AACCATGAGCGTCGAA-1 X 48594130 C T - 1 1 C>T G>A +AAAGGGCTCTCACTCG-1_11_3517623_G_T_- AAAGGGCTCTCACTCG-1 11 3517623 G T - 1 1 G>T C>A +AAAGAACTCGTCCTCA-1_3_89782492_C_T_+ AAAGAACTCGTCCTCA-1 3 89782492 C T + 1 1 C>T C>T +AAAGTCCTCCGATGCG-1_11_29707146_T_A_+ AAAGTCCTCCGATGCG-1 11 29707146 T A + 1 1 T>A T>A +AAAGTGAAGGCATCGA-1_16_40320976_A_G_+ AAAGTGAAGGCATCGA-1 16 40320976 A G + 1 1 A>G A>G +AACTTCTCAGAGGACT-1_17_39848018_C_T_+ AACTTCTCAGAGGACT-1 17 39848018 C T + 1 1 C>T C>T +AACCAACAGCTACTGT-1_17_90912458_T_G_- AACCAACAGCTACTGT-1 17 90912458 T G - 1 1 T>G A>C +AAAGAACTCGGCTTCT-1_4_116067158_G_A_- AAAGAACTCGGCTTCT-1 4 116067158 G A - 1 1 G>A C>T +AAACCCATCGGATAAA-1_18_22694681_T_C_- AAACCCATCGGATAAA-1 18 22694681 T C - 1 1 T>C A>G +AACAACCAGTAATACG-1_12_74298456_T_C_+ AACAACCAGTAATACG-1 12 74298456 T C + 1 1 T>C T>C +AAAGGATAGCCGCTTG-1_5_14599107_A_T_+ AAAGGATAGCCGCTTG-1 5 14599107 A T + 1 1 A>T A>T +AACAGGGTCTTCCACG-1_11_82764595_A_T_+ AACAGGGTCTTCCACG-1 11 82764595 A T + 1 1 A>T A>T +AAACCCAGTGGTAATA-1_17_39847513_T_G_- AAACCCAGTGGTAATA-1 17 39847513 T G - 1 1 T>G A>C +AACCTGACATCGTCCT-1_15_43527619_C_T_+ AACCTGACATCGTCCT-1 15 43527619 C T + 1 1 C>T C>T +AAAGAACCAAATTAGG-1_15_95216242_G_A_- AAAGAACCAAATTAGG-1 15 95216242 G A - 1 1 G>A C>T +AAACCCAAGATTGCGG-1_13_86045743_T_C_- AAACCCAAGATTGCGG-1 13 86045743 T C - 1 1 T>C A>G +AACCACAAGCTTTGTG-1_4_117154728_G_A_- AACCACAAGCTTTGTG-1 4 117154728 G A - 1 1 G>A C>T +AAGACAAAGGATACCG-1_7_105804022_A_C_- AAGACAAAGGATACCG-1 7 105804022 A C - 1 1 A>C T>G +AAAGGTACACCGTGCA-1_3_158178800_A_C_- AAAGGTACACCGTGCA-1 3 158178800 A C - 1 1 A>C T>G +AAACGCTTCCATAGAC-1_16_57391454_T_C_- AAACGCTTCCATAGAC-1 16 57391454 T C - 1 1 T>C A>G +AACAAGAAGTAAACTG-1_19_5802635_T_A_- AACAAGAAGTAAACTG-1 19 5802635 T A - 1 2 T>A A>T +AACGTCACATGAATCC-1_7_58680873_C_A_+ AACGTCACATGAATCC-1 7 58680873 C A + 1 1 C>A C>A +AAACGCTCAGTAGGAC-1_17_87433583_G_A_- AAACGCTCAGTAGGAC-1 17 87433583 G A - 1 1 G>A C>T +AAAGGTAAGACTTCAC-1_1_170142036_A_T_- AAAGGTAAGACTTCAC-1 1 170142036 A T - 1 1 A>T T>A +AACCTTTCACCAGCCA-1_11_50294700_G_A_- AACCTTTCACCAGCCA-1 11 50294700 G A - 1 1 G>A C>T +AAGACAATCGAGCTGC-1_14_31373782_C_T_- AAGACAATCGAGCTGC-1 14 31373782 C T - 1 1 C>T G>A +AACCACAAGGACAGCT-1_4_141858512_G_A_- AACCACAAGGACAGCT-1 4 141858512 G A - 1 1 G>A C>T +AACAACCGTTTCACAG-1_5_121814722_T_A_+ AACAACCGTTTCACAG-1 5 121814722 T A + 1 1 T>A T>A +AACTTCTCAGGACTTT-1_18_40205747_A_T_- AACTTCTCAGGACTTT-1 18 40205747 A T - 1 1 A>T T>A +AAGAACAAGAAGGGAT-1_11_74641323_C_T_+ AAGAACAAGAAGGGAT-1 11 74641323 C T + 1 1 C>T C>T +AACACACGTTTGTTCT-1_6_86404624_C_T_+ AACACACGTTTGTTCT-1 6 86404624 C T + 1 1 C>T C>T +AACCATGGTCATACCA-1_10_81151698_G_A_+ AACCATGGTCATACCA-1 10 81151698 G A + 1 1 G>A G>A +AACAAAGTCGTCGGGT-1_17_39847435_A_G_+ AACAAAGTCGTCGGGT-1 17 39847435 A G + 1 1 A>G A>G +AAAGAACTCGTCCTCA-1_8_126395331_C_T_+ AAAGAACTCGTCCTCA-1 8 126395331 C T + 1 1 C>T C>T +AACCAACGTGATACAA-1_17_39848018_C_T_+ AACCAACGTGATACAA-1 17 39848018 C T + 1 1 C>T C>T +AAACCCACAATCTCTT-1_14_39449162_C_T_- AAACCCACAATCTCTT-1 14 39449162 C T - 1 1 C>T G>A +AAACGAAAGGTAGTCG-1_6_47796172_A_T_- AAACGAAAGGTAGTCG-1 6 47796172 A T - 1 1 A>T T>A +AAAGGATAGTTCCGGC-1_X_13285635_A_T_+ AAAGGATAGTTCCGGC-1 X 13285635 A T + 1 1 A>T A>T +AAATGGACACCCGTAG-1_13_10333916_G_A_- AAATGGACACCCGTAG-1 13 10333916 G A - 1 1 G>A C>T +AAAGTCCTCCGATGCG-1_7_30435192_G_A_- AAAGTCCTCCGATGCG-1 7 30435192 G A - 1 1 G>A C>T +AAACGCTTCTGCTTAT-1_17_39848018_C_T_+ AAACGCTTCTGCTTAT-1 17 39848018 C T + 1 1 C>T C>T +AACAAGAAGTAAACTG-1_6_51465113_C_T_- AACAAGAAGTAAACTG-1 6 51465113 C T - 1 1 C>T G>A +AACTTCTCACAACGTT-1_2_164508246_G_T_+ AACTTCTCACAACGTT-1 2 164508246 G T + 1 1 G>T G>T +AAATGGATCGCCCAGA-1_19_9984670_C_T_+ AAATGGATCGCCCAGA-1 19 9984670 C T + 1 1 C>T C>T +AACGTCATCTGGCTGG-1_10_128090200_C_T_+ AACGTCATCTGGCTGG-1 10 128090200 C T + 1 1 C>T C>T +AAGAACAGTTGGAGGT-1_2_180258410_T_C_+ AAGAACAGTTGGAGGT-1 2 180258410 T C + 1 1 T>C T>C +AACAACCCACACACGC-1_4_109468042_T_C_- AACAACCCACACACGC-1 4 109468042 T C - 1 1 T>C A>G +AAGATAGAGGGTACGT-1_9_3025549_C_T_- AAGATAGAGGGTACGT-1 9 3025549 C T - 1 1 C>T G>A +AAAGTCCAGTCTGGTT-1_11_102887425_T_G_- AAAGTCCAGTCTGGTT-1 11 102887425 T G - 1 1 T>G A>C +AAACGCTTCAGCAGAG-1_X_41628325_A_G_+ AAACGCTTCAGCAGAG-1 X 41628325 A G + 1 1 A>G A>G +AACGTCATCTGGCTGG-1_2_32633737_G_C_+ AACGTCATCTGGCTGG-1 2 32633737 G C + 1 1 G>C G>C +AAACGAAGTTCATCTT-1_7_135098772_C_A_+ AAACGAAGTTCATCTT-1 7 135098772 C A + 1 1 C>A C>A +AAGACAATCTTAGGAC-1_18_80222354_C_A_+ AAGACAATCTTAGGAC-1 18 80222354 C A + 1 1 C>A C>A +AAAGTCCTCACGATAC-1_7_141493336_C_T_- AAAGTCCTCACGATAC-1 7 141493336 C T - 1 1 C>T G>A +AACCTTTCAGACCTGC-1_12_109545112_C_T_+ AACCTTTCAGACCTGC-1 12 109545112 C T + 1 1 C>T C>T +AACAAAGCATGAGGGT-1_7_99345641_A_C_- AACAAAGCATGAGGGT-1 7 99345641 A C - 1 1 A>C T>G +AACAAGATCTAGGCCG-1_9_3035213_T_G_- AACAAGATCTAGGCCG-1 9 3035213 T G - 1 1 T>G A>C +AACCTTTAGACCAGAC-1_2_134597506_T_G_- AACCTTTAGACCAGAC-1 2 134597506 T G - 1 1 T>G A>C +AACAACCAGACGACTG-1_17_39847197_G_T_+ AACAACCAGACGACTG-1 17 39847197 G T + 1 1 G>T G>T +AAACGCTGTAGAGGAA-1_17_64311314_G_A_- AAACGCTGTAGAGGAA-1 17 64311314 G A - 1 1 G>A C>T +AAACGCTGTCATGGCC-1_1_22705180_T_C_- AAACGCTGTCATGGCC-1 1 22705180 T C - 1 1 T>C A>G +AACGTCAAGCGAGGAG-1_9_70554626_A_G_+ AACGTCAAGCGAGGAG-1 9 70554626 A G + 1 1 A>G A>G +AAGATAGGTCTCACAA-1_16_57391680_C_T_- AAGATAGGTCTCACAA-1 16 57391680 C T - 1 1 C>T G>A +AACCTGAGTCTGTAGT-1_16_23334615_G_C_+ AACCTGAGTCTGTAGT-1 16 23334615 G C + 1 1 G>C G>C +AAAGTGACACCAGCTG-1_2_5379332_A_T_- AAAGTGACACCAGCTG-1 2 5379332 A T - 1 1 A>T T>A +AACCCAAAGTTCTACG-1_4_98079678_G_A_+ AACCCAAAGTTCTACG-1 4 98079678 G A + 1 1 G>A G>A +AAATGGAGTACTCGAT-1_9_3035193_C_A_- AAATGGAGTACTCGAT-1 9 3035193 C A - 1 1 C>A G>T +AACCCAAGTCATAACC-1_7_28376780_A_T_- AACCCAAGTCATAACC-1 7 28376780 A T - 1 1 A>T T>A +AACCACAGTCGTGATT-1_10_80704709_G_A_+ AACCACAGTCGTGATT-1 10 80704709 G A + 1 1 G>A G>A +AAAGGTACAAATACAG-1_7_16961176_C_A_+ AAAGGTACAAATACAG-1 7 16961176 C A + 1 1 C>A C>A +AACGAAATCCTGTAAG-1_2_174346443_C_T_+ AACGAAATCCTGTAAG-1 2 174346443 C T + 1 1 C>T C>T +AACCTGAGTCTGTAGT-1_16_23334604_G_C_+ AACCTGAGTCTGTAGT-1 16 23334604 G C + 1 1 G>C G>C +AAGACTCAGTAACCTC-1_16_57391454_T_C_- AAGACTCAGTAACCTC-1 16 57391454 T C - 1 1 T>C A>G +AAATGGAAGTTCAACC-1_15_93509297_C_T_- AAATGGAAGTTCAACC-1 15 93509297 C T - 1 1 C>T G>A +AAATGGAGTACCGGAA-1_9_75608266_A_T_- AAATGGAGTACCGGAA-1 9 75608266 A T - 1 1 A>T T>A +AACAAGACATCCGTTC-1_12_53272986_T_G_+ AACAAGACATCCGTTC-1 12 53272986 T G + 1 1 T>G T>G +AACCTTTCACACCTGG-1_4_138457006_T_A_+ AACCTTTCACACCTGG-1 4 138457006 T A + 1 1 T>A T>A +AACCTTTAGGAGAGTA-1_14_45629366_C_T_- AACCTTTAGGAGAGTA-1 14 45629366 C T - 1 1 C>T G>A +AACGAAATCGATCCCT-1_9_37544533_G_A_- AACGAAATCGATCCCT-1 9 37544533 G A - 1 1 G>A C>T +AAAGTCCAGTCGGCCT-1_4_41769522_G_A_- AAAGTCCAGTCGGCCT-1 4 41769522 G A - 1 1 G>A C>T +AAACCCATCATCTCTA-1_6_54041963_C_T_+ AAACCCATCATCTCTA-1 6 54041963 C T + 1 1 C>T C>T +AACACACAGTGCACAG-1_15_18862546_C_T_+ AACACACAGTGCACAG-1 15 18862546 C T + 1 1 C>T C>T +AACAACCCAGGAACCA-1_12_73168118_A_G_+ AACAACCCAGGAACCA-1 12 73168118 A G + 1 1 A>G A>G +AACAAAGCACAGTATC-1_4_124849509_A_T_- AACAAAGCACAGTATC-1 4 124849509 A T - 1 1 A>T T>A +AACCTTTGTCTCAGGC-1_11_101190341_C_T_+ AACCTTTGTCTCAGGC-1 11 101190341 C T + 1 1 C>T C>T +AACAAAGGTCCCGCAA-1_11_31935484_C_T_+ AACAAAGGTCCCGCAA-1 11 31935484 C T + 1 1 C>T C>T +AAACCCACATATCTGG-1_11_72451234_G_A_+ AAACCCACATATCTGG-1 11 72451234 G A + 1 1 G>A G>A +AACAAGACAACACTAC-1_1_180802723_G_A_- AACAAGACAACACTAC-1 1 180802723 G A - 1 1 G>A C>T +AACTTCTAGAGTCCGA-1_16_20403889_G_A_- AACTTCTAGAGTCCGA-1 16 20403889 G A - 1 1 G>A C>T +AAAGAACAGTCCCGGT-1_12_72211900_G_A_- AAAGAACAGTCCCGGT-1 12 72211900 G A - 1 1 G>A C>T +AACAACCCAGGAACCA-1_5_104518433_G_A_+ AACAACCCAGGAACCA-1 5 104518433 G A + 1 1 G>A G>A +AACGGGAAGCATACTC-1_5_146261122_A_G_+ AACGGGAAGCATACTC-1 5 146261122 A G + 1 1 A>G A>G +AAATGGATCGCCCAGA-1_4_107200933_C_T_+ AAATGGATCGCCCAGA-1 4 107200933 C T + 1 1 C>T C>T +AACCACAAGTGGACTG-1_9_3000527_T_C_- AACCACAAGTGGACTG-1 9 3000527 T C - 1 1 T>C A>G +AAAGAACAGGGTATAT-1_17_39848018_C_T_+ AAAGAACAGGGTATAT-1 17 39848018 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_5_65389086_G_A_- AACCACAAGCTTTGTG-1 5 65389086 G A - 1 2 G>A C>T +AACCACAAGCTTTGTG-1_6_39140108_G_A_- AACCACAAGCTTTGTG-1 6 39140108 G A - 1 1 G>A C>T +AACTTCTAGAACAGGA-1_8_13567322_A_G_- AACTTCTAGAACAGGA-1 8 13567322 A G - 1 1 A>G T>C +AACCAACCAGTCGCTG-1_X_20699472_C_T_+ AACCAACCAGTCGCTG-1 X 20699472 C T + 1 1 C>T C>T +AACCAACAGCTAAATG-1_13_90924691_C_T_+ AACCAACAGCTAAATG-1 13 90924691 C T + 1 1 C>T C>T +AACCTGACATGAGATA-1_18_69625502_G_A_+ AACCTGACATGAGATA-1 18 69625502 G A + 1 1 G>A G>A +AAGACAAAGCGCCTTG-1_3_122925537_C_T_+ AAGACAAAGCGCCTTG-1 3 122925537 C T + 1 1 C>T C>T +AACCTTTCACACCTGG-1_2_90890420_C_T_+ AACCTTTCACACCTGG-1 2 90890420 C T + 1 1 C>T C>T +AAATGGAAGCAGATAT-1_1_52163592_G_A_- AAATGGAAGCAGATAT-1 1 52163592 G A - 1 1 G>A C>T +AAGAACAGTTGGAGGT-1_15_76906135_C_T_+ AAGAACAGTTGGAGGT-1 15 76906135 C T + 1 1 C>T C>T +AAGACAACACCGCTGA-1_17_89099977_T_A_- AAGACAACACCGCTGA-1 17 89099977 T A - 1 1 T>A A>T +AAGAACATCTCCGAAA-1_19_5801369_A_C_- AAGAACATCTCCGAAA-1 19 5801369 A C - 1 1 A>C T>G +AAGACAAGTACTGACT-1_9_110262347_T_A_+ AAGACAAGTACTGACT-1 9 110262347 T A + 1 1 T>A T>A +AAAGGGCAGTAAGCAT-1_X_150524849_T_C_- AAAGGGCAGTAAGCAT-1 X 150524849 T C - 1 1 T>C A>G +AACAACCAGTAATACG-1_1_182816497_T_G_+ AACAACCAGTAATACG-1 1 182816497 T G + 1 1 T>G T>G +AAACGAAAGGGAGGTG-1_8_72523282_A_G_- AAACGAAAGGGAGGTG-1 8 72523282 A G - 1 1 A>G T>C +AACAAAGAGGTACAGC-1_MT_4761_C_T_+ AACAAAGAGGTACAGC-1 MT 4761 C T + 1 1 C>T C>T +AAAGAACAGGAACATT-1_11_58955489_T_C_+ AAAGAACAGGAACATT-1 11 58955489 T C + 1 1 T>C T>C +AAAGTCCCAGAGGACT-1_7_127893278_G_A_- AAAGTCCCAGAGGACT-1 7 127893278 G A - 1 1 G>A C>T +AACAAAGGTCGCTGCA-1_2_23173284_T_C_+ AACAAAGGTCGCTGCA-1 2 23173284 T C + 1 1 T>C T>C +AAATGGAAGCAGATAT-1_6_32792226_T_G_- AAATGGAAGCAGATAT-1 6 32792226 T G - 1 1 T>G A>C +AACCATGTCATCGCTC-1_1_46852073_G_A_- AACCATGTCATCGCTC-1 1 46852073 G A - 1 1 G>A C>T +AAAGAACTCTCACCCA-1_8_38455658_A_T_- AAAGAACTCTCACCCA-1 8 38455658 A T - 1 1 A>T T>A +AACCACATCCTAGCTC-1_5_104079514_G_A_- AACCACATCCTAGCTC-1 5 104079514 G A - 1 1 G>A C>T +AACCACAAGTTGCCTA-1_1_132583408_G_A_- AACCACAAGTTGCCTA-1 1 132583408 G A - 1 1 G>A C>T +AACCTGAGTCTGTAGT-1_17_39848018_C_T_+ AACCTGAGTCTGTAGT-1 17 39848018 C T + 1 1 C>T C>T +AAACCCAAGATTGCGG-1_8_64592788_G_A_- AAACCCAAGATTGCGG-1 8 64592788 G A - 1 1 G>A C>T +AACCTGACATGAGATA-1_10_106932274_C_T_+ AACCTGACATGAGATA-1 10 106932274 C T + 1 1 C>T C>T +AACCAACTCATAGACC-1_11_20062761_G_A_- AACCAACTCATAGACC-1 11 20062761 G A - 1 1 G>A C>T +AACACACTCTGCGGGT-1_5_124087961_T_C_- AACACACTCTGCGGGT-1 5 124087961 T C - 1 1 T>C A>G +AAACGAAGTGTTTACG-1_19_12776452_T_C_- AAACGAAGTGTTTACG-1 19 12776452 T C - 1 1 T>C A>G +AAAGTCCTCCGATGCG-1_2_156269666_A_G_+ AAAGTCCTCCGATGCG-1 2 156269666 A G + 1 1 A>G A>G +AAACGCTGTAGCTTTG-1_X_75453946_A_G_+ AAACGCTGTAGCTTTG-1 X 75453946 A G + 1 1 A>G A>G +AAAGGTACACCGTGCA-1_9_3000580_T_C_- AAAGGTACACCGTGCA-1 9 3000580 T C - 1 1 T>C A>G +AAAGTCCTCCCAGCGA-1_9_3004607_T_A_- AAAGTCCTCCCAGCGA-1 9 3004607 T A - 1 1 T>A A>T +AACGTCATCTGGCTGG-1_11_98764335_T_G_+ AACGTCATCTGGCTGG-1 11 98764335 T G + 1 1 T>G T>G +AACACACTCGCCTAGG-1_9_3014101_G_T_- AACACACTCGCCTAGG-1 9 3014101 G T - 1 1 G>T C>A +AACCACACAATAGTAG-1_5_146261004_G_C_+ AACCACACAATAGTAG-1 5 146261004 G C + 1 1 G>C G>C +AACGTCACAAACAGGC-1_7_143067780_T_G_+ AACGTCACAAACAGGC-1 7 143067780 T G + 1 1 T>G T>G +AACCAACGTCCCTGTT-1_5_146261004_G_C_+ AACCAACGTCCCTGTT-1 5 146261004 G C + 1 1 G>C G>C +AAAGTGACAAATGGCG-1_7_24981631_G_T_- AAAGTGACAAATGGCG-1 7 24981631 G T - 1 1 G>T C>A +AACCCAACAAGGATGC-1_9_3024479_T_A_- AACCCAACAAGGATGC-1 9 3024479 T A - 1 1 T>A A>T +AAAGGTAGTATGCTAC-1_2_31026343_C_T_- AAAGGTAGTATGCTAC-1 2 31026343 C T - 1 1 C>T G>A +AACCTGACAAGTGACG-1_17_39848052_G_A_+ AACCTGACAAGTGACG-1 17 39848052 G A + 1 1 G>A G>A +AACCACAAGTTGCTCA-1_15_27994123_G_T_- AACCACAAGTTGCTCA-1 15 27994123 G T - 1 1 G>T C>A +AACAGGGTCGGTCGGT-1_17_39847403_T_G_+ AACAGGGTCGGTCGGT-1 17 39847403 T G + 1 1 T>G T>G +AAACGAAGTGTTTACG-1_X_136066699_G_A_- AAACGAAGTGTTTACG-1 X 136066699 G A - 1 1 G>A C>T +AAAGGGCAGCCTTCTC-1_2_5379332_A_T_- AAAGGGCAGCCTTCTC-1 2 5379332 A T - 1 1 A>T T>A +AACGAAATCCATGATG-1_17_39848018_C_T_+ AACGAAATCCATGATG-1 17 39848018 C T + 2 2 C>T C>T +AACCTGACAGCAGTGA-1_2_71225917_C_T_+ AACCTGACAGCAGTGA-1 2 71225917 C T + 1 1 C>T C>T +AACCAACAGGTCACTT-1_5_36795838_G_A_- AACCAACAGGTCACTT-1 5 36795838 G A - 1 1 G>A C>T +AACTTCTCAGAGGACT-1_16_57391532_A_G_- AACTTCTCAGAGGACT-1 16 57391532 A G - 1 1 A>G T>C +AACCACAAGCCTTTCC-1_6_82652134_A_G_- AACCACAAGCCTTTCC-1 6 82652134 A G - 1 1 A>G T>C +AACAACCGTATGTCTG-1_4_47469973_T_G_- AACAACCGTATGTCTG-1 4 47469973 T G - 1 1 T>G A>C +AAACGCTCAGTAGGAC-1_11_57084182_T_G_+ AAACGCTCAGTAGGAC-1 11 57084182 T G + 1 1 T>G T>G AAACGCTCAGTAGGAC-1_19_7198569_G_A_- AAACGCTCAGTAGGAC-1 19 7198569 G A - 1 1 G>A C>T -AAACCCACACCGTGGT-1_19_9984948_C_T_+ AAACCCACACCGTGGT-1 19 9984948 C T + 1 2 C>T C>T -AAAGTCCAGTCTGGTT-1_19_38636767_T_C_+ AAAGTCCAGTCTGGTT-1 19 38636767 T C + 1 1 T>C T>C -AAATGGAGTACCGGAA-1_19_9984883_G_T_+ AAATGGAGTACCGGAA-1 19 9984883 G T + 1 1 G>T G>T -AACAAAGGTGTAGTGG-1_19_29388030_A_G_+ AACAAAGGTGTAGTGG-1 19 29388030 A G + 1 1 A>G A>G -AACAACCAGTAATACG-1_19_23165193_T_G_+ AACAACCAGTAATACG-1 19 23165193 T G + 1 1 T>G T>G -AACCAACTCGATGGAG-1_19_44306705_C_T_+ AACCAACTCGATGGAG-1 19 44306705 C T + 1 1 C>T C>T -AAGATAGCAATAACGA-1_19_41918484_A_G_+ AAGATAGCAATAACGA-1 19 41918484 A G + 1 1 A>G A>G -AACCTTTAGACCAGAC-1_19_41063605_A_C_- AACCTTTAGACCAGAC-1 19 41063605 A C - 1 1 A>C T>G -AACAGGGTCTTCCACG-1_19_7276862_C_G_- AACAGGGTCTTCCACG-1 19 7276862 C G - 1 1 C>G G>C -AACAAAGCACGCAGTC-1_19_5802154_C_T_- AACAAAGCACGCAGTC-1 19 5802154 C T - 1 2 C>T G>A -AACGAAATCCCGAAAT-1_19_32672590_G_A_- AACGAAATCCCGAAAT-1 19 32672590 G A - 1 1 G>A C>T -AAGATAGCACGCGTGT-1_19_4837762_C_G_- AAGATAGCACGCGTGT-1 19 4837762 C G - 1 1 C>G G>C -AACAAAGGTGTAGTGG-1_19_29388092_T_C_+ AACAAAGGTGTAGTGG-1 19 29388092 T C + 1 1 T>C T>C -AAATGGACAAGCGCAA-1_19_60762077_G_A_- AAATGGACAAGCGCAA-1 19 60762077 G A - 1 1 G>A C>T -AAAGTGATCTCGGCTT-1_19_5802077_A_G_- AAAGTGATCTCGGCTT-1 19 5802077 A G - 1 2 A>G T>C -AACCAACGTGGTATGG-1_19_5492782_G_C_+ AACCAACGTGGTATGG-1 19 5492782 G C + 1 1 G>C G>C -AAACGAAGTGATGTAA-1_19_10517087_A_G_- AAACGAAGTGATGTAA-1 19 10517087 A G - 1 1 A>G T>C -AAACGCTCAGTAGGAC-1_19_7215256_G_A_- AAACGCTCAGTAGGAC-1 19 7215256 G A - 1 1 G>A C>T +AAAGGATAGTTCATGC-1_17_39848018_C_T_+ AAAGGATAGTTCATGC-1 17 39848018 C T + 1 1 C>T C>T +AAAGTGAGTAGGTACG-1_9_57122007_C_T_+ AAAGTGAGTAGGTACG-1 9 57122007 C T + 1 1 C>T C>T +AACCCAATCTTGCAAG-1_4_68809311_C_A_- AACCCAATCTTGCAAG-1 4 68809311 C A - 1 1 C>A G>T +AACTTCTAGTGATGGC-1_16_16885303_G_T_+ AACTTCTAGTGATGGC-1 16 16885303 G T + 1 1 G>T G>T +AACCTGAGTCGATTAC-1_3_106572945_G_A_+ AACCTGAGTCGATTAC-1 3 106572945 G A + 1 1 G>A G>A +AAAGGATGTGCTCGTG-1_5_71033563_T_C_- AAAGGATGTGCTCGTG-1 5 71033563 T C - 1 1 T>C A>G +AACCACATCCTAGCTC-1_16_84954719_A_T_- AACCACATCCTAGCTC-1 16 84954719 A T - 1 1 A>T T>A +AAAGGGCTCTCACTCG-1_10_100070557_G_A_+ AAAGGGCTCTCACTCG-1 10 100070557 G A + 1 1 G>A G>A +AAACGCTGTCATGGCC-1_1_75263995_T_G_- AAACGCTGTCATGGCC-1 1 75263995 T G - 1 1 T>G A>C +AAAGTCCTCCTACAAG-1_2_148871922_G_A_- AAAGTCCTCCTACAAG-1 2 148871922 G A - 1 1 G>A C>T +AAGACAAAGAGTTCGG-1_3_55469996_A_T_+ AAGACAAAGAGTTCGG-1 3 55469996 A T + 1 1 A>T A>T +AACCATGTCCTCGCAT-1_6_12315109_G_A_- AACCATGTCCTCGCAT-1 6 12315109 G A - 1 1 G>A C>T +AACAACCAGGAACTAT-1_2_178424387_C_T_+ AACAACCAGGAACTAT-1 2 178424387 C T + 1 1 C>T C>T +AACAACCCATTAAAGG-1_2_167515767_C_A_+ AACAACCCATTAAAGG-1 2 167515767 C A + 1 1 C>A C>A +AACCAACCAGTCGCTG-1_11_79579755_C_T_+ AACCAACCAGTCGCTG-1 11 79579755 C T + 1 1 C>T C>T +AAAGGGCCAACCAATC-1_16_57391683_T_A_- AAAGGGCCAACCAATC-1 16 57391683 T A - 1 1 T>A A>T +AAACGAACAAACTGCT-1_3_108361267_T_A_+ AAACGAACAAACTGCT-1 3 108361267 T A + 1 1 T>A T>A +AACGGGAAGCATACTC-1_5_146261080_C_A_+ AACGGGAAGCATACTC-1 5 146261080 C A + 1 1 C>A C>A +AACAAAGCACGGCACT-1_4_43032499_G_T_- AACAAAGCACGGCACT-1 4 43032499 G T - 1 1 G>T C>A +AACGAAACAGCCCACA-1_9_123461940_T_G_+ AACGAAACAGCCCACA-1 9 123461940 T G + 1 1 T>G T>G +AACAACCGTATCCTCC-1_17_39848018_C_T_+ AACAACCGTATCCTCC-1 17 39848018 C T + 1 1 C>T C>T +AACTTCTAGAGACAAG-1_18_45685572_A_T_+ AACTTCTAGAGACAAG-1 18 45685572 A T + 1 1 A>T A>T +AACGTCACAACCAGAG-1_4_9562274_A_T_- AACGTCACAACCAGAG-1 4 9562274 A T - 1 1 A>T T>A +AAAGAACAGCCTGAAG-1_6_120795446_G_A_- AAAGAACAGCCTGAAG-1 6 120795446 G A - 1 1 G>A C>T +AAACCCAGTGCTCGTG-1_16_57391454_T_C_- AAACCCAGTGCTCGTG-1 16 57391454 T C - 1 1 T>C A>G +AACAACCAGTAATACG-1_1_68739119_G_A_- AACAACCAGTAATACG-1 1 68739119 G A - 1 1 G>A C>T +AACTTCTAGGGATCTG-1_4_134927186_A_G_+ AACTTCTAGGGATCTG-1 4 134927186 A G + 1 1 A>G A>G +AAAGGTATCAGTCATG-1_6_85942374_T_A_- AAAGGTATCAGTCATG-1 6 85942374 T A - 1 1 T>A A>T +AAACGCTGTCAACACT-1_17_39848018_C_T_+ AAACGCTGTCAACACT-1 17 39848018 C T + 1 1 C>T C>T +AAGACTCGTGCGGTAA-1_17_39847215_C_A_+ AAGACTCGTGCGGTAA-1 17 39847215 C A + 1 2 C>A C>A +AAGAACACACAAGCCC-1_1_64547081_C_A_+ AAGAACACACAAGCCC-1 1 64547081 C A + 1 1 C>A C>A +AAGAACAAGTCTCTGA-1_9_3006341_T_A_+ AAGAACAAGTCTCTGA-1 9 3006341 T A + 1 1 T>A T>A +AAGAACAAGTCTCTGA-1_12_72211927_G_A_- AAGAACAAGTCTCTGA-1 12 72211927 G A - 1 1 G>A C>T +AACCTGACATCATCCC-1_9_107665919_T_A_- AACCTGACATCATCCC-1 9 107665919 T A - 1 1 T>A A>T +AACTTCTCATGAATAG-1_2_130495163_T_C_+ AACTTCTCATGAATAG-1 2 130495163 T C + 1 1 T>C T>C +AACCAACCAAGTTGGG-1_13_110057120_G_A_- AACCAACCAAGTTGGG-1 13 110057120 G A - 1 1 G>A C>T +AAGAACACAACCGCTG-1_13_55498462_G_C_- AAGAACACAACCGCTG-1 13 55498462 G C - 1 1 G>C C>G +AAGAACAAGCTCGACC-1_3_80705804_C_T_- AAGAACAAGCTCGACC-1 3 80705804 C T - 1 1 C>T G>A +AACCAACTCAGTGGGA-1_17_39847426_T_C_- AACCAACTCAGTGGGA-1 17 39847426 T C - 1 1 T>C A>G +AACAAAGGTCGCTGCA-1_12_55489667_C_A_- AACAAAGGTCGCTGCA-1 12 55489667 C A - 1 1 C>A G>T +AAAGTCCAGTCGGCCT-1_11_120345977_G_A_- AAAGTCCAGTCGGCCT-1 11 120345977 G A - 1 1 G>A C>T +AACGAAACACGCTGCA-1_17_87433655_G_A_- AACGAAACACGCTGCA-1 17 87433655 G A - 1 1 G>A C>T +AACCTGACATCGTCCT-1_7_144921022_C_T_+ AACCTGACATCGTCCT-1 7 144921022 C T + 1 1 C>T C>T +AACCAACAGCTACTGT-1_2_91308360_C_T_- AACCAACAGCTACTGT-1 2 91308360 C T - 1 1 C>T G>A +AAACGAACATGGATCT-1_14_104715799_C_G_+ AAACGAACATGGATCT-1 14 104715799 C G + 1 1 C>G C>G +AACGTCAAGCGAGGAG-1_10_80403110_G_A_- AACGTCAAGCGAGGAG-1 10 80403110 G A - 1 1 G>A C>T +AAGACAATCGCGTAGC-1_17_39847263_A_G_- AAGACAATCGCGTAGC-1 17 39847263 A G - 1 1 A>G T>C +AAGATAGCACGCGTGT-1_18_42802410_T_C_- AAGATAGCACGCGTGT-1 18 42802410 T C - 1 1 T>C A>G +AACCCAAAGAATTGTG-1_13_44869654_C_T_+ AACCCAAAGAATTGTG-1 13 44869654 C T + 1 1 C>T C>T +AACAAAGAGGTGCGAT-1_6_5164757_C_T_+ AACAAAGAGGTGCGAT-1 6 5164757 C T + 1 1 C>T C>T +AACGGGAGTAGCACGA-1_9_108559910_C_T_+ AACGGGAGTAGCACGA-1 9 108559910 C T + 1 1 C>T C>T +AACCTTTCATTGAAAG-1_16_38449822_A_T_- AACCTTTCATTGAAAG-1 16 38449822 A T - 1 1 A>T T>A +AACGTCATCTGGCTGG-1_2_32633746_T_C_+ AACGTCATCTGGCTGG-1 2 32633746 T C + 1 1 T>C T>C +AAATGGAAGCAGATAT-1_5_149048398_C_A_- AAATGGAAGCAGATAT-1 5 149048398 C A - 1 1 C>A G>T +AACCATGTCCTCTCGA-1_17_39847195_G_C_+ AACCATGTCCTCTCGA-1 17 39847195 G C + 1 1 G>C G>C +AAGACTCGTGGTACAG-1_12_84918487_G_A_- AAGACTCGTGGTACAG-1 12 84918487 G A - 1 1 G>A C>T +AAAGGTAGTATGTGTC-1_6_38569340_A_T_+ AAAGGTAGTATGTGTC-1 6 38569340 A T + 1 1 A>T A>T +AACTTCTGTAGTCGGA-1_5_134620112_G_A_- AACTTCTGTAGTCGGA-1 5 134620112 G A - 1 1 G>A C>T +AACACACCAGACCAGA-1_14_93819817_T_C_- AACACACCAGACCAGA-1 14 93819817 T C - 1 1 T>C A>G +AACAAGACACTACTTT-1_13_98839209_T_C_- AACAAGACACTACTTT-1 13 98839209 T C - 1 1 T>C A>G +AAACGAAAGTGGACTG-1_2_174465393_G_A_- AAACGAAAGTGGACTG-1 2 174465393 G A - 1 1 G>A C>T +AAAGGGCCACACTTAG-1_11_23664464_T_C_- AAAGGGCCACACTTAG-1 11 23664464 T C - 1 1 T>C A>G +AACAGGGAGGATTACA-1_2_73610690_G_A_- AACAGGGAGGATTACA-1 2 73610690 G A - 1 1 G>A C>T +AAGATAGAGGAATCGC-1_5_100078075_A_G_- AAGATAGAGGAATCGC-1 5 100078075 A G - 1 1 A>G T>C +AACCTGACATGAGATA-1_11_119844812_C_A_+ AACCTGACATGAGATA-1 11 119844812 C A + 1 1 C>A C>A +AACCTTTAGGGTATAT-1_5_49307898_A_G_- AACCTTTAGGGTATAT-1 5 49307898 A G - 1 1 A>G T>C +AAACCCACAATCTCTT-1_17_37049368_C_T_+ AAACCCACAATCTCTT-1 17 37049368 C T + 1 1 C>T C>T +AACCACAAGTTGCCTA-1_11_54723579_T_A_- AACCACAAGTTGCCTA-1 11 54723579 T A - 1 1 T>A A>T +AAAGGGCCAGCGACAA-1_17_39847266_G_A_- AAAGGGCCAGCGACAA-1 17 39847266 G A - 1 1 G>A C>T +AACCATGAGGAAAGGT-1_12_85272575_G_A_- AACCATGAGGAAAGGT-1 12 85272575 G A - 1 1 G>A C>T +AAATGGAAGCCAAGGT-1_17_39848018_C_T_+ AAATGGAAGCCAAGGT-1 17 39848018 C T + 1 1 C>T C>T +AACCCAACACTGTTCC-1_12_8748903_A_G_+ AACCCAACACTGTTCC-1 12 8748903 A G + 1 1 A>G A>G +AACTTCTAGCAGATAT-1_18_6112797_C_T_- AACTTCTAGCAGATAT-1 18 6112797 C T - 1 1 C>T G>A +AACAAGAAGGTTCAGG-1_18_77778463_G_T_+ AACAAGAAGGTTCAGG-1 18 77778463 G T + 1 1 G>T G>T +AACCCAAGTATCGATC-1_JH584304.1_53546_A_C_- AACCCAAGTATCGATC-1 JH584304.1 53546 A C - 1 1 A>C T>G +AAACGAAAGGTAGTCG-1_13_54383748_C_A_+ AAACGAAAGGTAGTCG-1 13 54383748 C A + 1 1 C>A C>A +AAATGGACATGCCGAC-1_1_185286328_T_A_+ AAATGGACATGCCGAC-1 1 185286328 T A + 1 1 T>A T>A +AACGGGACATATGCGT-1_17_39848018_C_T_+ AACGGGACATATGCGT-1 17 39848018 C T + 1 1 C>T C>T +AACAACCCATTCGGGC-1_2_98662904_G_C_+ AACAACCCATTCGGGC-1 2 98662904 G C + 1 1 G>C G>C +AACCAACCAGATCCAT-1_15_103213123_C_A_- AACCAACCAGATCCAT-1 15 103213123 C A - 1 1 C>A G>T +AAACCCACAATCTCTT-1_18_82585559_C_A_+ AAACCCACAATCTCTT-1 18 82585559 C A + 1 1 C>A C>A +AACCACAAGTTGCCTA-1_11_54723582_T_A_- AACCACAAGTTGCCTA-1 11 54723582 T A - 1 1 T>A A>T +AACCATGAGCATCGAG-1_4_123683896_A_G_- AACCATGAGCATCGAG-1 4 123683896 A G - 1 1 A>G T>C +AAGAACACACTAGGTT-1_17_39847194_C_T_- AAGAACACACTAGGTT-1 17 39847194 C T - 1 2 C>T G>A +AACGTCAAGCGAGGAG-1_4_130781372_G_A_+ AACGTCAAGCGAGGAG-1 4 130781372 G A + 1 1 G>A G>A +AACCTGAAGTCCCAGC-1_2_144142629_A_G_- AACCTGAAGTCCCAGC-1 2 144142629 A G - 1 1 A>G T>C +AACCAACCAGCGACAA-1_2_156147748_G_A_- AACCAACCAGCGACAA-1 2 156147748 G A - 1 1 G>A C>T +AACAGGGTCTTCCACG-1_6_129542129_C_T_+ AACAGGGTCTTCCACG-1 6 129542129 C T + 1 1 C>T C>T +AAAGTCCGTGAGTAAT-1_3_136670423_G_A_+ AAAGTCCGTGAGTAAT-1 3 136670423 G A + 1 1 G>A G>A +AACCTGACAAACCACT-1_10_32320185_A_G_- AACCTGACAAACCACT-1 10 32320185 A G - 1 1 A>G T>C +AACTTCTCACACGTGC-1_1_162094877_T_C_- AACTTCTCACACGTGC-1 1 162094877 T C - 1 1 T>C A>G +AACAAGAAGCATACTC-1_9_3000509_T_A_- AACAAGAAGCATACTC-1 9 3000509 T A - 1 1 T>A A>T +AAAGGGCAGACTACCT-1_16_57391679_G_T_- AAAGGGCAGACTACCT-1 16 57391679 G T - 1 1 G>T C>A +AACCACAAGTTGCCTA-1_11_70698668_T_C_- AACCACAAGTTGCCTA-1 11 70698668 T C - 1 1 T>C A>G +AAACGAAGTGTTTACG-1_1_153478093_C_T_- AAACGAAGTGTTTACG-1 1 153478093 C T - 1 1 C>T G>A +AAATGGATCTGCGGCA-1_5_71763542_A_G_+ AAATGGATCTGCGGCA-1 5 71763542 A G + 1 1 A>G A>G +AAAGGGCGTACCGTCG-1_6_116371861_T_C_+ AAAGGGCGTACCGTCG-1 6 116371861 T C + 1 1 T>C T>C +AAATGGACACCCGTAG-1_10_97744020_T_C_- AAATGGACACCCGTAG-1 10 97744020 T C - 1 1 T>C A>G +AACCAACGTGCCTAAT-1_17_39848018_C_T_+ AACCAACGTGCCTAAT-1 17 39848018 C T + 1 1 C>T C>T +AAGAACAAGGGTTTCT-1_2_4037293_A_T_+ AAGAACAAGGGTTTCT-1 2 4037293 A T + 1 1 A>T A>T +AACAAAGTCGTTCGCT-1_19_36917579_A_C_- AACAAAGTCGTTCGCT-1 19 36917579 A C - 1 1 A>C T>G +AACCTTTCATTGAAAG-1_3_146419144_A_G_+ AACCTTTCATTGAAAG-1 3 146419144 A G + 1 1 A>G A>G +AACCCAAGTATCGATC-1_18_75136095_A_G_+ AACCCAAGTATCGATC-1 18 75136095 A G + 1 1 A>G A>G +AAAGGGCCAGCGCTTG-1_6_113616790_C_T_+ AAAGGGCCAGCGCTTG-1 6 113616790 C T + 1 1 C>T C>T +AAGAACAGTTCGGTTA-1_4_149125347_T_G_- AAGAACAGTTCGGTTA-1 4 149125347 T G - 1 1 T>G A>C +AAATGGAAGCAGATAT-1_4_138457009_T_A_+ AAATGGAAGCAGATAT-1 4 138457009 T A + 1 1 T>A T>A +AACAACCCAGCACAGA-1_2_32379228_T_C_- AACAACCCAGCACAGA-1 2 32379228 T C - 1 1 T>C A>G +AAAGAACAGAATACAC-1_17_24721647_C_T_+ AAAGAACAGAATACAC-1 17 24721647 C T + 1 1 C>T C>T +AACGTCACATCAGTCA-1_15_74994936_A_G_- AACGTCACATCAGTCA-1 15 74994936 A G - 1 1 A>G T>C +AAACGAAAGGTAGTCG-1_16_94469096_C_A_+ AAACGAAAGGTAGTCG-1 16 94469096 C A + 1 1 C>A C>A +AAACGAATCGTCGCTT-1_17_25731211_C_T_+ AAACGAATCGTCGCTT-1 17 25731211 C T + 1 1 C>T C>T +AACCTTTTCACAGAGG-1_9_50635947_A_G_- AACCTTTTCACAGAGG-1 9 50635947 A G - 1 1 A>G T>C +AAAGGGCCAGCGCTTG-1_5_4826530_C_T_- AAAGGGCCAGCGCTTG-1 5 4826530 C T - 1 1 C>T G>A +AACCTTTCAGACCTGC-1_8_123663735_A_G_+ AACCTTTCAGACCTGC-1 8 123663735 A G + 1 1 A>G A>G +AAATGGATCTTCCTAA-1_4_155820000_C_T_+ AAATGGATCTTCCTAA-1 4 155820000 C T + 1 1 C>T C>T +AACAAGAGTGGCGTAA-1_1_77368336_G_A_- AACAAGAGTGGCGTAA-1 1 77368336 G A - 1 1 G>A C>T +AAAGTCCTCCTACAAG-1_2_31140329_T_C_- AAAGTCCTCCTACAAG-1 2 31140329 T C - 1 1 T>C A>G +AACACACCAGACCAGA-1_7_24978392_G_A_- AACACACCAGACCAGA-1 7 24978392 G A - 1 1 G>A C>T +AAACGCTGTGAGGATC-1_17_39847426_T_C_+ AAACGCTGTGAGGATC-1 17 39847426 T C + 1 1 T>C T>C +AAACGCTCAGTAGGAC-1_2_79672761_G_A_+ AAACGCTCAGTAGGAC-1 2 79672761 G A + 1 1 G>A G>A +AAAGAACCAACTTCTT-1_2_144142638_G_A_- AAAGAACCAACTTCTT-1 2 144142638 G A - 1 1 G>A C>T +AAGAACAGTAAGATAC-1_12_75714642_T_A_- AAGAACAGTAAGATAC-1 12 75714642 T A - 1 1 T>A A>T +AAAGTCCCAACCAGAG-1_16_57391680_C_T_- AAAGTCCCAACCAGAG-1 16 57391680 C T - 1 1 C>T G>A +AAATGGAGTGAAGCTG-1_17_39848018_C_T_+ AAATGGAGTGAAGCTG-1 17 39848018 C T + 1 1 C>T C>T +AACCTGAAGAGGCGTT-1_X_74311051_T_C_+ AACCTGAAGAGGCGTT-1 X 74311051 T C + 1 1 T>C T>C +AACCAACCAGATCCAT-1_4_76927974_T_G_- AACCAACCAGATCCAT-1 4 76927974 T G - 1 1 T>G A>C +AACCCAAGTATCGATC-1_17_33996074_T_A_- AACCCAAGTATCGATC-1 17 33996074 T A - 1 1 T>A A>T +AAGACAAGTACTGACT-1_9_110262349_T_G_+ AAGACAAGTACTGACT-1 9 110262349 T G + 1 1 T>G T>G +AAGATAGCACGCGTGT-1_12_34515161_C_T_- AAGATAGCACGCGTGT-1 12 34515161 C T - 1 1 C>T G>A +AACGTCACACGAGGTA-1_15_76906148_A_G_+ AACGTCACACGAGGTA-1 15 76906148 A G + 1 1 A>G A>G +AACAAGAAGCAATTAG-1_5_29766985_T_C_+ AACAAGAAGCAATTAG-1 5 29766985 T C + 1 1 T>C T>C +AACTTCTCACTTCTCG-1_17_13015099_C_T_+ AACTTCTCACTTCTCG-1 17 13015099 C T + 1 1 C>T C>T +AACCACAGTGTTCCTC-1_5_138259125_T_C_+ AACCACAGTGTTCCTC-1 5 138259125 T C + 1 1 T>C T>C +AAAGTGACAAATGGCG-1_7_129606535_A_G_+ AAAGTGACAAATGGCG-1 7 129606535 A G + 1 1 A>G A>G +AACGGGACAGGACAGT-1_17_39844984_C_T_+ AACGGGACAGGACAGT-1 17 39844984 C T + 1 1 C>T C>T +AAAGAACTCTCACCCA-1_8_40454859_A_G_+ AAAGAACTCTCACCCA-1 8 40454859 A G + 1 1 A>G A>G +AAGAACAAGGTCGAGT-1_16_57391677_C_G_- AAGAACAAGGTCGAGT-1 16 57391677 C G - 1 1 C>G G>C +AAAGTGACAAATACAG-1_17_11110394_G_A_+ AAAGTGACAAATACAG-1 17 11110394 G A + 1 1 G>A G>A +AAGAACAGTTGCAAGG-1_17_39848018_C_T_+ AAGAACAGTTGCAAGG-1 17 39848018 C T + 1 1 C>T C>T +AACCACATCAAAGAAC-1_17_70974091_T_C_- AACCACATCAAAGAAC-1 17 70974091 T C - 1 1 T>C A>G +AACTTCTCACACGTGC-1_14_54940647_G_T_+ AACTTCTCACACGTGC-1 14 54940647 G T + 1 1 G>T G>T +AAAGGGCCACCAGTTA-1_6_124913734_G_C_- AAAGGGCCACCAGTTA-1 6 124913734 G C - 1 1 G>C C>G +AACAGGGCAAACTCGT-1_17_26699490_A_G_+ AACAGGGCAAACTCGT-1 17 26699490 A G + 1 1 A>G A>G +AAACGCTAGGCTCACC-1_2_166948652_G_A_- AAACGCTAGGCTCACC-1 2 166948652 G A - 1 1 G>A C>T +AAAGAACTCATTACTC-1_17_30592945_G_A_- AAAGAACTCATTACTC-1 17 30592945 G A - 1 1 G>A C>T +AAACCCACAGAGGAAA-1_4_152333911_C_T_+ AAACCCACAGAGGAAA-1 4 152333911 C T + 1 1 C>T C>T +AAACGCTCAGTAGGAC-1_19_7215361_G_A_- AAACGCTCAGTAGGAC-1 19 7215361 G A - 1 1 G>A C>T +AAAGGTATCCCGTAAA-1_13_34178126_C_T_+ AAAGGTATCCCGTAAA-1 13 34178126 C T + 1 1 C>T C>T +AACGTCAAGACTCTTG-1_5_146261122_A_G_+ AACGTCAAGACTCTTG-1 5 146261122 A G + 1 1 A>G A>G +AACAACCGTTGCAACT-1_10_3946238_A_G_+ AACAACCGTTGCAACT-1 10 3946238 A G + 1 1 A>G A>G +AACTTCTCATGAATAG-1_MT_6234_G_T_+ AACTTCTCATGAATAG-1 MT 6234 G T + 1 1 G>T G>T +AACCCAAGTATCGATC-1_13_54759096_G_C_- AACCCAAGTATCGATC-1 13 54759096 G C - 1 1 G>C C>G +AACAGGGCACCACTGG-1_17_39847212_C_T_- AACAGGGCACCACTGG-1 17 39847212 C T - 1 1 C>T G>A +AACCACAAGTTGCCTA-1_1_106260287_C_G_+ AACCACAAGTTGCCTA-1 1 106260287 C G + 1 1 C>G C>G +AAAGTGAGTTCTGACA-1_6_106698986_C_T_+ AAAGTGAGTTCTGACA-1 6 106698986 C T + 1 1 C>T C>T +AACAGGGTCTTCCACG-1_16_66656296_G_A_- AACAGGGTCTTCCACG-1 16 66656296 G A - 1 1 G>A C>T +AAAGTCCCAAACGGCA-1_9_110262210_A_C_+ AAAGTCCCAAACGGCA-1 9 110262210 A C + 1 1 A>C A>C +AAAGTCCAGTCGGCCT-1_X_135844406_C_T_+ AAAGTCCAGTCGGCCT-1 X 135844406 C T + 1 1 C>T C>T +AACCTTTCAGACCTGC-1_8_123663739_G_A_+ AACCTTTCAGACCTGC-1 8 123663739 G A + 1 1 G>A G>A +AACACACCAGACCAGA-1_1_24685524_T_C_+ AACACACCAGACCAGA-1 1 24685524 T C + 1 1 T>C T>C +AACAAGAGTTCATCTT-1_11_115416017_G_A_- AACAAGAGTTCATCTT-1 11 115416017 G A - 1 1 G>A C>T +AAGATAGAGCCAACCC-1_16_57391454_T_C_- AAGATAGAGCCAACCC-1 16 57391454 T C - 1 1 T>C A>G +AACAACCCAAAGCTCT-1_2_181147886_G_C_- AACAACCCAAAGCTCT-1 2 181147886 G C - 1 1 G>C C>G +AACTTCTAGAACAGGA-1_15_64382183_T_A_- AACTTCTAGAACAGGA-1 15 64382183 T A - 1 1 T>A A>T +AAAGGTATCCGGTAGC-1_13_48879411_A_G_- AAAGGTATCCGGTAGC-1 13 48879411 A G - 1 1 A>G T>C +AAAGTCCCATGTGGCC-1_X_133671187_C_A_- AAAGTCCCATGTGGCC-1 X 133671187 C A - 1 1 C>A G>T +AACCTTTCACACCTGG-1_2_83883158_C_T_+ AACCTTTCACACCTGG-1 2 83883158 C T + 1 1 C>T C>T +AAAGTGATCTCGGCTT-1_17_39847403_T_G_+ AAAGTGATCTCGGCTT-1 17 39847403 T G + 1 1 T>G T>G +AACCTGAAGTCCCAGC-1_2_125737220_G_A_- AACCTGAAGTCCCAGC-1 2 125737220 G A - 1 1 G>A C>T +AACCTGACAATAGTAG-1_10_60666642_G_C_- AACCTGACAATAGTAG-1 10 60666642 G C - 1 1 G>C C>G +AAAGGTAAGACTTCAC-1_4_83466748_G_A_- AAAGGTAAGACTTCAC-1 4 83466748 G A - 1 1 G>A C>T +AAAGGGCAGTAAGCAT-1_11_101445515_T_A_+ AAAGGGCAGTAAGCAT-1 11 101445515 T A + 1 1 T>A T>A +AACTTCTCAGCCTATA-1_1_169742507_G_A_- AACTTCTCAGCCTATA-1 1 169742507 G A - 1 1 G>A C>T +AAGAACACAACTGATC-1_5_142903841_T_C_- AAGAACACAACTGATC-1 5 142903841 T C - 1 1 T>C A>G +AACACACCAGACCAGA-1_12_99965535_G_A_+ AACACACCAGACCAGA-1 12 99965535 G A + 1 1 G>A G>A +AAACGCTTCAAAGGAT-1_5_146261080_C_A_+ AAACGCTTCAAAGGAT-1 5 146261080 C A + 1 1 C>A C>A +AAACGCTCATCAACCA-1_3_73310345_G_T_+ AAACGCTCATCAACCA-1 3 73310345 G T + 1 1 G>T G>T +AACCAACGTCTACAGT-1_17_24580307_C_T_+ AACCAACGTCTACAGT-1 17 24580307 C T + 1 1 C>T C>T +AACGAAACAGCGTATT-1_13_44869614_A_G_+ AACGAAACAGCGTATT-1 13 44869614 A G + 1 1 A>G A>G +AACAAAGCACGGCACT-1_11_32284335_T_A_+ AACAAAGCACGGCACT-1 11 32284335 T A + 1 10 T>A T>A +AAAGGGCAGGACATCG-1_6_28575721_A_C_+ AAAGGGCAGGACATCG-1 6 28575721 A C + 1 1 A>C A>C +AAGACTCGTAAGTCAA-1_11_29495649_G_T_+ AAGACTCGTAAGTCAA-1 11 29495649 G T + 1 1 G>T G>T +AAGACAAAGGGCAGGA-1_17_39847458_A_G_+ AAGACAAAGGGCAGGA-1 17 39847458 A G + 1 1 A>G A>G AACGTCAAGCGTTACT-1_19_41918369_C_T_+ AACGTCAAGCGTTACT-1 19 41918369 C T + 1 1 C>T C>T -AAGAACAGTTGGAGGT-1_19_5664748_C_G_- AAGAACAGTTGGAGGT-1 19 5664748 C G - 1 1 C>G G>C +AACGTCATCTGGCTGG-1_2_32633742_A_C_+ AACGTCATCTGGCTGG-1 2 32633742 A C + 1 1 A>C A>C +AACTTCTAGAGTCCGA-1_13_93403916_G_A_+ AACTTCTAGAGTCCGA-1 13 93403916 G A + 1 1 G>A G>A +AAGAACATCTAGTACG-1_16_57391609_C_T_- AAGAACATCTAGTACG-1 16 57391609 C T - 1 1 C>T G>A +AAGACTCAGAAATTCG-1_16_57391679_G_T_- AAGACTCAGAAATTCG-1 16 57391679 G T - 1 1 G>T C>A +AACTTCTCACTAACGT-1_6_67284091_C_A_+ AACTTCTCACTAACGT-1 6 67284091 C A + 1 1 C>A C>A +AAACCCACACTGAGGA-1_17_39848018_C_T_+ AAACCCACACTGAGGA-1 17 39848018 C T + 1 1 C>T C>T +AACGTCACATAGATGA-1_8_9659592_A_G_- AACGTCACATAGATGA-1 8 9659592 A G - 1 1 A>G T>C +AAACCCAGTGCTCGTG-1_11_102477357_C_T_- AAACCCAGTGCTCGTG-1 11 102477357 C T - 1 1 C>T G>A +AACAACCGTATGTCTG-1_9_113816672_T_C_+ AACAACCGTATGTCTG-1 9 113816672 T C + 1 1 T>C T>C +AAGAACAAGCTCGACC-1_8_121881299_A_C_- AAGAACAAGCTCGACC-1 8 121881299 A C - 1 1 A>C T>G +AAGACTCCAGGCGAAT-1_2_30031448_T_A_+ AAGACTCCAGGCGAAT-1 2 30031448 T A + 1 1 T>A T>A +AACCTGACAAGTGACG-1_10_95533717_A_T_+ AACCTGACAAGTGACG-1 10 95533717 A T + 1 1 A>T A>T +AACACACTCTGCGGGT-1_5_146261113_T_C_+ AACACACTCTGCGGGT-1 5 146261113 T C + 1 1 T>C T>C +AACCAACAGGATACGC-1_17_39847435_A_G_- AACCAACAGGATACGC-1 17 39847435 A G - 1 1 A>G T>C +AACGGGAAGTTGCCCG-1_4_107200666_C_T_+ AACGGGAAGTTGCCCG-1 4 107200666 C T + 1 1 C>T C>T +AAAGGTACAATTGCGT-1_8_121789815_C_T_+ AAAGGTACAATTGCGT-1 8 121789815 C T + 1 1 C>T C>T +AAACGAAAGTGGACTG-1_17_56613430_C_A_+ AAACGAAAGTGGACTG-1 17 56613430 C A + 1 1 C>A C>A +AACAAAGCACGCAGTC-1_MT_15050_C_A_+ AACAAAGCACGCAGTC-1 MT 15050 C A + 1 1 C>A C>A +AACAACCAGACGACTG-1_9_70554624_T_G_+ AACAACCAGACGACTG-1 9 70554624 T G + 1 1 T>G T>G +AAAGAACAGCCTGAAG-1_2_132794932_C_T_+ AAAGAACAGCCTGAAG-1 2 132794932 C T + 1 2 C>T C>T +AACCCAACATGGACAG-1_MT_9554_A_C_+ AACCCAACATGGACAG-1 MT 9554 A C + 1 1 A>C A>C +AAGACTCTCCGAGGCT-1_17_39848018_C_T_+ AAGACTCTCCGAGGCT-1 17 39848018 C T + 1 1 C>T C>T +AACCTGACAGCTGTCG-1_1_168155477_C_T_- AACCTGACAGCTGTCG-1 1 168155477 C T - 1 1 C>T G>A +AAAGAACAGCCTGAAG-1_18_38186130_T_G_- AAAGAACAGCCTGAAG-1 18 38186130 T G - 1 1 T>G A>C +AACCTGATCTAGTACG-1_12_53005476_A_G_+ AACCTGATCTAGTACG-1 12 53005476 A G + 1 1 A>G A>G +AACAAAGTCTGAGAAA-1_X_105123786_C_T_+ AACAAAGTCTGAGAAA-1 X 105123786 C T + 1 1 C>T C>T +AAAGTCCCACCACATA-1_4_82320482_G_T_- AAAGTCCCACCACATA-1 4 82320482 G T - 1 1 G>T C>A +AAAGGGCCAGCGACCT-1_10_18587498_G_A_- AAAGGGCCAGCGACCT-1 10 18587498 G A - 1 1 G>A C>T +AAAGTCCTCCCAGCGA-1_2_119907994_C_A_+ AAAGTCCTCCCAGCGA-1 2 119907994 C A + 1 1 C>A C>A +AAGACAATCTCTATAC-1_10_80403109_T_G_- AAGACAATCTCTATAC-1 10 80403109 T G - 1 1 T>G A>C +AAAGTGAGTTCTCCCA-1_1_173862034_A_T_- AAAGTGAGTTCTCCCA-1 1 173862034 A T - 1 1 A>T T>A +AACGTCAGTGGAAATT-1_17_39848018_C_T_+ AACGTCAGTGGAAATT-1 17 39848018 C T + 1 1 C>T C>T +AAGATAGCAATAACGA-1_9_65356261_T_C_+ AAGATAGCAATAACGA-1 9 65356261 T C + 1 1 T>C T>C +AAACGCTGTCTGTTAG-1_4_52474984_A_G_+ AAACGCTGTCTGTTAG-1 4 52474984 A G + 1 1 A>G A>G +AAGACTCGTGGTACAG-1_14_73366330_G_A_- AAGACTCGTGGTACAG-1 14 73366330 G A - 1 1 G>A C>T +AACCACAAGCTTTGTG-1_1_152731350_C_T_- AACCACAAGCTTTGTG-1 1 152731350 C T - 1 1 C>T G>A +AACCATGAGTTGAAAC-1_11_120345859_C_A_- AACCATGAGTTGAAAC-1 11 120345859 C A - 1 1 C>A G>T +AAACGCTCATCAACCA-1_10_79711736_T_A_+ AAACGCTCATCAACCA-1 10 79711736 T A + 1 1 T>A T>A +AAGATAGCATGGGAAC-1_16_57391680_C_T_- AAGATAGCATGGGAAC-1 16 57391680 C T - 1 1 C>T G>A +AAGACTCTCATTGGTG-1_9_3035777_T_C_- AAGACTCTCATTGGTG-1 9 3035777 T C - 1 1 T>C A>G +AACCTGACAGCAGTGA-1_16_85136979_A_T_- AACCTGACAGCAGTGA-1 16 85136979 A T - 1 1 A>T T>A +AACCCAAAGTTCATGC-1_17_39848018_C_T_+ AACCCAAAGTTCATGC-1 17 39848018 C T + 1 1 C>T C>T +AAACGCTAGGTTACAA-1_2_119018293_G_A_- AAACGCTAGGTTACAA-1 2 119018293 G A - 1 1 G>A C>T +AAACCCACAGCTGTGC-1_2_28230543_C_T_+ AAACCCACAGCTGTGC-1 2 28230543 C T + 1 1 C>T C>T +AACACACTCCTTCACG-1_1_152383993_A_T_- AACACACTCCTTCACG-1 1 152383993 A T - 1 1 A>T T>A +AAAGAACTCGGCTTCT-1_11_53476838_G_A_- AAAGAACTCGGCTTCT-1 11 53476838 G A - 1 1 G>A C>T +AAACGAAGTTCATCTT-1_11_54639774_T_C_+ AAACGAAGTTCATCTT-1 11 54639774 T C + 1 1 T>C T>C +AACAACCGTATGTCTG-1_11_6419651_C_A_+ AACAACCGTATGTCTG-1 11 6419651 C A + 1 1 C>A C>A +AACCACACAGCTCTGG-1_13_90923173_C_T_+ AACCACACAGCTCTGG-1 13 90923173 C T + 1 1 C>T C>T +AACTTCTCATGAATAG-1_8_117308349_G_A_+ AACTTCTCATGAATAG-1 8 117308349 G A + 1 1 G>A G>A +AACAACCGTTTCACAG-1_5_104079186_C_T_- AACAACCGTTTCACAG-1 5 104079186 C T - 1 1 C>T G>A +AACACACCACAGTGTT-1_4_136896079_T_C_- AACACACCACAGTGTT-1 4 136896079 T C - 1 1 T>C A>G +AACCCAAAGCGATCGA-1_12_3441694_C_A_+ AACCCAAAGCGATCGA-1 12 3441694 C A + 1 1 C>A C>A +AAAGAACAGTCGCGAA-1_11_37139316_T_C_- AAAGAACAGTCGCGAA-1 11 37139316 T C - 1 1 T>C A>G +AACCACATCGGAGATG-1_5_8144069_T_C_- AACCACATCGGAGATG-1 5 8144069 T C - 1 1 T>C A>G +AAAGGGCGTACCGTCG-1_10_100043716_C_G_+ AAAGGGCGTACCGTCG-1 10 100043716 C G + 1 1 C>G C>G +AACAAGACAACAAGTA-1_1_85908417_G_A_+ AACAAGACAACAAGTA-1 1 85908417 G A + 1 1 G>A G>A +AAGACTCGTGGTACAG-1_2_140729743_T_C_+ AAGACTCGTGGTACAG-1 2 140729743 T C + 1 1 T>C T>C +AACCTGAAGGTAGACC-1_17_39848018_C_T_+ AACCTGAAGGTAGACC-1 17 39848018 C T + 1 1 C>T C>T +AACTTCTCACACGTGC-1_14_54940639_C_G_+ AACTTCTCACACGTGC-1 14 54940639 C G + 1 1 C>G C>G +AAGAACACAACTGATC-1_2_148871791_A_T_- AAGAACACAACTGATC-1 2 148871791 A T - 1 1 A>T T>A +AAACGCTTCTGAGCAT-1_1_170874307_G_A_- AAACGCTTCTGAGCAT-1 1 170874307 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_17_39847027_A_T_+ AAACGCTCAGTAGGAC-1 17 39847027 A T + 1 1 A>T A>T +AACGGGAGTTTGGCTA-1_12_87042029_G_A_+ AACGGGAGTTTGGCTA-1 12 87042029 G A + 1 1 G>A G>A +AACCCAACATGTGGTT-1_17_39847607_T_C_+ AACCCAACATGTGGTT-1 17 39847607 T C + 1 1 T>C T>C +AACCATGGTCTACAAC-1_9_70554624_T_G_+ AACCATGGTCTACAAC-1 9 70554624 T G + 1 1 T>G T>G +AAGACTCTCATTGGTG-1_5_29766924_C_T_+ AAGACTCTCATTGGTG-1 5 29766924 C T + 1 1 C>T C>T +AAACCCACACCGTGGT-1_5_93195357_A_C_- AAACCCACACCGTGGT-1 5 93195357 A C - 1 1 A>C T>G +AACAGGGGTGCACATT-1_6_97211262_G_A_+ AACAGGGGTGCACATT-1 6 97211262 G A + 1 1 G>A G>A +AACGGGACATTCCTAT-1_2_98667010_G_A_- AACGGGACATTCCTAT-1 2 98667010 G A - 1 1 G>A C>T +AAATGGACACCCGTAG-1_7_100814047_C_A_+ AAATGGACACCCGTAG-1 7 100814047 C A + 1 1 C>A C>A +AACCTTTCATTGAAAG-1_18_40330319_T_A_+ AACCTTTCATTGAAAG-1 18 40330319 T A + 1 1 T>A T>A +AACCACAAGACTTGTC-1_17_24721205_T_C_+ AACCACAAGACTTGTC-1 17 24721205 T C + 1 1 T>C T>C +AACAGGGTCAAGCCTA-1_4_47469865_G_A_- AACAGGGTCAAGCCTA-1 4 47469865 G A - 1 1 G>A C>T +AACCTTTCACACCTGG-1_1_153030295_G_C_+ AACCTTTCACACCTGG-1 1 153030295 G C + 1 1 G>C G>C +AAGAACACATACTGTG-1_6_110647261_T_A_+ AAGAACACATACTGTG-1 6 110647261 T A + 1 1 T>A T>A +AACCAACTCGATGGAG-1_17_25888666_G_T_- AACCAACTCGATGGAG-1 17 25888666 G T - 1 1 G>T C>A +AAGACAAAGATGCTAA-1_2_49774666_C_T_+ AAGACAAAGATGCTAA-1 2 49774666 C T + 1 1 C>T C>T +AAACCCACATATCTGG-1_11_52116945_C_A_+ AAACCCACATATCTGG-1 11 52116945 C A + 1 1 C>A C>A +AAACGAAGTTCATCTT-1_6_148141252_T_G_+ AAACGAAGTTCATCTT-1 6 148141252 T G + 1 1 T>G T>G +AAACGCTCAGTAGGAC-1_14_60970864_C_T_- AAACGCTCAGTAGGAC-1 14 60970864 C T - 1 1 C>T G>A +AACCACAAGCTTTGTG-1_7_116332986_G_A_- AACCACAAGCTTTGTG-1 7 116332986 G A - 1 1 G>A C>T +AACGGGAGTGAGCTCC-1_17_39847027_A_T_+ AACGGGAGTGAGCTCC-1 17 39847027 A T + 1 1 A>T A>T +AACACACAGTGAGTGC-1_11_77711984_C_A_+ AACACACAGTGAGTGC-1 11 77711984 C A + 1 1 C>A C>A +AACCAACCAGTCTTCC-1_9_3028869_G_A_- AACCAACCAGTCTTCC-1 9 3028869 G A - 1 1 G>A C>T +AAGAACATCTCCGAAA-1_7_118973719_A_C_- AAGAACATCTCCGAAA-1 7 118973719 A C - 1 1 A>C T>G +AACAGGGCAGATTTCG-1_16_43618988_G_A_+ AACAGGGCAGATTTCG-1 16 43618988 G A + 1 1 G>A G>A +AAACCCACAAAGACGC-1_13_12439649_C_T_- AAACCCACAAAGACGC-1 13 12439649 C T - 1 1 C>T G>A +AAACCCACACCGTGGT-1_11_6419650_C_T_+ AAACCCACACCGTGGT-1 11 6419650 C T + 1 1 C>T C>T +AAGACTCAGAAGCTCG-1_17_39847548_A_G_- AAGACTCAGAAGCTCG-1 17 39847548 A G - 1 1 A>G T>C +AAACCCACATATCTGG-1_9_28534464_A_C_+ AAACCCACATATCTGG-1 9 28534464 A C + 1 1 A>C A>C +AAGATAGCAATAACGA-1_8_83571894_A_T_- AAGATAGCAATAACGA-1 8 83571894 A T - 1 1 A>T T>A +AACCACAAGCTTTGTG-1_12_76798155_G_A_- AACCACAAGCTTTGTG-1 12 76798155 G A - 1 1 G>A C>T +AACAAAGAGCCGATTT-1_14_124454930_T_C_- AACAAAGAGCCGATTT-1 14 124454930 T C - 1 1 T>C A>G +AAATGGAGTTCTGACA-1_5_150497647_C_T_+ AAATGGAGTTCTGACA-1 5 150497647 C T + 1 1 C>T C>T +AACCAACTCTGCGATA-1_17_70963839_T_C_+ AACCAACTCTGCGATA-1 17 70963839 T C + 1 1 T>C T>C +AAGACTCAGAAGCTCG-1_7_131570493_G_A_+ AAGACTCAGAAGCTCG-1 7 131570493 G A + 1 1 G>A G>A +AAAGGGCCACTCAGAT-1_9_3000575_C_T_- AAAGGGCCACTCAGAT-1 9 3000575 C T - 1 1 C>T G>A +AAAGAACCAACTTCTT-1_11_101458507_A_G_+ AAAGAACCAACTTCTT-1 11 101458507 A G + 1 1 A>G A>G +AAACCCAGTGAGCGAT-1_MT_14964_T_C_+ AAACCCAGTGAGCGAT-1 MT 14964 T C + 1 1 T>C T>C +AACGTCAGTAGTCTGT-1_17_39848018_C_T_+ AACGTCAGTAGTCTGT-1 17 39848018 C T + 1 1 C>T C>T +AACCAACTCCCAAGCG-1_5_146261106_C_G_+ AACCAACTCCCAAGCG-1 5 146261106 C G + 1 1 C>G C>G +AAACGAATCTGGGCGT-1_17_39848100_A_T_+ AAACGAATCTGGGCGT-1 17 39848100 A T + 1 1 A>T A>T +AACCAACCAGTCGCTG-1_1_135156173_C_T_+ AACCAACCAGTCGCTG-1 1 135156173 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_10_62946403_C_T_+ AACCACAAGCTTTGTG-1 10 62946403 C T + 1 1 C>T C>T +AAAGGATTCATCTATC-1_3_8560459_C_T_+ AAAGGATTCATCTATC-1 3 8560459 C T + 1 1 C>T C>T +AAAGGTAAGACTTCAC-1_6_29800500_A_G_+ AAAGGTAAGACTTCAC-1 6 29800500 A G + 1 1 A>G A>G +AAACGCTCAGTAGGAC-1_1_38793734_G_A_- AAACGCTCAGTAGGAC-1 1 38793734 G A - 1 1 G>A C>T +AAGATAGCACGCGTGT-1_9_37545122_A_T_- AAGATAGCACGCGTGT-1 9 37545122 A T - 1 1 A>T T>A +AACACACCATCGTCCT-1_14_27440208_G_A_+ AACACACCATCGTCCT-1 14 27440208 G A + 1 1 G>A G>A +AAACGCTGTCAACACT-1_17_31091198_A_G_+ AAACGCTGTCAACACT-1 17 31091198 A G + 1 1 A>G A>G +AACCATGAGGTGCATG-1_9_121490005_G_A_- AACCATGAGGTGCATG-1 9 121490005 G A - 1 1 G>A C>T +AACGTCATCTGGCTGG-1_9_121490022_G_A_- AACGTCATCTGGCTGG-1 9 121490022 G A - 1 2 G>A C>T +AACGAAATCTTGAACG-1_9_75573851_T_C_- AACGAAATCTTGAACG-1 9 75573851 T C - 1 1 T>C A>G +AAATGGATCCCTTGTG-1_2_158384953_A_G_+ AAATGGATCCCTTGTG-1 2 158384953 A G + 1 1 A>G A>G +AACCACAGTCCAGAAG-1_13_29984251_T_G_- AACCACAGTCCAGAAG-1 13 29984251 T G - 1 1 T>G A>C +AAACGAAAGGTAGTCG-1_13_86045792_T_G_- AAACGAAAGGTAGTCG-1 13 86045792 T G - 1 1 T>G A>C +AAACGCTTCTGAGCAT-1_17_39848018_C_T_+ AAACGCTTCTGAGCAT-1 17 39848018 C T + 1 1 C>T C>T +AAACGCTAGGCCTGCT-1_11_117159080_C_G_+ AAACGCTAGGCCTGCT-1 11 117159080 C G + 1 1 C>G C>G +AAGATAGAGCTTGTGT-1_11_22831864_A_T_- AAGATAGAGCTTGTGT-1 11 22831864 A T - 1 1 A>T T>A +AACCACATCAAAGAAC-1_17_39847602_T_C_- AACCACATCAAAGAAC-1 17 39847602 T C - 1 1 T>C A>G +AAACGCTAGGTTACAA-1_10_5021125_T_C_- AAACGCTAGGTTACAA-1 10 5021125 T C - 1 1 T>C A>G +AAATGGATCCCTTGTG-1_13_51683844_A_C_+ AAATGGATCCCTTGTG-1 13 51683844 A C + 1 1 A>C A>C +AACAAGAAGCAATTAG-1_4_87064805_A_G_- AACAAGAAGCAATTAG-1 4 87064805 A G - 1 1 A>G T>C +AACGTCAAGCTGAAGC-1_5_146261080_C_A_+ AACGTCAAGCTGAAGC-1 5 146261080 C A + 1 1 C>A C>A +AACCACATCGGAGATG-1_13_51723198_G_C_- AACCACATCGGAGATG-1 13 51723198 G C - 1 1 G>C C>G +AAAGTCCCACCACATA-1_5_135031804_C_A_+ AAAGTCCCACCACATA-1 5 135031804 C A + 1 1 C>A C>A +AAATGGAAGCAGATAT-1_3_19260250_A_T_- AAATGGAAGCAGATAT-1 3 19260250 A T - 1 1 A>T T>A +AACTTCTCACTTCTCG-1_17_13015129_C_T_+ AACTTCTCACTTCTCG-1 17 13015129 C T + 1 1 C>T C>T +AACAACCAGACGACTG-1_17_39847193_C_A_+ AACAACCAGACGACTG-1 17 39847193 C A + 1 1 C>A C>A +AAAGGGCCAGCGCTTG-1_4_41191280_A_C_+ AAAGGGCCAGCGCTTG-1 4 41191280 A C + 1 1 A>C A>C +AACGAAACAATTCACG-1_10_83399962_G_A_+ AACGAAACAATTCACG-1 10 83399962 G A + 1 1 G>A G>A +AACCAACGTGATACAA-1_11_107469797_G_A_- AACCAACGTGATACAA-1 11 107469797 G A - 1 1 G>A C>T +AACGTCAAGCGAGGAG-1_9_114764806_A_G_- AACGTCAAGCGAGGAG-1 9 114764806 A G - 1 1 A>G T>C +AACCTTTCACACCTGG-1_11_58932421_G_A_- AACCTTTCACACCTGG-1 11 58932421 G A - 1 1 G>A C>T +AACCTGACATCGTCCT-1_10_93241222_C_T_+ AACCTGACATCGTCCT-1 10 93241222 C T + 1 1 C>T C>T +AACAAAGAGTGAGGCT-1_9_44410161_C_T_+ AACAAAGAGTGAGGCT-1 9 44410161 C T + 1 1 C>T C>T +AAACGAAAGGTAGTCG-1_2_177010853_A_T_+ AAACGAAAGGTAGTCG-1 2 177010853 A T + 1 1 A>T A>T +AAGACAAGTCGAATTC-1_9_45965422_G_A_- AAGACAAGTCGAATTC-1 9 45965422 G A - 1 1 G>A C>T +AAAGAACGTGGACTGA-1_17_56613947_G_A_+ AAAGAACGTGGACTGA-1 17 56613947 G A + 1 1 G>A G>A +AACCTTTAGACCAGAC-1_14_79481005_T_C_- AACCTTTAGACCAGAC-1 14 79481005 T C - 1 1 T>C A>G +AACCACAGTCTACAAC-1_9_95733944_A_G_- AACCACAGTCTACAAC-1 9 95733944 A G - 1 1 A>G T>C +AAAGTGACACATATGC-1_2_180257437_C_T_+ AAAGTGACACATATGC-1 2 180257437 C T + 1 1 C>T C>T +AAAGTCCGTGCTCCGA-1_4_32827178_T_C_- AAAGTCCGTGCTCCGA-1 4 32827178 T C - 1 1 T>C A>G +AACCCAACATGGACAG-1_MT_9559_C_A_+ AACCCAACATGGACAG-1 MT 9559 C A + 1 1 C>A C>A +AAGAACAGTTGCTCCT-1_4_116990349_C_A_- AAGAACAGTTGCTCCT-1 4 116990349 C A - 1 1 C>A G>T +AAAGGTACATGTGTCA-1_17_39846189_A_G_+ AAAGGTACATGTGTCA-1 17 39846189 A G + 1 1 A>G A>G +AACTTCTCAGGACTTT-1_4_101625976_T_A_+ AACTTCTCAGGACTTT-1 4 101625976 T A + 1 1 T>A T>A +AAGACTCCAACACAGG-1_18_34347016_C_T_- AAGACTCCAACACAGG-1 18 34347016 C T - 1 1 C>T G>A +AAGACTCGTCCACATA-1_16_57391685_G_A_- AAGACTCGTCCACATA-1 16 57391685 G A - 1 1 G>A C>T +AAGAACAGTTGCAAGG-1_2_29931692_C_T_+ AAGAACAGTTGCAAGG-1 2 29931692 C T + 1 1 C>T C>T +AACCAACAGAGGACTC-1_10_83737922_A_T_+ AACCAACAGAGGACTC-1 10 83737922 A T + 1 1 A>T A>T +AAAGTGAAGACATAAC-1_13_54551508_G_A_- AAAGTGAAGACATAAC-1 13 54551508 G A - 1 1 G>A C>T +AAAGGATGTCCTGGTG-1_6_13084963_C_T_+ AAAGGATGTCCTGGTG-1 6 13084963 C T + 1 1 C>T C>T +AAACGCTGTCAACACT-1_1_180802690_G_A_- AAACGCTGTCAACACT-1 1 180802690 G A - 1 1 G>A C>T +AACCAACAGCCAAGGT-1_9_3035203_G_A_- AACCAACAGCCAAGGT-1 9 3035203 G A - 1 1 G>A C>T +AACCACATCCTAGCTC-1_5_131096252_A_T_- AACCACATCCTAGCTC-1 5 131096252 A T - 1 1 A>T T>A +AACCTTTCAGACCTGC-1_3_88552232_C_T_- AACCTTTCAGACCTGC-1 3 88552232 C T - 1 1 C>T G>A +AAATGGATCGTAGGAG-1_4_151061766_G_A_- AAATGGATCGTAGGAG-1 4 151061766 G A - 1 1 G>A C>T +AACACACGTCCCACGA-1_11_29742711_C_T_+ AACACACGTCCCACGA-1 11 29742711 C T + 1 1 C>T C>T +AACGAAAAGCTAAACA-1_13_110400822_C_T_+ AACGAAAAGCTAAACA-1 13 110400822 C T + 1 1 C>T C>T +AACGGGATCAGGAACG-1_14_38369095_G_A_- AACGGGATCAGGAACG-1 14 38369095 G A - 1 1 G>A C>T +AAAGGATGTACCATAC-1_9_42964044_G_A_- AAAGGATGTACCATAC-1 9 42964044 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_8_94067804_C_T_+ AAACGCTCAGTAGGAC-1 8 94067804 C T + 1 1 C>T C>T +AACGAAATCCTGTAAG-1_6_124858716_T_G_- AACGAAATCCTGTAAG-1 6 124858716 T G - 1 1 T>G A>C +AAACCCACAGTTCTAG-1_13_25252249_G_A_- AAACCCACAGTTCTAG-1 13 25252249 G A - 1 1 G>A C>T +AACGGGATCAGGAACG-1_3_80705362_G_T_- AACGGGATCAGGAACG-1 3 80705362 G T - 1 1 G>T C>A +AAGACTCAGGAATTAC-1_10_123714175_C_T_+ AAGACTCAGGAATTAC-1 10 123714175 C T + 1 1 C>T C>T +AACCAACTCCCTCATG-1_10_81262866_C_A_+ AACCAACTCCCTCATG-1 10 81262866 C A + 1 1 C>A C>A +AACTTCTAGCCTAACT-1_11_61738213_T_C_- AACTTCTAGCCTAACT-1 11 61738213 T C - 1 1 T>C A>G +AAACCCAGTACGGGAT-1_10_77988138_C_G_- AAACCCAGTACGGGAT-1 10 77988138 C G - 1 1 C>G G>C +AAAGAACTCATTACTC-1_11_50200220_G_A_- AAAGAACTCATTACTC-1 11 50200220 G A - 1 1 G>A C>T +AAATGGAAGTTTCGGT-1_16_42181425_T_C_+ AAATGGAAGTTTCGGT-1 16 42181425 T C + 1 1 T>C T>C +AAAGTCCCAACCAGAG-1_16_57391688_T_G_- AAAGTCCCAACCAGAG-1 16 57391688 T G - 1 1 T>G A>C +AACCAACGTTCTAAGC-1_5_62609274_A_C_- AACCAACGTTCTAAGC-1 5 62609274 A C - 1 1 A>C T>G +AAACGCTGTCAACACT-1_2_77016734_T_C_- AAACGCTGTCAACACT-1 2 77016734 T C - 1 1 T>C A>G +AACCTGACATCGTCCT-1_14_103080865_G_A_- AACCTGACATCGTCCT-1 14 103080865 G A - 1 1 G>A C>T +AACCACAAGTGATAGT-1_1_55091219_C_T_+ AACCACAAGTGATAGT-1 1 55091219 C T + 1 1 C>T C>T +AAAGTCCAGAGTTGAT-1_17_24724195_A_C_- AAAGTCCAGAGTTGAT-1 17 24724195 A C - 1 1 A>C T>G +AAAGGATAGGTTCCAT-1_17_39847607_T_C_+ AAAGGATAGGTTCCAT-1 17 39847607 T C + 1 1 T>C T>C +AACCATGCATTGCCTC-1_17_39847435_A_G_- AACCATGCATTGCCTC-1 17 39847435 A G - 1 1 A>G T>C +AACGTCAAGCTAAACA-1_12_40524618_T_A_+ AACGTCAAGCTAAACA-1 12 40524618 T A + 1 1 T>A T>A +AAAGGTATCTTTGCGC-1_4_95049489_C_G_- AAAGGTATCTTTGCGC-1 4 95049489 C G - 1 1 C>G G>C +AAGACAATCTCTATAC-1_9_3006491_T_C_+ AAGACAATCTCTATAC-1 9 3006491 T C + 1 1 T>C T>C +AACCAACCACGGTAGA-1_17_39844684_C_G_+ AACCAACCACGGTAGA-1 17 39844684 C G + 1 1 C>G C>G +AAATGGACAAGCGCAA-1_19_60762077_G_A_- AAATGGACAAGCGCAA-1 19 60762077 G A - 1 1 G>A C>T +AACAACCTCTTTCAGT-1_2_148871826_G_A_- AACAACCTCTTTCAGT-1 2 148871826 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_X_10596423_C_T_+ AAACGCTCAGTAGGAC-1 X 10596423 C T + 1 1 C>T C>T +AACGTCACAAGAATGT-1_7_123193753_A_C_+ AACGTCACAAGAATGT-1 7 123193753 A C + 1 1 A>C A>C +AAAGTCCAGTGGGAAA-1_5_124119984_G_A_- AAAGTCCAGTGGGAAA-1 5 124119984 G A - 1 1 G>A C>T +AACGTCATCTATACGG-1_1_84370535_G_A_- AACGTCATCTATACGG-1 1 84370535 G A - 1 1 G>A C>T +AACGTCACACTCCTTG-1_19_44073560_T_A_- AACGTCACACTCCTTG-1 19 44073560 T A - 1 1 T>A A>T +AACCTTTCACACCTGG-1_19_5802653_T_A_- AACCTTTCACACCTGG-1 19 5802653 T A - 1 3 T>A A>T +AACAGGGCAAATCCCA-1_15_92340738_T_C_+ AACAGGGCAAATCCCA-1 15 92340738 T C + 1 1 T>C T>C +AAAGAACAGCCTGAAG-1_14_31373935_G_A_- AAAGAACAGCCTGAAG-1 14 31373935 G A - 1 1 G>A C>T +AACCTGATCGCTCATC-1_12_38047227_A_G_- AACCTGATCGCTCATC-1 12 38047227 A G - 1 1 A>G T>C +AACTTCTAGAGACAAG-1_18_45685573_G_A_+ AACTTCTAGAGACAAG-1 18 45685573 G A + 1 1 G>A G>A +AACAAAGCAATCAGCT-1_8_64592686_C_T_- AACAAAGCAATCAGCT-1 8 64592686 C T - 1 1 C>T G>A +AAACGCTGTGGGTTGA-1_17_39847607_T_C_- AAACGCTGTGGGTTGA-1 17 39847607 T C - 1 1 T>C A>G +AACCCAATCTTGCAAG-1_17_24721696_C_T_+ AACCCAATCTTGCAAG-1 17 24721696 C T + 1 1 C>T C>T +AAACCCATCGGATAAA-1_7_105558604_G_C_- AAACCCATCGGATAAA-1 7 105558604 G C - 1 1 G>C C>G +AACGGGAGTGACTAAA-1_13_20564558_C_T_+ AACGGGAGTGACTAAA-1 13 20564558 C T + 1 1 C>T C>T +AAACCCACACCGTGGT-1_MT_6761_A_G_+ AAACCCACACCGTGGT-1 MT 6761 A G + 1 4 A>G A>G +AACAAGAGTAGTCTTG-1_2_42189633_C_T_- AACAAGAGTAGTCTTG-1 2 42189633 C T - 1 1 C>T G>A +AACCAACCAGATCCAT-1_2_69710034_G_A_- AACCAACCAGATCCAT-1 2 69710034 G A - 1 1 G>A C>T +AACACACCAGAGGCTA-1_5_89057304_A_G_+ AACACACCAGAGGCTA-1 5 89057304 A G + 1 1 A>G A>G +AACCAACGTTTCGTGA-1_10_32571549_G_A_- AACCAACGTTTCGTGA-1 10 32571549 G A - 1 1 G>A C>T +AAGAACAGTCGGCTAC-1_19_7198307_G_A_- AAGAACAGTCGGCTAC-1 19 7198307 G A - 1 1 G>A C>T +AAACGAAAGTGGACTG-1_17_83512042_C_T_- AAACGAAAGTGGACTG-1 17 83512042 C T - 1 1 C>T G>A +AAACGCTCAGTAGGAC-1_X_10596432_C_T_+ AAACGCTCAGTAGGAC-1 X 10596432 C T + 1 1 C>T C>T +AAGATAGCACGCGTGT-1_5_25796276_G_T_+ AAGATAGCACGCGTGT-1 5 25796276 G T + 1 1 G>T G>T AACACACTCTGCGGAC-1_19_41941369_A_G_- AACACACTCTGCGGAC-1 19 41941369 A G - 1 1 A>G T>C -AAAGTCCAGTCGGCCT-1_19_9984909_C_T_+ AAAGTCCAGTCGGCCT-1 19 9984909 C T + 1 3 C>T C>T -AAATGGATCGCCCAGA-1_19_9984670_C_T_+ AAATGGATCGCCCAGA-1 19 9984670 C T + 1 1 C>T C>T +AACGTCACACTCCTTG-1_11_106066822_C_T_+ AACGTCACACTCCTTG-1 11 106066822 C T + 1 1 C>T C>T +AACCACAGTTAGAGTA-1_17_90935281_A_G_- AACCACAGTTAGAGTA-1 17 90935281 A G - 1 1 A>G T>C +AACGGGAAGTTGCCCG-1_7_3401366_A_G_+ AACGGGAAGTTGCCCG-1 7 3401366 A G + 1 1 A>G A>G +AAAGAACCAGCAAGAC-1_13_49205221_T_C_- AAAGAACCAGCAAGAC-1 13 49205221 T C - 1 1 T>C A>G +AAAGTCCCATGTGGCC-1_16_44086510_A_C_- AAAGTCCCATGTGGCC-1 16 44086510 A C - 1 1 A>C T>G +AACCAACCAGTCTTCC-1_9_3028837_G_A_- AACCAACCAGTCTTCC-1 9 3028837 G A - 1 1 G>A C>T +AAACCCAAGATTGCGG-1_11_5969957_A_C_- AAACCCAAGATTGCGG-1 11 5969957 A C - 1 1 A>C T>G +AAAGGATAGTCCTGTA-1_17_39847435_A_G_- AAAGGATAGTCCTGTA-1 17 39847435 A G - 1 1 A>G T>C +AAAGAACAGCGTATAA-1_8_13020497_C_A_+ AAAGAACAGCGTATAA-1 8 13020497 C A + 1 1 C>A C>A +AACTTCTCACTAACGT-1_6_86979712_A_G_+ AACTTCTCACTAACGT-1 6 86979712 A G + 1 1 A>G A>G +AAATGGATCTGCGGCA-1_14_66987269_T_C_- AAATGGATCTGCGGCA-1 14 66987269 T C - 1 1 T>C A>G +AAACGCTGTCATGGCC-1_5_136150615_G_A_- AAACGCTGTCATGGCC-1 5 136150615 G A - 1 1 G>A C>T +AAAGAACAGCCTGAAG-1_3_136937503_C_A_+ AAAGAACAGCCTGAAG-1 3 136937503 C A + 1 1 C>A C>A +AAGACTCGTGGTACAG-1_17_24721049_A_T_+ AAGACTCGTGGTACAG-1 17 24721049 A T + 1 1 A>T A>T +AAAGGGCCAACCAATC-1_X_109162400_C_T_+ AAAGGGCCAACCAATC-1 X 109162400 C T + 1 1 C>T C>T +AAAGGATAGTCCTGTA-1_9_59718783_C_T_+ AAAGGATAGTCCTGTA-1 9 59718783 C T + 1 1 C>T C>T +AACAACCGTTGCAACT-1_10_3946262_A_G_+ AACAACCGTTGCAACT-1 10 3946262 A G + 1 1 A>G A>G +AAACCCACATCACCAA-1_12_99645645_A_G_+ AAACCCACATCACCAA-1 12 99645645 A G + 1 1 A>G A>G +AACACACAGTGCACAG-1_9_70554661_T_C_+ AACACACAGTGCACAG-1 9 70554661 T C + 1 1 T>C T>C +AAACGCTCATTCACCC-1_9_72743589_T_A_+ AAACGCTCATTCACCC-1 9 72743589 T A + 1 1 T>A T>A +AACGTCATCTACTTCA-1_9_3027206_C_T_- AACGTCATCTACTTCA-1 9 3027206 C T - 1 1 C>T G>A +AAGACTCGTGGTACAG-1_12_84918543_G_A_- AAGACTCGTGGTACAG-1 12 84918543 G A - 1 1 G>A C>T +AACCCAACACTGTTCC-1_17_70528788_G_A_+ AACCCAACACTGTTCC-1 17 70528788 G A + 1 1 G>A G>A +AACCATGAGACGAAGA-1_17_39848018_C_T_+ AACCATGAGACGAAGA-1 17 39848018 C T + 1 1 C>T C>T +AAAGTCCAGTCGGCCT-1_11_98768870_C_T_+ AAAGTCCAGTCGGCCT-1 11 98768870 C T + 1 1 C>T C>T +AAACGAACAGCTTCGG-1_11_87035637_C_A_- AAACGAACAGCTTCGG-1 11 87035637 C A - 1 1 C>A G>T +AACCATGAGGTGCATG-1_5_81239049_C_T_+ AACCATGAGGTGCATG-1 5 81239049 C T + 1 1 C>T C>T +AAACCCACAATCTCTT-1_9_37545289_T_G_- AAACCCACAATCTCTT-1 9 37545289 T G - 1 1 T>G A>C +AAACGCTAGCCTCTCT-1_10_88743895_C_T_+ AAACGCTAGCCTCTCT-1 10 88743895 C T + 1 1 C>T C>T +AAACCCACATTCTTCA-1_9_3037729_T_A_- AAACCCACATTCTTCA-1 9 3037729 T A - 1 1 T>A A>T +AAATGGATCTGCGGCA-1_17_65945096_A_T_- AAATGGATCTGCGGCA-1 17 65945096 A T - 1 1 A>T T>A +AACTTCTCACTAACGT-1_6_13870195_C_A_- AACTTCTCACTAACGT-1 6 13870195 C A - 1 1 C>A G>T +AACGAAAAGTGATAAC-1_5_129881278_C_A_- AACGAAAAGTGATAAC-1 5 129881278 C A - 1 1 C>A G>T +AAAGGTAGTAACAGTA-1_12_108106870_A_G_- AAAGGTAGTAACAGTA-1 12 108106870 A G - 1 1 A>G T>C +AACTTCTCATGAATAG-1_8_94154082_C_G_+ AACTTCTCATGAATAG-1 8 94154082 C G + 1 1 C>G C>G +AAATGGATCCCTTGTG-1_14_122492067_G_C_+ AAATGGATCCCTTGTG-1 14 122492067 G C + 1 1 G>C G>C +AACTTCTAGAGTCCGA-1_5_130246378_C_T_- AACTTCTAGAGTCCGA-1 5 130246378 C T - 1 1 C>T G>A +AAGATAGCATGGGAAC-1_5_125017391_A_G_- AAGATAGCATGGGAAC-1 5 125017391 A G - 1 1 A>G T>C +AAGACTCGTGGTACAG-1_17_24721040_T_C_+ AAGACTCGTGGTACAG-1 17 24721040 T C + 1 1 T>C T>C +AAACGAAAGTCGCGAA-1_5_52860715_T_G_+ AAACGAAAGTCGCGAA-1 5 52860715 T G + 1 1 T>G T>G +AAAGTCCGTGACTGTT-1_7_87945957_A_G_+ AAAGTCCGTGACTGTT-1 7 87945957 A G + 1 1 A>G A>G +AAACGCTGTCATGGCC-1_1_22705184_C_G_- AAACGCTGTCATGGCC-1 1 22705184 C G - 1 1 C>G G>C +AAACGCTTCTCCTGCA-1_11_107489025_C_T_+ AAACGCTTCTCCTGCA-1 11 107489025 C T + 1 1 C>T C>T +AAATGGAGTGAAGCTG-1_3_129983257_G_A_- AAATGGAGTGAAGCTG-1 3 129983257 G A - 1 1 G>A C>T +AACCAACCAGTCGCTG-1_X_10596379_C_T_+ AACCAACCAGTCGCTG-1 X 10596379 C T + 1 1 C>T C>T +AACGAAAAGGTGATAT-1_17_39848017_G_C_+ AACGAAAAGGTGATAT-1 17 39848017 G C + 1 1 G>C G>C +AACCTTTTCAGTCAGT-1_9_3020006_C_A_- AACCTTTTCAGTCAGT-1 9 3020006 C A - 1 1 C>A G>T +AAACGCTTCTCCTGCA-1_6_87999673_G_A_- AAACGCTTCTCCTGCA-1 6 87999673 G A - 1 1 G>A C>T +AAACCCACAGATTAAG-1_11_98209245_C_T_+ AAACCCACAGATTAAG-1 11 98209245 C T + 1 1 C>T C>T +AAATGGACATGCCGAC-1_9_123461940_T_G_+ AAATGGACATGCCGAC-1 9 123461940 T G + 1 1 T>G T>G +AACCTTTCAACTGAAA-1_9_35124500_A_G_- AACCTTTCAACTGAAA-1 9 35124500 A G - 1 1 A>G T>C +AACCTGATCGCTCATC-1_11_36564718_G_T_- AACCTGATCGCTCATC-1 11 36564718 G T - 1 1 G>T C>A +AACCTTTAGGGTATAT-1_5_49307894_C_T_- AACCTTTAGGGTATAT-1 5 49307894 C T - 1 1 C>T G>A +AACTTCTCACTAACGT-1_19_5802648_T_G_- AACTTCTCACTAACGT-1 19 5802648 T G - 1 6 T>G A>C +AACACACAGATGGCAC-1_17_39847435_A_G_- AACACACAGATGGCAC-1 17 39847435 A G - 1 1 A>G T>C +AACAACCCACACACGC-1_6_6558387_G_A_- AACAACCCACACACGC-1 6 6558387 G A - 1 1 G>A C>T +AACCTGAAGAGTAACT-1_5_142904179_T_C_- AACCTGAAGAGTAACT-1 5 142904179 T C - 1 1 T>C A>G +AACCCAAAGCGATCGA-1_10_10551923_A_T_- AACCCAAAGCGATCGA-1 10 10551923 A T - 1 1 A>T T>A +AAGATAGGTCATCAGT-1_17_24722215_C_T_- AAGATAGGTCATCAGT-1 17 24722215 C T - 1 1 C>T G>A +AACAACCCACACACGC-1_14_64170583_G_T_- AACAACCCACACACGC-1 14 64170583 G T - 1 1 G>T C>A +AAGACTCTCGAGTACT-1_17_39847403_T_G_+ AAGACTCTCGAGTACT-1 17 39847403 T G + 1 1 T>G T>G +AACCCAAAGTTCATGC-1_3_136935750_C_T_+ AACCCAAAGTTCATGC-1 3 136935750 C T + 1 1 C>T C>T +AAAGAACCAACACGAG-1_11_116079242_C_A_- AAAGAACCAACACGAG-1 11 116079242 C A - 1 1 C>A G>T +AAGACAATCTTAGGAC-1_9_78480658_T_C_- AAGACAATCTTAGGAC-1 9 78480658 T C - 1 1 T>C A>G +AAAGGTACAGGACAGT-1_17_56642845_C_G_+ AAAGGTACAGGACAGT-1 17 56642845 C G + 1 1 C>G C>G +AACAAGATCGGATAAA-1_8_95434633_G_A_- AACAAGATCGGATAAA-1 8 95434633 G A - 1 1 G>A C>T +AACGAAACATCTCAAG-1_2_103981549_C_T_+ AACGAAACATCTCAAG-1 2 103981549 C T + 1 1 C>T C>T +AACCCAAGTATCGATC-1_4_150501296_A_G_+ AACCCAAGTATCGATC-1 4 150501296 A G + 1 1 A>G A>G +AAAGGTACAAATTGCC-1_13_44869614_A_G_+ AAAGGTACAAATTGCC-1 13 44869614 A G + 1 1 A>G A>G +AAGATAGGTCTCACAA-1_16_57391677_C_G_- AAGATAGGTCTCACAA-1 16 57391677 C G - 1 1 C>G G>C +AAACCCAGTGGTAATA-1_1_161241034_G_A_- AAACCCAGTGGTAATA-1 1 161241034 G A - 1 1 G>A C>T +AACCCAAAGAATTGTG-1_12_29732477_C_T_+ AACCCAAAGAATTGTG-1 12 29732477 C T + 1 1 C>T C>T +AAAGAACAGTCGCGAA-1_11_36628771_A_G_- AAAGAACAGTCGCGAA-1 11 36628771 A G - 1 1 A>G T>C +AACAAGAAGTAAACTG-1_9_3035172_C_T_- AACAAGAAGTAAACTG-1 9 3035172 C T - 1 1 C>T G>A +AAGATAGGTCATCAGT-1_18_72253305_T_C_- AAGATAGGTCATCAGT-1 18 72253305 T C - 1 1 T>C A>G +AACCTTTTCCTCATAT-1_17_39848018_C_T_+ AACCTTTTCCTCATAT-1 17 39848018 C T + 1 1 C>T C>T +AAGATAGAGGGTACGT-1_9_3025578_A_C_- AAGATAGAGGGTACGT-1 9 3025578 A C - 1 1 A>C T>G +AAAGGGCCACTTCAAG-1_1_162672490_T_A_- AAAGGGCCACTTCAAG-1 1 162672490 T A - 1 1 T>A A>T +AAGAACACACTAGGTT-1_7_141429839_G_A_- AAGAACACACTAGGTT-1 7 141429839 G A - 1 1 G>A C>T +AAAGGGCTCTGCTAGA-1_5_135217988_C_T_+ AAAGGGCTCTGCTAGA-1 5 135217988 C T + 1 1 C>T C>T +AACACACAGATGGCAC-1_10_81565508_G_A_+ AACACACAGATGGCAC-1 10 81565508 G A + 1 1 G>A G>A +AAAGGGCCACACTTAG-1_9_57023880_A_C_+ AAAGGGCCACACTTAG-1 9 57023880 A C + 1 1 A>C A>C +AACCAACTCGGCACTG-1_12_99645645_A_G_+ AACCAACTCGGCACTG-1 12 99645645 A G + 1 1 A>G A>G +AACCAACAGCGAAACC-1_6_65688020_C_T_+ AACCAACAGCGAAACC-1 6 65688020 C T + 1 1 C>T C>T +AACCAACGTTTCGTGA-1_15_68930820_A_G_+ AACCAACGTTTCGTGA-1 15 68930820 A G + 1 1 A>G A>G +AACGGGAGTTTGGCTA-1_13_99421650_G_A_- AACGGGAGTTTGGCTA-1 13 99421650 G A - 1 1 G>A C>T +AAAGGATAGTCCTGTA-1_8_111719497_G_T_- AAAGGATAGTCCTGTA-1 8 111719497 G T - 1 1 G>T C>A +AACAAAGAGCAATAGT-1_17_33966176_T_A_+ AACAAAGAGCAATAGT-1 17 33966176 T A + 1 1 T>A T>A +AACTTCTAGATACGAT-1_12_32976523_C_G_+ AACTTCTAGATACGAT-1 12 32976523 C G + 1 1 C>G C>G +AAAGAACTCTCACCCA-1_18_46772854_G_T_+ AAAGAACTCTCACCCA-1 18 46772854 G T + 1 1 G>T G>T +AACCTTTCAGACCTGC-1_8_107019416_G_T_+ AACCTTTCAGACCTGC-1 8 107019416 G T + 1 1 G>T G>T +AACAGGGCAAACTCGT-1_4_87969785_A_G_- AACAGGGCAAACTCGT-1 4 87969785 A G - 1 1 A>G T>C +AAAGTCCGTGACTGTT-1_7_97712668_C_T_+ AAAGTCCGTGACTGTT-1 7 97712668 C T + 1 1 C>T C>T +AAGAACAAGCTCGACC-1_8_121881296_A_C_- AAGAACAAGCTCGACC-1 8 121881296 A C - 1 1 A>C T>G +AACCCAAAGAATTGTG-1_12_29732482_G_A_+ AACCCAAAGAATTGTG-1 12 29732482 G A + 1 1 G>A G>A +AACACACCAGGACAGT-1_6_17666503_C_T_+ AACACACCAGGACAGT-1 6 17666503 C T + 1 1 C>T C>T +AAAGTGATCGTCGGGT-1_17_39847403_T_G_+ AAAGTGATCGTCGGGT-1 17 39847403 T G + 1 1 T>G T>G +AACTTCTAGGGCTAAC-1_17_39848018_C_T_+ AACTTCTAGGGCTAAC-1 17 39848018 C T + 1 1 C>T C>T +AACGTCACACTCCTTG-1_16_40539576_A_G_+ AACGTCACACTCCTTG-1 16 40539576 A G + 1 1 A>G A>G +AACAACCAGTAATACG-1_10_60302407_C_T_+ AACAACCAGTAATACG-1 10 60302407 C T + 1 1 C>T C>T +AAAGTCCGTGAGTAAT-1_17_39847435_A_G_- AAAGTCCGTGAGTAAT-1 17 39847435 A G - 1 1 A>G T>C +AAACCCAGTAGGACTG-1_4_118137182_A_G_- AAACCCAGTAGGACTG-1 4 118137182 A G - 1 1 A>G T>C +AAACGCTAGGTTACAA-1_8_120673327_C_T_+ AAACGCTAGGTTACAA-1 8 120673327 C T + 1 1 C>T C>T +AACAACCCACACACGC-1_5_73313849_A_C_+ AACAACCCACACACGC-1 5 73313849 A C + 1 1 A>C A>C +AACCTTTCATTGAAAG-1_8_46207431_A_C_- AACCTTTCATTGAAAG-1 8 46207431 A C - 1 1 A>C T>G +AACGTCACACGAGGTA-1_6_72385500_G_A_- AACGTCACACGAGGTA-1 6 72385500 G A - 1 1 G>A C>T +AAAGTCCAGTCGGCCT-1_X_7653106_C_T_+ AAAGTCCAGTCGGCCT-1 X 7653106 C T + 1 1 C>T C>T +AAAGGGCCAGTTGCGC-1_11_87184950_A_G_+ AAAGGGCCAGTTGCGC-1 11 87184950 A G + 1 1 A>G A>G +AACGAAACATCTCAAG-1_2_103981554_T_C_+ AACGAAACATCTCAAG-1 2 103981554 T C + 1 1 T>C T>C +AACCCAAAGTTCTACG-1_17_39848110_T_C_+ AACCCAAAGTTCTACG-1 17 39848110 T C + 1 1 T>C T>C +AACCAACGTCACCCTT-1_10_75896801_T_C_- AACCAACGTCACCCTT-1 10 75896801 T C - 1 1 T>C A>G +AACGTCACATAGATGA-1_18_77782380_T_C_+ AACGTCACATAGATGA-1 18 77782380 T C + 1 1 T>C T>C +AAAGAACGTCTGTGTA-1_X_7922969_C_A_+ AAAGAACGTCTGTGTA-1 X 7922969 C A + 1 1 C>A C>A +AACAAGATCTGCTTTA-1_11_83214682_T_A_+ AACAAGATCTGCTTTA-1 11 83214682 T A + 1 1 T>A T>A +AAAGTGATCGTCGGGT-1_9_78478591_T_G_- AAAGTGATCGTCGGGT-1 9 78478591 T G - 1 1 T>G A>C +AACCTGATCGTGCTCT-1_7_88115247_T_A_+ AACCTGATCGTGCTCT-1 7 88115247 T A + 1 1 T>A T>A +AAGATAGCACGCGTGT-1_11_93958995_C_T_- AAGATAGCACGCGTGT-1 11 93958995 C T - 1 1 C>T G>A +AAAGGATCACGACAGA-1_19_9984972_C_T_+ AAAGGATCACGACAGA-1 19 9984972 C T + 1 1 C>T C>T +AACAACCAGATTGAGT-1_17_39848018_C_T_+ AACAACCAGATTGAGT-1 17 39848018 C T + 2 2 C>T C>T +AACTTCTAGTGATGGC-1_1_68907594_T_A_- AACTTCTAGTGATGGC-1 1 68907594 T A - 1 1 T>A A>T +AACCACAGTGAGCAGT-1_17_39847778_C_T_+ AACCACAGTGAGCAGT-1 17 39847778 C T + 1 1 C>T C>T +AACGGGATCTTCCCGA-1_5_146261113_T_C_+ AACGGGATCTTCCCGA-1 5 146261113 T C + 1 1 T>C T>C +AAAGGTACAGGACAGT-1_14_24493459_G_A_+ AAAGGTACAGGACAGT-1 14 24493459 G A + 1 1 G>A G>A +AACGAAAAGCCTCTTC-1_17_39848018_C_T_+ AACGAAAAGCCTCTTC-1 17 39848018 C T + 1 1 C>T C>T +AAACCCATCACCTTAT-1_16_57391454_T_C_- AAACCCATCACCTTAT-1 16 57391454 T C - 1 1 T>C A>G +AACAGGGCAAACTCGT-1_X_136838218_T_A_+ AACAGGGCAAACTCGT-1 X 136838218 T A + 1 3 T>A T>A +AACCACAGTCTACAAC-1_10_81204693_G_A_- AACCACAGTCTACAAC-1 10 81204693 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_5_36954835_C_T_+ AAACGCTCAGTAGGAC-1 5 36954835 C T + 1 1 C>T C>T +AAAGTCCAGATAGGGA-1_5_146261004_G_C_+ AAAGTCCAGATAGGGA-1 5 146261004 G C + 1 1 G>C G>C +AACCTGAGTCGATTAC-1_3_8937593_G_A_- AACCTGAGTCGATTAC-1 3 8937593 G A - 1 1 G>A C>T +AACCAACAGGTCACTT-1_16_66656531_C_T_- AACCAACAGGTCACTT-1 16 66656531 C T - 1 1 C>T G>A +AAGAACAAGACTACGG-1_17_39847318_G_T_+ AAGAACAAGACTACGG-1 17 39847318 G T + 1 1 G>T G>T +AACCACACAATAGTAG-1_12_11325375_G_A_- AACCACACAATAGTAG-1 12 11325375 G A - 1 1 G>A C>T +AAAGTCCGTGTTCAGT-1_10_128677359_G_T_- AAAGTCCGTGTTCAGT-1 10 128677359 G T - 1 1 G>T C>A +AAAGGTAGTACACGCC-1_17_39847435_A_G_- AAAGGTAGTACACGCC-1 17 39847435 A G - 1 1 A>G T>C +AAAGGTACAGTCTCTC-1_17_39847458_A_G_+ AAAGGTACAGTCTCTC-1 17 39847458 A G + 1 1 A>G A>G +AACGGGAGTAGCACGA-1_7_112905708_C_T_+ AACGGGAGTAGCACGA-1 7 112905708 C T + 1 1 C>T C>T +AACCTGATCGAGAAAT-1_11_76346191_G_A_- AACCTGATCGAGAAAT-1 11 76346191 G A - 1 1 G>A C>T +AACGAAATCCGTCAAA-1_17_39847435_A_G_+ AACGAAATCCGTCAAA-1 17 39847435 A G + 1 1 A>G A>G +AAACGAACAAGATTGA-1_2_150633079_C_T_- AAACGAACAAGATTGA-1 2 150633079 C T - 1 1 C>T G>A +AAGACTCGTCAAGTTC-1_5_37040952_G_A_- AAGACTCGTCAAGTTC-1 5 37040952 G A - 1 1 G>A C>T +AAGACTCGTCAAGTTC-1_MT_4733_A_G_+ AAGACTCGTCAAGTTC-1 MT 4733 A G + 1 1 A>G A>G +AAATGGAAGTTTCGGT-1_16_42181382_C_T_+ AAATGGAAGTTTCGGT-1 16 42181382 C T + 1 1 C>T C>T +AAGACAAAGAGTTCGG-1_3_55470001_C_A_+ AAGACAAAGAGTTCGG-1 3 55470001 C A + 1 1 C>A C>A +AAGAACAAGAGCCCAA-1_1_7159164_A_G_+ AAGAACAAGAGCCCAA-1 1 7159164 A G + 1 1 A>G A>G +AAAGAACTCGTCCTCA-1_3_89782494_C_T_+ AAAGAACTCGTCCTCA-1 3 89782494 C T + 1 1 C>T C>T +AAGACTCGTTGCTCGG-1_1_127491084_A_G_- AAGACTCGTTGCTCGG-1 1 127491084 A G - 1 1 A>G T>C +AACGTCACACAATGCT-1_17_56892695_C_G_- AACGTCACACAATGCT-1 17 56892695 C G - 1 1 C>G G>C +AACACACAGTGCACAG-1_17_39843367_G_C_+ AACACACAGTGCACAG-1 17 39843367 G C + 1 1 G>C G>C +AACACACCAGACCAGA-1_15_99934298_C_T_+ AACACACCAGACCAGA-1 15 99934298 C T + 1 1 C>T C>T +AAACGAAGTTCATCTT-1_9_78480000_G_T_- AAACGAAGTTCATCTT-1 9 78480000 G T - 1 1 G>T C>A +AAACGAAGTTCATCTT-1_7_103826659_G_A_- AAACGAAGTTCATCTT-1 7 103826659 G A - 1 10 G>A C>T +AAAGTCCAGTCGGCCT-1_MT_7614_G_A_+ AAAGTCCAGTCGGCCT-1 MT 7614 G A + 1 1 G>A G>A +AACAAAGGTGTAGTGG-1_16_57391683_T_A_- AACAAAGGTGTAGTGG-1 16 57391683 T A - 2 2 T>A A>T +AAAGAACTCGTGGGAA-1_8_94179846_T_A_+ AAAGAACTCGTGGGAA-1 8 94179846 T A + 1 1 T>A T>A +AAGACAAAGAGTTCGG-1_12_8938459_T_C_+ AAGACAAAGAGTTCGG-1 12 8938459 T C + 1 1 T>C T>C +AAATGGAAGCAGATAT-1_16_59978413_A_C_- AAATGGAAGCAGATAT-1 16 59978413 A C - 1 1 A>C T>G +AACCAACGTAGGTAGC-1_17_39848100_A_T_+ AACCAACGTAGGTAGC-1 17 39848100 A T + 1 1 A>T A>T +AAGAACAGTTCGGTTA-1_4_154872840_C_G_+ AAGAACAGTTCGGTTA-1 4 154872840 C G + 1 1 C>G C>G +AACCAACAGCGAAACC-1_17_39848018_C_T_+ AACCAACAGCGAAACC-1 17 39848018 C T + 1 1 C>T C>T +AACGGGAGTCAGGCAA-1_7_19696535_G_T_- AACGGGAGTCAGGCAA-1 7 19696535 G T - 1 1 G>T C>A +AACAAGACACAAGCAG-1_10_80828880_T_A_+ AACAAGACACAAGCAG-1 10 80828880 T A + 1 1 T>A T>A +AAACGCTCAGTAGGAC-1_14_18268131_G_A_- AAACGCTCAGTAGGAC-1 14 18268131 G A - 1 1 G>A C>T +AAACGCTTCTCCTGCA-1_18_64499758_C_A_- AAACGCTTCTCCTGCA-1 18 64499758 C A - 1 1 C>A G>T +AACCTTTCACACCTGG-1_4_138456979_A_G_+ AACCTTTCACACCTGG-1 4 138456979 A G + 1 1 A>G A>G +AACAAGAGTTCTCACC-1_7_19696380_T_C_- AACAAGAGTTCTCACC-1 7 19696380 T C - 1 1 T>C A>G +AACCCAAAGAATTGTG-1_12_29732481_T_C_+ AACCCAAAGAATTGTG-1 12 29732481 T C + 1 1 T>C T>C +AAATGGATCGCTAATG-1_17_39848018_C_T_+ AAATGGATCGCTAATG-1 17 39848018 C T + 1 1 C>T C>T +AACCAACTCGATGGAG-1_MT_8504_T_A_+ AACCAACTCGATGGAG-1 MT 8504 T A + 1 1 T>A T>A +AACCACAAGTGGACTG-1_12_99645608_T_C_+ AACCACAAGTGGACTG-1 12 99645608 T C + 1 1 T>C T>C +AAAGAACTCCCAGGCA-1_6_116133726_C_T_- AAAGAACTCCCAGGCA-1 6 116133726 C T - 1 1 C>T G>A +AAAGTCCCATAACCCA-1_7_15917273_G_A_- AAAGTCCCATAACCCA-1 7 15917273 G A - 1 1 G>A C>T +AAACGAATCGCTCTAC-1_17_39848018_C_T_+ AAACGAATCGCTCTAC-1 17 39848018 C T + 1 1 C>T C>T +AAACGAAGTGTTTACG-1_11_43704657_C_T_+ AAACGAAGTGTTTACG-1 11 43704657 C T + 1 1 C>T C>T +AACTTCTCACTAACGT-1_12_99190188_G_A_- AACTTCTCACTAACGT-1 12 99190188 G A - 1 1 G>A C>T +AAACGAAAGGGAGGTG-1_8_72523283_T_A_- AAACGAAAGGGAGGTG-1 8 72523283 T A - 1 1 T>A A>T +AACAAAGAGGTGCGAT-1_5_112419341_C_T_- AACAAAGAGGTGCGAT-1 5 112419341 C T - 1 1 C>T G>A +AAGACTCGTCCACATA-1_5_146261122_A_G_+ AAGACTCGTCCACATA-1 5 146261122 A G + 1 1 A>G A>G +AAACGCTCACCTAAAC-1_14_19278196_T_G_+ AAACGCTCACCTAAAC-1 14 19278196 T G + 1 1 T>G T>G +AACCCAAGTAGCACGA-1_17_39847880_C_T_+ AACCCAAGTAGCACGA-1 17 39847880 C T + 1 1 C>T C>T +AAACGAACACGACGAA-1_5_138161099_C_G_+ AAACGAACACGACGAA-1 5 138161099 C G + 1 1 C>G C>G +AACAACCGTGTCCTAA-1_17_39848018_C_T_+ AACAACCGTGTCCTAA-1 17 39848018 C T + 1 1 C>T C>T +AACCTTTCATTGAAAG-1_16_38449817_C_T_- AACCTTTCATTGAAAG-1 16 38449817 C T - 1 1 C>T G>A +AAGAACACAGCACAGA-1_18_47248808_G_A_- AAGAACACAGCACAGA-1 18 47248808 G A - 1 1 G>A C>T +AACTTCTAGGGATCTG-1_16_91678942_G_A_+ AACTTCTAGGGATCTG-1 16 91678942 G A + 1 1 G>A G>A +AAAGGTAGTCTCAGAT-1_11_30099547_C_T_- AAAGGTAGTCTCAGAT-1 11 30099547 C T - 1 1 C>T G>A +AACCTTTTCAGTCAGT-1_17_39848018_C_T_+ AACCTTTTCAGTCAGT-1 17 39848018 C T + 1 1 C>T C>T +AACCTGACAAGTGACG-1_17_39848018_C_T_+ AACCTGACAAGTGACG-1 17 39848018 C T + 1 1 C>T C>T +AACCCAAAGCGATCGA-1_19_32672829_G_A_- AACCCAAAGCGATCGA-1 19 32672829 G A - 1 1 G>A C>T +AACCTGATCGGATACT-1_19_7453068_A_T_- AACCTGATCGGATACT-1 19 7453068 A T - 1 1 A>T T>A +AACACACAGTGCACAG-1_2_91002761_T_A_+ AACACACAGTGCACAG-1 2 91002761 T A + 1 1 T>A T>A +AAACGCTGTCAATGGG-1_17_39848018_C_T_+ AAACGCTGTCAATGGG-1 17 39848018 C T + 1 1 C>T C>T +AAAGGGCGTACGATGG-1_10_80172427_C_T_+ AAAGGGCGTACGATGG-1 10 80172427 C T + 1 1 C>T C>T +AACACACGTGTTGCCG-1_3_138926012_C_A_- AACACACGTGTTGCCG-1 3 138926012 C A - 1 1 C>A G>T +AAGACAAGTCGAATTC-1_X_162412066_G_A_- AAGACAAGTCGAATTC-1 X 162412066 G A - 1 1 G>A C>T +AACCACAAGCTTTGTG-1_10_77617376_C_T_+ AACCACAAGCTTTGTG-1 10 77617376 C T + 1 1 C>T C>T +AACGAAAGTGCGGTAA-1_1_191783867_C_T_+ AACGAAAGTGCGGTAA-1 1 191783867 C T + 1 1 C>T C>T +AAACCCATCGGATAAA-1_4_120896444_A_G_+ AAACCCATCGGATAAA-1 4 120896444 A G + 1 1 A>G A>G +AAGATAGAGATGGTAT-1_17_39847458_A_G_+ AAGATAGAGATGGTAT-1 17 39847458 A G + 1 1 A>G A>G +AACCACATCTTACACT-1_15_27802524_C_A_- AACCACATCTTACACT-1 15 27802524 C A - 1 1 C>A G>T +AAACGCTGTCATGGCC-1_18_73683278_T_G_- AAACGCTGTCATGGCC-1 18 73683278 T G - 1 1 T>G A>C +AACTTCTCACACGTGC-1_3_31164220_A_G_+ AACTTCTCACACGTGC-1 3 31164220 A G + 1 2 A>G A>G +AACGGGAGTGAGCTCC-1_17_39847094_C_T_+ AACGGGAGTGAGCTCC-1 17 39847094 C T + 1 1 C>T C>T +AAAGTCCGTGACTGTT-1_9_78478743_C_T_- AAAGTCCGTGACTGTT-1 9 78478743 C T - 1 1 C>T G>A +AAAGTCCTCCCAGCGA-1_2_98667010_G_A_- AAAGTCCTCCCAGCGA-1 2 98667010 G A - 1 1 G>A C>T +AAAGGTAGTTGACTGT-1_13_74322769_G_A_- AAAGGTAGTTGACTGT-1 13 74322769 G A - 1 1 G>A C>T +AACCACAAGCTTTGTG-1_2_26913045_C_T_+ AACCACAAGCTTTGTG-1 2 26913045 C T + 1 1 C>T C>T +AACCTGAAGTCCCAGC-1_12_72211844_G_A_- AACCTGAAGTCCCAGC-1 12 72211844 G A - 1 1 G>A C>T +AACCCAAAGGTATAGT-1_10_83762511_C_T_+ AACCCAAAGGTATAGT-1 10 83762511 C T + 1 1 C>T C>T +AACAACCCACACACGC-1_X_147488620_C_T_- AACAACCCACACACGC-1 X 147488620 C T - 1 1 C>T G>A +AACTTCTTCTTCCCGA-1_9_3014260_A_T_- AACTTCTTCTTCCCGA-1 9 3014260 A T - 1 1 A>T T>A +AACGGGAAGTTGCCCG-1_4_56957305_G_A_- AACGGGAAGTTGCCCG-1 4 56957305 G A - 1 1 G>A C>T +AAATGGAGTTCTGACA-1_8_66890314_C_A_+ AAATGGAGTTCTGACA-1 8 66890314 C A + 1 1 C>A C>A +AACGGGAGTTTGGCTA-1_12_87042027_T_C_+ AACGGGAGTTTGGCTA-1 12 87042027 T C + 1 1 T>C T>C +AAATGGAAGCAGATAT-1_14_8223567_T_A_+ AAATGGAAGCAGATAT-1 14 8223567 T A + 1 1 T>A T>A +AACAACCGTATGTCTG-1_16_17651303_C_G_- AACAACCGTATGTCTG-1 16 17651303 C G - 1 1 C>G G>C +AAGACTCGTCCACATA-1_16_57391683_T_A_- AAGACTCGTCCACATA-1 16 57391683 T A - 1 1 T>A A>T +AAACCCATCAAGCCAT-1_14_101634105_G_A_- AAACCCATCAAGCCAT-1 14 101634105 G A - 1 1 G>A C>T +AAACGAAAGAAGCGGG-1_7_15917397_G_T_- AAACGAAAGAAGCGGG-1 7 15917397 G T - 1 1 G>T C>A +AACCCAATCCTCTAGC-1_2_6882796_T_C_- AACCCAATCCTCTAGC-1 2 6882796 T C - 1 1 T>C A>G +AACCACAAGCTTTGTG-1_2_28230466_G_A_+ AACCACAAGCTTTGTG-1 2 28230466 G A + 1 1 G>A G>A +AACCACATCAAAGGTA-1_8_26026577_G_A_- AACCACATCAAAGGTA-1 8 26026577 G A - 1 1 G>A C>T +AACCCAAGTATCGATC-1_18_75136114_C_G_+ AACCCAAGTATCGATC-1 18 75136114 C G + 1 1 C>G C>G +AAGAACAAGAAGGGAT-1_11_74641299_C_T_+ AAGAACAAGAAGGGAT-1 11 74641299 C T + 1 1 C>T C>T +AAGACAAAGCCGGATA-1_3_32563462_C_T_+ AAGACAAAGCCGGATA-1 3 32563462 C T + 1 1 C>T C>T +AAACGAAGTTGTAAAG-1_17_39848018_C_T_+ AAACGAAGTTGTAAAG-1 17 39848018 C T + 1 1 C>T C>T +AAGACTCCAGGCGAAT-1_8_105524635_G_A_- AAGACTCCAGGCGAAT-1 8 105524635 G A - 1 1 G>A C>T +AACCTGACAAGTGACG-1_1_135371614_G_T_- AACCTGACAAGTGACG-1 1 135371614 G T - 1 1 G>T C>A +AAAGTCCCATGTGGCC-1_6_141843426_T_C_- AAAGTCCCATGTGGCC-1 6 141843426 T C - 1 1 T>C A>G +AAAGGTACAGTCTCTC-1_2_143943105_A_G_+ AAAGGTACAGTCTCTC-1 2 143943105 A G + 1 1 A>G A>G +AACCTGAAGTCCCAGC-1_9_55207437_G_T_+ AACCTGAAGTCCCAGC-1 9 55207437 G T + 1 1 G>T G>T +AACCACACAATCTGCA-1_9_3000556_C_A_- AACCACACAATCTGCA-1 9 3000556 C A - 1 1 C>A G>T +AACAACCAGTAATACG-1_11_101278214_G_A_- AACAACCAGTAATACG-1 11 101278214 G A - 1 1 G>A C>T +AAGACTCGTTGCTCGG-1_11_100581495_T_G_+ AAGACTCGTTGCTCGG-1 11 100581495 T G + 1 1 T>G T>G +AAACGAAAGGGAGGTG-1_8_72523286_C_T_- AAACGAAAGGGAGGTG-1 8 72523286 C T - 1 1 C>T G>A +AAGAACAAGGTCGAGT-1_9_3024448_C_T_- AAGAACAAGGTCGAGT-1 9 3024448 C T - 1 1 C>T G>A +AACGTCATCTGGCTGG-1_7_126795448_A_G_- AACGTCATCTGGCTGG-1 7 126795448 A G - 1 1 A>G T>C +AACTTCTAGGGATCTG-1_9_28068094_G_C_+ AACTTCTAGGGATCTG-1 9 28068094 G C + 1 1 G>C G>C +AAAGTGACAAATGGCG-1_1_85908515_C_T_+ AAAGTGACAAATGGCG-1 1 85908515 C T + 1 1 C>T C>T +AAACGCTAGGTTACAA-1_11_5992838_G_A_- AAACGCTAGGTTACAA-1 11 5992838 G A - 1 1 G>A C>T +AACCATGGTCATACCA-1_6_28426305_C_T_+ AACCATGGTCATACCA-1 6 28426305 C T + 1 1 C>T C>T +AACCAACCAAGTTGGG-1_13_110057107_G_A_- AACCAACCAAGTTGGG-1 13 110057107 G A - 1 1 G>A C>T +AACCAACCAAGTTGGG-1_5_130875122_A_G_- AACCAACCAAGTTGGG-1 5 130875122 A G - 1 1 A>G T>C +AAGATAGGTCATCAGT-1_16_6223776_T_C_+ AAGATAGGTCATCAGT-1 16 6223776 T C + 1 1 T>C T>C +AAACCCATCAAGCCAT-1_11_97481478_G_A_+ AAACCCATCAAGCCAT-1 11 97481478 G A + 1 1 G>A G>A +AACCCAAAGCAAATGT-1_10_76280630_G_A_- AACCCAAAGCAAATGT-1 10 76280630 G A - 1 1 G>A C>T +AAATGGACACCCGTAG-1_5_146261076_T_C_+ AAATGGACACCCGTAG-1 5 146261076 T C + 1 1 T>C T>C +AACCACAAGCTTTGTG-1_2_181147996_G_A_- AACCACAAGCTTTGTG-1 2 181147996 G A - 1 1 G>A C>T +AAGATAGCACGCGTGT-1_7_126795448_A_G_- AAGATAGCACGCGTGT-1 7 126795448 A G - 1 1 A>G T>C +AACCACACAGCTTTGA-1_17_67012810_G_A_- AACCACACAGCTTTGA-1 17 67012810 G A - 1 1 G>A C>T +AAACGCTAGGTAGGCT-1_7_109034298_C_T_+ AAACGCTAGGTAGGCT-1 7 109034298 C T + 1 1 C>T C>T +AACAGGGTCGGTCGGT-1_16_57391688_T_G_- AACAGGGTCGGTCGGT-1 16 57391688 T G - 1 1 T>G A>C +AAGAACACAAAGGTTA-1_3_89724737_A_T_+ AAGAACACAAAGGTTA-1 3 89724737 A T + 1 1 A>T A>T +AACCACACAATAGTAG-1_12_11325430_G_A_- AACCACACAATAGTAG-1 12 11325430 G A - 1 1 G>A C>T +AAGAACAAGGGTTTCT-1_1_175745649_T_A_+ AAGAACAAGGGTTTCT-1 1 175745649 T A + 1 1 T>A T>A +AACAAAGAGCCTATTG-1_17_39848018_C_T_+ AACAAAGAGCCTATTG-1 17 39848018 C T + 1 1 C>T C>T +AAACGAAGTGTTTACG-1_16_57391677_C_G_- AAACGAAGTGTTTACG-1 16 57391677 C G - 1 1 C>G G>C +AACCAACAGGATACGC-1_17_39847458_A_G_- AACCAACAGGATACGC-1 17 39847458 A G - 1 1 A>G T>C +AACCAACCAGTCGCTG-1_9_64177972_C_T_+ AACCAACCAGTCGCTG-1 9 64177972 C T + 1 1 C>T C>T +AAAGAACAGTCGCGAA-1_15_71679452_A_G_- AAAGAACAGTCGCGAA-1 15 71679452 A G - 1 1 A>G T>C +AAAGGTAGTATGTGTC-1_11_109573508_G_T_- AAAGGTAGTATGTGTC-1 11 109573508 G T - 1 1 G>T C>A +AACAACCCAGACGGAT-1_17_39847380_T_C_+ AACAACCCAGACGGAT-1 17 39847380 T C + 1 1 T>C T>C +AAGACAAAGGGCAGGA-1_9_3000500_G_A_- AAGACAAAGGGCAGGA-1 9 3000500 G A - 1 1 G>A C>T +AACGTCAAGAACTCCT-1_6_24758276_A_G_+ AACGTCAAGAACTCCT-1 6 24758276 A G + 1 1 A>G A>G +AACCTGAAGAGGCGTT-1_X_74311065_C_T_+ AACCTGAAGAGGCGTT-1 X 74311065 C T + 1 1 C>T C>T +AACGAAACAACTACGT-1_1_167372463_G_A_- AACGAAACAACTACGT-1 1 167372463 G A - 1 1 G>A C>T +AACCTTTAGGGTATAT-1_9_3020453_T_A_- AACCTTTAGGGTATAT-1 9 3020453 T A - 1 1 T>A A>T +AACAAGAGTAGAATGT-1_2_30097519_C_A_- AACAAGAGTAGAATGT-1 2 30097519 C A - 1 1 C>A G>T +AACGAAACAATTCACG-1_6_9048170_C_T_+ AACGAAACAATTCACG-1 6 9048170 C T + 1 1 C>T C>T +AAAGTCCAGTCGGCCT-1_4_53861723_C_T_+ AAAGTCCAGTCGGCCT-1 4 53861723 C T + 1 1 C>T C>T +AAATGGAAGCCGTCGT-1_9_123461945_C_T_+ AAATGGAAGCCGTCGT-1 9 123461945 C T + 1 1 C>T C>T +AACGGGAGTGTCATTG-1_9_3037748_A_T_- AACGGGAGTGTCATTG-1 9 3037748 A T - 1 1 A>T T>A +AACCACAGTGTTCCTC-1_9_3000577_C_A_- AACCACAGTGTTCCTC-1 9 3000577 C A - 1 1 C>A G>T +AACCACAAGCTTTGTG-1_9_56058391_C_T_+ AACCACAAGCTTTGTG-1 9 56058391 C T + 1 1 C>T C>T +AACGTCATCTGGCTGG-1_19_42283292_T_C_- AACGTCATCTGGCTGG-1 19 42283292 T C - 1 1 T>C A>G +AAAGTGAGTCATCACA-1_17_56606172_G_A_+ AAAGTGAGTCATCACA-1 17 56606172 G A + 1 1 G>A G>A +AAACCCATCGGATAAA-1_11_98030275_C_T_+ AAACCCATCGGATAAA-1 11 98030275 C T + 1 1 C>T C>T +AACCCAAGTATCGATC-1_7_111071019_T_C_- AACCCAAGTATCGATC-1 7 111071019 T C - 1 1 T>C A>G +AAAGTGATCTCGGCTT-1_19_5802077_A_G_- AAAGTGATCTCGGCTT-1 19 5802077 A G - 1 2 A>G T>C +AACCATGAGTTCCGTA-1_5_31622392_T_C_+ AACCATGAGTTCCGTA-1 5 31622392 T C + 1 1 T>C T>C +AAGACTCGTGGTACAG-1_9_37544775_G_A_- AAGACTCGTGGTACAG-1 9 37544775 G A - 1 1 G>A C>T +AAAGGTAGTCGAATTC-1_X_136836217_T_C_+ AAAGGTAGTCGAATTC-1 X 136836217 T C + 1 1 T>C T>C +AAATGGAGTTACACAC-1_5_146261106_C_G_+ AAATGGAGTTACACAC-1 5 146261106 C G + 1 1 C>G C>G +AAATGGAAGTAGAATC-1_10_80829020_A_G_+ AAATGGAAGTAGAATC-1 10 80829020 A G + 1 1 A>G A>G +AAAGAACAGCTTCTAG-1_17_39848018_C_T_+ AAAGAACAGCTTCTAG-1 17 39848018 C T + 1 1 C>T C>T +AAGACAAGTCTTTCAT-1_3_89615907_G_A_+ AAGACAAGTCTTTCAT-1 3 89615907 G A + 1 1 G>A G>A +AACGTCAAGCTAAACA-1_6_37919975_T_A_+ AACGTCAAGCTAAACA-1 6 37919975 T A + 1 1 T>A T>A +AAGACTCAGTGAATAC-1_5_108371163_T_G_+ AAGACTCAGTGAATAC-1 5 108371163 T G + 1 1 T>G T>G +AAAGAACCACAAGCCC-1_2_98666614_C_T_- AAAGAACCACAAGCCC-1 2 98666614 C T - 1 1 C>T G>A +AAAGTCCCAACCAGAG-1_16_57391685_G_A_- AAAGTCCCAACCAGAG-1 16 57391685 G A - 1 1 G>A C>T +AAAGGTACACCGTGCA-1_17_65985133_C_T_- AAAGGTACACCGTGCA-1 17 65985133 C T - 1 1 C>T G>A +AACCACACAGCTTTGA-1_8_80718657_G_A_- AACCACACAGCTTTGA-1 8 80718657 G A - 1 1 G>A C>T +AACCTGAAGGTAGACC-1_17_39847212_C_T_- AACCTGAAGGTAGACC-1 17 39847212 C T - 1 1 C>T G>A +AAAGGTAAGGCATCTT-1_16_57391683_T_A_- AAAGGTAAGGCATCTT-1 16 57391683 T A - 1 1 T>A A>T +AACCAACGTGCATGTT-1_15_5217610_G_A_+ AACCAACGTGCATGTT-1 15 5217610 G A + 1 1 G>A G>A +AACCAACGTAACAGGC-1_9_75565776_G_T_- AACCAACGTAACAGGC-1 9 75565776 G T - 1 1 G>T C>A +AAGAACAGTTGCAAGG-1_17_78375797_C_T_+ AAGAACAGTTGCAAGG-1 17 78375797 C T + 1 1 C>T C>T +AAAGGTAGTGCACGCT-1_11_114672314_T_C_+ AAAGGTAGTGCACGCT-1 11 114672314 T C + 1 1 T>C T>C +AACCCAAGTAGCACGA-1_7_126945385_T_C_+ AACCCAAGTAGCACGA-1 7 126945385 T C + 1 1 T>C T>C +AACGGGATCAGGAACG-1_5_143505576_G_A_- AACGGGATCAGGAACG-1 5 143505576 G A - 1 1 G>A C>T +AAGACTCCAACACAGG-1_MT_12770_T_A_+ AAGACTCCAACACAGG-1 MT 12770 T A + 1 1 T>A T>A +AACCTTTTCCGTGTGG-1_17_39847403_T_G_+ AACCTTTTCCGTGTGG-1 17 39847403 T G + 1 1 T>G T>G +AACGAAACAGGATCTT-1_6_54503616_C_T_+ AACGAAACAGGATCTT-1 6 54503616 C T + 1 1 C>T C>T +AACCTGAGTCCAGTTA-1_9_114982399_A_T_- AACCTGAGTCCAGTTA-1 9 114982399 A T - 1 1 A>T T>A +AAACGCTTCGGTTAGT-1_17_6236495_C_A_+ AAACGCTTCGGTTAGT-1 17 6236495 C A + 1 1 C>A C>A +AACAGGGGTGCACATT-1_17_39848018_C_T_+ AACAGGGGTGCACATT-1 17 39848018 C T + 1 1 C>T C>T +AACCATGCAGGTCAAG-1_14_65530709_C_T_- AACCATGCAGGTCAAG-1 14 65530709 C T - 1 1 C>T G>A +AACCATGGTGAGTTTC-1_7_124136540_G_C_+ AACCATGGTGAGTTTC-1 7 124136540 G C + 1 1 G>C G>C +AACAGGGAGTCATTGC-1_3_90235465_C_T_+ AACAGGGAGTCATTGC-1 3 90235465 C T + 1 1 C>T C>T +AAATGGACACCCGTAG-1_3_138790059_A_C_+ AAATGGACACCCGTAG-1 3 138790059 A C + 1 1 A>C A>C +AACCATGTCATCGCTC-1_3_102770391_C_T_+ AACCATGTCATCGCTC-1 3 102770391 C T + 1 1 C>T C>T +AACCATGTCATCGCTC-1_X_136837484_G_A_+ AACCATGTCATCGCTC-1 X 136837484 G A + 1 1 G>A G>A +AACGGGAGTGAGCTCC-1_7_81342816_G_A_- AACGGGAGTGAGCTCC-1 7 81342816 G A - 1 1 G>A C>T +AACCACATCGGAGATG-1_6_32244886_G_A_- AACCACATCGGAGATG-1 6 32244886 G A - 1 1 G>A C>T +AAACGCTAGTAGCATA-1_11_97232258_G_A_- AAACGCTAGTAGCATA-1 11 97232258 G A - 1 1 G>A C>T +AAGACTCGTGGTACAG-1_15_25363401_G_A_- AAGACTCGTGGTACAG-1 15 25363401 G A - 1 1 G>A C>T +AAACGAACAACCGACC-1_7_16915459_G_T_- AAACGAACAACCGACC-1 7 16915459 G T - 1 1 G>T C>A +AACTTCTTCTAGGAAA-1_11_32058997_T_C_+ AACTTCTTCTAGGAAA-1 11 32058997 T C + 1 1 T>C T>C +AACGGGAAGCAGCCCT-1_5_146261106_C_G_+ AACGGGAAGCAGCCCT-1 5 146261106 C G + 1 1 C>G C>G +AACTTCTTCTTCACGC-1_11_74674243_G_A_- AACTTCTTCTTCACGC-1 11 74674243 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_17_87433568_G_A_- AAACGCTCAGTAGGAC-1 17 87433568 G A - 1 1 G>A C>T +AACGTCACAAAGAGTT-1_14_55662377_C_T_- AACGTCACAAAGAGTT-1 14 55662377 C T - 1 1 C>T G>A +AACAAAGGTCTGCATA-1_13_54383729_C_T_+ AACAAAGGTCTGCATA-1 13 54383729 C T + 1 1 C>T C>T +AACCTGAAGTCCCAGC-1_2_144142599_T_C_- AACCTGAAGTCCCAGC-1 2 144142599 T C - 1 1 T>C A>G +AAAGTCCCAAACGGCA-1_X_35900995_C_A_+ AAAGTCCCAAACGGCA-1 X 35900995 C A + 1 1 C>A C>A +AACACACAGATGGCAC-1_16_23235163_C_A_+ AACACACAGATGGCAC-1 16 23235163 C A + 1 1 C>A C>A +AAACGCTGTCATGGCC-1_9_3035198_T_A_- AAACGCTGTCATGGCC-1 9 3035198 T A - 1 1 T>A A>T +AACCAACGTAACAGGC-1_14_18271284_G_A_+ AACCAACGTAACAGGC-1 14 18271284 G A + 1 1 G>A G>A +AACAGGGGTTACGATC-1_17_39847607_T_C_+ AACAGGGGTTACGATC-1 17 39847607 T C + 1 1 T>C T>C +AACGAAATCTATCGTT-1_6_125221946_A_C_+ AACGAAATCTATCGTT-1 6 125221946 A C + 1 1 A>C A>C +AACTTCTCATGAATAG-1_18_31864837_C_T_+ AACTTCTCATGAATAG-1 18 31864837 C T + 1 1 C>T C>T +AAAGGGCCAGCGACCT-1_4_123194621_C_T_+ AAAGGGCCAGCGACCT-1 4 123194621 C T + 1 1 C>T C>T +AAAGGTAGTCGAATTC-1_X_167207222_T_C_- AAAGGTAGTCGAATTC-1 X 167207222 T C - 1 1 T>C A>G +AAAGTGATCCGCTGTT-1_17_39847426_T_C_- AAAGTGATCCGCTGTT-1 17 39847426 T C - 1 1 T>C A>G +AAACGCTGTGGACAGT-1_12_51614776_C_T_- AAACGCTGTGGACAGT-1 12 51614776 C T - 1 1 C>T G>A +AACGTCAAGTATGAAC-1_17_39847403_T_G_- AACGTCAAGTATGAAC-1 17 39847403 T G - 1 1 T>G A>C +AACCCAAAGATTGTGA-1_17_39848018_C_T_+ AACCCAAAGATTGTGA-1 17 39848018 C T + 1 1 C>T C>T +AAATGGACACCCGTAG-1_11_94288172_G_A_- AAATGGACACCCGTAG-1 11 94288172 G A - 1 1 G>A C>T +AACCTTTTCGCAGTCG-1_11_22974359_T_C_+ AACCTTTTCGCAGTCG-1 11 22974359 T C + 1 1 T>C T>C +AACAAAGGTGTAGTGG-1_16_57391679_G_T_- AACAAAGGTGTAGTGG-1 16 57391679 G T - 2 2 G>T C>A +AACCTGATCGCTCATC-1_7_6782371_G_A_+ AACCTGATCGCTCATC-1 7 6782371 G A + 1 1 G>A G>A +AACCACAAGCTTTGTG-1_4_28945776_T_C_+ AACCACAAGCTTTGTG-1 4 28945776 T C + 1 1 T>C T>C +AAGACTCTCTGGGCAC-1_12_78350929_T_C_+ AAGACTCTCTGGGCAC-1 12 78350929 T C + 1 1 T>C T>C +AAGAACATCCTGGTCT-1_11_74677193_C_T_- AAGAACATCCTGGTCT-1 11 74677193 C T - 1 1 C>T G>A +AACCACACACAAATGA-1_3_90213036_T_G_- AACCACACACAAATGA-1 3 90213036 T G - 1 1 T>G A>C +AACGAAATCCCGAAAT-1_9_110251067_C_A_+ AACGAAATCCCGAAAT-1 9 110251067 C A + 1 1 C>A C>A +AAACGCTGTGGACAGT-1_17_91092713_G_A_- AAACGCTGTGGACAGT-1 17 91092713 G A - 1 1 G>A C>T +AACGGGAAGCAGCCCT-1_9_3014090_C_A_- AACGGGAAGCAGCCCT-1 9 3014090 C A - 1 1 C>A G>T +AACCAACCAGTCGCTG-1_16_94468899_C_T_+ AACCAACCAGTCGCTG-1 16 94468899 C T + 1 1 C>T C>T +AACTTCTCATGAATAG-1_7_98717304_C_G_+ AACTTCTCATGAATAG-1 7 98717304 C G + 1 1 C>G C>G +AACCAACGTGCATGTT-1_3_88569603_A_G_+ AACCAACGTGCATGTT-1 3 88569603 A G + 1 1 A>G A>G +AACCACATCGGAGATG-1_16_57391454_T_C_- AACCACATCGGAGATG-1 16 57391454 T C - 1 1 T>C A>G +AACAACCAGACGACTG-1_13_91540970_G_C_+ AACAACCAGACGACTG-1 13 91540970 G C + 1 1 G>C G>C +AAACCCAAGTTTAGGA-1_17_39848018_C_T_+ AAACCCAAGTTTAGGA-1 17 39848018 C T + 1 1 C>T C>T +AAGACTCGTCCAGAAG-1_3_126966738_G_A_- AAGACTCGTCCAGAAG-1 3 126966738 G A - 1 1 G>A C>T +AAACCCACACCGTGGT-1_15_83126086_A_C_- AAACCCACACCGTGGT-1 15 83126086 A C - 1 1 A>C T>G +AAAGTCCTCTTCCCGA-1_11_77978983_C_A_+ AAAGTCCTCTTCCCGA-1 11 77978983 C A + 1 1 C>A C>A +AAGACTCAGAAGCTCG-1_4_34594252_G_A_- AAGACTCAGAAGCTCG-1 4 34594252 G A - 1 1 G>A C>T +AACTTCTAGTGATGGC-1_1_68907602_G_A_- AACTTCTAGTGATGGC-1 1 68907602 G A - 1 1 G>A C>T +AAACGAAGTTCATCTT-1_11_76778583_G_A_- AAACGAAGTTCATCTT-1 11 76778583 G A - 1 1 G>A C>T +AAACGCTTCCATAGAC-1_17_39847913_C_T_+ AAACGCTTCCATAGAC-1 17 39847913 C T + 1 1 C>T C>T +AACTTCTAGATACGAT-1_16_41561996_C_T_+ AACTTCTAGATACGAT-1 16 41561996 C T + 1 1 C>T C>T +AAAGGATCATTCAGGT-1_6_49258834_C_T_- AAAGGATCATTCAGGT-1 6 49258834 C T - 1 1 C>T G>A +AAAGGATAGCGTTGTT-1_X_7922948_G_A_+ AAAGGATAGCGTTGTT-1 X 7922948 G A + 1 1 G>A G>A +AACCAACAGTATCTGC-1_16_57391677_C_G_- AACCAACAGTATCTGC-1 16 57391677 C G - 1 1 C>G G>C +AAATGGACAAGCGCAA-1_13_68865426_C_T_- AAATGGACAAGCGCAA-1 13 68865426 C T - 1 1 C>T G>A +AACGTCAAGCTAAACA-1_3_73518928_A_G_+ AACGTCAAGCTAAACA-1 3 73518928 A G + 1 1 A>G A>G +AAGAACACACTAGGTT-1_6_85134036_A_T_- AAGAACACACTAGGTT-1 6 85134036 A T - 1 1 A>T T>A +AACAAAGTCATTTCCA-1_2_121987530_G_A_+ AACAAAGTCATTTCCA-1 2 121987530 G A + 1 1 G>A G>A +AAACCCAAGTTTAGGA-1_17_39847065_T_A_+ AAACCCAAGTTTAGGA-1 17 39847065 T A + 1 1 T>A T>A +AACAACCAGTAATACG-1_1_182816495_C_A_+ AACAACCAGTAATACG-1 1 182816495 C A + 1 1 C>A C>A +AACTTCTAGGGATCTG-1_19_5107943_T_G_- AACTTCTAGGGATCTG-1 19 5107943 T G - 1 1 T>G A>C +AACCACAAGGACAGCT-1_1_55078056_G_A_- AACCACAAGGACAGCT-1 1 55078056 G A - 1 1 G>A C>T +AACCCAAGTATCGATC-1_8_50767555_T_G_- AACCCAAGTATCGATC-1 8 50767555 T G - 1 1 T>G A>C +AACTTCTCAGGACTTT-1_5_146451962_G_A_+ AACTTCTCAGGACTTT-1 5 146451962 G A + 1 1 G>A G>A +AAGACAAAGCGCCTTG-1_9_110385275_A_G_- AAGACAAAGCGCCTTG-1 9 110385275 A G - 1 1 A>G T>C +AAGATAGAGGCCACTC-1_7_103826535_C_T_- AAGATAGAGGCCACTC-1 7 103826535 C T - 1 1 C>T G>A +AAACGAAAGGAGAGTA-1_9_120960329_C_T_+ AAACGAAAGGAGAGTA-1 9 120960329 C T + 1 1 C>T C>T +AAGACTCGTGGTACAG-1_14_103224352_G_A_- AAGACTCGTGGTACAG-1 14 103224352 G A - 1 1 G>A C>T +AACTTCTAGCCTAACT-1_17_39847458_A_G_+ AACTTCTAGCCTAACT-1 17 39847458 A G + 1 1 A>G A>G +AAAGAACTCGTGGGAA-1_17_39847960_A_T_- AAAGAACTCGTGGGAA-1 17 39847960 A T - 1 1 A>T T>A +AACCACAAGTTGCCTA-1_3_88745072_A_T_- AACCACAAGTTGCCTA-1 3 88745072 A T - 1 1 A>T T>A +AACCAACGTGCATGTT-1_19_9984993_G_A_+ AACCAACGTGCATGTT-1 19 9984993 G A + 1 1 G>A G>A +AACCCAAGTCATAACC-1_7_28376779_C_T_- AACCCAAGTCATAACC-1 7 28376779 C T - 1 1 C>T G>A +AAGAACACATAACGGG-1_17_39847403_T_G_- AAGAACACATAACGGG-1 17 39847403 T G - 1 1 T>G A>C +AAGACTCCAGGCGAAT-1_9_86516125_A_G_+ AAGACTCCAGGCGAAT-1 9 86516125 A G + 1 1 A>G A>G +AACCATGCAGGTCAAG-1_17_39848018_C_T_+ AACCATGCAGGTCAAG-1 17 39848018 C T + 1 1 C>T C>T +AACGGGAAGTTACTCG-1_15_44375399_G_A_- AACGGGAAGTTACTCG-1 15 44375399 G A - 1 1 G>A C>T +AAACCCACAAAGACGC-1_5_115345715_G_A_- AAACCCACAAAGACGC-1 5 115345715 G A - 1 1 G>A C>T +AACAGGGCAAATCCCA-1_4_57943961_C_T_- AACAGGGCAAATCCCA-1 4 57943961 C T - 1 1 C>T G>A +AAAGAACCACAAGCCC-1_9_3037748_A_T_- AAAGAACCACAAGCCC-1 9 3037748 A T - 1 1 A>T T>A +AACCACACAGCTTTGA-1_9_3000577_C_A_- AACCACACAGCTTTGA-1 9 3000577 C A - 1 1 C>A G>T +AACCTTTCACTCAGAT-1_X_36605941_C_T_+ AACCTTTCACTCAGAT-1 X 36605941 C T + 1 1 C>T C>T +AAGACTCAGAAATTCG-1_16_44085533_G_A_- AAGACTCAGAAATTCG-1 16 44085533 G A - 1 1 G>A C>T +AACAACCAGACATATG-1_2_5379370_T_G_- AACAACCAGACATATG-1 2 5379370 T G - 1 1 T>G A>C +AACGAAACAGGATCTT-1_19_7198280_G_A_- AACGAAACAGGATCTT-1 19 7198280 G A - 1 1 G>A C>T +AACACACTCTGCGGAC-1_4_148166192_C_T_+ AACACACTCTGCGGAC-1 4 148166192 C T + 1 1 C>T C>T +AAAGGGCCAGATAAAC-1_MT_8511_T_C_+ AAAGGGCCAGATAAAC-1 MT 8511 T C + 1 1 T>C T>C +AAGAACATCTCCGAAA-1_4_87162852_G_A_- AAGAACATCTCCGAAA-1 4 87162852 G A - 1 1 G>A C>T +AACGGGAGTTGTGCCG-1_8_95714823_C_T_+ AACGGGAGTTGTGCCG-1 8 95714823 C T + 1 1 C>T C>T +AAACCCACAGCAGTCC-1_8_108917840_T_C_+ AAACCCACAGCAGTCC-1 8 108917840 T C + 1 1 T>C T>C +AAACGAAGTGTAACGG-1_16_67488055_T_C_- AAACGAAGTGTAACGG-1 16 67488055 T C - 1 1 T>C A>G +AAATGGAAGTTTCGGT-1_16_42181403_C_T_+ AAATGGAAGTTTCGGT-1 16 42181403 C T + 1 1 C>T C>T +AACCTGACACTCTGCT-1_16_57391683_T_A_- AACCTGACACTCTGCT-1 16 57391683 T A - 1 1 T>A A>T +AAAGGATCACGACAGA-1_5_121151900_C_A_- AAAGGATCACGACAGA-1 5 121151900 C A - 1 1 C>A G>T +AACCTGATCTCTCTAA-1_X_81097870_C_A_+ AACCTGATCTCTCTAA-1 X 81097870 C A + 1 1 C>A C>A +AACGGGAGTTTGGCTA-1_12_87042005_A_G_+ AACGGGAGTTTGGCTA-1 12 87042005 A G + 1 1 A>G A>G +AAAGGGCCAGTTGCGC-1_3_14609656_G_A_- AAAGGGCCAGTTGCGC-1 3 14609656 G A - 1 1 G>A C>T +AAAGGTAGTATGCTAC-1_18_60776519_C_T_+ AAAGGTAGTATGCTAC-1 18 60776519 C T + 1 1 C>T C>T +AAAGAACCAGATTAAG-1_5_140719042_A_C_+ AAAGAACCAGATTAAG-1 5 140719042 A C + 1 1 A>C A>C +AAGAACACAAAGGTTA-1_9_61913918_G_A_- AAGAACACAAAGGTTA-1 9 61913918 G A - 1 1 G>A C>T +AAACCCACACCGTGGT-1_17_28437756_A_G_- AAACCCACACCGTGGT-1 17 28437756 A G - 1 1 A>G T>C +AACCAACGTCCCTGTT-1_6_128799489_T_C_- AACCAACGTCCCTGTT-1 6 128799489 T C - 1 1 T>C A>G +AAACGAAGTTATGGTC-1_10_63100739_T_C_+ AAACGAAGTTATGGTC-1 10 63100739 T C + 1 1 T>C T>C +AACGGGACAGTTGTTG-1_18_24019662_G_A_- AACGGGACAGTTGTTG-1 18 24019662 G A - 1 1 G>A C>T +AAGAACAGTAAGATAC-1_12_99645608_T_C_+ AAGAACAGTAAGATAC-1 12 99645608 T C + 1 1 T>C T>C +AAGATAGCACGCGTGT-1_5_25796200_G_A_+ AAGATAGCACGCGTGT-1 5 25796200 G A + 1 1 G>A G>A +AAACCCAGTCAAATCC-1_13_93487563_G_A_- AAACCCAGTCAAATCC-1 13 93487563 G A - 1 1 G>A C>T +AAACCCACATCTGGGC-1_17_39847403_T_G_+ AAACCCACATCTGGGC-1 17 39847403 T G + 1 1 T>G T>G +AAGACAATCGCGTCGA-1_X_167207312_A_G_- AAGACAATCGCGTCGA-1 X 167207312 A G - 1 1 A>G T>C +AACAACCCATTAAAGG-1_2_113776405_G_A_- AACAACCCATTAAAGG-1 2 113776405 G A - 1 1 G>A C>T +AACGTCAAGCGAGGAG-1_5_115147377_C_T_- AACGTCAAGCGAGGAG-1 5 115147377 C T - 1 1 C>T G>A +AACTTCTCACTAACGT-1_14_18269154_G_A_- AACTTCTCACTAACGT-1 14 18269154 G A - 1 1 G>A C>T +AACTTCTCATGAATAG-1_4_134473647_C_T_+ AACTTCTCATGAATAG-1 4 134473647 C T + 1 1 C>T C>T +AACGTCACACTCCTTG-1_3_129699659_G_A_- AACGTCACACTCCTTG-1 3 129699659 G A - 1 1 G>A C>T +AACCTTTCATTGAAAG-1_13_54796535_G_T_+ AACCTTTCATTGAAAG-1 13 54796535 G T + 1 1 G>T G>T +AACCACATCGTAACTG-1_16_57391592_C_G_- AACCACATCGTAACTG-1 16 57391592 C G - 1 2 C>G G>C +AAATGGACACCCGTAG-1_7_100814046_A_T_+ AAATGGACACCCGTAG-1 7 100814046 A T + 1 1 A>T A>T +AACGTCATCTGGCTGG-1_5_142903862_A_C_- AACGTCATCTGGCTGG-1 5 142903862 A C - 1 2 A>C T>G +AAAGGGCAGACTACCT-1_16_57391654_A_G_- AAAGGGCAGACTACCT-1 16 57391654 A G - 1 1 A>G T>C +AACGTCACATAGATGA-1_8_111126652_C_A_+ AACGTCACATAGATGA-1 8 111126652 C A + 1 1 C>A C>A +AAGACTCGTCAAGTTC-1_9_3002330_C_T_- AAGACTCGTCAAGTTC-1 9 3002330 C T - 1 1 C>T G>A +AACGTCATCTGGCTGG-1_3_69035486_G_A_- AACGTCATCTGGCTGG-1 3 69035486 G A - 1 1 G>A C>T +AAACGCTAGGTTACAA-1_10_78269980_G_A_- AAACGCTAGGTTACAA-1 10 78269980 G A - 1 1 G>A C>T +AAAGGGCTCTCATAGG-1_2_169633746_A_T_+ AAAGGGCTCTCATAGG-1 2 169633746 A T + 1 1 A>T A>T +AAAGGGCAGACTACCT-1_16_57391683_T_A_- AAAGGGCAGACTACCT-1 16 57391683 T A - 1 1 T>A A>T +AAAGTGAGTATCACCA-1_16_57391679_G_T_- AAAGTGAGTATCACCA-1 16 57391679 G T - 1 1 G>T C>A +AAAGGATTCTCATGCC-1_15_81865431_A_G_- AAAGGATTCTCATGCC-1 15 81865431 A G - 1 1 A>G T>C +AAGACTCTCATTGGTG-1_3_105728375_A_G_- AAGACTCTCATTGGTG-1 3 105728375 A G - 1 1 A>G T>C +AAACCCATCGGATAAA-1_2_121450768_A_G_+ AAACCCATCGGATAAA-1 2 121450768 A G + 1 1 A>G A>G +AAAGGGCTCCTCAGGG-1_13_44869673_A_G_+ AAAGGGCTCCTCAGGG-1 13 44869673 A G + 1 1 A>G A>G +AAGACTCGTTGCTCGG-1_9_70554625_T_G_+ AAGACTCGTTGCTCGG-1 9 70554625 T G + 1 1 T>G T>G +AAAGGATAGTCCTGTA-1_8_111719495_T_G_- AAAGGATAGTCCTGTA-1 8 111719495 T G - 1 1 T>G A>C +AAAGGTAGTACACGCC-1_7_142376090_G_A_- AAAGGTAGTACACGCC-1 7 142376090 G A - 1 2 G>A C>T +AACCAACCAATAGGGC-1_9_3000362_G_T_- AACCAACCAATAGGGC-1 9 3000362 G T - 1 1 G>T C>A +AACGTCAAGCTAAACA-1_2_3214651_T_G_+ AACGTCAAGCTAAACA-1 2 3214651 T G + 1 1 T>G T>G +AACACACAGAGAGCCT-1_2_84737729_G_A_+ AACACACAGAGAGCCT-1 2 84737729 G A + 1 1 G>A G>A +AACAAAGCACGCAGTC-1_9_90107274_T_C_- AACAAAGCACGCAGTC-1 9 90107274 T C - 1 1 T>C A>G +AAAGGATAGTGGGAAA-1_10_93583520_C_T_- AAAGGATAGTGGGAAA-1 10 93583520 C T - 1 1 C>T G>A +AACGGGACAGTTGTTG-1_2_174336881_A_T_+ AACGGGACAGTTGTTG-1 2 174336881 A T + 1 1 A>T A>T +AAACGCTAGGTAGGCT-1_7_109034270_C_T_+ AAACGCTAGGTAGGCT-1 7 109034270 C T + 1 1 C>T C>T +AAGACTCGTTGCTCGG-1_18_22422603_T_C_+ AAGACTCGTTGCTCGG-1 18 22422603 T C + 1 1 T>C T>C +AACGTCAAGTATGAAC-1_17_39848018_C_T_+ AACGTCAAGTATGAAC-1 17 39848018 C T + 1 1 C>T C>T +AACGGGAAGTTGCCCG-1_14_47736203_A_G_+ AACGGGAAGTTGCCCG-1 14 47736203 A G + 1 1 A>G A>G +AAGATAGAGGAATCGC-1_7_105641239_G_T_+ AAGATAGAGGAATCGC-1 7 105641239 G T + 1 1 G>T G>T +AAAGTGACACGACGAA-1_5_146261076_T_C_+ AAAGTGACACGACGAA-1 5 146261076 T C + 1 1 T>C T>C +AACCACAAGCTTTGTG-1_8_85538764_G_A_- AACCACAAGCTTTGTG-1 8 85538764 G A - 1 1 G>A C>T +AACGGGAGTTTGGCTA-1_12_87042019_G_A_+ AACGGGAGTTTGGCTA-1 12 87042019 G A + 1 1 G>A G>A +AAACGAAGTGTTTACG-1_4_104402599_A_G_+ AAACGAAGTGTTTACG-1 4 104402599 A G + 1 1 A>G A>G +AACACACTCTGCGGAC-1_7_141009701_A_G_- AACACACTCTGCGGAC-1 7 141009701 A G - 1 1 A>G T>C +AAACGAAGTGCTCTCT-1_3_88410613_T_C_- AAACGAAGTGCTCTCT-1 3 88410613 T C - 1 1 T>C A>G +AAAGGATTCACAGAGG-1_9_123462142_T_G_+ AAAGGATTCACAGAGG-1 9 123462142 T G + 1 1 T>G T>G +AACCAACAGTCTGCGC-1_17_39847458_A_G_- AACCAACAGTCTGCGC-1 17 39847458 A G - 1 1 A>G T>C +AAAGGGCCAACCAATC-1_16_57391680_C_T_- AAAGGGCCAACCAATC-1 16 57391680 C T - 1 1 C>T G>A +AAGATAGAGGAATCGC-1_1_59110082_T_C_- AAGATAGAGGAATCGC-1 1 59110082 T C - 1 1 T>C A>G +AAAGTCCAGTCGGCCT-1_4_129111773_G_T_- AAAGTCCAGTCGGCCT-1 4 129111773 G T - 1 1 G>T C>A +AAGAACAGTTCGGTTA-1_17_87035637_C_A_+ AAGAACAGTTCGGTTA-1 17 87035637 C A + 1 1 C>A C>A +AAAGTCCTCCCAGCGA-1_9_3004628_A_T_- AAAGTCCTCCCAGCGA-1 9 3004628 A T - 1 1 A>T T>A +AAACGAACATAGCACT-1_17_37074062_C_T_+ AAACGAACATAGCACT-1 17 37074062 C T + 1 1 C>T C>T +AAAGTGACACGACGAA-1_5_146261080_C_A_+ AAAGTGACACGACGAA-1 5 146261080 C A + 1 1 C>A C>A +AAAGGTAAGACTTCAC-1_X_42109503_T_G_+ AAAGGTAAGACTTCAC-1 X 42109503 T G + 1 1 T>G T>G +AAAGGGCTCTCACTCG-1_19_5802543_T_G_- AAAGGGCTCTCACTCG-1 19 5802543 T G - 1 1 T>G A>C +AACCAACGTTTCGTGA-1_X_136838184_T_G_+ AACCAACGTTTCGTGA-1 X 136838184 T G + 1 5 T>G T>G +AACCCAACACTGTTCC-1_17_70528738_G_A_+ AACCCAACACTGTTCC-1 17 70528738 G A + 1 1 G>A G>A +AAGAACAAGGGTTTCT-1_13_117668143_C_T_+ AAGAACAAGGGTTTCT-1 13 117668143 C T + 1 1 C>T C>T +AACAAGACACAATCTG-1_X_75109580_C_A_+ AACAAGACACAATCTG-1 X 75109580 C A + 1 1 C>A C>A +AACGTCATCTGGCTGG-1_5_122453748_G_A_- AACGTCATCTGGCTGG-1 5 122453748 G A - 1 1 G>A C>T +AACAACCAGTAATACG-1_4_129849817_C_A_+ AACAACCAGTAATACG-1 4 129849817 C A + 1 1 C>A C>A +AAAGTCCAGTCGGCCT-1_3_117319194_C_T_- AAAGTCCAGTCGGCCT-1 3 117319194 C T - 1 1 C>T G>A +AACCAACTCGATGGAG-1_11_93902332_C_A_+ AACCAACTCGATGGAG-1 11 93902332 C A + 1 1 C>A C>A +AACGAAAGTCCAAATC-1_17_39848018_C_T_+ AACGAAAGTCCAAATC-1 17 39848018 C T + 1 1 C>T C>T +AAAGGGCCAGCGCTTG-1_17_39847403_T_G_+ AAAGGGCCAGCGCTTG-1 17 39847403 T G + 1 1 T>G T>G +AACAACCAGTAATACG-1_MT_3515_C_G_+ AACAACCAGTAATACG-1 MT 3515 C G + 1 1 C>G C>G +AAACCCAAGATTGCGG-1_MT_11403_A_T_+ AAACCCAAGATTGCGG-1 MT 11403 A T + 1 1 A>T A>T +AACAACCCAGGAACCA-1_17_39848018_C_T_+ AACAACCCAGGAACCA-1 17 39848018 C T + 1 1 C>T C>T +AACAAAGCACGGCACT-1_X_136837419_T_C_+ AACAAAGCACGGCACT-1 X 136837419 T C + 1 1 T>C T>C +AAAGAACAGTCGCGAA-1_11_36628768_A_G_- AAAGAACAGTCGCGAA-1 11 36628768 A G - 1 1 A>G T>C +AAAGGATCAGACGCTC-1_2_21827944_G_T_+ AAAGGATCAGACGCTC-1 2 21827944 G T + 1 1 G>T G>T +AACGTCACACGCTGAC-1_19_5801944_C_T_- AACGTCACACGCTGAC-1 19 5801944 C T - 1 1 C>T G>A +AACAACCGTATGTCTG-1_2_65710154_T_A_+ AACAACCGTATGTCTG-1 2 65710154 T A + 1 1 T>A T>A +AAACGAATCCTTGGAA-1_18_35572458_T_G_+ AAACGAATCCTTGGAA-1 18 35572458 T G + 1 1 T>G T>G +AACCAACTCAAGAATG-1_17_45571094_G_T_- AACCAACTCAAGAATG-1 17 45571094 G T - 1 1 G>T C>A +AAAGGTAAGGCATCTT-1_16_57391677_C_G_- AAAGGTAAGGCATCTT-1 16 57391677 C G - 1 1 C>G G>C +AAACGCTAGGTAGGCT-1_15_99735555_G_A_- AAACGCTAGGTAGGCT-1 15 99735555 G A - 1 1 G>A C>T +AACCACATCCATGCAA-1_12_9028747_C_T_+ AACCACATCCATGCAA-1 12 9028747 C T + 1 1 C>T C>T +AAGACTCGTTGCTCGG-1_9_70554648_T_C_+ AAGACTCGTTGCTCGG-1 9 70554648 T C + 1 1 T>C T>C +AACACACCAGACCAGA-1_15_76950516_C_G_+ AACACACCAGACCAGA-1 15 76950516 C G + 1 1 C>G C>G +AAAGGTACACCGTGCA-1_2_174346558_C_T_+ AAAGGTACACCGTGCA-1 2 174346558 C T + 1 1 C>T C>T +AAGATAGAGGCCACTC-1_13_90924444_G_C_+ AAGATAGAGGCCACTC-1 13 90924444 G C + 1 1 G>C G>C +AACAACCGTATGTCTG-1_7_126795452_A_T_- AACAACCGTATGTCTG-1 7 126795452 A T - 1 1 A>T T>A +AACCAACGTTTCGTGA-1_10_32571541_G_C_- AACCAACGTTTCGTGA-1 10 32571541 G C - 1 1 G>C C>G +AACCTGAAGTCCCAGC-1_17_29332335_G_A_- AACCTGAAGTCCCAGC-1 17 29332335 G A - 1 1 G>A C>T +AAACGAAGTCTCAGAT-1_16_57391454_T_C_- AAACGAAGTCTCAGAT-1 16 57391454 T C - 1 1 T>C A>G +AACCAACGTCGAACGA-1_9_96471459_A_T_- AACCAACGTCGAACGA-1 9 96471459 A T - 1 1 A>T T>A +AACGAAAAGCTAAACA-1_3_57834796_T_C_+ AACGAAAAGCTAAACA-1 3 57834796 T C + 1 1 T>C T>C +AAAGGGCAGACTACCT-1_16_57391685_G_A_- AAAGGGCAGACTACCT-1 16 57391685 G A - 1 1 G>A C>T +AAAGGTAGTACACGCC-1_9_69997186_A_G_+ AAAGGTAGTACACGCC-1 9 69997186 A G + 1 1 A>G A>G +AAATGGAAGTCGGCCT-1_11_42158789_T_C_- AAATGGAAGTCGGCCT-1 11 42158789 T C - 1 1 T>C A>G +AACCCAAAGCGATCGA-1_10_117865297_G_C_- AACCCAAAGCGATCGA-1 10 117865297 G C - 1 1 G>C C>G +AACTTCTCACAACGTT-1_9_3014073_G_A_- AACTTCTCACAACGTT-1 9 3014073 G A - 1 1 G>A C>T +AAAGGTAGTATGCTAC-1_11_50248368_G_A_+ AAAGGTAGTATGCTAC-1 11 50248368 G A + 1 1 G>A G>A +AACAGGGAGGTGCTGA-1_10_108831126_G_T_- AACAGGGAGGTGCTGA-1 10 108831126 G T - 1 1 G>T C>A +AACTTCTAGAGTCCGA-1_17_45419737_C_T_- AACTTCTAGAGTCCGA-1 17 45419737 C T - 1 1 C>T G>A +AACAAAGTCCCGAGAC-1_3_58593019_A_T_+ AACAAAGTCCCGAGAC-1 3 58593019 A T + 1 1 A>T A>T +AACCAACTCGATGGAG-1_5_143505603_G_T_- AACCAACTCGATGGAG-1 5 143505603 G T - 1 1 G>T C>A +AACACACCAGACCAGA-1_9_118567184_C_T_+ AACACACCAGACCAGA-1 9 118567184 C T + 1 1 C>T C>T +AACACACGTGGATCAG-1_3_95234606_G_A_+ AACACACGTGGATCAG-1 3 95234606 G A + 1 1 G>A G>A +AACCACAAGCTTTGTG-1_6_65095517_T_C_+ AACCACAAGCTTTGTG-1 6 65095517 T C + 1 1 T>C T>C +AAGAACAAGGTCGAGT-1_16_57391688_T_G_- AAGAACAAGGTCGAGT-1 16 57391688 T G - 1 1 T>G A>C +AACGTCAAGCGAGGAG-1_11_97781389_A_G_- AACGTCAAGCGAGGAG-1 11 97781389 A G - 1 1 A>G T>C +AAGACTCAGTGAATAC-1_5_108371162_G_T_+ AAGACTCAGTGAATAC-1 5 108371162 G T + 1 1 G>T G>T +AAGACAAGTCCACATA-1_12_102398250_T_A_- AAGACAAGTCCACATA-1 12 102398250 T A - 1 1 T>A A>T +AACAACCGTATGTCTG-1_7_126795446_A_G_- AACAACCGTATGTCTG-1 7 126795446 A G - 1 1 A>G T>C +AACCTGATCGCTCATC-1_17_39848045_G_C_+ AACCTGATCGCTCATC-1 17 39848045 G C + 1 1 G>C G>C +AACCACAGTCTACAAC-1_2_150838364_G_A_- AACCACAGTCTACAAC-1 2 150838364 G A - 1 1 G>A C>T +AACGAAATCCTGTAAG-1_12_99645608_T_C_+ AACGAAATCCTGTAAG-1 12 99645608 T C + 1 1 T>C T>C +AAGATAGGTACGCGTC-1_7_28778432_A_G_+ AAGATAGGTACGCGTC-1 7 28778432 A G + 1 1 A>G A>G +AAATGGATCTGCGGCA-1_5_71763539_A_T_+ AAATGGATCTGCGGCA-1 5 71763539 A T + 1 1 A>T A>T +AAAGGTAGTATGCTAC-1_15_44686930_T_C_- AAAGGTAGTATGCTAC-1 15 44686930 T C - 1 1 T>C A>G +AACTTCTAGCAGATAT-1_11_87265706_C_A_- AACTTCTAGCAGATAT-1 11 87265706 C A - 1 1 C>A G>T +AACAGGGTCGGTCGGT-1_17_53506580_A_T_+ AACAGGGTCGGTCGGT-1 17 53506580 A T + 1 1 A>T A>T +AACCAACGTCCCTGTT-1_7_15917264_T_G_- AACCAACGTCCCTGTT-1 7 15917264 T G - 1 1 T>G A>C +AAGAACATCTCCGAAA-1_3_103057575_C_G_+ AAGAACATCTCCGAAA-1 3 103057575 C G + 1 1 C>G C>G +AAAGGGCCAGCGACAA-1_19_9984933_T_C_+ AAAGGGCCAGCGACAA-1 19 9984933 T C + 1 1 T>C T>C +AAACCCACAGTTCTAG-1_13_25252183_G_A_- AAACCCACAGTTCTAG-1 13 25252183 G A - 1 1 G>A C>T +AAAGTGAAGGCATCGA-1_9_78478620_T_C_- AAAGTGAAGGCATCGA-1 9 78478620 T C - 1 1 T>C A>G +AACCACATCGGAGATG-1_9_95979124_T_C_+ AACCACATCGGAGATG-1 9 95979124 T C + 1 1 T>C T>C +AAACCCACAGCAGTCC-1_2_117163521_G_A_+ AAACCCACAGCAGTCC-1 2 117163521 G A + 1 1 G>A G>A +AAGACTCCAACACAGG-1_5_23506353_G_A_- AAGACTCCAACACAGG-1 5 23506353 G A - 1 2 G>A C>T +AACCTTTCACACCTGG-1_6_115173519_T_A_+ AACCTTTCACACCTGG-1 6 115173519 T A + 1 1 T>A T>A +AACCAACCAGCAATTC-1_17_39847403_T_G_- AACCAACCAGCAATTC-1 17 39847403 T G - 1 1 T>G A>C +AACACACAGGATCACG-1_7_44879970_G_A_- AACACACAGGATCACG-1 7 44879970 G A - 1 1 G>A C>T +AAGACTCGTGCGGTAA-1_2_55597481_C_T_+ AAGACTCGTGCGGTAA-1 2 55597481 C T + 1 1 C>T C>T +AACTTCTAGGGATCTG-1_3_130059632_G_T_- AACTTCTAGGGATCTG-1 3 130059632 G T - 1 1 G>T C>A +AAAGGTACACAGTCAT-1_12_44311877_C_A_+ AAAGGTACACAGTCAT-1 12 44311877 C A + 1 1 C>A C>A +AAACGCTCAGTAGGAC-1_8_94067792_C_A_+ AAACGCTCAGTAGGAC-1 8 94067792 C A + 1 1 C>A C>A +AAGAACAGTTGCTCCT-1_4_116990345_C_A_- AAGAACAGTTGCTCCT-1 4 116990345 C A - 1 1 C>A G>T +AAGACTCCAACACAGG-1_11_19018869_T_C_- AAGACTCCAACACAGG-1 11 19018869 T C - 1 1 T>C A>G +AACGTCATCTGGCTGG-1_13_11990482_G_A_- AACGTCATCTGGCTGG-1 13 11990482 G A - 1 1 G>A C>T +AAGACAAAGAAGGGAT-1_14_44614131_C_T_- AAGACAAAGAAGGGAT-1 14 44614131 C T - 1 1 C>T G>A +AAAGAACCAAATTAGG-1_15_75565022_A_T_- AAAGAACCAAATTAGG-1 15 75565022 A T - 1 1 A>T T>A +AACTTCTCATGAATAG-1_3_138926012_C_A_- AACTTCTCATGAATAG-1 3 138926012 C A - 1 1 C>A G>T +AAAGGGCCAGCGCTTG-1_17_39847236_C_A_+ AAAGGGCCAGCGCTTG-1 17 39847236 C A + 1 1 C>A C>A +AAGAACAGTAAGATAC-1_7_81888791_G_A_- AAGAACAGTAAGATAC-1 7 81888791 G A - 1 1 G>A C>T +AAGACTCAGTGAATAC-1_5_108371164_A_G_+ AAGACTCAGTGAATAC-1 5 108371164 A G + 1 1 A>G A>G +AAAGGATAGTTCCGGC-1_5_74199344_G_A_+ AAAGGATAGTTCCGGC-1 5 74199344 G A + 1 1 G>A G>A +AAGATAGCAATAACGA-1_11_77978906_A_G_+ AAGATAGCAATAACGA-1 11 77978906 A G + 1 1 A>G A>G +AAGAACATCATAGGCT-1_11_57329934_C_T_+ AAGAACATCATAGGCT-1 11 57329934 C T + 1 1 C>T C>T +AACCACACAGCTGAGA-1_12_69963844_C_T_+ AACCACACAGCTGAGA-1 12 69963844 C T + 1 1 C>T C>T +AAGACAAAGAGTTCGG-1_MT_8215_C_A_+ AAGACAAAGAGTTCGG-1 MT 8215 C A + 1 1 C>A C>A +AACCTGAAGAGATGCC-1_11_97509391_G_A_- AACCTGAAGAGATGCC-1 11 97509391 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_11_30099584_G_A_- AAACGCTCAGTAGGAC-1 11 30099584 G A - 1 1 G>A C>T +AAATGGATCCCTTGTG-1_12_67129901_G_C_- AAATGGATCCCTTGTG-1 12 67129901 G C - 1 1 G>C C>G +AAGATAGCACGCGTGT-1_10_108583160_A_C_- AAGATAGCACGCGTGT-1 10 108583160 A C - 1 1 A>C T>G +AAACGCTCAGTAGGAC-1_17_24721085_T_C_+ AAACGCTCAGTAGGAC-1 17 24721085 T C + 1 1 T>C T>C +AACCTGAAGGTAGACC-1_5_108434334_G_A_- AACCTGAAGGTAGACC-1 5 108434334 G A - 1 1 G>A C>T +AACCCAATCTTGCAAG-1_17_24721712_C_T_+ AACCCAATCTTGCAAG-1 17 24721712 C T + 1 1 C>T C>T +AACCATGGTTTCGTGA-1_17_39847403_T_G_+ AACCATGGTTTCGTGA-1 17 39847403 T G + 1 1 T>G T>G +AAAGGGCCAACACAGG-1_13_44869614_A_G_+ AAAGGGCCAACACAGG-1 13 44869614 A G + 1 1 A>G A>G +AAGAACATCTCCGAAA-1_19_5802188_T_A_- AAGAACATCTCCGAAA-1 19 5802188 T A - 1 4 T>A A>T +AAAGTCCAGCGGACAT-1_6_88513708_T_A_- AAAGTCCAGCGGACAT-1 6 88513708 T A - 1 1 T>A A>T +AAGAACAAGGGTTTCT-1_2_4037287_T_G_+ AAGAACAAGGGTTTCT-1 2 4037287 T G + 1 1 T>G T>G +AACTTCTCATGAATAG-1_10_109010625_T_C_- AACTTCTCATGAATAG-1 10 109010625 T C - 1 1 T>C A>G +AACCTTTAGACCAGAC-1_19_41063605_A_C_- AACCTTTAGACCAGAC-1 19 41063605 A C - 1 1 A>C T>G +AAAGGGCCAACCAATC-1_17_39847607_T_C_- AAAGGGCCAACCAATC-1 17 39847607 T C - 1 1 T>C A>G +AAGAACAAGAAGGGAT-1_5_146261122_A_G_+ AAGAACAAGAAGGGAT-1 5 146261122 A G + 1 1 A>G A>G +AAGAACATCTCCGAAA-1_4_102262800_T_C_+ AAGAACATCTCCGAAA-1 4 102262800 T C + 1 1 T>C T>C +AACTTCTAGCAGATAT-1_1_158356239_G_A_- AACTTCTAGCAGATAT-1 1 158356239 G A - 1 1 G>A C>T +AACAAAGAGGTGCGAT-1_5_112419347_A_T_- AACAAAGAGGTGCGAT-1 5 112419347 A T - 1 1 A>T T>A +AAAGTCCTCCGATGCG-1_6_149326317_C_A_+ AAAGTCCTCCGATGCG-1 6 149326317 C A + 1 1 C>A C>A +AAGAACACACCGTGCA-1_14_26478981_G_A_- AAGAACACACCGTGCA-1 14 26478981 G A - 1 1 G>A C>T +AACTTCTCATGAATAG-1_12_90332715_C_T_+ AACTTCTCATGAATAG-1 12 90332715 C T + 1 1 C>T C>T +AAGACTCTCGAGTACT-1_6_120795352_G_A_- AAGACTCTCGAGTACT-1 6 120795352 G A - 1 1 G>A C>T +AACAGGGCAGATTTCG-1_MT_9184_A_G_+ AACAGGGCAGATTTCG-1 MT 9184 A G + 1 1 A>G A>G +AACGAAAAGAACAAGG-1_7_103826678_T_C_- AACGAAAAGAACAAGG-1 7 103826678 T C - 1 22 T>C A>G +AACAACCGTATGTCTG-1_16_17651302_C_T_- AACAACCGTATGTCTG-1 16 17651302 C T - 1 1 C>T G>A +AACCAACAGCTAGAAT-1_17_39848018_C_T_+ AACCAACAGCTAGAAT-1 17 39848018 C T + 1 1 C>T C>T +AACAAGACATCCGTTC-1_12_53311466_G_A_+ AACAAGACATCCGTTC-1 12 53311466 G A + 1 1 G>A G>A +AACGGGAAGTTGCCCG-1_4_122885614_A_G_- AACGGGAAGTTGCCCG-1 4 122885614 A G - 1 1 A>G T>C +AAAGTCCTCTGCGATA-1_10_80404204_C_G_- AAAGTCCTCTGCGATA-1 10 80404204 C G - 1 1 C>G G>C +AAAGGGCCAACACAGG-1_1_37417355_A_G_- AAAGGGCCAACACAGG-1 1 37417355 A G - 1 1 A>G T>C +AACAGGGGTATGTCTG-1_17_39848018_C_T_+ AACAGGGGTATGTCTG-1 17 39848018 C T + 1 1 C>T C>T +AAAGGTAGTCAACCAT-1_14_65981331_C_T_+ AAAGGTAGTCAACCAT-1 14 65981331 C T + 1 1 C>T C>T +AACCTGACACTCTGCT-1_16_57391688_T_G_- AACCTGACACTCTGCT-1 16 57391688 T G - 1 1 T>G A>C +AACCTGATCTTCGTGC-1_3_103791040_G_A_- AACCTGATCTTCGTGC-1 3 103791040 G A - 1 1 G>A C>T +AACGTCAAGCGAGGAG-1_19_9113186_A_G_- AACGTCAAGCGAGGAG-1 19 9113186 A G - 1 1 A>G T>C +AAAGTCCTCTTCCCGA-1_11_77978989_C_G_+ AAAGTCCTCTTCCCGA-1 11 77978989 C G + 1 1 C>G C>G +AACAAGAAGTAAACTG-1_1_156366506_C_A_+ AACAAGAAGTAAACTG-1 1 156366506 C A + 1 1 C>A C>A +AACGAAATCCTGTAAG-1_17_39847607_T_C_- AACGAAATCCTGTAAG-1 17 39847607 T C - 1 1 T>C A>G +AACACACAGGATCACG-1_8_111192663_T_C_- AACACACAGGATCACG-1 8 111192663 T C - 1 1 T>C A>G +AAACGCTGTCCACATA-1_9_3003361_C_T_- AAACGCTGTCCACATA-1 9 3003361 C T - 1 1 C>T G>A +AACAAGAAGGTTCAGG-1_5_146261076_T_C_+ AACAAGAAGGTTCAGG-1 5 146261076 T C + 1 1 T>C T>C +AAGAACACAAAGGTTA-1_9_70554648_T_C_+ AAGAACACAAAGGTTA-1 9 70554648 T C + 1 1 T>C T>C +AAAGGGCTCTCACTCG-1_7_15917293_G_T_- AAAGGGCTCTCACTCG-1 7 15917293 G T - 1 1 G>T C>A +AACCAACCAGATCCAT-1_7_126780159_A_T_+ AACCAACCAGATCCAT-1 7 126780159 A T + 1 1 A>T A>T +AACGTCAAGAACTCCT-1_9_3035162_C_A_- AACGTCAAGAACTCCT-1 9 3035162 C A - 1 2 C>A G>T +AACAACCCAGACCAAG-1_9_58162103_T_C_- AACAACCCAGACCAAG-1 9 58162103 T C - 1 1 T>C A>G +AACCCAAAGCGATCGA-1_16_57391454_T_C_- AACCCAAAGCGATCGA-1 16 57391454 T C - 1 1 T>C A>G +AAAGGTAAGACTTCAC-1_17_39847607_T_C_+ AAAGGTAAGACTTCAC-1 17 39847607 T C + 1 1 T>C T>C +AACCTTTCAGACCTGC-1_8_68357059_C_A_- AACCTTTCAGACCTGC-1 8 68357059 C A - 1 1 C>A G>T +AACGGGAGTGAGCTCC-1_17_39847607_T_C_- AACGGGAGTGAGCTCC-1 17 39847607 T C - 1 1 T>C A>G +AACAACCGTCTCAGAT-1_3_136935362_C_A_+ AACAACCGTCTCAGAT-1 3 136935362 C A + 1 1 C>A C>A +AAGAACATCGAACCTA-1_17_39847458_A_G_- AAGAACATCGAACCTA-1 17 39847458 A G - 1 1 A>G T>C +AACCAACGTGGTATGG-1_6_47956436_T_C_+ AACCAACGTGGTATGG-1 6 47956436 T C + 1 1 T>C T>C +AACAACCGTCATCGGC-1_8_70895951_C_T_- AACAACCGTCATCGGC-1 8 70895951 C T - 1 1 C>T G>A +AACCTTTCAGAGTAAT-1_4_6395596_C_T_+ AACCTTTCAGAGTAAT-1 4 6395596 C T + 1 1 C>T C>T +AAACGAAAGACAACAT-1_7_30300679_A_G_+ AAACGAAAGACAACAT-1 7 30300679 A G + 1 1 A>G A>G +AACCTGACACACAGAG-1_16_57391679_G_T_- AACCTGACACACAGAG-1 16 57391679 G T - 1 1 G>T C>A +AACGTCAAGTTCGCAT-1_17_39848018_C_T_+ AACGTCAAGTTCGCAT-1 17 39848018 C T + 2 2 C>T C>T +AACCAACTCGATGGAG-1_11_93902336_C_A_+ AACCAACTCGATGGAG-1 11 93902336 C A + 1 1 C>A C>A +AACACACTCTGCGGAC-1_4_140514781_C_A_- AACACACTCTGCGGAC-1 4 140514781 C A - 1 1 C>A G>T +AAACCCACACCGTGGT-1_10_62108209_C_T_- AAACCCACACCGTGGT-1 10 62108209 C T - 1 1 C>T G>A +AACAACCAGTAATACG-1_1_182816488_C_G_+ AACAACCAGTAATACG-1 1 182816488 C G + 1 1 C>G C>G +AACCTGATCTTCGTGC-1_18_73592411_T_A_+ AACCTGATCTTCGTGC-1 18 73592411 T A + 1 1 T>A T>A +AAGAACATCTCCGAAA-1_2_60068840_C_T_- AAGAACATCTCCGAAA-1 2 60068840 C T - 1 1 C>T G>A +AACCTGACAAGTGACG-1_11_62552986_G_A_+ AACCTGACAAGTGACG-1 11 62552986 G A + 1 1 G>A G>A +AACGAAACAACTACGT-1_11_87979684_A_G_- AACGAAACAACTACGT-1 11 87979684 A G - 1 1 A>G T>C +AAACGCTGTGGACAGT-1_2_158375841_A_T_+ AAACGCTGTGGACAGT-1 2 158375841 A T + 1 1 A>T A>T +AAAGAACCAGCGACCT-1_17_39847192_C_T_+ AAAGAACCAGCGACCT-1 17 39847192 C T + 1 1 C>T C>T +AAACGCTCAGTAGGAC-1_17_35238706_C_T_+ AAACGCTCAGTAGGAC-1 17 35238706 C T + 1 1 C>T C>T +AAACGAAGTATCATGC-1_17_39847303_A_C_- AAACGAAGTATCATGC-1 17 39847303 A C - 1 1 A>C T>G +AAAGTCCTCCGATGCG-1_X_136838188_A_G_+ AAAGTCCTCCGATGCG-1 X 136838188 A G + 1 3 A>G A>G +AACTTCTAGATACGAT-1_17_39847058_C_T_+ AACTTCTAGATACGAT-1 17 39847058 C T + 1 1 C>T C>T +AAAGTGAAGACATAAC-1_11_77529398_G_A_- AAAGTGAAGACATAAC-1 11 77529398 G A - 1 1 G>A C>T +AACTTCTAGGGATCTG-1_19_5107949_C_G_- AACTTCTAGGGATCTG-1 19 5107949 C G - 1 1 C>G G>C +AAATGGAAGCAGATAT-1_7_16915433_G_A_- AAATGGAAGCAGATAT-1 7 16915433 G A - 1 1 G>A C>T +AAACCCAAGTTTAGGA-1_8_122433705_C_T_- AAACCCAAGTTTAGGA-1 8 122433705 C T - 1 1 C>T G>A +AACCACAAGCCTTTCC-1_9_40802033_C_T_+ AACCACAAGCCTTTCC-1 9 40802033 C T + 1 1 C>T C>T +AACAACCGTTGCAACT-1_10_3946259_C_G_+ AACAACCGTTGCAACT-1 10 3946259 C G + 1 1 C>G C>G +AAACCCACAATTGCGT-1_2_170360601_C_T_- AAACCCACAATTGCGT-1 2 170360601 C T - 1 1 C>T G>A +AAAGGGCGTTCCAAAC-1_7_87648391_A_G_+ AAAGGGCGTTCCAAAC-1 7 87648391 A G + 1 1 A>G A>G +AACTTCTAGAGAACCC-1_17_39847091_T_C_+ AACTTCTAGAGAACCC-1 17 39847091 T C + 1 1 T>C T>C +AACTTCTGTAGTCGGA-1_5_134620075_G_A_- AACTTCTGTAGTCGGA-1 5 134620075 G A - 1 1 G>A C>T +AACAAAGCAATCAGCT-1_2_42353648_C_T_- AACAAAGCAATCAGCT-1 2 42353648 C T - 1 1 C>T G>A +AACCCAAGTTTCCATT-1_15_79786463_G_A_- AACCCAAGTTTCCATT-1 15 79786463 G A - 1 1 G>A C>T +AAGAACAGTTGGAGGT-1_5_81795208_G_T_- AAGAACAGTTGGAGGT-1 5 81795208 G T - 1 1 G>T C>A +AAGACTCTCCATAGAC-1_17_39847426_T_C_- AAGACTCTCCATAGAC-1 17 39847426 T C - 1 1 T>C A>G +AAAGAACAGTCCCGGT-1_MT_4568_C_T_+ AAAGAACAGTCCCGGT-1 MT 4568 C T + 1 1 C>T C>T +AAGAACAGTACGTAGG-1_2_42189633_C_G_- AAGAACAGTACGTAGG-1 2 42189633 C G - 1 1 C>G G>C +AAACCCACACCGTGGT-1_X_136066745_G_A_- AAACCCACACCGTGGT-1 X 136066745 G A - 1 1 G>A C>T +AACAACCAGTAATACG-1_5_31622428_T_C_+ AACAACCAGTAATACG-1 5 31622428 T C + 1 1 T>C T>C +AACCTGAAGTCCCAGC-1_16_91729924_C_T_+ AACCTGAAGTCCCAGC-1 16 91729924 C T + 1 1 C>T C>T +AACGTCATCTACTTCA-1_9_3027188_T_C_- AACGTCATCTACTTCA-1 9 3027188 T C - 1 1 T>C A>G +AACTTCTAGAGAACCC-1_9_3024527_T_C_- AACTTCTAGAGAACCC-1 9 3024527 T C - 1 1 T>C A>G +AACCTTTTCACCATCC-1_16_57391592_C_T_- AACCTTTTCACCATCC-1 16 57391592 C T - 1 1 C>T G>A +AACGAAAAGCACAAAT-1_14_55662478_G_A_- AACGAAAAGCACAAAT-1 14 55662478 G A - 1 1 G>A C>T +AAACGCTGTTTGACAC-1_6_72360589_G_A_- AAACGCTGTTTGACAC-1 6 72360589 G A - 1 1 G>A C>T +AAAGGATCATGAAGCG-1_17_39848100_A_T_+ AAAGGATCATGAAGCG-1 17 39848100 A T + 1 1 A>T A>T +AAAGGGCCACTAGGTT-1_16_32107931_A_G_+ AAAGGGCCACTAGGTT-1 16 32107931 A G + 1 1 A>G A>G +AACCTTTCATCGCTGG-1_17_39847458_A_G_+ AACCTTTCATCGCTGG-1 17 39847458 A G + 1 1 A>G A>G +AAGAACAGTTGGAGGT-1_19_5664749_C_G_- AAGAACAGTTGGAGGT-1 19 5664749 C G - 1 1 C>G G>C +AACCCAAGTTTCCATT-1_3_153396717_A_C_- AACCCAAGTTTCCATT-1 3 153396717 A C - 1 1 A>C T>G +AACCTTTAGACCAGAC-1_17_14949002_G_A_- AACCTTTAGACCAGAC-1 17 14949002 G A - 1 1 G>A C>T +AAAGGTAGTACACGCC-1_16_57391454_T_C_- AAAGGTAGTACACGCC-1 16 57391454 T C - 1 1 T>C A>G +AACCTGACATCGTCCT-1_10_93241226_C_T_+ AACCTGACATCGTCCT-1 10 93241226 C T + 1 1 C>T C>T +AACCACAAGTTGCCTA-1_19_5802082_C_A_- AACCACAAGTTGCCTA-1 19 5802082 C A - 1 3 C>A G>T +AAACGAAGTGGCAGAT-1_16_57391587_G_C_- AAACGAAGTGGCAGAT-1 16 57391587 G C - 1 1 G>C C>G +AACAACCAGTAATACG-1_MT_3514_A_G_+ AACAACCAGTAATACG-1 MT 3514 A G + 1 1 A>G A>G +AACAACCGTCTCAGAT-1_17_39848100_A_T_+ AACAACCGTCTCAGAT-1 17 39848100 A T + 1 1 A>T A>T +AAATGGAAGACACACG-1_12_55684061_T_C_- AAATGGAAGACACACG-1 12 55684061 T C - 1 1 T>C A>G +AACTTCTCATGAATAG-1_9_121490048_A_G_- AACTTCTCATGAATAG-1 9 121490048 A G - 1 1 A>G T>C +AACAAAGCAATCAGCT-1_X_83009708_A_T_+ AACAAAGCAATCAGCT-1 X 83009708 A T + 1 1 A>T A>T +AACGGGAGTTGTGCCG-1_MT_7459_A_G_+ AACGGGAGTTGTGCCG-1 MT 7459 A G + 1 1 A>G A>G +AACCAACAGCTACTGT-1_19_47083460_C_A_+ AACCAACAGCTACTGT-1 19 47083460 C A + 1 1 C>A C>A +AACCAACTCCCAAGCG-1_5_146261122_A_G_+ AACCAACTCCCAAGCG-1 5 146261122 A G + 1 1 A>G A>G +AAACCCAGTTCTGACA-1_2_5379370_T_G_- AAACCCAGTTCTGACA-1 2 5379370 T G - 1 1 T>G A>C +AAGACAAAGGATACCG-1_10_59324756_G_A_+ AAGACAAAGGATACCG-1 10 59324756 G A + 1 1 G>A G>A +AAAGGTAAGACTTCAC-1_5_48802857_G_T_- AAAGGTAAGACTTCAC-1 5 48802857 G T - 1 1 G>T C>A +AACAAGAGTGGCGTAA-1_17_39847149_C_T_+ AACAAGAGTGGCGTAA-1 17 39847149 C T + 1 1 C>T C>T +AAACGCTAGGTTACAA-1_16_52251220_G_A_- AAACGCTAGGTTACAA-1 16 52251220 G A - 1 1 G>A C>T +AAACGCTAGGCTCACC-1_16_33057509_G_A_+ AAACGCTAGGCTCACC-1 16 33057509 G A + 1 1 G>A G>A +AAACGAAAGCGAACTG-1_5_115345809_G_A_- AAACGAAAGCGAACTG-1 5 115345809 G A - 1 1 G>A C>T +AACGAAACAACTCGAT-1_X_160122481_G_A_- AACGAAACAACTCGAT-1 X 160122481 G A - 1 1 G>A C>T +AACCAACAGGCCCACT-1_2_5379332_A_T_- AACCAACAGGCCCACT-1 2 5379332 A T - 1 1 A>T T>A +AACCTGACATCGTCCT-1_7_144921024_C_T_+ AACCTGACATCGTCCT-1 7 144921024 C T + 1 1 C>T C>T +AAGACTCGTTGCTCGG-1_5_129882439_C_T_- AAGACTCGTTGCTCGG-1 5 129882439 C T - 1 1 C>T G>A +AACAAAGTCCCGTGTT-1_9_3037763_C_T_- AACAAAGTCCCGTGTT-1 9 3037763 C T - 1 1 C>T G>A +AACAAAGTCGTCGGGT-1_3_58674996_G_A_- AACAAAGTCGTCGGGT-1 3 58674996 G A - 1 1 G>A C>T +AAACCCACAGCTGTGC-1_9_64709079_C_T_+ AAACCCACAGCTGTGC-1 9 64709079 C T + 1 1 C>T C>T +AAAGGTAGTACACGCC-1_4_133491395_G_A_- AAAGGTAGTACACGCC-1 4 133491395 G A - 1 1 G>A C>T +AACAGGGTCGGTCGGT-1_16_57391685_G_A_- AACAGGGTCGGTCGGT-1 16 57391685 G A - 1 1 G>A C>T +AACGGGAAGTTGCCCG-1_4_56957274_G_A_- AACGGGAAGTTGCCCG-1 4 56957274 G A - 1 1 G>A C>T +AACCACAAGCTTTGTG-1_3_8554884_C_T_+ AACCACAAGCTTTGTG-1 3 8554884 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_15_99497219_G_A_- AACCACAAGCTTTGTG-1 15 99497219 G A - 1 1 G>A C>T +AAGACTCTCCATAGAC-1_17_39847458_A_G_- AAGACTCTCCATAGAC-1 17 39847458 A G - 1 1 A>G T>C +AAGAACAGTAAGATAC-1_17_47505821_G_A_+ AAGAACAGTAAGATAC-1 17 47505821 G A + 1 1 G>A G>A +AAGACTCAGAAGCTCG-1_11_62536939_C_T_- AAGACTCAGAAGCTCG-1 11 62536939 C T - 1 1 C>T G>A +AAACGCTCAGTAGGAC-1_4_117155098_G_A_- AAACGCTCAGTAGGAC-1 4 117155098 G A - 1 1 G>A C>T +AAACGAAAGGCTTTCA-1_12_111541450_G_T_+ AAACGAAAGGCTTTCA-1 12 111541450 G T + 1 1 G>T G>T +AACGTCACACTCCTTG-1_7_126795653_T_C_- AACGTCACACTCCTTG-1 7 126795653 T C - 1 1 T>C A>G +AAAGGTAGTGACGTCC-1_5_135790307_T_G_+ AAAGGTAGTGACGTCC-1 5 135790307 T G + 1 1 T>G T>G +AAATGGATCACGGTCG-1_9_120130781_T_A_+ AAATGGATCACGGTCG-1 9 120130781 T A + 1 1 T>A T>A +AACACACTCTGCGGAC-1_11_20302265_A_T_- AACACACTCTGCGGAC-1 11 20302265 A T - 1 1 A>T T>A +AACGGGATCCGCAACG-1_9_37544533_G_A_- AACGGGATCCGCAACG-1 9 37544533 G A - 1 1 G>A C>T +AAAGTGACAAATGGCG-1_4_41291339_G_A_- AAAGTGACAAATGGCG-1 4 41291339 G A - 1 1 G>A C>T +AAAGGATCACGACAGA-1_15_62097292_C_T_+ AAAGGATCACGACAGA-1 15 62097292 C T + 1 1 C>T C>T +AAAGGATAGATGAAGG-1_2_5293725_T_G_- AAAGGATAGATGAAGG-1 2 5293725 T G - 1 1 T>G A>C +AAGAACACAACTGATC-1_14_63761194_C_A_+ AAGAACACAACTGATC-1 14 63761194 C A + 1 1 C>A C>A +AAAGGGCCAGATAAAC-1_14_65314330_G_T_+ AAAGGGCCAGATAAAC-1 14 65314330 G T + 1 1 G>T G>T +AAAGGATCATTCATCT-1_1_171359053_C_T_+ AAAGGATCATTCATCT-1 1 171359053 C T + 1 1 C>T C>T +AACGTCAAGCGAGGAG-1_4_130781370_A_G_+ AACGTCAAGCGAGGAG-1 4 130781370 A G + 1 1 A>G A>G +AACCTTTCATTGAAAG-1_7_19696435_T_C_- AACCTTTCATTGAAAG-1 7 19696435 T C - 1 1 T>C A>G +AACTTCTCAGGACTTT-1_13_32808249_T_C_+ AACTTCTCAGGACTTT-1 13 32808249 T C + 1 1 T>C T>C +AACCTGACAAGTGACG-1_19_5802155_C_A_- AACCTGACAAGTGACG-1 19 5802155 C A - 1 2 C>A G>T +AAAGGTATCACTGAAC-1_2_63123978_C_A_- AAAGGTATCACTGAAC-1 2 63123978 C A - 1 1 C>A G>T +AACACACAGATGGCAC-1_16_23235147_G_C_+ AACACACAGATGGCAC-1 16 23235147 G C + 1 1 G>C G>C +AACCACATCGTCAGAT-1_13_69634140_C_T_+ AACCACATCGTCAGAT-1 13 69634140 C T + 1 1 C>T C>T +AACGTCATCTGGCTGG-1_10_57515985_G_A_- AACGTCATCTGGCTGG-1 10 57515985 G A - 1 1 G>A C>T +AACAACCAGTAATACG-1_5_142903250_G_A_- AACAACCAGTAATACG-1 5 142903250 G A - 1 1 G>A C>T +AAACCCACAAAGACGC-1_17_29100520_C_T_+ AAACCCACAAAGACGC-1 17 29100520 C T + 1 1 C>T C>T +AAGACTCCAACACAGG-1_X_136837695_A_G_+ AAGACTCCAACACAGG-1 X 136837695 A G + 1 1 A>G A>G +AACCATGGTCATACCA-1_17_39848016_G_A_+ AACCATGGTCATACCA-1 17 39848016 G A + 1 1 G>A G>A +AACCACAAGTTGCCTA-1_X_136836339_C_G_+ AACCACAAGTTGCCTA-1 X 136836339 C G + 1 1 C>G C>G +AAGATAGGTCATCAGT-1_MT_3528_A_G_+ AAGATAGGTCATCAGT-1 MT 3528 A G + 1 2 A>G A>G +AACCTTTCAGCACAGA-1_19_5802597_C_A_- AACCTTTCAGCACAGA-1 19 5802597 C A - 1 1 C>A G>T +AAACGCTTCGGTTAGT-1_11_121515038_C_G_+ AAACGCTTCGGTTAGT-1 11 121515038 C G + 1 1 C>G C>G +AACGAAACACAACATC-1_5_108434345_T_C_- AACGAAACACAACATC-1 5 108434345 T C - 1 1 T>C A>G +AACCTGACACTCTGCT-1_16_57391680_C_T_- AACCTGACACTCTGCT-1 16 57391680 C T - 1 1 C>T G>A +AACTTCTTCACTTCTA-1_17_39847291_G_A_+ AACTTCTTCACTTCTA-1 17 39847291 G A + 1 1 G>A G>A +AAAGGATCATTCAGGT-1_MT_14058_T_G_- AAAGGATCATTCAGGT-1 MT 14058 T G - 1 1 T>G A>C +AAAGGTATCAGTCATG-1_13_59608787_C_T_+ AAAGGTATCAGTCATG-1 13 59608787 C T + 1 1 C>T C>T +AACAAAGGTTCAAACC-1_9_3037748_A_T_- AACAAAGGTTCAAACC-1 9 3037748 A T - 1 1 A>T T>A +AACGTCACAAGAATGT-1_7_123193750_G_A_+ AACGTCACAAGAATGT-1 7 123193750 G A + 1 1 G>A G>A +AACAACCAGTAATACG-1_11_24167142_T_C_+ AACAACCAGTAATACG-1 11 24167142 T C + 1 1 T>C T>C +AACGGGAGTGAGCTCC-1_14_63143012_C_T_+ AACGGGAGTGAGCTCC-1 14 63143012 C T + 1 1 C>T C>T +AACCTGACATCGTCCT-1_X_12616600_C_T_+ AACCTGACATCGTCCT-1 X 12616600 C T + 1 1 C>T C>T +AACTTCTTCTTCACGC-1_2_80353332_C_T_+ AACTTCTTCTTCACGC-1 2 80353332 C T + 1 1 C>T C>T +AAAGTCCCACAAATGA-1_7_109519598_G_A_+ AAAGTCCCACAAATGA-1 7 109519598 G A + 1 1 G>A G>A +AAAGGTAAGGAACGTC-1_6_54892456_C_T_+ AAAGGTAAGGAACGTC-1 6 54892456 C T + 1 1 C>T C>T +AAAGGTACACCGTGCA-1_X_167207457_A_T_- AAAGGTACACCGTGCA-1 X 167207457 A T - 1 1 A>T T>A +AACCTGACACCAACAT-1_17_39847198_C_T_+ AACCTGACACCAACAT-1 17 39847198 C T + 1 2 C>T C>T +AAACGCTCAGTAGGAC-1_15_103299560_C_T_+ AAACGCTCAGTAGGAC-1 15 103299560 C T + 1 1 C>T C>T +AAAGGATAGATGAAGG-1_5_77087226_T_C_- AAAGGATAGATGAAGG-1 5 77087226 T C - 1 1 T>C A>G +AACCACATCGTCAGAT-1_5_146261113_T_C_+ AACCACATCGTCAGAT-1 5 146261113 T C + 1 1 T>C T>C +AAACCCATCGGATAAA-1_19_41211098_A_G_- AAACCCATCGGATAAA-1 19 41211098 A G - 1 1 A>G T>C +AACGTCACAAAGAGTT-1_17_39848018_C_T_+ AACGTCACAAAGAGTT-1 17 39848018 C T + 1 1 C>T C>T +AACTTCTTCTTCACGC-1_19_7426023_G_A_- AACTTCTTCTTCACGC-1 19 7426023 G A - 1 1 G>A C>T +AACCAACAGGCCCACT-1_2_5379342_T_C_- AACCAACAGGCCCACT-1 2 5379342 T C - 1 1 T>C A>G +AACTTCTTCTTCACGC-1_10_72674744_C_G_+ AACTTCTTCTTCACGC-1 10 72674744 C G + 1 1 C>G C>G +AACCTGAAGTCCCAGC-1_11_55394715_G_A_- AACCTGAAGTCCCAGC-1 11 55394715 G A - 1 1 G>A C>T +AAGAACACACAAGCCC-1_2_148872040_C_T_- AAGAACACACAAGCCC-1 2 148872040 C T - 1 1 C>T G>A +AACCAACGTGGTATGG-1_14_21796764_A_G_+ AACCAACGTGGTATGG-1 14 21796764 A G + 1 1 A>G A>G +AAACCCAGTCGTCTCT-1_9_64177745_C_T_+ AAACCCAGTCGTCTCT-1 9 64177745 C T + 1 1 C>T C>T +AAAGTCCTCTTCCCGA-1_2_77553917_T_C_- AAAGTCCTCTTCCCGA-1 2 77553917 T C - 1 1 T>C A>G +AACCTGAAGTCCCAGC-1_7_30417370_A_C_+ AACCTGAAGTCCCAGC-1 7 30417370 A C + 1 1 A>C A>C +AACTTCTGTGCATGTT-1_16_57391677_C_G_- AACTTCTGTGCATGTT-1 16 57391677 C G - 1 1 C>G G>C +AACCTGAAGGTCATTC-1_17_39847177_A_G_+ AACCTGAAGGTCATTC-1 17 39847177 A G + 1 1 A>G A>G +AAAGTCCAGTCGGCCT-1_X_7653128_C_T_+ AAAGTCCAGTCGGCCT-1 X 7653128 C T + 1 1 C>T C>T +AACCTGACAAGTGACG-1_3_95630641_T_C_+ AACCTGACAAGTGACG-1 3 95630641 T C + 1 1 T>C T>C +AAAGGTAGTGACGTCC-1_17_39847403_T_G_+ AAAGGTAGTGACGTCC-1 17 39847403 T G + 1 1 T>G T>G +AACCCAAGTGTCATCA-1_MT_10536_G_C_+ AACCCAAGTGTCATCA-1 MT 10536 G C + 1 1 G>C G>C +AAAGTGAGTTCTGACA-1_6_106698993_C_T_+ AAAGTGAGTTCTGACA-1 6 106698993 C T + 1 1 C>T C>T +AAGAACAGTTCGGTTA-1_17_39848018_C_T_+ AAGAACAGTTCGGTTA-1 17 39848018 C T + 1 1 C>T C>T +AACTTCTTCTTCACGC-1_4_116699312_C_T_+ AACTTCTTCTTCACGC-1 4 116699312 C T + 1 1 C>T C>T +AACCAACAGTATCTGC-1_16_57391679_G_T_- AACCAACAGTATCTGC-1 16 57391679 G T - 1 1 G>T C>A +AAACCCAAGGTAGACC-1_17_39847403_T_G_+ AAACCCAAGGTAGACC-1 17 39847403 T G + 1 1 T>G T>G +AACACACGTTTGTTCT-1_7_44359514_G_T_+ AACACACGTTTGTTCT-1 7 44359514 G T + 1 1 G>T G>T +AAAGGATCACGCTGCA-1_2_164018332_C_T_+ AAAGGATCACGCTGCA-1 2 164018332 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_1_180437710_G_A_- AACCACAAGCTTTGTG-1 1 180437710 G A - 1 1 G>A C>T +AAGAACACACTAGGTT-1_4_25609429_G_A_- AAGAACACACTAGGTT-1 4 25609429 G A - 1 1 G>A C>T +AAACCCATCGGATAAA-1_17_39843824_C_G_+ AAACCCATCGGATAAA-1 17 39843824 C G + 1 1 C>G C>G +AACAGGGTCGGTCGGT-1_12_40846766_C_T_+ AACAGGGTCGGTCGGT-1 12 40846766 C T + 1 1 C>T C>T +AACTTCTCACTAACGT-1_10_108262584_T_A_+ AACTTCTCACTAACGT-1 10 108262584 T A + 1 1 T>A T>A +AACCTGACACTTGAGT-1_16_18152266_A_C_+ AACCTGACACTTGAGT-1 16 18152266 A C + 1 1 A>C A>C +AAGACTCGTGGTACAG-1_17_66494798_G_A_- AAGACTCGTGGTACAG-1 17 66494798 G A - 1 1 G>A C>T +AACACACGTCCCACGA-1_11_29742679_C_T_+ AACACACGTCCCACGA-1 11 29742679 C T + 1 1 C>T C>T +AAAGTGATCCGCTGTT-1_17_39847458_A_G_- AAAGTGATCCGCTGTT-1 17 39847458 A G - 1 1 A>G T>C +AAGAACAGTCCTGGTG-1_13_74032234_C_T_+ AAGAACAGTCCTGGTG-1 13 74032234 C T + 1 1 C>T C>T +AACGAAACAGCGTATT-1_11_51985662_G_A_- AACGAAACAGCGTATT-1 11 51985662 G A - 1 1 G>A C>T +AACAAAGGTTTGACAC-1_12_99645608_T_C_+ AACAAAGGTTTGACAC-1 12 99645608 T C + 1 1 T>C T>C +AAAGAACCACTCCGAG-1_6_23588017_G_A_- AAAGAACCACTCCGAG-1 6 23588017 G A - 1 1 G>A C>T +AAATGGAAGTCGGCCT-1_5_146261076_T_C_+ AAATGGAAGTCGGCCT-1 5 146261076 T C + 1 1 T>C T>C +AACTTCTCACACGTGC-1_2_4642625_A_G_- AACTTCTCACACGTGC-1 2 4642625 A G - 1 1 A>G T>C +AACCCAAAGCAAATGT-1_7_118736802_G_C_+ AACCCAAAGCAAATGT-1 7 118736802 G C + 1 1 G>C G>C +AAACCCAGTCGTCTCT-1_MT_9211_G_A_+ AAACCCAGTCGTCTCT-1 MT 9211 G A + 1 1 G>A G>A +AAACGCTGTCATGGCC-1_9_3037739_C_A_- AAACGCTGTCATGGCC-1 9 3037739 C A - 1 1 C>A G>T +AACCATGGTCATACCA-1_6_82647038_T_C_- AACCATGGTCATACCA-1 6 82647038 T C - 1 1 T>C A>G +AAAGTCCAGTCGGCCT-1_10_80294011_C_T_+ AAAGTCCAGTCGGCCT-1 10 80294011 C T + 1 1 C>T C>T +AAACGAAAGTGGACTG-1_17_83512040_T_C_- AAACGAAAGTGGACTG-1 17 83512040 T C - 1 1 T>C A>G +AACAAGAAGTAAACTG-1_19_5802632_T_A_- AACAAGAAGTAAACTG-1 19 5802632 T A - 1 2 T>A A>T +AAACCCACAGCAGTCC-1_4_120985196_T_C_- AAACCCACAGCAGTCC-1 4 120985196 T C - 1 1 T>C A>G +AAAGGTAGTATGTGTC-1_1_135371243_A_G_- AAAGGTAGTATGTGTC-1 1 135371243 A G - 1 1 A>G T>C +AAGAACAGTTCGGTTA-1_3_103057601_C_A_+ AAGAACAGTTCGGTTA-1 3 103057601 C A + 1 1 C>A C>A +AAAGGATCATTCAGGT-1_6_49258828_C_A_- AAAGGATCATTCAGGT-1 6 49258828 C A - 1 1 C>A G>T +AAAGGATAGAGGTCGT-1_7_127197825_G_A_- AAAGGATAGAGGTCGT-1 7 127197825 G A - 1 1 G>A C>T +AACTTCTTCTTCACGC-1_10_60302203_C_T_+ AACTTCTTCTTCACGC-1 10 60302203 C T + 1 1 C>T C>T +AAGACTCGTGGTACAG-1_7_27532140_G_A_- AAGACTCGTGGTACAG-1 7 27532140 G A - 1 1 G>A C>T +AACCAACAGCTACTGT-1_2_91308361_T_C_- AACCAACAGCTACTGT-1 2 91308361 T C - 1 1 T>C A>G +AAACCCACATATCTGG-1_17_24854305_C_A_+ AAACCCACATATCTGG-1 17 24854305 C A + 1 1 C>A C>A +AACCAACGTGCCTAAT-1_13_46649387_T_A_+ AACCAACGTGCCTAAT-1 13 46649387 T A + 1 1 T>A T>A +AACCAACGTTCACGAT-1_1_131436719_C_A_- AACCAACGTTCACGAT-1 1 131436719 C A - 1 1 C>A G>T +AACTTCTAGAGGTCGT-1_4_45367277_C_T_+ AACTTCTAGAGGTCGT-1 4 45367277 C T + 1 1 C>T C>T +AACAACCGTATGTCTG-1_7_126795450_T_C_- AACAACCGTATGTCTG-1 7 126795450 T C - 1 1 T>C A>G +AACCCAACATCGGTTA-1_18_31586796_G_A_- AACCCAACATCGGTTA-1 18 31586796 G A - 1 1 G>A C>T +AAGACAATCTTAGGAC-1_X_37085174_G_A_- AAGACAATCTTAGGAC-1 X 37085174 G A - 1 1 G>A C>T +AAAGGTAGTCGAATTC-1_17_39847081_T_C_+ AAAGGTAGTCGAATTC-1 17 39847081 T C + 1 2 T>C T>C +AAAGTCCCACCACATA-1_X_134761275_C_T_+ AAAGTCCCACCACATA-1 X 134761275 C T + 1 1 C>T C>T +AAAGTCCCACCACATA-1_17_33848505_G_A_+ AAAGTCCCACCACATA-1 17 33848505 G A + 1 1 G>A G>A +AACCACAAGGACAGCT-1_12_3997691_A_T_- AACCACAAGGACAGCT-1 12 3997691 A T - 1 1 A>T T>A +AACGTCATCAAGCGTT-1_12_44600103_C_T_+ AACGTCATCAAGCGTT-1 12 44600103 C T + 1 1 C>T C>T +AAGACTCTCTGGGCAC-1_13_119711992_G_A_- AAGACTCTCTGGGCAC-1 13 119711992 G A - 1 1 G>A C>T +AAAGTGATCTCGGCTT-1_9_83145962_T_G_- AAAGTGATCTCGGCTT-1 9 83145962 T G - 1 1 T>G A>C +AACAAAGCAGCATTGT-1_7_16915429_G_C_- AACAAAGCAGCATTGT-1 7 16915429 G C - 1 1 G>C C>G +AACTTCTAGAGGTCGT-1_2_124667552_A_T_+ AACTTCTAGAGGTCGT-1 2 124667552 A T + 1 1 A>T A>T +AACCACATCCTAGCTC-1_5_146261076_T_C_+ AACCACATCCTAGCTC-1 5 146261076 T C + 1 1 T>C T>C +AAAGGATGTCCTGGTG-1_8_123105124_T_C_+ AAAGGATGTCCTGGTG-1 8 123105124 T C + 1 1 T>C T>C +AAGATAGGTCATCAGT-1_16_66661550_T_A_- AAGATAGGTCATCAGT-1 16 66661550 T A - 1 1 T>A A>T +AACTTCTAGCAGATAT-1_18_6112795_C_A_- AACTTCTAGCAGATAT-1 18 6112795 C A - 1 1 C>A G>T +AACCCAAGTATCGATC-1_3_103635123_C_G_+ AACCCAAGTATCGATC-1 3 103635123 C G + 1 1 C>G C>G +AACAAGAGTACGATGG-1_17_39847288_G_C_- AACAAGAGTACGATGG-1 17 39847288 G C - 1 2 G>C C>G +AAAGGTAGTATGCTAC-1_13_94831106_T_C_+ AAAGGTAGTATGCTAC-1 13 94831106 T C + 1 1 T>C T>C +AACCCAAGTATCGATC-1_11_104333658_C_T_- AACCCAAGTATCGATC-1 11 104333658 C T - 1 1 C>T G>A +AACAAAGGTAGGGTAC-1_12_8938547_G_C_+ AACAAAGGTAGGGTAC-1 12 8938547 G C + 1 1 G>C G>C +AAAGAACCAGCAAGAC-1_9_3014268_C_T_- AAAGAACCAGCAAGAC-1 9 3014268 C T - 1 1 C>T G>A +AAATGGACACCCGTAG-1_6_38539329_C_A_+ AAATGGACACCCGTAG-1 6 38539329 C A + 1 1 C>A C>A +AAAGTGATCTCGGCTT-1_11_58991250_C_T_+ AAAGTGATCTCGGCTT-1 11 58991250 C T + 1 1 C>T C>T +AACGGGAGTCAGGCAA-1_15_8354011_T_A_- AACGGGAGTCAGGCAA-1 15 8354011 T A - 1 1 T>A A>T +AAACGCTAGTAGCATA-1_12_90019977_A_G_+ AAACGCTAGTAGCATA-1 12 90019977 A G + 1 1 A>G A>G +AACACACCAGACCAGA-1_16_57391576_T_C_- AACACACCAGACCAGA-1 16 57391576 T C - 1 1 T>C A>G +AACTTCTGTGCATGTT-1_9_3037748_A_T_- AACTTCTGTGCATGTT-1 9 3037748 A T - 1 1 A>T T>A +AACCCAAGTAGCACGA-1_7_30899355_G_T_- AACCCAAGTAGCACGA-1 7 30899355 G T - 1 1 G>T C>A +AAGAACACACCGTGCA-1_17_24721653_C_T_+ AAGAACACACCGTGCA-1 17 24721653 C T + 1 1 C>T C>T +AACCTGACAATAGTAG-1_7_98886917_G_A_- AACCTGACAATAGTAG-1 7 98886917 G A - 1 1 G>A C>T +AACTTCTTCTTCACGC-1_17_4995332_C_A_+ AACTTCTTCTTCACGC-1 17 4995332 C A + 1 1 C>A C>A +AACTTCTCAGAAACCG-1_16_9904976_C_T_- AACTTCTCAGAAACCG-1 16 9904976 C T - 1 1 C>T G>A +AACGTCACATAGATGA-1_2_151561616_T_C_+ AACGTCACATAGATGA-1 2 151561616 T C + 1 1 T>C T>C +AACCAACAGAGGACTC-1_10_83722963_A_G_+ AACCAACAGAGGACTC-1 10 83722963 A G + 1 1 A>G A>G +AACCCAATCCCTCATG-1_8_23774957_G_A_+ AACCCAATCCCTCATG-1 8 23774957 G A + 1 1 G>A G>A +AAACGAACAGCTTCGG-1_8_64739906_G_A_- AAACGAACAGCTTCGG-1 8 64739906 G A - 1 1 G>A C>T +AACGTCAGTCCCTGAG-1_13_23692482_A_T_+ AACGTCAGTCCCTGAG-1 13 23692482 A T + 1 1 A>T A>T +AAACGAAAGTCGCGAA-1_17_39848018_C_T_+ AAACGAAAGTCGCGAA-1 17 39848018 C T + 1 1 C>T C>T +AACAGGGCAAACTCGT-1_X_136837291_A_G_+ AACAGGGCAAACTCGT-1 X 136837291 A G + 1 1 A>G A>G +AACTTCTAGCTGTGCC-1_17_24529302_G_A_- AACTTCTAGCTGTGCC-1 17 24529302 G A - 1 1 G>A C>T +AACGAAACACACCTGG-1_17_39847331_A_G_+ AACGAAACACACCTGG-1 17 39847331 A G + 1 1 A>G A>G +AACCTGATCGCTCATC-1_17_39848018_C_T_+ AACCTGATCGCTCATC-1 17 39848018 C T + 1 1 C>T C>T +AACAACCGTCTCAGAT-1_3_136935366_A_T_+ AACAACCGTCTCAGAT-1 3 136935366 A T + 1 1 A>T A>T +AACCACACAATCTGCA-1_9_3000533_A_G_- AACCACACAATCTGCA-1 9 3000533 A G - 1 1 A>G T>C +AACGGGACAGTTGTTG-1_2_174336879_G_T_+ AACGGGACAGTTGTTG-1 2 174336879 G T + 1 1 G>T G>T +AAGAACAAGAAGGGAT-1_5_146261113_T_C_+ AAGAACAAGAAGGGAT-1 5 146261113 T C + 1 1 T>C T>C +AACCTGAAGTCCCAGC-1_6_29200652_C_A_- AACCTGAAGTCCCAGC-1 6 29200652 C A - 1 1 C>A G>T +AAAGGTACAAATACAG-1_7_16961169_T_A_+ AAAGGTACAAATACAG-1 7 16961169 T A + 1 1 T>A T>A +AACAAGAAGGTCGTAG-1_17_39847403_T_G_- AACAAGAAGGTCGTAG-1 17 39847403 T G - 1 1 T>G A>C +AAACCCACAGCAGTCC-1_6_30213149_G_A_- AAACCCACAGCAGTCC-1 6 30213149 G A - 1 1 G>A C>T +AAAGGTAGTATGCTAC-1_15_44686922_T_C_- AAAGGTAGTATGCTAC-1 15 44686922 T C - 1 1 T>C A>G +AACGTCATCTGGCTGG-1_6_86675427_G_A_- AACGTCATCTGGCTGG-1 6 86675427 G A - 1 1 G>A C>T +AACTTCTCACTAACGT-1_4_126706126_G_A_+ AACTTCTCACTAACGT-1 4 126706126 G A + 1 1 G>A G>A +AAGATAGGTCATCAGT-1_16_94665957_G_A_+ AAGATAGGTCATCAGT-1 16 94665957 G A + 1 1 G>A G>A +AACCTGAGTCGATTAC-1_15_98538847_A_C_- AACCTGAGTCGATTAC-1 15 98538847 A C - 1 1 A>C T>G +AAGAACAGTAAGATAC-1_3_126810196_A_G_+ AAGAACAGTAAGATAC-1 3 126810196 A G + 1 1 A>G A>G +AAAGAACAGTCGCGAA-1_7_4715817_A_C_+ AAAGAACAGTCGCGAA-1 7 4715817 A C + 1 1 A>C A>C +AAGACTCGTGGTACAG-1_5_147111173_C_T_+ AAGACTCGTGGTACAG-1 5 147111173 C T + 1 1 C>T C>T +AACGGGAGTTGTGCCG-1_16_38347026_G_A_+ AACGGGAGTTGTGCCG-1 16 38347026 G A + 1 1 G>A G>A +AAAGAACCAAATTAGG-1_9_89927147_C_T_+ AAAGAACCAAATTAGG-1 9 89927147 C T + 1 1 C>T C>T +AACCAACGTTTCGTGA-1_1_97660594_A_G_- AACCAACGTTTCGTGA-1 1 97660594 A G - 1 1 A>G T>C +AAACGAAAGGTAGTCG-1_7_68226811_T_C_+ AAACGAAAGGTAGTCG-1 7 68226811 T C + 1 1 T>C T>C +AAAGGGCTCTCACTCG-1_10_100070541_G_A_+ AAAGGGCTCTCACTCG-1 10 100070541 G A + 1 1 G>A G>A +AACAACCGTCATCGGC-1_14_122889605_T_C_+ AACAACCGTCATCGGC-1 14 122889605 T C + 1 1 T>C T>C +AAAGGGCTCTTCCAGC-1_MT_7447_A_G_+ AAAGGGCTCTTCCAGC-1 MT 7447 A G + 1 2 A>G A>G +AAACGAAAGACAACAT-1_2_5379332_A_T_- AAACGAAAGACAACAT-1 2 5379332 A T - 1 1 A>T T>A +AAGACAAGTACTGACT-1_9_99495668_C_T_- AAGACAAGTACTGACT-1 9 99495668 C T - 1 1 C>T G>A +AAACGCTGTCAACACT-1_6_97807604_G_T_+ AAACGCTGTCAACACT-1 6 97807604 G T + 1 1 G>T G>T +AAGAACAGTCGGCTAC-1_5_146261076_T_C_+ AAGAACAGTCGGCTAC-1 5 146261076 T C + 1 1 T>C T>C +AACAGGGTCGGTCGGT-1_14_60963961_G_T_- AACAGGGTCGGTCGGT-1 14 60963961 G T - 1 1 G>T C>A +AAACCCAGTATGTCCA-1_16_57391680_C_T_- AAACCCAGTATGTCCA-1 16 57391680 C T - 1 1 C>T G>A +AACGTCACACTCCTTG-1_11_106066798_A_G_+ AACGTCACACTCCTTG-1 11 106066798 A G + 1 1 A>G A>G +AAAGGATGTACTCGAT-1_16_57391454_T_C_- AAAGGATGTACTCGAT-1 16 57391454 T C - 1 1 T>C A>G +AACCACATCGGAGATG-1_3_141614232_C_A_+ AACCACATCGGAGATG-1 3 141614232 C A + 1 1 C>A C>A +AAGAACACATACTGTG-1_8_71369260_C_T_+ AAGAACACATACTGTG-1 8 71369260 C T + 1 1 C>T C>T +AACTTCTAGTGATGGC-1_6_149420598_A_C_+ AACTTCTAGTGATGGC-1 6 149420598 A C + 1 1 A>C A>C +AACTTCTAGGGATCTG-1_3_130059637_C_A_- AACTTCTAGGGATCTG-1 3 130059637 C A - 1 1 C>A G>T +AACCATGTCCGTGCGA-1_17_39848018_C_T_+ AACCATGTCCGTGCGA-1 17 39848018 C T + 1 1 C>T C>T +AACGTCACATAGATGA-1_2_42608195_G_C_- AACGTCACATAGATGA-1 2 42608195 G C - 1 1 G>C C>G +AACCATGAGTTCCGTA-1_12_100209575_C_T_+ AACCATGAGTTCCGTA-1 12 100209575 C T + 1 1 C>T C>T +AACAAAGCACGGCACT-1_X_136838026_A_T_+ AACAAAGCACGGCACT-1 X 136838026 A T + 1 1 A>T A>T +AAAGTCCCACAAATGA-1_15_77993648_G_T_- AAAGTCCCACAAATGA-1 15 77993648 G T - 1 1 G>T C>A +AAGATAGAGCATGAAT-1_8_94180217_C_T_+ AAGATAGAGCATGAAT-1 8 94180217 C T + 1 1 C>T C>T +AAGAACAGTTGCTCCT-1_11_50137326_C_A_+ AAGAACAGTTGCTCCT-1 11 50137326 C A + 1 1 C>A C>A +AAGATAGGTCATCAGT-1_3_136936850_G_A_+ AAGATAGGTCATCAGT-1 3 136936850 G A + 1 1 G>A G>A +AAAGGATGTACAACGG-1_18_5119022_C_T_+ AAAGGATGTACAACGG-1 18 5119022 C T + 1 1 C>T C>T +AAGACTCGTTGCTCGG-1_15_100115855_A_G_+ AAGACTCGTTGCTCGG-1 15 100115855 A G + 1 1 A>G A>G +AAGACTCGTGGTACAG-1_17_66494813_G_A_- AAGACTCGTGGTACAG-1 17 66494813 G A - 1 1 G>A C>T +AAACCCATCGGATAAA-1_11_69998619_C_T_+ AAACCCATCGGATAAA-1 11 69998619 C T + 1 1 C>T C>T +AAACCCAAGGTAGACC-1_2_174346631_C_T_+ AAACCCAAGGTAGACC-1 2 174346631 C T + 1 1 C>T C>T +AAGACTCTCGAGTACT-1_19_6340700_C_T_+ AAGACTCTCGAGTACT-1 19 6340700 C T + 1 1 C>T C>T +AAGACTCGTGGTACAG-1_14_73366342_G_A_- AAGACTCGTGGTACAG-1 14 73366342 G A - 1 1 G>A C>T +AACCAACAGGACACTG-1_17_39848018_C_T_+ AACCAACAGGACACTG-1 17 39848018 C T + 1 1 C>T C>T +AACAACCCAGGAACCA-1_4_108852098_G_A_+ AACAACCCAGGAACCA-1 4 108852098 G A + 1 1 G>A G>A +AACCACAAGTGGACTG-1_17_39848018_C_T_+ AACCACAAGTGGACTG-1 17 39848018 C T + 1 1 C>T C>T +AACCCAATCCTCTAGC-1_19_5802658_C_G_- AACCCAATCCTCTAGC-1 19 5802658 C G - 1 2 C>G G>C +AACACACAGGATCACG-1_11_69994814_A_T_+ AACACACAGGATCACG-1 11 69994814 A T + 1 1 A>T A>T +AAAGGATTCCTGTACC-1_12_99645608_T_C_+ AAAGGATTCCTGTACC-1 12 99645608 T C + 1 1 T>C T>C +AACGTCATCTATACGG-1_8_95714692_C_T_+ AACGTCATCTATACGG-1 8 95714692 C T + 1 1 C>T C>T +AAAGTGATCCAACTGA-1_6_83480273_A_T_- AAAGTGATCCAACTGA-1 6 83480273 A T - 1 1 A>T T>A +AAACCCAGTGGTAATA-1_7_19696466_G_A_- AAACCCAGTGGTAATA-1 7 19696466 G A - 1 3 G>A C>T +AAGACAAGTCGAATTC-1_X_162413972_G_A_- AAGACAAGTCGAATTC-1 X 162413972 G A - 1 1 G>A C>T +AACAAAGGTACTGCGC-1_17_39848018_C_T_+ AACAAAGGTACTGCGC-1 17 39848018 C T + 1 1 C>T C>T +AAAGGTAGTATGTGTC-1_X_136838183_G_A_+ AAAGGTAGTATGTGTC-1 X 136838183 G A + 1 8 G>A G>A +AAGACAAGTCGAATTC-1_11_101091252_T_C_+ AAGACAAGTCGAATTC-1 11 101091252 T C + 1 1 T>C T>C +AAACGAAGTGTTTACG-1_3_152463031_G_A_- AAACGAAGTGTTTACG-1 3 152463031 G A - 1 1 G>A C>T +AAACCCACAGCTGTGC-1_4_149648642_C_T_+ AAACCCACAGCTGTGC-1 4 149648642 C T + 1 1 C>T C>T +AACGGGACATATGCGT-1_1_36692548_T_C_+ AACGGGACATATGCGT-1 1 36692548 T C + 1 1 T>C T>C +AACGGGAAGTTACTCG-1_4_130705825_A_G_+ AACGGGAAGTTACTCG-1 4 130705825 A G + 1 1 A>G A>G +AACAAGAAGTGATGGC-1_2_158386128_A_G_+ AACAAGAAGTGATGGC-1 2 158386128 A G + 1 1 A>G A>G +AACCTGACATCGTCCT-1_2_121458326_G_T_+ AACCTGACATCGTCCT-1 2 121458326 G T + 1 1 G>T G>T +AACCACAAGCTTTGTG-1_1_57961299_T_G_- AACCACAAGCTTTGTG-1 1 57961299 T G - 1 1 T>G A>C +AAAGTCCAGTCGGCCT-1_3_95219217_G_A_- AAAGTCCAGTCGGCCT-1 3 95219217 G A - 1 1 G>A C>T +AAGACAAAGGGCAAGG-1_5_25272662_T_C_- AAGACAAAGGGCAAGG-1 5 25272662 T C - 1 1 T>C A>G +AACTTCTTCGACCACG-1_13_44869614_A_G_+ AACTTCTTCGACCACG-1 13 44869614 A G + 1 1 A>G A>G +AACTTCTTCTAGGAAA-1_10_69885191_C_G_+ AACTTCTTCTAGGAAA-1 10 69885191 C G + 1 1 C>G C>G +AACAACCCAGACGGAT-1_2_103779506_C_A_- AACAACCCAGACGGAT-1 2 103779506 C A - 1 1 C>A G>T +AACAGGGGTGTTTACG-1_17_39847139_T_A_+ AACAGGGGTGTTTACG-1 17 39847139 T A + 1 1 T>A T>A +AAACGAAAGGCTTTCA-1_17_46891679_T_C_+ AAACGAAAGGCTTTCA-1 17 46891679 T C + 1 1 T>C T>C +AACCTGAGTCGATTAC-1_2_49774666_C_T_+ AACCTGAGTCGATTAC-1 2 49774666 C T + 1 1 C>T C>T +AACGTCAAGAACTCCT-1_2_98667239_A_C_- AACGTCAAGAACTCCT-1 2 98667239 A C - 1 1 A>C T>G +AACAACCCACACACGC-1_19_5802109_G_A_- AACAACCCACACACGC-1 19 5802109 G A - 1 1 G>A C>T +AACGGGAAGTTACTCG-1_12_11325677_G_A_- AACGGGAAGTTACTCG-1 12 11325677 G A - 1 1 G>A C>T +AAATGGAAGTGAATAC-1_14_76099092_T_A_- AAATGGAAGTGAATAC-1 14 76099092 T A - 1 1 T>A A>T +AACGAAAAGAACAAGG-1_7_103826696_A_C_- AACGAAAAGAACAAGG-1 7 103826696 A C - 1 24 A>C T>G +AACCAACCAGTCTTCC-1_9_3028839_T_G_- AACCAACCAGTCTTCC-1 9 3028839 T G - 1 1 T>G A>C +AACAAGAAGTAAACTG-1_2_125674653_C_T_+ AACAAGAAGTAAACTG-1 2 125674653 C T + 1 1 C>T C>T +AAATGGAAGCAGATAT-1_4_117948579_A_G_- AAATGGAAGCAGATAT-1 4 117948579 A G - 1 1 A>G T>C +AAGATAGGTCATCAGT-1_16_94665960_G_A_+ AAGATAGGTCATCAGT-1 16 94665960 G A + 1 1 G>A G>A +AACACACGTGTTGCCG-1_5_146261076_T_C_+ AACACACGTGTTGCCG-1 5 146261076 T C + 1 1 T>C T>C +AACAAAGTCATTTCCA-1_17_39847403_T_G_- AACAAAGTCATTTCCA-1 17 39847403 T G - 1 1 T>G A>C +AAAGAACGTACGGATG-1_9_123461940_T_G_+ AAAGAACGTACGGATG-1 9 123461940 T G + 1 1 T>G T>G +AACAACCAGACGACTG-1_17_39847602_T_A_+ AACAACCAGACGACTG-1 17 39847602 T A + 1 1 T>A T>A +AAAGAACCAAATTAGG-1_10_128090146_A_C_+ AAAGAACCAAATTAGG-1 10 128090146 A C + 1 1 A>C A>C +AACGGGAGTTGTGCCG-1_19_38306533_C_T_+ AACGGGAGTTGTGCCG-1 19 38306533 C T + 1 1 C>T C>T +AAATGGAAGCAGATAT-1_4_117948550_A_T_- AAATGGAAGCAGATAT-1 4 117948550 A T - 1 1 A>T T>A +AAACGCTTCCATAGAC-1_4_134473478_T_C_+ AAACGCTTCCATAGAC-1 4 134473478 T C + 1 1 T>C T>C +AAGAACATCTCCGAAA-1_2_127633357_G_A_- AAGAACATCTCCGAAA-1 2 127633357 G A - 1 1 G>A C>T +AAACCCATCCTACTGC-1_5_92965058_A_G_+ AAACCCATCCTACTGC-1 5 92965058 A G + 1 1 A>G A>G +AAAGTCCTCCGATGCG-1_9_46131553_T_A_+ AAAGTCCTCCGATGCG-1 9 46131553 T A + 1 1 T>A T>A +AAAGTGAGTAGGTACG-1_9_57122017_G_T_+ AAAGTGAGTAGGTACG-1 9 57122017 G T + 1 1 G>T G>T +AACAACCAGTTACTCG-1_14_76507700_C_T_+ AACAACCAGTTACTCG-1 14 76507700 C T + 1 1 C>T C>T +AAACGAAGTACAGTTC-1_14_79647508_G_A_- AAACGAAGTACAGTTC-1 14 79647508 G A - 1 1 G>A C>T +AAACGCTAGTGTTGAA-1_17_50628848_C_T_+ AAACGCTAGTGTTGAA-1 17 50628848 C T + 1 1 C>T C>T +AAACCCAGTGGTAATA-1_2_143990254_G_T_- AAACCCAGTGGTAATA-1 2 143990254 G T - 1 1 G>T C>A +AAGATAGCACGCGTGT-1_12_117626570_G_A_+ AAGATAGCACGCGTGT-1 12 117626570 G A + 1 1 G>A G>A +AACAACCAGGGAACAA-1_17_39847403_T_G_- AACAACCAGGGAACAA-1 17 39847403 T G - 1 1 T>G A>C +AACCACAAGACTTGTC-1_17_24721187_C_A_+ AACCACAAGACTTGTC-1 17 24721187 C A + 1 1 C>A C>A +AACAGGGGTGCACATT-1_6_97211259_A_G_+ AACAGGGGTGCACATT-1 6 97211259 A G + 1 1 A>G A>G +AACAACCAGTAATACG-1_9_111312141_A_C_+ AACAACCAGTAATACG-1 9 111312141 A C + 1 1 A>C A>C +AAACCCAGTGGTAATA-1_17_39847536_T_A_- AAACCCAGTGGTAATA-1 17 39847536 T A - 1 1 T>A A>T +AACAAAGCACGGCACT-1_5_100361958_G_T_- AACAAAGCACGGCACT-1 5 100361958 G T - 1 1 G>T C>A +AAACGAAGTGTTTACG-1_16_57391680_C_T_- AAACGAAGTGTTTACG-1 16 57391680 C T - 1 1 C>T G>A +AAACCCAGTTGGACCC-1_8_48645511_T_C_- AAACCCAGTTGGACCC-1 8 48645511 T C - 1 1 T>C A>G +AAGATAGCATGGGAAC-1_16_57391679_G_T_- AAGATAGCATGGGAAC-1 16 57391679 G T - 1 1 G>T C>A +AACCAACTCGATGGAG-1_15_72852081_C_T_- AACCAACTCGATGGAG-1 15 72852081 C T - 1 1 C>T G>A +AACTTCTCATGAATAG-1_4_13890287_T_C_+ AACTTCTCATGAATAG-1 4 13890287 T C + 1 1 T>C T>C +AACGTCAGTAGAGCTG-1_X_136838046_G_T_+ AACGTCAGTAGAGCTG-1 X 136838046 G T + 1 3 G>T G>T +AAACGAAAGCGAACTG-1_4_123194678_C_T_+ AAACGAAAGCGAACTG-1 4 123194678 C T + 1 1 C>T C>T +AAAGGATCACGTAGTT-1_5_146261080_C_A_+ AAAGGATCACGTAGTT-1 5 146261080 C A + 1 1 C>A C>A +AACCACAAGACTTGTC-1_3_152274020_A_G_- AACCACAAGACTTGTC-1 3 152274020 A G - 1 1 A>G T>C +AAACCCACAATCTCTT-1_11_6556145_C_T_+ AAACCCACAATCTCTT-1 11 6556145 C T + 1 1 C>T C>T +AACAACCCAGACGGAT-1_17_39848018_C_T_+ AACAACCCAGACGGAT-1 17 39848018 C T + 1 1 C>T C>T +AAGAACATCTCCGAAA-1_2_60082443_C_T_- AAGAACATCTCCGAAA-1 2 60082443 C T - 1 1 C>T G>A +AAGATAGGTCATCAGT-1_15_36771749_G_A_- AAGATAGGTCATCAGT-1 15 36771749 G A - 1 1 G>A C>T +AACCACACAATCTGCA-1_9_3000561_T_A_- AACCACACAATCTGCA-1 9 3000561 T A - 1 1 T>A A>T +AACGTCAAGCTAAACA-1_2_3214650_T_G_+ AACGTCAAGCTAAACA-1 2 3214650 T G + 1 1 T>G T>G +AACAGGGGTGCACATT-1_8_17124788_C_T_- AACAGGGGTGCACATT-1 8 17124788 C T - 1 1 C>T G>A +AAAGTCCAGTCGGCCT-1_5_33027729_C_T_+ AAAGTCCAGTCGGCCT-1 5 33027729 C T + 1 1 C>T C>T +AAGACTCGTCCACATA-1_16_57391688_T_G_- AAGACTCGTCCACATA-1 16 57391688 T G - 1 1 T>G A>C +AAGAACATCTCCGAAA-1_6_54879137_T_C_+ AAGAACATCTCCGAAA-1 6 54879137 T C + 1 1 T>C T>C +AAATGGACACCATATG-1_2_98666818_T_C_- AAATGGACACCATATG-1 2 98666818 T C - 1 1 T>C A>G +AAGATAGGTCATCAGT-1_15_25363383_C_G_- AAGATAGGTCATCAGT-1 15 25363383 C G - 1 1 C>G G>C +AAGATAGGTCATCAGT-1_2_165784276_G_T_- AAGATAGGTCATCAGT-1 2 165784276 G T - 1 1 G>T C>A +AAGACAAGTCGAATTC-1_X_136066663_G_A_- AAGACAAGTCGAATTC-1 X 136066663 G A - 1 1 G>A C>T +AAAGAACAGTCAAGCG-1_17_39847458_A_G_+ AAAGAACAGTCAAGCG-1 17 39847458 A G + 1 1 A>G A>G +AAAGGGCCAGCGCTTG-1_4_41191273_C_A_+ AAAGGGCCAGCGCTTG-1 4 41191273 C A + 1 1 C>A C>A +AACCAACTCGGAAGGT-1_6_86878662_G_T_+ AACCAACTCGGAAGGT-1 6 86878662 G T + 1 1 G>T G>T +AACCACATCCTAGCTC-1_5_131096289_T_C_- AACCACATCCTAGCTC-1 5 131096289 T C - 1 1 T>C A>G +AACCTGACATCGTCCT-1_10_80406710_T_G_- AACCTGACATCGTCCT-1 10 80406710 T G - 1 1 T>G A>C +AACCAACGTTTCGTGA-1_X_136838175_A_G_+ AACCAACGTTTCGTGA-1 X 136838175 A G + 1 6 A>G A>G +AAAGGATAGGTTCCAT-1_7_97688576_C_T_+ AAAGGATAGGTTCCAT-1 7 97688576 C T + 1 1 C>T C>T +AAAGGATGTGCTCGTG-1_9_56223610_T_C_- AAAGGATGTGCTCGTG-1 9 56223610 T C - 1 1 T>C A>G +AACGAAAGTGCGGTAA-1_11_113124905_T_C_- AACGAAAGTGCGGTAA-1 11 113124905 T C - 1 1 T>C A>G +AACCACAGTGTTCCTC-1_19_21392341_G_A_- AACCACAGTGTTCCTC-1 19 21392341 G A - 1 1 G>A C>T +AAAGGGCTCTGCTAGA-1_8_125544560_A_G_- AAAGGGCTCTGCTAGA-1 8 125544560 A G - 1 1 A>G T>C +AAAGTGATCTCGGCTT-1_11_120610331_A_G_- AAAGTGATCTCGGCTT-1 11 120610331 A G - 1 1 A>G T>C +AAAGGGCTCTCACTCG-1_17_25958396_G_A_- AAAGGGCTCTCACTCG-1 17 25958396 G A - 1 1 G>A C>T +AACAAAGAGCCATTTG-1_11_121260055_G_A_+ AACAAAGAGCCATTTG-1 11 121260055 G A + 1 1 G>A G>A +AAACCCACATATCTGG-1_11_69343395_G_A_- AAACCCACATATCTGG-1 11 69343395 G A - 1 1 G>A C>T +AACCAACTCATATGGC-1_3_30793328_A_G_+ AACCAACTCATATGGC-1 3 30793328 A G + 1 1 A>G A>G +AAGATAGAGGTTGAGC-1_1_55213549_T_C_- AAGATAGAGGTTGAGC-1 1 55213549 T C - 1 1 T>C A>G +AAAGTCCAGTCGGCCT-1_15_98518963_G_A_- AAAGTCCAGTCGGCCT-1 15 98518963 G A - 1 1 G>A C>T +AAGAACAAGTCTCTGA-1_7_28352381_C_T_+ AAGAACAAGTCTCTGA-1 7 28352381 C T + 1 1 C>T C>T +AAAGGATGTACCATAC-1_14_19417308_C_T_- AAAGGATGTACCATAC-1 14 19417308 C T - 1 1 C>T G>A +AAGATAGAGGTTGAGC-1_5_36795060_G_T_- AAGATAGAGGTTGAGC-1 5 36795060 G T - 1 1 G>T C>A +AAACCCAGTATGTCCA-1_16_57391683_T_A_- AAACCCAGTATGTCCA-1 16 57391683 T A - 1 1 T>A A>T +AAAGGTAAGACTTCAC-1_7_28759050_G_T_- AAAGGTAAGACTTCAC-1 7 28759050 G T - 1 1 G>T C>A +AAGAACAGTAGGACTG-1_7_4134005_T_A_+ AAGAACAGTAGGACTG-1 7 4134005 T A + 1 1 T>A T>A +AACCTTTCAGACCTGC-1_2_77932700_T_C_- AACCTTTCAGACCTGC-1 2 77932700 T C - 1 1 T>C A>G +AACCATGGTCATACCA-1_10_81151700_G_A_+ AACCATGGTCATACCA-1 10 81151700 G A + 1 1 G>A G>A +AAGACTCGTTGCTCGG-1_17_81470242_T_A_- AAGACTCGTTGCTCGG-1 17 81470242 T A - 1 1 T>A A>T +AACCTTTCAGCACAGA-1_X_136837501_C_T_+ AACCTTTCAGCACAGA-1 X 136837501 C T + 1 1 C>T C>T +AAACGCTCAGTAGGAC-1_8_94067842_C_T_+ AAACGCTCAGTAGGAC-1 8 94067842 C T + 1 1 C>T C>T +AACACACTCGAATGCT-1_17_39848018_C_T_+ AACACACTCGAATGCT-1 17 39848018 C T + 1 1 C>T C>T +AACCAACCAATAGGGC-1_9_3000379_T_G_- AACCAACCAATAGGGC-1 9 3000379 T G - 1 1 T>G A>C +AACAGGGGTGCACATT-1_17_39848100_A_T_+ AACAGGGGTGCACATT-1 17 39848100 A T + 1 1 A>T A>T +AACACACAGTGCACAG-1_9_107614336_A_C_- AACACACAGTGCACAG-1 9 107614336 A C - 1 1 A>C T>G +AACTTCTCACTAACGT-1_19_5802060_G_C_- AACTTCTCACTAACGT-1 19 5802060 G C - 1 2 G>C C>G +AACCTTTAGGGTATAT-1_5_49307899_A_C_- AACCTTTAGGGTATAT-1 5 49307899 A C - 1 1 A>C T>G +AAGACTCTCGAGTACT-1_6_120795359_G_A_- AAGACTCTCGAGTACT-1 6 120795359 G A - 1 1 G>A C>T +AACAAAGGTTTGACAC-1_12_99645645_A_G_+ AACAAAGGTTTGACAC-1 12 99645645 A G + 1 1 A>G A>G +AACCCAAGTATCGATC-1_MT_7502_G_A_+ AACCCAAGTATCGATC-1 MT 7502 G A + 1 3 G>A G>A +AACCACAAGACTTGTC-1_17_24721232_C_G_+ AACCACAAGACTTGTC-1 17 24721232 C G + 1 1 C>G C>G +AAACGAAGTTCATCTT-1_6_148141278_G_T_+ AAACGAAGTTCATCTT-1 6 148141278 G T + 1 1 G>T G>T +AACGGGAGTCAGGCAA-1_1_182131664_C_T_+ AACGGGAGTCAGGCAA-1 1 182131664 C T + 1 1 C>T C>T +AAACGCTCATCAACCA-1_4_3584659_A_G_+ AAACGCTCATCAACCA-1 4 3584659 A G + 1 1 A>G A>G +AACAACCCACACACGC-1_X_136838170_C_T_+ AACAACCCACACACGC-1 X 136838170 C T + 1 2 C>T C>T +AAAGGATCAGCTGTAT-1_17_39847458_A_G_+ AAAGGATCAGCTGTAT-1 17 39847458 A G + 1 1 A>G A>G +AAGAACAGTTGGAGGT-1_5_84417004_C_G_- AAGAACAGTTGGAGGT-1 5 84417004 C G - 1 1 C>G G>C +AACGTCATCTGGCTGG-1_7_126795454_T_A_- AACGTCATCTGGCTGG-1 7 126795454 T A - 1 1 T>A A>T +AAATGGAGTACCGGAA-1_MT_3374_A_G_+ AAATGGAGTACCGGAA-1 MT 3374 A G + 1 1 A>G A>G +AAGAACAGTCGTTGCG-1_11_85465679_C_A_+ AAGAACAGTCGTTGCG-1 11 85465679 C A + 1 1 C>A C>A +AAGAACAGTGCGTTTA-1_2_98662886_T_C_+ AAGAACAGTGCGTTTA-1 2 98662886 T C + 1 1 T>C T>C +AACACACCAGACCAGA-1_6_117924985_G_A_+ AACACACCAGACCAGA-1 6 117924985 G A + 1 1 G>A G>A +AAAGGATGTGCTCGTG-1_14_101633032_G_A_- AAAGGATGTGCTCGTG-1 14 101633032 G A - 1 1 G>A C>T +AAAGGTAGTATGCTAC-1_2_31026414_A_G_- AAAGGTAGTATGCTAC-1 2 31026414 A G - 1 1 A>G T>C +AAATGGACAAGCGCAA-1_13_68865430_C_T_- AAATGGACAAGCGCAA-1 13 68865430 C T - 1 1 C>T G>A +AAGAACAGTTCGGTTA-1_1_80522121_C_A_- AAGAACAGTTCGGTTA-1 1 80522121 C A - 1 1 C>A G>T +AACACACAGTGCACAG-1_4_103689257_A_C_+ AACACACAGTGCACAG-1 4 103689257 A C + 1 1 A>C A>C +AACAAGAGTCGTGATT-1_15_81954338_G_A_- AACAAGAGTCGTGATT-1 15 81954338 G A - 1 1 G>A C>T +AAGACAAAGGCCCACT-1_16_57391677_C_G_- AAGACAAAGGCCCACT-1 16 57391677 C G - 1 1 C>G G>C +AAAGGTAGTCGAATTC-1_1_127279884_T_A_+ AAAGGTAGTCGAATTC-1 1 127279884 T A + 1 1 T>A T>A +AAGACTCGTGCGGTAA-1_17_39847403_T_G_+ AAGACTCGTGCGGTAA-1 17 39847403 T G + 1 1 T>G T>G +AACAAGATCTATTTCG-1_5_146261004_G_C_+ AACAAGATCTATTTCG-1 5 146261004 G C + 1 1 G>C G>C +AAACGCTCAGTAGGAC-1_9_78478698_G_A_- AAACGCTCAGTAGGAC-1 9 78478698 G A - 1 1 G>A C>T +AACCTTTTCCTAGCGG-1_16_98010780_G_A_+ AACCTTTTCCTAGCGG-1 16 98010780 G A + 1 1 G>A G>A +AACCAACTCGATGGAG-1_11_93902339_T_G_+ AACCAACTCGATGGAG-1 11 93902339 T G + 1 1 T>G T>G +AACTTCTCATGAATAG-1_9_3004703_T_A_- AACTTCTCATGAATAG-1 9 3004703 T A - 1 1 T>A A>T +AACCACAAGGACAGCT-1_17_39848018_C_T_+ AACCACAAGGACAGCT-1 17 39848018 C T + 1 1 C>T C>T +AAACGCTCACCTAAAC-1_12_84140846_A_G_+ AAACGCTCACCTAAAC-1 12 84140846 A G + 1 1 A>G A>G +AAGACAAGTCGAATTC-1_14_79430825_C_T_+ AAGACAAGTCGAATTC-1 14 79430825 C T + 1 1 C>T C>T +AAACCCAGTAGGACTG-1_12_44312093_G_A_+ AAACCCAGTAGGACTG-1 12 44312093 G A + 1 1 G>A G>A +AAATGGAAGCAGATAT-1_4_117948565_T_C_- AAATGGAAGCAGATAT-1 4 117948565 T C - 1 1 T>C A>G +AACAAAGAGGTGCGAT-1_5_112419340_C_A_- AACAAAGAGGTGCGAT-1 5 112419340 C A - 1 1 C>A G>T +AACCAACAGTATCTGC-1_19_5802660_G_A_- AACCAACAGTATCTGC-1 19 5802660 G A - 1 1 G>A C>T +AACACACCAGACCAGA-1_X_167207305_G_T_- AACACACCAGACCAGA-1 X 167207305 G T - 1 1 G>T C>A +AACCTTTCAGACCTGC-1_13_20606274_T_A_+ AACCTTTCAGACCTGC-1 13 20606274 T A + 1 1 T>A T>A +AAGACAAAGCTGACAG-1_9_3017952_G_A_+ AAGACAAAGCTGACAG-1 9 3017952 G A + 1 1 G>A G>A +AAAGAACCAGCTTCGG-1_2_39004755_G_T_- AAAGAACCAGCTTCGG-1 2 39004755 G T - 1 1 G>T C>A +AACCTTTAGGAGAGTA-1_7_25664408_C_A_+ AACCTTTAGGAGAGTA-1 7 25664408 C A + 1 1 C>A C>A +AACACACCATCGTCCT-1_5_100038865_C_T_- AACACACCATCGTCCT-1 5 100038865 C T - 1 1 C>T G>A +AAACCCATCAAGCCAT-1_2_102786764_T_C_+ AAACCCATCAAGCCAT-1 2 102786764 T C + 1 1 T>C T>C +AAGAACATCCTGGTCT-1_19_47025263_C_T_+ AAGAACATCCTGGTCT-1 19 47025263 C T + 1 1 C>T C>T +AAAGGGCCAGCGCTTG-1_5_49423795_C_T_- AAAGGGCCAGCGCTTG-1 5 49423795 C T - 1 1 C>T G>A +AAAGTCCAGTGGGAAA-1_14_101634343_C_T_- AAAGTCCAGTGGGAAA-1 14 101634343 C T - 1 1 C>T G>A +AAAGGGCCACACTTAG-1_9_40785052_T_C_+ AAAGGGCCACACTTAG-1 9 40785052 T C + 1 1 T>C T>C +AACCTTTTCGCTCCTA-1_17_39847276_T_A_+ AACCTTTTCGCTCCTA-1 17 39847276 T A + 1 1 T>A T>A +AAAGTCCAGGAGAGTA-1_2_5379370_T_G_- AAAGTCCAGGAGAGTA-1 2 5379370 T G - 1 1 T>G A>C +AAAGGTAGTCGAATTC-1_4_52467911_A_C_+ AAAGGTAGTCGAATTC-1 4 52467911 A C + 1 1 A>C A>C +AAGACAAAGCGCCTTG-1_3_122925527_C_T_+ AAGACAAAGCGCCTTG-1 3 122925527 C T + 1 1 C>T C>T +AACCAACGTGCCTAAT-1_5_121349477_C_A_+ AACCAACGTGCCTAAT-1 5 121349477 C A + 1 1 C>A C>A +AACGGGAAGCATACTC-1_5_146261076_T_C_+ AACGGGAAGCATACTC-1 5 146261076 T C + 1 1 T>C T>C +AACCACAGTGTTCCTC-1_9_67022647_G_A_- AACCACAGTGTTCCTC-1 9 67022647 G A - 1 1 G>A C>T +AACCACAAGTGATAGT-1_X_56507674_C_T_+ AACCACAAGTGATAGT-1 X 56507674 C T + 1 1 C>T C>T +AAAGTCCGTGAGTAAT-1_17_3163126_G_T_+ AAAGTCCGTGAGTAAT-1 17 3163126 G T + 1 1 G>T G>T +AAAGTGACACCAGCTG-1_2_174346655_C_T_+ AAAGTGACACCAGCTG-1 2 174346655 C T + 1 1 C>T C>T +AACCAACTCAGTGGGA-1_8_83996440_T_A_+ AACCAACTCAGTGGGA-1 8 83996440 T A + 1 1 T>A T>A +AAATGGAGTACCGGAA-1_MT_6653_C_G_+ AAATGGAGTACCGGAA-1 MT 6653 C G + 1 1 C>G C>G +AAACGCTGTTTGACAC-1_9_3024634_G_C_- AAACGCTGTTTGACAC-1 9 3024634 G C - 1 1 G>C C>G +AACGAAAGTCAACCAT-1_17_39848018_C_T_+ AACGAAAGTCAACCAT-1 17 39848018 C T + 1 1 C>T C>T +AAATGGACACATACTG-1_17_87433619_G_A_- AAATGGACACATACTG-1 17 87433619 G A - 1 1 G>A C>T +AACGGGAAGCAGCCCT-1_15_89552205_C_T_+ AACGGGAAGCAGCCCT-1 15 89552205 C T + 1 1 C>T C>T +AAACCCACAGCAGTCC-1_2_117163519_A_T_+ AAACCCACAGCAGTCC-1 2 117163519 A T + 1 1 A>T A>T +AAAGGGCCACACTTAG-1_9_57023882_C_A_+ AAAGGGCCACACTTAG-1 9 57023882 C A + 1 1 C>A C>A +AAAGGTATCGCGTGAC-1_9_120574300_G_A_+ AAAGGTATCGCGTGAC-1 9 120574300 G A + 1 1 G>A G>A +AACCCAAGTATCGATC-1_6_149059972_T_A_- AACCCAAGTATCGATC-1 6 149059972 T A - 1 1 T>A A>T +AAACCCAAGTAAAGCT-1_2_158385947_A_C_+ AAACCCAAGTAAAGCT-1 2 158385947 A C + 1 1 A>C A>C +AAAGAACTCTGTCCCA-1_9_3000506_C_A_- AAAGAACTCTGTCCCA-1 9 3000506 C A - 1 1 C>A G>T +AACACACCAGACCAGA-1_9_34553079_G_C_+ AACACACCAGACCAGA-1 9 34553079 G C + 1 1 G>C G>C +AACGGGATCTACCTTA-1_17_39847607_T_G_+ AACGGGATCTACCTTA-1 17 39847607 T G + 1 1 T>G T>G +AAGATAGCACGCGTGT-1_6_49256483_G_A_- AAGATAGCACGCGTGT-1 6 49256483 G A - 1 1 G>A C>T +AAAGTCCCACCACATA-1_10_110454984_G_A_- AAAGTCCCACCACATA-1 10 110454984 G A - 1 1 G>A C>T +AAGATAGAGGCCACTC-1_11_32297162_A_G_+ AAGATAGAGGCCACTC-1 11 32297162 A G + 1 10 A>G A>G +AAGATAGAGATGGTAT-1_5_137528323_T_C_- AAGATAGAGATGGTAT-1 5 137528323 T C - 1 1 T>C A>G +AAAGGGCGTTCCAAAC-1_8_70804980_A_T_- AAAGGGCGTTCCAAAC-1 8 70804980 A T - 1 1 A>T T>A +AAGACAAGTAACAGTA-1_12_84775055_G_A_+ AAGACAAGTAACAGTA-1 12 84775055 G A + 1 1 G>A G>A +AAAGGTATCGATTGAC-1_9_3018043_G_A_- AAAGGTATCGATTGAC-1 9 3018043 G A - 1 1 G>A C>T +AACTTCTAGAGAACCC-1_9_3024503_T_C_- AACTTCTAGAGAACCC-1 9 3024503 T C - 1 1 T>C A>G +AAGACTCTCGAGTACT-1_2_167298734_G_A_- AAGACTCTCGAGTACT-1 2 167298734 G A - 1 1 G>A C>T +AAAGGGCCACACTTAG-1_9_57023917_T_A_+ AAAGGGCCACACTTAG-1 9 57023917 T A + 1 1 T>A T>A +AAATGGAGTACTAAGA-1_MT_4748_G_A_+ AAATGGAGTACTAAGA-1 MT 4748 G A + 1 1 G>A G>A +AAGAACAAGGTCGAGT-1_9_3024473_G_A_- AAGAACAAGGTCGAGT-1 9 3024473 G A - 1 1 G>A C>T +AAGAACAGTTGGAGGT-1_19_5664744_A_G_- AAGAACAGTTGGAGGT-1 19 5664744 A G - 1 1 A>G T>C +AAGATAGGTACGCGTC-1_19_31081986_T_G_- AAGATAGGTACGCGTC-1 19 31081986 T G - 1 1 T>G A>C +AACCACATCAAAGGTA-1_4_48662913_C_T_+ AACCACATCAAAGGTA-1 4 48662913 C T + 1 1 C>T C>T +AAGACTCGTGGTACAG-1_11_29546728_G_A_- AAGACTCGTGGTACAG-1 11 29546728 G A - 1 1 G>A C>T +AAAGGTAAGACTTCAC-1_5_49220154_G_T_- AAAGGTAAGACTTCAC-1 5 49220154 G T - 1 1 G>T C>A +AAGATAGGTCATCAGT-1_13_59453992_G_A_- AAGATAGGTCATCAGT-1 13 59453992 G A - 1 1 G>A C>T +AAACCCAAGATTGCGG-1_10_90973013_C_T_+ AAACCCAAGATTGCGG-1 10 90973013 C T + 1 1 C>T C>T +AACAAAGTCCCGTGTT-1_9_3035184_T_C_- AACAAAGTCCCGTGTT-1 9 3035184 T C - 1 1 T>C A>G +AAACGCTCAGTAGGAC-1_5_146835588_C_A_+ AAACGCTCAGTAGGAC-1 5 146835588 C A + 1 2 C>A C>A +AACCTTTAGGAGAGTA-1_15_80119222_C_T_+ AACCTTTAGGAGAGTA-1 15 80119222 C T + 1 1 C>T C>T +AACCTTTTCCGTGTGG-1_9_3038013_C_T_- AACCTTTTCCGTGTGG-1 9 3038013 C T - 1 1 C>T G>A +AACCTTTCACACCTGG-1_4_138457015_T_A_+ AACCTTTCACACCTGG-1 4 138457015 T A + 1 1 T>A T>A +AACCATGTCCAATCTT-1_6_34504767_T_C_+ AACCATGTCCAATCTT-1 6 34504767 T C + 1 1 T>C T>C +AAGACAAGTACGTACT-1_2_98667010_G_A_- AAGACAAGTACGTACT-1 2 98667010 G A - 1 1 G>A C>T +AAGACTCGTCAAGTTC-1_4_155559186_C_T_+ AAGACTCGTCAAGTTC-1 4 155559186 C T + 1 1 C>T C>T +AACAAAGTCGTCGGGT-1_17_39847458_A_G_+ AACAAAGTCGTCGGGT-1 17 39847458 A G + 1 1 A>G A>G +AACCTGACAAACCACT-1_10_59899022_T_C_+ AACCTGACAAACCACT-1 10 59899022 T C + 1 1 T>C T>C +AACAGGGGTCGTGATT-1_2_98662303_A_G_+ AACAGGGGTCGTGATT-1 2 98662303 A G + 1 1 A>G A>G +AACAGGGTCGGTCGGT-1_9_59679125_C_T_+ AACAGGGTCGGTCGGT-1 9 59679125 C T + 1 1 C>T C>T +AAACCCACACTGAGGA-1_2_132311814_T_A_+ AAACCCACACTGAGGA-1 2 132311814 T A + 1 1 T>A T>A +AACAACCGTTGCAACT-1_10_3946235_A_C_+ AACAACCGTTGCAACT-1 10 3946235 A C + 1 1 A>C A>C +AACTTCTTCTAGGAAA-1_17_39848018_C_T_+ AACTTCTTCTAGGAAA-1 17 39848018 C T + 1 1 C>T C>T +AACCTGAAGGTAGACC-1_17_39847031_A_G_+ AACCTGAAGGTAGACC-1 17 39847031 A G + 1 1 A>G A>G +AAACGAACAAACGGCA-1_1_77373813_G_A_- AAACGAACAAACGGCA-1 1 77373813 G A - 1 1 G>A C>T +AAACCCACAATCTCTT-1_15_80078716_G_A_- AAACCCACAATCTCTT-1 15 80078716 G A - 1 1 G>A C>T +AACCTTTCAGACCTGC-1_8_68357098_G_A_- AACCTTTCAGACCTGC-1 8 68357098 G A - 1 1 G>A C>T +AACCAACAGGATACGC-1_11_62553009_C_T_+ AACCAACAGGATACGC-1 11 62553009 C T + 1 1 C>T C>T +AACGTCACACTCCTTG-1_19_44073569_A_C_- AACGTCACACTCCTTG-1 19 44073569 A C - 1 1 A>C T>G +AAAGGATCATTCAGGT-1_17_90722443_T_C_- AAAGGATCATTCAGGT-1 17 90722443 T C - 1 1 T>C A>G +AACTTCTCAGAGGACT-1_12_8498232_A_G_- AACTTCTCAGAGGACT-1 12 8498232 A G - 1 1 A>G T>C +AACAAGAGTAGTCTTG-1_2_42189632_A_T_- AACAAGAGTAGTCTTG-1 2 42189632 A T - 1 1 A>T T>A +AAACGCTGTCAACACT-1_17_39847163_T_C_- AAACGCTGTCAACACT-1 17 39847163 T C - 1 1 T>C A>G +AACTTCTCACTAACGT-1_10_108262594_T_A_+ AACTTCTCACTAACGT-1 10 108262594 T A + 1 1 T>A T>A +AACGGGATCTCGAGTA-1_7_118109980_T_C_- AACGGGATCTCGAGTA-1 7 118109980 T C - 1 1 T>C A>G +AACCACAAGCCTTTCC-1_6_82652133_T_A_- AACCACAAGCCTTTCC-1 6 82652133 T A - 1 1 T>A A>T +AAACGAAAGTGGACTG-1_17_83512026_G_A_- AAACGAAAGTGGACTG-1 17 83512026 G A - 1 1 G>A C>T +AACAACCAGTAATACG-1_9_110231537_T_C_+ AACAACCAGTAATACG-1 9 110231537 T C + 1 1 T>C T>C +AAGACTCGTTGCTCGG-1_15_37001858_T_C_- AAGACTCGTTGCTCGG-1 15 37001858 T C - 1 1 T>C A>G +AACAAAGGTGTAGTGG-1_2_49771309_G_A_+ AACAAAGGTGTAGTGG-1 2 49771309 G A + 1 1 G>A G>A +AACCACAAGTTGCCTA-1_18_82573945_A_C_+ AACCACAAGTTGCCTA-1 18 82573945 A C + 1 1 A>C A>C +AAAGTGAAGGCATCGA-1_5_88583610_C_A_+ AAAGTGAAGGCATCGA-1 5 88583610 C A + 1 1 C>A C>A +AAGAACAGTTCGGTTA-1_2_168706298_C_T_- AAGAACAGTTCGGTTA-1 2 168706298 C T - 1 1 C>T G>A +AAACCCAAGGTTTGAA-1_17_39847095_C_G_+ AAACCCAAGGTTTGAA-1 17 39847095 C G + 1 1 C>G C>G +AACCACAAGCTTTGTG-1_18_36744193_A_G_- AACCACAAGCTTTGTG-1 18 36744193 A G - 1 1 A>G T>C +AAGACTCCAACACAGG-1_19_5802614_G_A_- AAGACTCCAACACAGG-1 19 5802614 G A - 1 1 G>A C>T +AAGAACACAAAGGTTA-1_15_76249818_C_T_+ AAGAACACAAAGGTTA-1 15 76249818 C T + 1 1 C>T C>T +AACAAGAGTATACAGA-1_15_89288479_C_T_- AACAAGAGTATACAGA-1 15 89288479 C T - 1 1 C>T G>A +AACAACCTCCAGTGCG-1_2_156388093_G_A_- AACAACCTCCAGTGCG-1 2 156388093 G A - 1 1 G>A C>T +AACAAGACATTCGATG-1_16_57391454_T_C_- AACAAGACATTCGATG-1 16 57391454 T C - 1 1 T>C A>G +AAACCCACACCGTGGT-1_5_104079230_G_A_- AAACCCACACCGTGGT-1 5 104079230 G A - 1 1 G>A C>T +AACGTCATCTACTTCA-1_7_91819588_G_T_+ AACGTCATCTACTTCA-1 7 91819588 G T + 1 1 G>T G>T +AAACCCATCGGATAAA-1_MT_6631_G_A_+ AAACCCATCGGATAAA-1 MT 6631 G A + 1 1 G>A G>A +AAACCCACACCGTGGT-1_19_9984862_C_T_+ AAACCCACACCGTGGT-1 19 9984862 C T + 1 2 C>T C>T +AACTTCTAGAGACAAG-1_18_45685570_T_A_+ AACTTCTAGAGACAAG-1 18 45685570 T A + 1 1 T>A T>A AACCAACGTTTCGTGA-1_19_5800715_G_A_- AACCAACGTTTCGTGA-1 19 5800715 G A - 1 1 G>A C>T -AACTTCTAGGGATCTG-1_19_5107980_C_G_- AACTTCTAGGGATCTG-1 19 5107980 C G - 1 1 C>G G>C +AACAGGGAGGATTACA-1_2_73610680_G_A_- AACAGGGAGGATTACA-1 2 73610680 G A - 1 1 G>A C>T +AACCTTTGTCTCAGGC-1_11_101190333_C_T_+ AACCTTTGTCTCAGGC-1 11 101190333 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_4_137321816_G_A_- AACCACAAGCTTTGTG-1 4 137321816 G A - 1 1 G>A C>T +AAAGAACCACTTACAG-1_17_39848018_C_T_+ AAAGAACCACTTACAG-1 17 39848018 C T + 1 1 C>T C>T +AACAAGAGTGGCGTAA-1_11_64083115_C_A_+ AACAAGAGTGGCGTAA-1 11 64083115 C A + 1 1 C>A C>A +AAAGGGCCAACACAGG-1_17_39847557_G_A_- AAAGGGCCAACACAGG-1 17 39847557 G A - 1 1 G>A C>T +AACCATGAGCGTCGAA-1_17_34601425_G_C_- AACCATGAGCGTCGAA-1 17 34601425 G C - 1 1 G>C C>G +AACACACTCTCGCCTA-1_3_30793330_C_T_+ AACACACTCTCGCCTA-1 3 30793330 C T + 1 1 C>T C>T +AAACGCTGTCAACACT-1_9_95967290_T_C_+ AAACGCTGTCAACACT-1 9 95967290 T C + 1 1 T>C T>C +AACTTCTAGACGCAGT-1_17_39847607_T_C_- AACTTCTAGACGCAGT-1 17 39847607 T C - 1 2 T>C A>G +AAACGCTAGTGTTGAA-1_17_39848018_C_T_+ AAACGCTAGTGTTGAA-1 17 39848018 C T + 1 1 C>T C>T +AAACGCTCAGTAGGAC-1_17_24721062_T_C_+ AAACGCTCAGTAGGAC-1 17 24721062 T C + 1 1 T>C T>C +AACTTCTCAGAGGACT-1_6_56240590_C_T_- AACTTCTCAGAGGACT-1 6 56240590 C T - 1 1 C>T G>A +AACAAAGCACGGCACT-1_4_43032502_T_G_- AACAAAGCACGGCACT-1 4 43032502 T G - 1 1 T>G A>C +AAATGGAGTACCGGAA-1_16_57391454_T_C_- AAATGGAGTACCGGAA-1 16 57391454 T C - 1 1 T>C A>G +AAGACTCGTCAAGTTC-1_15_76249695_C_T_+ AAGACTCGTCAAGTTC-1 15 76249695 C T + 1 1 C>T C>T +AACGAAAGTCCAAATC-1_11_116538306_T_A_- AACGAAAGTCCAAATC-1 11 116538306 T A - 1 1 T>A A>T +AAAGGATAGAGAGCAA-1_17_39848018_C_T_+ AAAGGATAGAGAGCAA-1 17 39848018 C T + 1 1 C>T C>T +AACCAACTCGGAAGGT-1_6_124858558_C_T_- AACCAACTCGGAAGGT-1 6 124858558 C T - 1 1 C>T G>A +AACCTGATCGCTCATC-1_8_58775213_T_C_- AACCTGATCGCTCATC-1 8 58775213 T C - 1 1 T>C A>G +AACGTCACACTCCTTG-1_7_128696015_T_C_+ AACGTCACACTCCTTG-1 7 128696015 T C + 1 1 T>C T>C +AAGACAATCTCTATAC-1_10_80403101_T_G_- AAGACAATCTCTATAC-1 10 80403101 T G - 1 1 T>G A>C +AAGAACAGTTGCAAGG-1_MT_15086_C_T_+ AAGAACAGTTGCAAGG-1 MT 15086 C T + 1 2 C>T C>T +AACTTCTTCTTAATCC-1_16_15556013_G_A_- AACTTCTTCTTAATCC-1 16 15556013 G A - 1 1 G>A C>T +AAAGGTACAGGACAGT-1_12_30895195_A_G_- AAAGGTACAGGACAGT-1 12 30895195 A G - 1 1 A>G T>C +AACTTCTTCTTAATCC-1_5_104079327_A_G_- AACTTCTTCTTAATCC-1 5 104079327 A G - 1 1 A>G T>C +AAAGGTACAAACCACT-1_4_102975901_T_A_- AAAGGTACAAACCACT-1 4 102975901 T A - 1 1 T>A A>T +AAGAACAAGGGTTTCT-1_9_78485616_G_A_- AAGAACAAGGGTTTCT-1 9 78485616 G A - 1 1 G>A C>T +AACCACAAGGACAGCT-1_7_91218969_T_G_+ AACCACAAGGACAGCT-1 7 91218969 T G + 1 1 T>G T>G +AACACACCAGACCAGA-1_7_34202413_G_A_- AACACACCAGACCAGA-1 7 34202413 G A - 1 1 G>A C>T +AAAGGGCCACACTTAG-1_9_40785047_G_T_+ AAAGGGCCACACTTAG-1 9 40785047 G T + 1 1 G>T G>T +AACCTTTCATTGAAAG-1_13_54796554_T_G_+ AACCTTTCATTGAAAG-1 13 54796554 T G + 1 1 T>G T>G +AAAGTCCTCGAACACT-1_2_5379332_A_T_- AAAGTCCTCGAACACT-1 2 5379332 A T - 1 1 A>T T>A +AACGTCATCTGGCTGG-1_6_115263867_C_T_+ AACGTCATCTGGCTGG-1 6 115263867 C T + 1 1 C>T C>T +AACCTTTCATTGAAAG-1_13_54796577_A_T_+ AACCTTTCATTGAAAG-1 13 54796577 A T + 1 1 A>T A>T +AAAGTCCCACAAATGA-1_6_71389163_A_T_- AAAGTCCCACAAATGA-1 6 71389163 A T - 1 1 A>T T>A +AACAGGGGTCGTGATT-1_2_98662298_C_A_+ AACAGGGGTCGTGATT-1 2 98662298 C A + 1 1 C>A C>A +AACAACCAGTTACTCG-1_19_24678064_A_G_+ AACAACCAGTTACTCG-1 19 24678064 A G + 1 1 A>G A>G +AACGAAACACACCTGG-1_17_39847403_T_G_+ AACGAAACACACCTGG-1 17 39847403 T G + 1 1 T>G T>G +AAGACAAAGGGCAAGG-1_5_25272667_T_C_- AAGACAAAGGGCAAGG-1 5 25272667 T C - 1 1 T>C A>G +AAGACAAGTACTGACT-1_12_29611420_G_A_+ AAGACAAGTACTGACT-1 12 29611420 G A + 1 1 G>A G>A +AACGTCACAAGAATGT-1_2_41871099_T_C_- AACGTCACAAGAATGT-1 2 41871099 T C - 1 1 T>C A>G +AACAGGGTCTTCCACG-1_2_5379370_T_G_- AACAGGGTCTTCCACG-1 2 5379370 T G - 1 1 T>G A>C +AAGAACACAGGGAATC-1_5_143505609_A_G_- AAGAACACAGGGAATC-1 5 143505609 A G - 1 1 A>G T>C +AACGTCATCGTGGCGT-1_10_80540995_G_A_- AACGTCATCGTGGCGT-1 10 80540995 G A - 1 1 G>A C>T +AAAGTCCCACCACATA-1_9_67957984_T_A_+ AAAGTCCCACCACATA-1 9 67957984 T A + 1 1 T>A T>A +AAATGGAGTACCGGAA-1_8_40327302_T_A_+ AAATGGAGTACCGGAA-1 8 40327302 T A + 1 1 T>A T>A +AAAGGGCCACCAGTTA-1_1_125393881_C_T_- AAAGGGCCACCAGTTA-1 1 125393881 C T - 1 1 C>T G>A +AACGGGAGTTTGGCTA-1_12_87042004_C_T_+ AACGGGAGTTTGGCTA-1 12 87042004 C T + 1 1 C>T C>T +AACCTGACATCGTCCT-1_14_103080885_C_T_- AACCTGACATCGTCCT-1 14 103080885 C T - 1 1 C>T G>A +AAGACTCAGAGGGTCT-1_7_45367976_T_C_- AAGACTCAGAGGGTCT-1 7 45367976 T C - 1 1 T>C A>G +AAAGTCCCATAACGGG-1_2_5379332_A_T_- AAAGTCCCATAACGGG-1 2 5379332 A T - 1 1 A>T T>A +AAACCCACAAAGACGC-1_17_29100513_T_G_+ AAACCCACAAAGACGC-1 17 29100513 T G + 1 1 T>G T>G +AAATGGACAAGTGGAC-1_9_3020901_T_C_+ AAATGGACAAGTGGAC-1 9 3020901 T C + 1 1 T>C T>C +AACACACAGTGCACAG-1_17_39843289_C_T_+ AACACACAGTGCACAG-1 17 39843289 C T + 1 1 C>T C>T +AAGACTCGTCAAGTTC-1_15_76249717_T_C_+ AAGACTCGTCAAGTTC-1 15 76249717 T C + 1 1 T>C T>C +AAATGGATCCCTTGTG-1_14_122492066_G_C_+ AAATGGATCCCTTGTG-1 14 122492066 G C + 1 1 G>C G>C +AAGAACACACCGTGCA-1_17_24721264_C_T_+ AAGAACACACCGTGCA-1 17 24721264 C T + 1 1 C>T C>T +AACAAAGCAATCAGCT-1_11_109401227_C_A_+ AACAAAGCAATCAGCT-1 11 109401227 C A + 1 1 C>A C>A +AACACACAGGATCACG-1_17_39848018_C_T_+ AACACACAGGATCACG-1 17 39848018 C T + 1 1 C>T C>T +AAAGAACCAGCAAGAC-1_14_54368397_C_T_+ AAAGAACCAGCAAGAC-1 14 54368397 C T + 1 1 C>T C>T +AAAGTCCCACAGTATC-1_9_72104917_C_T_- AAAGTCCCACAGTATC-1 9 72104917 C T - 1 1 C>T G>A +AACAGGGCACCACTGG-1_9_3014281_T_G_- AACAGGGCACCACTGG-1 9 3014281 T G - 1 1 T>G A>C +AAACCCACAATCTCTT-1_5_19814841_A_C_+ AAACCCACAATCTCTT-1 5 19814841 A C + 1 1 A>C A>C +AAAGGGCCATGTCTAG-1_16_43637755_A_T_+ AAAGGGCCATGTCTAG-1 16 43637755 A T + 1 1 A>T A>T +AAGACAAGTACTGACT-1_8_86060568_A_T_+ AAGACAAGTACTGACT-1 8 86060568 A T + 1 1 A>T A>T +AACCTGACAGCTGTCG-1_11_102887430_T_G_- AACCTGACAGCTGTCG-1 11 102887430 T G - 1 1 T>G A>C +AACGAAACAGGAATAT-1_9_3017993_T_G_- AACGAAACAGGAATAT-1 9 3017993 T G - 1 1 T>G A>C +AAAGGATGTGAGAGGG-1_17_39848100_A_T_+ AAAGGATGTGAGAGGG-1 17 39848100 A T + 1 1 A>T A>T +AACAGGGCACCACTGG-1_9_3014261_T_C_- AACAGGGCACCACTGG-1 9 3014261 T C - 1 1 T>C A>G +AAACGAAAGGCTTTCA-1_10_59949747_A_C_- AAACGAAAGGCTTTCA-1 10 59949747 A C - 1 1 A>C T>G +AACCTGATCTAGTACG-1_2_3284311_C_T_+ AACCTGATCTAGTACG-1 2 3284311 C T + 1 1 C>T C>T +AAATGGAAGCAGATAT-1_17_39848018_C_T_- AAATGGAAGCAGATAT-1 17 39848018 C T - 1 1 C>T G>A +AAGACTCTCATTGGTG-1_9_3035768_G_T_- AAGACTCTCATTGGTG-1 9 3035768 G T - 1 1 G>T C>A +AAGATAGAGACCAGCA-1_14_32179074_C_T_+ AAGATAGAGACCAGCA-1 14 32179074 C T + 1 1 C>T C>T +AAGACTCGTGGTACAG-1_4_133965029_G_A_- AAGACTCGTGGTACAG-1 4 133965029 G A - 1 1 G>A C>T +AAACGCTCATCAACCA-1_8_65778045_G_A_+ AAACGCTCATCAACCA-1 8 65778045 G A + 1 1 G>A G>A +AACAAAGAGCCGATTT-1_15_40804837_A_T_+ AACAAAGAGCCGATTT-1 15 40804837 A T + 1 1 A>T A>T +AACGAAACAGGAATAT-1_9_3017942_C_T_- AACGAAACAGGAATAT-1 9 3017942 C T - 1 1 C>T G>A +AAAGGGCCACACTTAG-1_9_40785057_A_T_+ AAAGGGCCACACTTAG-1 9 40785057 A T + 1 1 A>T A>T +AAGACAAAGGGCAGGA-1_2_130754474_A_C_- AAGACAAAGGGCAGGA-1 2 130754474 A C - 1 1 A>C T>G +AACGGGATCCTGCCAT-1_17_87137513_G_A_+ AACGGGATCCTGCCAT-1 17 87137513 G A + 1 1 G>A G>A +AAACGAAGTTCATCTT-1_11_5525883_A_G_+ AAACGAAGTTCATCTT-1 11 5525883 A G + 1 1 A>G A>G +AAACGCTCAGTAGGAC-1_17_35267094_C_T_+ AAACGCTCAGTAGGAC-1 17 35267094 C T + 1 1 C>T C>T +AACGTCAAGAGAAGGT-1_12_41451915_A_G_- AACGTCAAGAGAAGGT-1 12 41451915 A G - 1 1 A>G T>C +AAACCCACATATCTGG-1_19_5456852_A_G_- AAACCCACATATCTGG-1 19 5456852 A G - 1 1 A>G T>C +AAAGGGCCACTGAATC-1_16_57391580_A_C_- AAAGGGCCACTGAATC-1 16 57391580 A C - 1 1 A>C T>G +AAGAACAGTTGCTCCT-1_4_116990343_C_T_- AAGAACAGTTGCTCCT-1 4 116990343 C T - 1 1 C>T G>A +AAATGGAGTAGCGCCT-1_5_146261122_A_G_+ AAATGGAGTAGCGCCT-1 5 146261122 A G + 1 1 A>G A>G +AACAGGGAGGTGCTGA-1_10_108831120_A_G_- AACAGGGAGGTGCTGA-1 10 108831120 A G - 1 1 A>G T>C +AAAGGATTCTAGGCAT-1_16_94782594_A_G_- AAAGGATTCTAGGCAT-1 16 94782594 A G - 1 1 A>G T>C +AAACGAAGTCGTTCAA-1_11_98030355_C_T_+ AAACGAAGTCGTTCAA-1 11 98030355 C T + 1 1 C>T C>T +AAAGTCCAGTCGGCCT-1_13_98309973_G_A_- AAAGTCCAGTCGGCCT-1 13 98309973 G A - 1 1 G>A C>T +AACCTGATCGCTCATC-1_4_32814880_T_C_- AACCTGATCGCTCATC-1 4 32814880 T C - 1 1 T>C A>G +AAAGTCCTCTGCGATA-1_7_116332983_G_A_- AAAGTCCTCTGCGATA-1 7 116332983 G A - 1 1 G>A C>T +AAAGGGCGTCCTATAG-1_11_58308425_C_T_+ AAAGGGCGTCCTATAG-1 11 58308425 C T + 1 1 C>T C>T +AACCAACCACGGTAGA-1_X_169990761_T_G_+ AACCAACCACGGTAGA-1 X 169990761 T G + 1 1 T>G T>G +AAAGTCCTCACGATAC-1_16_91647904_C_T_+ AAAGTCCTCACGATAC-1 16 91647904 C T + 1 1 C>T C>T +AACGTCATCTATACGG-1_1_84370523_G_A_- AACGTCATCTATACGG-1 1 84370523 G A - 1 1 G>A C>T +AAAGTCCAGTCGGCCT-1_11_82901716_G_A_- AAAGTCCAGTCGGCCT-1 11 82901716 G A - 1 1 G>A C>T +AAGAACAGTACGTAGG-1_2_42189632_A_T_- AAGAACAGTACGTAGG-1 2 42189632 A T - 1 1 A>T T>A +AAGAACAGTCCTGGTG-1_13_74032222_C_T_+ AAGAACAGTCCTGGTG-1 13 74032222 C T + 1 1 C>T C>T +AACGTCACACGAGGTA-1_14_20703400_A_G_+ AACGTCACACGAGGTA-1 14 20703400 A G + 1 1 A>G A>G +AACACACCATCGTCCT-1_15_75924860_G_T_- AACACACCATCGTCCT-1 15 75924860 G T - 1 1 G>T C>A +AAATGGAGTGAGTAGC-1_1_184819288_A_G_- AAATGGAGTGAGTAGC-1 1 184819288 A G - 1 1 A>G T>C +AACACACGTTTGTTCT-1_10_127182646_G_A_- AACACACGTTTGTTCT-1 10 127182646 G A - 1 1 G>A C>T +AAAGGTAAGTACTGTC-1_1_9942660_G_A_- AAAGGTAAGTACTGTC-1 1 9942660 G A - 1 1 G>A C>T +AAACCCACAATCTCTT-1_5_135790256_A_G_+ AAACCCACAATCTCTT-1 5 135790256 A G + 1 1 A>G A>G +AAACGAACAACTGGTT-1_7_102000105_G_C_+ AAACGAACAACTGGTT-1 7 102000105 G C + 1 1 G>C G>C +AACCCAAAGCGTATAA-1_MT_7536_T_C_+ AACCCAAAGCGTATAA-1 MT 7536 T C + 1 1 T>C T>C +AACCATGGTCATACCA-1_8_82055554_T_C_+ AACCATGGTCATACCA-1 8 82055554 T C + 1 1 T>C T>C +AACGGGATCCCGAACG-1_11_102289352_A_G_- AACGGGATCCCGAACG-1 11 102289352 A G - 1 1 A>G T>C +AACCACACAATCTGCA-1_17_39847607_T_C_+ AACCACACAATCTGCA-1 17 39847607 T C + 1 1 T>C T>C +AACACACCAGACCAGA-1_18_34221569_T_A_+ AACACACCAGACCAGA-1 18 34221569 T A + 1 1 T>A T>A +AAGAACAGTTCGGTTA-1_3_103057598_T_A_+ AAGAACAGTTCGGTTA-1 3 103057598 T A + 1 1 T>A T>A +AACAACCAGTAATACG-1_13_110400688_G_T_+ AACAACCAGTAATACG-1 13 110400688 G T + 1 1 G>T G>T +AAACCCAGTGCTCGTG-1_1_165944709_A_G_- AAACCCAGTGCTCGTG-1 1 165944709 A G - 1 1 A>G T>C +AAAGGGCTCTCACTCG-1_6_34766665_C_A_+ AAAGGGCTCTCACTCG-1 6 34766665 C A + 1 1 C>A C>A +AAATGGATCTTCCTAA-1_2_5379332_A_T_- AAATGGATCTTCCTAA-1 2 5379332 A T - 1 1 A>T T>A +AACCACATCTTACACT-1_12_53872716_T_C_+ AACCACATCTTACACT-1 12 53872716 T C + 1 1 T>C T>C +AACAAAGGTGTAGTGG-1_2_5379332_A_T_- AACAAAGGTGTAGTGG-1 2 5379332 A T - 1 1 A>T T>A +AACAGGGGTGCCAAGA-1_17_39848018_C_T_+ AACAGGGGTGCCAAGA-1 17 39848018 C T + 1 1 C>T C>T +AACCACAAGTTGCCTA-1_19_5802084_A_G_- AACCACAAGTTGCCTA-1 19 5802084 A G - 1 3 A>G T>C +AAGAACAAGGGTTTCT-1_2_4037291_A_T_+ AAGAACAAGGGTTTCT-1 2 4037291 A T + 1 1 A>T A>T +AACACACCAGACCAGA-1_9_34553080_A_C_+ AACACACCAGACCAGA-1 9 34553080 A C + 1 1 A>C A>C +AAACGAAAGTCGCGAA-1_12_99543073_C_T_- AAACGAAAGTCGCGAA-1 12 99543073 C T - 1 1 C>T G>A +AAGACAAGTAACAGTA-1_14_18282870_G_A_- AAGACAAGTAACAGTA-1 14 18282870 G A - 1 1 G>A C>T +AACAACCAGTAATACG-1_11_81876687_C_T_- AACAACCAGTAATACG-1 11 81876687 C T - 1 1 C>T G>A +AAACCCATCAAGCCAT-1_12_53980249_T_C_+ AAACCCATCAAGCCAT-1 12 53980249 T C + 1 1 T>C T>C +AAGATAGCACGCGTGT-1_1_59875752_T_A_+ AAGATAGCACGCGTGT-1 1 59875752 T A + 1 1 T>A T>A +AACACACAGTGCACAG-1_9_70554654_G_A_+ AACACACAGTGCACAG-1 9 70554654 G A + 1 1 G>A G>A +AACTTCTAGCAGATAT-1_6_96327212_T_G_+ AACTTCTAGCAGATAT-1 6 96327212 T G + 1 1 T>G T>G +AAATGGACAAGCGCAA-1_4_130338559_C_T_- AAATGGACAAGCGCAA-1 4 130338559 C T - 1 1 C>T G>A +AAGACAATCTTAGGAC-1_2_98662469_G_A_+ AAGACAATCTTAGGAC-1 2 98662469 G A + 1 1 G>A G>A +AAGAACATCGCTCTCA-1_5_76873302_C_T_+ AAGAACATCGCTCTCA-1 5 76873302 C T + 1 1 C>T C>T +AACACACAGTGCACAG-1_9_70554626_A_G_+ AACACACAGTGCACAG-1 9 70554626 A G + 1 1 A>G A>G +AAACGCTCAGTAGGAC-1_16_23113767_C_T_+ AAACGCTCAGTAGGAC-1 16 23113767 C T + 1 1 C>T C>T +AAAGTCCCATAGCACT-1_14_55116601_C_T_- AAAGTCCCATAGCACT-1 14 55116601 C T - 1 1 C>T G>A +AAGACAAAGAGTTCGG-1_MT_15056_A_G_+ AAGACAAAGAGTTCGG-1 MT 15056 A G + 1 1 A>G A>G +AACTTCTAGACGCAGT-1_7_18850797_A_G_+ AACTTCTAGACGCAGT-1 7 18850797 A G + 1 1 A>G A>G +AAGAACAAGGTCGAGT-1_14_37121182_G_A_- AAGAACAAGGTCGAGT-1 14 37121182 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_1_169695718_C_T_+ AAACGCTCAGTAGGAC-1 1 169695718 C T + 1 1 C>T C>T +AAAGTCCGTGGGTCAA-1_2_5379370_T_G_- AAAGTCCGTGGGTCAA-1 2 5379370 T G - 1 1 T>G A>C +AACCACAAGCTTTGTG-1_13_99421650_G_A_- AACCACAAGCTTTGTG-1 13 99421650 G A - 1 1 G>A C>T +AACCATGTCCTCGCAT-1_16_27452121_A_G_+ AACCATGTCCTCGCAT-1 16 27452121 A G + 1 1 A>G A>G +AAGATAGAGCATGAAT-1_17_39848018_C_T_+ AAGATAGAGCATGAAT-1 17 39848018 C T + 1 1 C>T C>T +AACCTGACATCGTCCT-1_11_102289437_G_A_- AACCTGACATCGTCCT-1 11 102289437 G A - 1 1 G>A C>T +AAAGTCCAGTCGGCCT-1_11_83404845_C_T_+ AAAGTCCAGTCGGCCT-1 11 83404845 C T + 1 1 C>T C>T +AAAGTCCAGTCGGCCT-1_17_6308094_C_T_+ AAAGTCCAGTCGGCCT-1 17 6308094 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_7_109519988_C_T_+ AACCACAAGCTTTGTG-1 7 109519988 C T + 1 1 C>T C>T +AAACCCACATATCTGG-1_17_24854306_A_C_+ AAACCCACATATCTGG-1 17 24854306 A C + 1 1 A>C A>C +AAGACAAAGGGCAAGG-1_17_39847458_A_G_- AAGACAAAGGGCAAGG-1 17 39847458 A G - 1 1 A>G T>C +AAAGAACAGAGGTTAT-1_1_167639398_T_C_+ AAAGAACAGAGGTTAT-1 1 167639398 T C + 1 1 T>C T>C +AAACCCACACCGTGGT-1_7_16915467_G_T_- AAACCCACACCGTGGT-1 7 16915467 G T - 1 1 G>T C>A +AAAGGGCCACTTCAAG-1_17_39847607_T_C_+ AAAGGGCCACTTCAAG-1 17 39847607 T C + 1 1 T>C T>C +AACCAACTCAGTGGGA-1_4_102972014_G_T_+ AACCAACTCAGTGGGA-1 4 102972014 G T + 1 1 G>T G>T +AAACGCTCAGTAGGAC-1_4_129111630_G_A_- AAACGCTCAGTAGGAC-1 4 129111630 G A - 1 1 G>A C>T +AAACGAACAAACGGCA-1_2_166946203_T_A_+ AAACGAACAAACGGCA-1 2 166946203 T A + 1 1 T>A T>A +AACCATGAGTTCCGTA-1_14_93634215_C_T_- AACCATGAGTTCCGTA-1 14 93634215 C T - 1 1 C>T G>A +AACCAACGTAACAGGC-1_9_75565789_A_T_- AACCAACGTAACAGGC-1 9 75565789 A T - 1 1 A>T T>A +AACGGGATCTCGAGTA-1_15_25363478_A_T_- AACGGGATCTCGAGTA-1 15 25363478 A T - 1 1 A>T T>A +AAGACTCGTCCACATA-1_13_8987883_G_A_- AAGACTCGTCCACATA-1 13 8987883 G A - 1 1 G>A C>T +AACGAAACAACTACGT-1_6_113745880_G_T_- AACGAAACAACTACGT-1 6 113745880 G T - 1 1 G>T C>A +AAGACAATCGAGCTGC-1_14_31373783_A_T_- AAGACAATCGAGCTGC-1 14 31373783 A T - 1 1 A>T T>A +AAAGTCCTCTCCGAGG-1_4_78177711_C_T_- AAAGTCCTCTCCGAGG-1 4 78177711 C T - 1 1 C>T G>A +AAGACTCTCGGAGATG-1_5_49383649_G_A_- AAGACTCTCGGAGATG-1 5 49383649 G A - 1 1 G>A C>T +AACCAACAGCCAAGGT-1_9_3035173_G_C_- AACCAACAGCCAAGGT-1 9 3035173 G C - 1 1 G>C C>G +AACAAGAGTTACCTGA-1_9_3014334_A_T_- AACAAGAGTTACCTGA-1 9 3014334 A T - 1 1 A>T T>A +AAATGGACAAGCGCAA-1_11_94075519_T_A_+ AAATGGACAAGCGCAA-1 11 94075519 T A + 1 1 T>A T>A +AAATGGATCTCCACTG-1_17_39847207_T_A_+ AAATGGATCTCCACTG-1 17 39847207 T A + 1 2 T>A T>A +AACTTCTCATGAATAG-1_8_94154068_A_C_+ AACTTCTCATGAATAG-1 8 94154068 A C + 1 2 A>C A>C +AACTTCTAGAGTCCGA-1_14_18269154_G_A_- AACTTCTAGAGTCCGA-1 14 18269154 G A - 1 1 G>A C>T +AACCTGACAGCTGTCG-1_8_57456383_C_T_+ AACCTGACAGCTGTCG-1 8 57456383 C T + 1 1 C>T C>T +AAAGTCCTCCGATGCG-1_10_9828382_C_T_- AAAGTCCTCCGATGCG-1 10 9828382 C T - 1 1 C>T G>A +AAGAACAGTGCGTTTA-1_2_98662868_C_A_+ AAGAACAGTGCGTTTA-1 2 98662868 C A + 1 1 C>A C>A +AAAGTCCTCTGCGATA-1_2_51707072_T_C_- AAAGTCCTCTGCGATA-1 2 51707072 T C - 1 1 T>C A>G +AAATGGAGTACCGGAA-1_7_37472344_A_G_- AAATGGAGTACCGGAA-1 7 37472344 A G - 1 1 A>G T>C +AAGATAGAGGAATCGC-1_15_82350294_T_C_- AAGATAGAGGAATCGC-1 15 82350294 T C - 1 1 T>C A>G +AACCACACAGCTCTGG-1_10_82620110_A_T_- AACCACACAGCTCTGG-1 10 82620110 A T - 1 1 A>T T>A +AACGGGAGTCAGGCAA-1_9_75565805_A_C_- AACGGGAGTCAGGCAA-1 9 75565805 A C - 1 1 A>C T>G +AAATGGAGTAGTGTGG-1_16_57391550_C_G_- AAATGGAGTAGTGTGG-1 16 57391550 C G - 1 1 C>G G>C +AACCATGTCATCGCTC-1_7_141451275_G_T_+ AACCATGTCATCGCTC-1 7 141451275 G T + 1 1 G>T G>T +AACTTCTCACACGTGC-1_17_10569225_A_G_+ AACTTCTCACACGTGC-1 17 10569225 A G + 1 1 A>G A>G +AAGAACAGTAAGATAC-1_1_38042855_T_A_+ AAGAACAGTAAGATAC-1 1 38042855 T A + 1 1 T>A T>A +AAACCCAGTGTGCCTG-1_7_46084078_G_T_+ AAACCCAGTGTGCCTG-1 7 46084078 G T + 1 1 G>T G>T +AAATGGAAGATAACGT-1_16_57391454_T_C_- AAATGGAAGATAACGT-1 16 57391454 T C - 1 1 T>C A>G +AAACGAAGTTCATCTT-1_4_46662908_G_A_- AAACGAAGTTCATCTT-1 4 46662908 G A - 1 1 G>A C>T +AAAGGGCGTTCCAAAC-1_16_41319573_T_A_+ AAAGGGCGTTCCAAAC-1 16 41319573 T A + 1 1 T>A T>A +AACCATGTCCGTGCGA-1_17_39847403_T_G_+ AACCATGTCCGTGCGA-1 17 39847403 T G + 1 1 T>G T>G +AACCTGAGTCCAGTTA-1_6_88103726_A_T_+ AACCTGAGTCCAGTTA-1 6 88103726 A T + 1 1 A>T A>T +AACCCAAGTTGAGAGC-1_11_120346083_T_C_- AACCCAAGTTGAGAGC-1 11 120346083 T C - 1 1 T>C A>G +AACCCAATCCTCTAGC-1_16_13702447_C_T_+ AACCCAATCCTCTAGC-1 16 13702447 C T + 1 1 C>T C>T +AAAGTCCTCTGCGATA-1_2_5379332_A_T_- AAAGTCCTCTGCGATA-1 2 5379332 A T - 1 1 A>T T>A +AAAGAACCAACTTCTT-1_17_39847458_A_G_- AAAGAACCAACTTCTT-1 17 39847458 A G - 1 1 A>G T>C +AACCTGAAGTCCCAGC-1_4_102976010_C_T_- AACCTGAAGTCCCAGC-1 4 102976010 C T - 1 1 C>T G>A +AACTTCTAGCAGATAT-1_5_36630638_A_G_- AACTTCTAGCAGATAT-1 5 36630638 A G - 1 1 A>G T>C +AAAGTCCAGTCTGGTT-1_11_102887430_T_G_- AAAGTCCAGTCTGGTT-1 11 102887430 T G - 1 1 T>G A>C +AACTTCTCACACGTGC-1_X_136838163_A_G_+ AACTTCTCACACGTGC-1 X 136838163 A G + 1 4 A>G A>G +AAAGTCCGTACAAGTA-1_11_72686388_C_T_+ AAAGTCCGTACAAGTA-1 11 72686388 C T + 1 1 C>T C>T +AACCTGACACACAGAG-1_17_39848018_C_T_+ AACCTGACACACAGAG-1 17 39848018 C T + 1 1 C>T C>T +AAACGCTGTCCACATA-1_4_49649980_C_T_+ AAACGCTGTCCACATA-1 4 49649980 C T + 1 1 C>T C>T +AACGGGAAGTTGCCCG-1_17_39848018_C_T_+ AACGGGAAGTTGCCCG-1 17 39848018 C T + 1 1 C>T C>T +AACCCAATCATTCACT-1_9_123461940_T_G_+ AACCCAATCATTCACT-1 9 123461940 T G + 1 1 T>G T>G +AAAGTCCTCTGCGATA-1_10_80404207_A_C_- AAAGTCCTCTGCGATA-1 10 80404207 A C - 1 1 A>C T>G +AAATGGAAGCCAAGGT-1_10_90956092_C_A_+ AAATGGAAGCCAAGGT-1 10 90956092 C A + 1 1 C>A C>A +AAGACAAAGATGCTAA-1_11_102477391_G_A_- AAGACAAAGATGCTAA-1 11 102477391 G A - 1 1 G>A C>T +AAACCCACACCGTGGT-1_9_37544710_G_A_- AAACCCACACCGTGGT-1 9 37544710 G A - 1 1 G>A C>T +AAAGTCCAGTCGGCCT-1_4_40733642_C_T_+ AAAGTCCAGTCGGCCT-1 4 40733642 C T + 1 1 C>T C>T +AACGGGAAGTTGCCCG-1_4_56957239_G_A_- AACGGGAAGTTGCCCG-1 4 56957239 G A - 1 1 G>A C>T +AAATGGACATCCGGCA-1_2_169720166_T_C_- AAATGGACATCCGGCA-1 2 169720166 T C - 1 1 T>C A>G +AACCACAAGACATACA-1_10_75859369_A_G_- AACCACAAGACATACA-1 10 75859369 A G - 1 1 A>G T>C +AAACCCACATATCTGG-1_19_57979701_T_C_+ AAACCCACATATCTGG-1 19 57979701 T C + 1 1 T>C T>C +AACAACCCATGTAACC-1_11_48806003_C_T_+ AACAACCCATGTAACC-1 11 48806003 C T + 1 1 C>T C>T +AAAGTCCTCGCGTAGC-1_6_125460398_G_A_- AAAGTCCTCGCGTAGC-1 6 125460398 G A - 1 1 G>A C>T +AAAGTCCAGTCGGCCT-1_13_86045729_G_A_- AAAGTCCAGTCGGCCT-1 13 86045729 G A - 1 2 G>A C>T +AAAGGGCCAGCGCTTG-1_4_41191278_C_A_+ AAAGGGCCAGCGCTTG-1 4 41191278 C A + 1 1 C>A C>A +AAGAACAGTTCGGTTA-1_9_123461940_T_G_+ AAGAACAGTTCGGTTA-1 9 123461940 T G + 1 1 T>G T>G +AAAGTGATCCGCTGTT-1_17_39848018_C_T_+ AAAGTGATCCGCTGTT-1 17 39848018 C T + 2 2 C>T C>T +AACCTGACAAACCACT-1_10_59899021_C_T_+ AACCTGACAAACCACT-1 10 59899021 C T + 1 1 C>T C>T +AAGAACATCTCCGAAA-1_3_95475432_A_T_+ AAGAACATCTCCGAAA-1 3 95475432 A T + 1 1 A>T A>T +AACAACCAGACGACTG-1_16_41990706_T_A_+ AACAACCAGACGACTG-1 16 41990706 T A + 1 1 T>A T>A +AAAGGTACAATTGCAC-1_19_10245356_G_A_- AAAGGTACAATTGCAC-1 19 10245356 G A - 1 1 G>A C>T +AACAAAGGTCGCTGCA-1_5_121205797_C_T_+ AACAAAGGTCGCTGCA-1 5 121205797 C T + 1 1 C>T C>T +AACCACAGTCTACAAC-1_8_71534682_A_C_- AACCACAGTCTACAAC-1 8 71534682 A C - 1 1 A>C T>G +AAGATAGCACGCGTGT-1_12_117626566_G_A_+ AAGATAGCACGCGTGT-1 12 117626566 G A + 1 1 G>A G>A +AAGAACATCTCCGAAA-1_12_31926680_T_G_- AAGAACATCTCCGAAA-1 12 31926680 T G - 1 1 T>G A>C +AAACGCTCACCTAAAC-1_3_108361406_T_C_+ AAACGCTCACCTAAAC-1 3 108361406 T C + 1 1 T>C T>C +AACCAACTCGATGGAG-1_16_91563849_C_A_+ AACCAACTCGATGGAG-1 16 91563849 C A + 1 1 C>A C>A +AAACCCAGTCACCGCA-1_17_39846189_A_G_+ AAACCCAGTCACCGCA-1 17 39846189 A G + 1 1 A>G A>G +AAGACTCCAGAAACCG-1_17_39847403_T_G_+ AAGACTCCAGAAACCG-1 17 39847403 T G + 1 1 T>G T>G +AACACACGTTAAACAG-1_7_34202257_G_A_- AACACACGTTAAACAG-1 7 34202257 G A - 1 1 G>A C>T +AACCAACTCGATGGAG-1_4_87170650_G_A_- AACCAACTCGATGGAG-1 4 87170650 G A - 1 1 G>A C>T +AAACGCTGTCAACACT-1_17_31091202_C_G_+ AAACGCTGTCAACACT-1 17 31091202 C G + 1 1 C>G C>G +AAGAACATCCTGGTCT-1_11_118301374_G_A_- AAGAACATCCTGGTCT-1 11 118301374 G A - 1 1 G>A C>T +AACCCAAAGAATTGCA-1_1_120113416_G_A_- AACCCAAAGAATTGCA-1 1 120113416 G A - 1 1 G>A C>T +AAGACAAAGGGCAGGA-1_17_34613273_G_C_+ AAGACAAAGGGCAGGA-1 17 34613273 G C + 1 1 G>C G>C +AAATGGAAGTTTCGGT-1_Y_90816411_G_A_+ AAATGGAAGTTTCGGT-1 Y 90816411 G A + 1 1 G>A G>A +AAAGGGCTCTCACTCG-1_1_191176872_C_A_- AAAGGGCTCTCACTCG-1 1 191176872 C A - 1 1 C>A G>T +AAGACTCGTGGCTAGA-1_17_26972326_C_T_+ AAGACTCGTGGCTAGA-1 17 26972326 C T + 1 1 C>T C>T +AACCACATCCGTACGG-1_15_99500086_A_T_- AACCACATCCGTACGG-1 15 99500086 A T - 1 1 A>T T>A +AACACACGTGTTGCCG-1_7_100641132_C_A_+ AACACACGTGTTGCCG-1 7 100641132 C A + 1 1 C>A C>A +AACCACATCTTACACT-1_18_34315132_A_G_+ AACCACATCTTACACT-1 18 34315132 A G + 1 1 A>G A>G +AACCCAATCCCTCATG-1_2_42189614_C_T_- AACCCAATCCCTCATG-1 2 42189614 C T - 1 1 C>T G>A +AAACCCACAGCTGTGC-1_7_25532490_A_G_+ AAACCCACAGCTGTGC-1 7 25532490 A G + 1 1 A>G A>G +AAAGGATTCTAGGCAT-1_4_133077104_T_A_+ AAAGGATTCTAGGCAT-1 4 133077104 T A + 1 1 T>A T>A +AACCATGTCCGTGCGA-1_4_151061037_A_T_- AACCATGTCCGTGCGA-1 4 151061037 A T - 1 1 A>T T>A +AAATGGAAGTTCAACC-1_2_65767333_G_A_+ AAATGGAAGTTCAACC-1 2 65767333 G A + 1 1 G>A G>A +AAGAACAAGTCTCTGA-1_9_3006346_G_A_+ AAGAACAAGTCTCTGA-1 9 3006346 G A + 1 1 G>A G>A +AAAGTCCTCCGATGCG-1_10_9828363_C_T_- AAAGTCCTCCGATGCG-1 10 9828363 C T - 1 1 C>T G>A +AAACCCACATATCTGG-1_13_19150700_G_A_+ AAACCCACATATCTGG-1 13 19150700 G A + 1 1 G>A G>A +AAACGCTCAGTAGGAC-1_17_35267092_C_T_+ AAACGCTCAGTAGGAC-1 17 35267092 C T + 1 1 C>T C>T +AACAACCAGTAACAGT-1_17_39847458_A_G_- AACAACCAGTAACAGT-1 17 39847458 A G - 1 1 A>G T>C +AAAGGGCGTTCCAAAC-1_16_41319663_T_A_+ AAAGGGCGTTCCAAAC-1 16 41319663 T A + 1 1 T>A T>A +AACTTCTCACACGTGC-1_14_54940645_G_C_+ AACTTCTCACACGTGC-1 14 54940645 G C + 1 1 G>C G>C +AACCTTTAGACCAGAC-1_14_70468685_C_A_+ AACCTTTAGACCAGAC-1 14 70468685 C A + 1 1 C>A C>A +AAACCCATCGGATAAA-1_6_80595479_A_C_+ AAACCCATCGGATAAA-1 6 80595479 A C + 1 1 A>C A>C +AACGGGAGTCAAGCGA-1_9_123462100_A_T_+ AACGGGAGTCAAGCGA-1 9 123462100 A T + 1 1 A>T A>T +AAACGCTGTCAACACT-1_X_20899181_C_T_- AAACGCTGTCAACACT-1 X 20899181 C T - 1 1 C>T G>A +AACGAAATCCTGTAAG-1_12_99645645_A_G_+ AACGAAATCCTGTAAG-1 12 99645645 A G + 1 1 A>G A>G +AACTTCTGTGCATGTT-1_16_57391685_G_A_- AACTTCTGTGCATGTT-1 16 57391685 G A - 1 1 G>A C>T +AACGAAAAGTGATAAC-1_17_39847607_T_C_+ AACGAAAAGTGATAAC-1 17 39847607 T C + 1 1 T>C T>C +AAGAACAGTTGCAAGG-1_17_39847607_T_C_+ AAGAACAGTTGCAAGG-1 17 39847607 T C + 1 2 T>C T>C +AACCAACGTCGAACGA-1_16_21897164_A_T_+ AACCAACGTCGAACGA-1 16 21897164 A T + 1 1 A>T A>T +AACAAAGGTAGGGTAC-1_14_65981516_C_T_+ AACAAAGGTAGGGTAC-1 14 65981516 C T + 1 1 C>T C>T +AAGACTCGTTGCTCGG-1_16_7381099_T_C_+ AAGACTCGTTGCTCGG-1 16 7381099 T C + 1 1 T>C T>C +AACTTCTTCGACCACG-1_11_93959258_G_A_- AACTTCTTCGACCACG-1 11 93959258 G A - 1 1 G>A C>T +AACCACAAGCTTTGTG-1_9_72749638_C_T_+ AACCACAAGCTTTGTG-1 9 72749638 C T + 1 1 C>T C>T +AACAAAGCACGGCACT-1_X_136837340_A_C_+ AACAAAGCACGGCACT-1 X 136837340 A C + 1 3 A>C A>C +AAAGGTAAGCATTTGC-1_19_5802659_T_G_- AAAGGTAAGCATTTGC-1 19 5802659 T G - 1 2 T>G A>C +AACAACCAGTTACTCG-1_16_58468448_C_T_- AACAACCAGTTACTCG-1 16 58468448 C T - 1 1 C>T G>A +AAGAACAAGGTCGAGT-1_17_33952225_A_G_- AAGAACAAGGTCGAGT-1 17 33952225 A G - 1 1 A>G T>C +AACCATGAGTTCCGTA-1_11_62524951_A_T_- AACCATGAGTTCCGTA-1 11 62524951 A T - 1 1 A>T T>A +AACAAGAGTACGATGG-1_7_65296229_A_G_- AACAAGAGTACGATGG-1 7 65296229 A G - 1 1 A>G T>C +AAAGAACCAACTTCTT-1_13_90924626_A_G_+ AAAGAACCAACTTCTT-1 13 90924626 A G + 1 1 A>G A>G +AAAGTGAGTATCACCA-1_16_57391685_G_A_- AAAGTGAGTATCACCA-1 16 57391685 G A - 1 1 G>A C>T +AAATGGAAGCCGGATA-1_2_118794836_T_C_+ AAATGGAAGCCGGATA-1 2 118794836 T C + 1 1 T>C T>C +AACCCAAAGAATTGTG-1_13_44869614_A_G_+ AACCCAAAGAATTGTG-1 13 44869614 A G + 1 1 A>G A>G +AAACGAAAGTAGGTTA-1_4_136896681_C_T_- AAACGAAAGTAGGTTA-1 4 136896681 C T - 1 1 C>T G>A +AAACCCACATATCTGG-1_1_13232196_C_T_- AAACCCACATATCTGG-1 1 13232196 C T - 1 1 C>T G>A +AAACGAAAGGAGAGTA-1_9_120960267_C_T_+ AAACGAAAGGAGAGTA-1 9 120960267 C T + 1 1 C>T C>T +AAACCCAGTGCTCGTG-1_1_165944707_C_T_- AAACCCAGTGCTCGTG-1 1 165944707 C T - 1 1 C>T G>A +AAACGAAAGGGAGGTG-1_17_39847403_T_G_+ AAACGAAAGGGAGGTG-1 17 39847403 T G + 1 1 T>G T>G +AAGATAGGTCTCACAA-1_16_57391685_G_A_- AAGATAGGTCTCACAA-1 16 57391685 G A - 1 1 G>A C>T +AACACACCAGACCAGA-1_4_102354661_T_C_+ AACACACCAGACCAGA-1 4 102354661 T C + 1 1 T>C T>C +AAAGTCCTCGGCTCTT-1_1_21864157_C_T_- AAAGTCCTCGGCTCTT-1 1 21864157 C T - 1 1 C>T G>A +AAACCCAAGTTTAGGA-1_2_180258381_C_T_+ AAACCCAAGTTTAGGA-1 2 180258381 C T + 1 1 C>T C>T +AAAGTCCTCCGATGCG-1_7_44463117_G_T_+ AAAGTCCTCCGATGCG-1 7 44463117 G T + 1 1 G>T G>T +AAAGTCCGTAGGTTTC-1_4_130781372_G_A_+ AAAGTCCGTAGGTTTC-1 4 130781372 G A + 1 1 G>A G>A +AAAGAACTCTCACCCA-1_1_82253059_G_T_- AAAGAACTCTCACCCA-1 1 82253059 G T - 1 1 G>T C>A +AAGAACACATGGCGCT-1_3_136935715_C_T_+ AAGAACACATGGCGCT-1 3 136935715 C T + 1 1 C>T C>T +AACAAGAAGCAATTAG-1_5_111388121_T_C_+ AACAAGAAGCAATTAG-1 5 111388121 T C + 1 1 T>C T>C +AACGGGAAGTTGCCCG-1_15_79672663_C_T_+ AACGGGAAGTTGCCCG-1 15 79672663 C T + 1 1 C>T C>T +AACCAACCAGTCGCTG-1_16_17573165_G_A_- AACCAACCAGTCGCTG-1 16 17573165 G A - 1 1 G>A C>T +AAGACTCGTGTCTTGA-1_17_39847458_A_G_+ AAGACTCGTGTCTTGA-1 17 39847458 A G + 1 1 A>G A>G +AACGTCAAGCGAGGAG-1_2_156144580_C_T_+ AACGTCAAGCGAGGAG-1 2 156144580 C T + 1 1 C>T C>T +AAAGGTAAGACTTCAC-1_X_42109543_C_A_+ AAAGGTAAGACTTCAC-1 X 42109543 C A + 1 1 C>A C>A +AACACACGTGGATCAG-1_17_39847525_G_T_- AACACACGTGGATCAG-1 17 39847525 G T - 1 1 G>T C>A +AACAAGAAGCAATTAG-1_7_144371032_T_C_- AACAAGAAGCAATTAG-1 7 144371032 T C - 1 1 T>C A>G +AACTTCTGTGAGATCG-1_11_26471458_A_G_- AACTTCTGTGAGATCG-1 11 26471458 A G - 1 1 A>G T>C +AACACACTCTGCGGAC-1_17_29100725_T_A_+ AACACACTCTGCGGAC-1 17 29100725 T A + 1 1 T>A T>A +AACCTGATCGCTCATC-1_16_6117789_G_A_+ AACCTGATCGCTCATC-1 16 6117789 G A + 1 1 G>A G>A +AAGAACAGTTGGAGGT-1_10_77988119_G_A_- AAGAACAGTTGGAGGT-1 10 77988119 G A - 1 1 G>A C>T +AAGACTCGTGCGGTAA-1_17_25782026_T_G_+ AAGACTCGTGCGGTAA-1 17 25782026 T G + 1 1 T>G T>G +AACCACAGTCCAGAAG-1_7_126795311_G_A_- AACCACAGTCCAGAAG-1 7 126795311 G A - 1 1 G>A C>T +AACCACAAGCTTTGTG-1_16_37509942_G_A_- AACCACAAGCTTTGTG-1 16 37509942 G A - 1 1 G>A C>T +AACCAACGTAGTGTGG-1_9_123461940_T_G_+ AACCAACGTAGTGTGG-1 9 123461940 T G + 1 1 T>G T>G +AAAGGATAGTTCCGGC-1_5_145184581_G_A_- AAAGGATAGTTCCGGC-1 5 145184581 G A - 1 1 G>A C>T +AACCTGATCTTCGTGC-1_7_105746389_A_G_- AACCTGATCTTCGTGC-1 7 105746389 A G - 1 1 A>G T>C +AACCACACAACAACAA-1_17_39847553_A_T_+ AACCACACAACAACAA-1 17 39847553 A T + 1 1 A>T A>T +AAATGGAAGCAGATAT-1_10_72674792_C_T_+ AAATGGAAGCAGATAT-1 10 72674792 C T + 1 1 C>T C>T +AAACGAAAGAGCAACC-1_14_121621014_T_C_- AAACGAAAGAGCAACC-1 14 121621014 T C - 1 1 T>C A>G +AAAGTCCTCACGATAC-1_1_169952564_G_A_- AAAGTCCTCACGATAC-1 1 169952564 G A - 1 1 G>A C>T +AAGATAGAGGAATCGC-1_2_32308961_C_A_- AAGATAGAGGAATCGC-1 2 32308961 C A - 1 1 C>A G>T +AACCTGAAGTCCCAGC-1_7_97406968_T_C_+ AACCTGAAGTCCCAGC-1 7 97406968 T C + 1 1 T>C T>C +AACAACCGTCTCAGAT-1_17_39848080_T_G_+ AACAACCGTCTCAGAT-1 17 39848080 T G + 1 1 T>G T>G +AAGACTCGTTGCTCGG-1_4_57943863_G_A_- AAGACTCGTTGCTCGG-1 4 57943863 G A - 1 1 G>A C>T +AAACGAACAGAACTTC-1_2_98667174_T_G_- AAACGAACAGAACTTC-1 2 98667174 T G - 1 1 T>G A>C +AACCTGAAGCATTGAA-1_6_124913859_G_A_- AACCTGAAGCATTGAA-1 6 124913859 G A - 1 1 G>A C>T +AAACCCAGTACGGGAT-1_2_130984601_T_C_+ AAACCCAGTACGGGAT-1 2 130984601 T C + 1 1 T>C T>C +AACCATGGTGAGTTTC-1_7_124136537_T_A_+ AACCATGGTGAGTTTC-1 7 124136537 T A + 1 1 T>A T>A +AAGAACATCTCCGAAA-1_19_5802189_A_T_- AAGAACATCTCCGAAA-1 19 5802189 A T - 1 4 A>T T>A +AACCTGAGTCCAGTTA-1_2_36036483_G_A_- AACCTGAGTCCAGTTA-1 2 36036483 G A - 1 1 G>A C>T +AAGAACATCGAACACT-1_14_45241350_C_A_+ AAGAACATCGAACACT-1 14 45241350 C A + 1 1 C>A C>A +AAACGAAGTCTCAGAT-1_9_3000520_T_C_- AAACGAAGTCTCAGAT-1 9 3000520 T C - 1 1 T>C A>G +AACTTCTAGCAGATAT-1_19_5802633_G_T_- AACTTCTAGCAGATAT-1 19 5802633 G T - 1 6 G>T C>A +AACTTCTGTAGCACGA-1_17_27631254_A_T_- AACTTCTGTAGCACGA-1 17 27631254 A T - 1 1 A>T T>A +AACCAACGTGGTATGG-1_4_59634800_T_C_+ AACCAACGTGGTATGG-1 4 59634800 T C + 1 1 T>C T>C +AAAGAACAGAATACAC-1_9_31170609_A_T_- AAAGAACAGAATACAC-1 9 31170609 A T - 1 1 A>T T>A +AAAGTCCAGTCGGCCT-1_3_117319196_C_T_- AAAGTCCAGTCGGCCT-1 3 117319196 C T - 1 1 C>T G>A +AAACGAACACGACTAT-1_9_3024488_C_T_- AAACGAACACGACTAT-1 9 3024488 C T - 1 1 C>T G>A +AAAGGATAGTTCCGGC-1_X_13285633_T_A_+ AAAGGATAGTTCCGGC-1 X 13285633 T A + 1 1 T>A T>A +AACCAACGTTCTAAGC-1_5_62609275_A_C_- AACCAACGTTCTAAGC-1 5 62609275 A C - 1 1 A>C T>G +AACAACCGTACTCAAC-1_7_65695514_C_T_+ AACAACCGTACTCAAC-1 7 65695514 C T + 1 1 C>T C>T +AACCTGACAATAGTAG-1_10_60666630_C_T_- AACCTGACAATAGTAG-1 10 60666630 C T - 1 1 C>T G>A +AACAAGATCTGCTTTA-1_2_148871881_C_T_- AACAAGATCTGCTTTA-1 2 148871881 C T - 1 2 C>T G>A +AAGACAAAGGGCAGGA-1_2_98666965_C_T_- AAGACAAAGGGCAGGA-1 2 98666965 C T - 1 1 C>T G>A +AACGGGAAGTTGCCCG-1_7_15917374_G_A_- AACGGGAAGTTGCCCG-1 7 15917374 G A - 1 2 G>A C>T +AACACACGTGTTGCCG-1_18_25478838_T_A_- AACACACGTGTTGCCG-1 18 25478838 T A - 1 1 T>A A>T +AACAAGAAGCAATTAG-1_17_56614504_C_A_- AACAAGAAGCAATTAG-1 17 56614504 C A - 1 1 C>A G>T +AACTTCTTCTTCCCGA-1_9_3014275_C_T_- AACTTCTTCTTCCCGA-1 9 3014275 C T - 1 1 C>T G>A AACGGGAAGTTGCCCG-1_19_5093056_G_A_- AACGGGAAGTTGCCCG-1 19 5093056 G A - 1 1 G>A C>T -AACCTTTTCCGTGTGG-1_19_5802157_T_C_- AACCTTTTCCGTGTGG-1 19 5802157 T C - 1 1 T>C A>G -AAAGTCCAGTCTGGTT-1_19_38636777_G_A_+ AAAGTCCAGTCTGGTT-1 19 38636777 G A + 1 1 G>A G>A -AAACGCTAGGTTACAA-1_19_46312281_G_A_- AAACGCTAGGTTACAA-1 19 46312281 G A - 1 1 G>A C>T -AAAGTGATCTCGGCTT-1_19_7215325_G_A_- AAAGTGATCTCGGCTT-1 19 7215325 G A - 1 1 G>A C>T -AAACGAATCACTTCTA-1_19_7215356_G_A_- AAACGAATCACTTCTA-1 19 7215356 G A - 1 1 G>A C>T -AACCTTTCAGCACAGA-1_19_5802597_C_A_- AACCTTTCAGCACAGA-1 19 5802597 C A - 1 1 C>A G>T -AACTTCTAGGGATCTG-1_19_5107954_T_G_- AACTTCTAGGGATCTG-1 19 5107954 T G - 1 1 T>G A>C -AACCTTTCACACCTGG-1_19_10451310_G_C_+ AACCTTTCACACCTGG-1 19 10451310 G C + 1 1 G>C G>C -AAAGTCCTCCGATGCG-1_19_5802617_T_C_- AAAGTCCTCCGATGCG-1 19 5802617 T C - 1 19 T>C A>G -AACAGGGCAAACTCGT-1_19_45005273_T_C_- AACAGGGCAAACTCGT-1 19 45005273 T C - 1 1 T>C A>G -AACGGGAAGTTGCCCG-1_19_4036691_G_A_- AACGGGAAGTTGCCCG-1 19 4036691 G A - 1 1 G>A C>T -AACAAAGGTAGGGTAC-1_19_6977028_T_C_+ AACAAAGGTAGGGTAC-1 19 6977028 T C + 1 1 T>C T>C -AACACACCAGAGGCTA-1_19_21460260_G_A_- AACACACCAGAGGCTA-1 19 21460260 G A - 1 1 G>A C>T -AAACGAAAGTGGACTG-1_19_7578998_A_G_+ AAACGAAAGTGGACTG-1 19 7578998 A G + 1 1 A>G A>G -AAAGGTAGTATGTGTC-1_19_5802631_G_T_- AAAGGTAGTATGTGTC-1 19 5802631 G T - 1 17 G>T C>A -AACTTCTTCTTCACGC-1_19_5801984_A_T_- AACTTCTTCTTCACGC-1 19 5801984 A T - 1 1 A>T T>A -AACCAACTCGATGGAG-1_19_7215356_G_A_- AACCAACTCGATGGAG-1 19 7215356 G A - 1 2 G>A C>T +AAGAACATCGCTCTCA-1_17_39847826_C_T_+ AAGAACATCGCTCTCA-1 17 39847826 C T + 1 1 C>T C>T +AACAACCAGTAATACG-1_9_110231539_T_A_+ AACAACCAGTAATACG-1 9 110231539 T A + 1 1 T>A T>A +AAGACTCCACTCACTC-1_10_13131610_T_A_+ AAGACTCCACTCACTC-1 10 13131610 T A + 1 1 T>A T>A +AACAAAGCACGGCACT-1_5_146261113_T_C_+ AACAAAGCACGGCACT-1 5 146261113 T C + 1 1 T>C T>C +AAAGAACCAAATTAGG-1_18_69592942_A_G_+ AAAGAACCAAATTAGG-1 18 69592942 A G + 1 1 A>G A>G +AACAAAGAGCCATTTG-1_17_39847458_A_G_- AACAAAGAGCCATTTG-1 17 39847458 A G - 1 1 A>G T>C +AAAGTCCCACAAATGA-1_15_77993653_T_C_- AAAGTCCCACAAATGA-1 15 77993653 T C - 1 1 T>C A>G +AAACCCACACCGTGGT-1_5_104079223_G_A_- AAACCCACACCGTGGT-1 5 104079223 G A - 1 1 G>A C>T +AAGATAGCAATAACGA-1_11_22943594_A_C_- AAGATAGCAATAACGA-1 11 22943594 A C - 1 1 A>C T>G +AAGACTCAGACTCAAA-1_17_81001459_C_A_+ AAGACTCAGACTCAAA-1 17 81001459 C A + 1 1 C>A C>A +AACGTCATCTGGCTGG-1_3_90213215_G_A_- AACGTCATCTGGCTGG-1 3 90213215 G A - 1 1 G>A C>T +AACCACATCGGAGATG-1_7_134279045_C_A_- AACCACATCGGAGATG-1 7 134279045 C A - 1 1 C>A G>T +AACCCAAAGAATTGTG-1_13_43133027_C_G_+ AACCCAAAGAATTGTG-1 13 43133027 C G + 1 1 C>G C>G +AAAGGGCCAGCGCTTG-1_4_155573060_A_T_+ AAAGGGCCAGCGCTTG-1 4 155573060 A T + 1 1 A>T A>T +AACAACCAGTAATACG-1_18_39207572_C_A_+ AACAACCAGTAATACG-1 18 39207572 C A + 1 1 C>A C>A +AAACCCAGTTTCGTAG-1_17_39848018_C_T_+ AAACCCAGTTTCGTAG-1 17 39848018 C T + 1 1 C>T C>T +AACCAACTCATAGACC-1_16_55966431_A_T_+ AACCAACTCATAGACC-1 16 55966431 A T + 1 1 A>T A>T +AAATGGATCTGCGGCA-1_5_71763544_G_A_+ AAATGGATCTGCGGCA-1 5 71763544 G A + 1 1 G>A G>A +AACGGGAGTTGTGCCG-1_4_126165082_A_T_- AACGGGAGTTGTGCCG-1 4 126165082 A T - 1 1 A>T T>A +AAACGCTCAGTAGGAC-1_10_57516114_G_A_- AAACGCTCAGTAGGAC-1 10 57516114 G A - 1 1 G>A C>T +AACCACAGTTTGATCG-1_X_37085133_G_A_- AACCACAGTTTGATCG-1 X 37085133 G A - 1 1 G>A C>T +AAATGGACACCATATG-1_2_98666800_T_G_- AAATGGACACCATATG-1 2 98666800 T G - 1 1 T>G A>C +AAACGCTTCTCCTGCA-1_X_107397564_T_C_- AAACGCTTCTCCTGCA-1 X 107397564 T C - 1 1 T>C A>G +AACTTCTAGCCTAACT-1_3_101576334_C_G_- AACTTCTAGCCTAACT-1 3 101576334 C G - 1 1 C>G G>C +AAAGAACTCTCACCCA-1_17_39847458_A_G_+ AAAGAACTCTCACCCA-1 17 39847458 A G + 1 1 A>G A>G +AACAAGAAGCAATTAG-1_13_99421650_G_A_- AACAAGAAGCAATTAG-1 13 99421650 G A - 1 1 G>A C>T +AACAAGAGTAGAATGT-1_13_36734384_G_A_- AACAAGAGTAGAATGT-1 13 36734384 G A - 1 1 G>A C>T +AAACGCTCACCTAAAC-1_2_3328644_C_T_+ AAACGCTCACCTAAAC-1 2 3328644 C T + 1 1 C>T C>T +AAAGTCCAGTCGGCCT-1_6_120795467_G_A_- AAAGTCCAGTCGGCCT-1 6 120795467 G A - 1 1 G>A C>T +AAAGTCCTCTGCGATA-1_17_39848018_C_T_+ AAAGTCCTCTGCGATA-1 17 39848018 C T + 1 1 C>T C>T +AACAACCGTATGTCTG-1_9_111278858_T_G_+ AACAACCGTATGTCTG-1 9 111278858 T G + 1 1 T>G T>G +AAACCCAGTGCTCGTG-1_11_69600032_G_T_- AAACCCAGTGCTCGTG-1 11 69600032 G T - 1 1 G>T C>A +AAATGGAAGTCGGCCT-1_17_39848018_C_T_+ AAATGGAAGTCGGCCT-1 17 39848018 C T + 1 1 C>T C>T +AAACCCATCTTAAGGC-1_9_3024472_C_G_- AAACCCATCTTAAGGC-1 9 3024472 C G - 1 1 C>G G>C +AAAGGTACAGGACAGT-1_11_16284482_C_T_+ AAAGGTACAGGACAGT-1 11 16284482 C T + 1 1 C>T C>T +AAACGCTGTTTGACAC-1_9_3024614_C_T_- AAACGCTGTTTGACAC-1 9 3024614 C T - 1 1 C>T G>A +AAACGCTCAGTAGGAC-1_6_83931627_A_G_+ AAACGCTCAGTAGGAC-1 6 83931627 A G + 1 1 A>G A>G +AAGACAAAGAGTTCGG-1_12_44411261_A_C_+ AAGACAAAGAGTTCGG-1 12 44411261 A C + 1 1 A>C A>C +AACCAACGTGCCTAAT-1_12_99645608_T_C_+ AACCAACGTGCCTAAT-1 12 99645608 T C + 1 1 T>C T>C +AAAGGGCTCTGCTAGA-1_11_57309654_A_G_+ AAAGGGCTCTGCTAGA-1 11 57309654 A G + 1 1 A>G A>G +AAAGTGATCTCGGCTT-1_14_49057854_C_T_- AAAGTGATCTCGGCTT-1 14 49057854 C T - 1 1 C>T G>A +AACAAGAGTTCTCAGA-1_17_39847458_A_G_+ AACAAGAGTTCTCAGA-1 17 39847458 A G + 1 1 A>G A>G +AACCAACGTTTCGTGA-1_10_32571529_G_A_- AACCAACGTTTCGTGA-1 10 32571529 G A - 1 1 G>A C>T +AACAAAGCACGGCACT-1_5_146261106_C_G_+ AACAAAGCACGGCACT-1 5 146261106 C G + 1 1 C>G C>G +AAGACAAAGGATACAT-1_7_97718409_T_C_+ AAGACAAAGGATACAT-1 7 97718409 T C + 1 1 T>C T>C +AACGTCACAAAGAGTT-1_4_3834667_G_A_- AACGTCACAAAGAGTT-1 4 3834667 G A - 1 1 G>A C>T +AAAGAACGTGGACTGA-1_16_57391526_G_A_- AAAGAACGTGGACTGA-1 16 57391526 G A - 1 2 G>A C>T +AAACGAAGTCGCGTTG-1_17_39847403_T_G_+ AAACGAAGTCGCGTTG-1 17 39847403 T G + 1 2 T>G T>G +AAGACAACACCGCTGA-1_18_76305139_C_T_+ AAGACAACACCGCTGA-1 18 76305139 C T + 1 1 C>T C>T +AAGAACAGTAACAGGC-1_16_57391683_T_A_- AAGAACAGTAACAGGC-1 16 57391683 T A - 1 1 T>A A>T +AAGACAACATCAACCA-1_3_152861151_T_C_- AAGACAACATCAACCA-1 3 152861151 T C - 1 1 T>C A>G +AACCAACTCGATGGAG-1_X_136838108_T_G_+ AACCAACTCGATGGAG-1 X 136838108 T G + 1 2 T>G T>G +AAGACAAAGGATACAT-1_17_39847162_C_T_- AAGACAAAGGATACAT-1 17 39847162 C T - 1 1 C>T G>A +AAAGTGAGTTCTCCCA-1_1_173862030_C_T_- AAAGTGAGTTCTCCCA-1 1 173862030 C T - 1 1 C>T G>A +AAGAACAGTCGTTGCG-1_11_85465683_T_G_+ AAGAACAGTCGTTGCG-1 11 85465683 T G + 1 1 T>G T>G +AAACCCATCGGATAAA-1_5_130839314_C_T_+ AAACCCATCGGATAAA-1 5 130839314 C T + 1 1 C>T C>T +AACTTCTTCTTCACGC-1_16_17793207_C_G_+ AACTTCTTCTTCACGC-1 16 17793207 C G + 1 1 C>G C>G +AAAGAACCAAATTAGG-1_17_39848018_C_T_+ AAAGAACCAAATTAGG-1 17 39848018 C T + 1 1 C>T C>T +AACCAACAGCTAGAAT-1_7_16945801_G_A_+ AACCAACAGCTAGAAT-1 7 16945801 G A + 1 1 G>A G>A +AACGGGAAGCAGCCCT-1_9_3014151_C_T_- AACGGGAAGCAGCCCT-1 9 3014151 C T - 1 1 C>T G>A +AACCAACCACGGTAGA-1_17_39847426_T_C_+ AACCAACCACGGTAGA-1 17 39847426 T C + 1 1 T>C T>C +AACCATGGTTTCGTGA-1_17_39848018_C_T_+ AACCATGGTTTCGTGA-1 17 39848018 C T + 1 1 C>T C>T +AACCTTTAGGGTATAT-1_5_49307907_T_C_- AACCTTTAGGGTATAT-1 5 49307907 T C - 1 1 T>C A>G +AAGACAACATCAACCA-1_7_139020893_C_T_+ AAGACAACATCAACCA-1 7 139020893 C T + 1 1 C>T C>T +AAACGCTCAGTAGGAC-1_11_29545888_C_A_- AAACGCTCAGTAGGAC-1 11 29545888 C A - 1 1 C>A G>T +AACCATGAGTTGAAAC-1_11_120345808_C_A_- AACCATGAGTTGAAAC-1 11 120345808 C A - 1 1 C>A G>T +AAGAACAAGGTCGAGT-1_16_57391679_G_T_- AAGAACAAGGTCGAGT-1 16 57391679 G T - 1 1 G>T C>A +AAAGAACAGCCTGAAG-1_3_80688261_G_A_- AAAGAACAGCCTGAAG-1 3 80688261 G A - 1 1 G>A C>T +AAAGAACAGTCGCGAA-1_2_98666901_G_A_- AAAGAACAGTCGCGAA-1 2 98666901 G A - 1 1 G>A C>T +AAGACTCCAGGCGAAT-1_17_39847458_A_G_+ AAGACTCCAGGCGAAT-1 17 39847458 A G + 1 1 A>G A>G +AAGACTCAGACTCAAA-1_5_125385984_A_G_- AAGACTCAGACTCAAA-1 5 125385984 A G - 1 1 A>G T>C +AAAGTCCGTCCGTTTC-1_17_39848018_C_T_+ AAAGTCCGTCCGTTTC-1 17 39848018 C T + 1 1 C>T C>T +AAAGGTACACCGTGCA-1_8_66031410_T_G_+ AAAGGTACACCGTGCA-1 8 66031410 T G + 1 1 T>G T>G +AAAGGATCAGACGCTC-1_17_39847607_T_C_+ AAAGGATCAGACGCTC-1 17 39847607 T C + 1 1 T>C T>C +AACGTCACAAGAATGT-1_10_105407519_A_T_- AACGTCACAAGAATGT-1 10 105407519 A T - 1 1 A>T T>A +AACTTCTCAGCGGATA-1_3_33811703_T_A_+ AACTTCTCAGCGGATA-1 3 33811703 T A + 1 1 T>A T>A +AACAAAGTCGTTCGCT-1_9_75637469_C_T_+ AACAAAGTCGTTCGCT-1 9 75637469 C T + 1 1 C>T C>T +AACGTCACAAAGAGTT-1_14_104715799_C_G_+ AACGTCACAAAGAGTT-1 14 104715799 C G + 1 1 C>G C>G +AAATGGAAGTTTCGGT-1_16_43610681_C_T_+ AAATGGAAGTTTCGGT-1 16 43610681 C T + 1 1 C>T C>T +AACGTCAAGACATATG-1_11_109669525_G_A_+ AACGTCAAGACATATG-1 11 109669525 G A + 1 1 G>A G>A +AACAGGGCAAACTCGT-1_9_120574311_G_T_+ AACAGGGCAAACTCGT-1 9 120574311 G T + 1 1 G>T G>T +AACAAAGGTGTAGTGG-1_17_39847403_T_G_+ AACAAAGGTGTAGTGG-1 17 39847403 T G + 1 1 T>G T>G +AACGAAACACACCTGG-1_4_117271621_G_A_- AACGAAACACACCTGG-1 4 117271621 G A - 1 1 G>A C>T +AACCAACAGGCCCACT-1_2_5379370_T_G_- AACCAACAGGCCCACT-1 2 5379370 T G - 1 1 T>G A>C +AACGTCACATGAATCC-1_X_37085133_G_A_- AACGTCACATGAATCC-1 X 37085133 G A - 1 1 G>A C>T +AACGAAACAGCGTATT-1_11_51985623_G_A_- AACGAAACAGCGTATT-1 11 51985623 G A - 1 1 G>A C>T +AACCATGGTCATACCA-1_11_86328168_T_A_- AACCATGGTCATACCA-1 11 86328168 T A - 1 1 T>A A>T +AACCTGAAGCATTGAA-1_17_39848018_C_T_+ AACCTGAAGCATTGAA-1 17 39848018 C T + 2 2 C>T C>T +AACGGGACAGGACAGT-1_11_101063605_T_C_+ AACGGGACAGGACAGT-1 11 101063605 T C + 1 1 T>C T>C +AACCATGGTCTACAAC-1_9_70554626_A_G_+ AACCATGGTCTACAAC-1 9 70554626 A G + 1 1 A>G A>G +AACCATGCAGAGGTTG-1_14_30346843_G_A_- AACCATGCAGAGGTTG-1 14 30346843 G A - 1 1 G>A C>T +AACGTCACACTCCTTG-1_16_40539574_A_G_+ AACGTCACACTCCTTG-1 16 40539574 A G + 1 1 A>G A>G +AACAGGGCAGATTTCG-1_11_119979755_G_A_+ AACAGGGCAGATTTCG-1 11 119979755 G A + 1 1 G>A G>A +AACGGGAAGTTGCCCG-1_3_135408527_G_A_- AACGGGAAGTTGCCCG-1 3 135408527 G A - 1 1 G>A C>T +AACAACCCAAGACGGT-1_8_81591548_T_C_+ AACAACCCAAGACGGT-1 8 81591548 T C + 1 1 T>C T>C +AACCCAATCCCTCATG-1_2_42189630_T_C_- AACCCAATCCCTCATG-1 2 42189630 T C - 1 1 T>C A>G +AAAGTCCTCCGATGCG-1_2_156540585_C_T_+ AAAGTCCTCCGATGCG-1 2 156540585 C T + 1 1 C>T C>T +AAAGAACCAGCAAGAC-1_9_3014310_T_A_- AAAGAACCAGCAAGAC-1 9 3014310 T A - 1 1 T>A A>T +AACCATGGTTTCGTGA-1_9_31210662_A_G_- AACCATGGTTTCGTGA-1 9 31210662 A G - 1 1 A>G T>C +AAACGCTTCGGTTAGT-1_1_135752017_C_T_+ AAACGCTTCGGTTAGT-1 1 135752017 C T + 1 1 C>T C>T +AACAACCAGTTACTCG-1_MT_9217_A_G_+ AACAACCAGTTACTCG-1 MT 9217 A G + 1 1 A>G A>G +AACTTCTCACTAACGT-1_11_75765323_A_C_+ AACTTCTCACTAACGT-1 11 75765323 A C + 1 1 A>C A>C +AAATGGATCGTAGGAG-1_11_76233920_A_G_- AAATGGATCGTAGGAG-1 11 76233920 A G - 1 1 A>G T>C +AACCACATCGTCAGAT-1_18_10133115_G_T_- AACCACATCGTCAGAT-1 18 10133115 G T - 1 1 G>T C>A +AAAGTCCGTCCTCCAT-1_6_119971057_A_G_- AAAGTCCGTCCTCCAT-1 6 119971057 A G - 1 1 A>G T>C +AAAGGGCGTACCCGCA-1_17_39848018_C_T_+ AAAGGGCGTACCCGCA-1 17 39848018 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_19_16387008_C_T_+ AACCACAAGCTTTGTG-1 19 16387008 C T + 1 1 C>T C>T +AAAGTCCAGGAGAGTA-1_2_5379332_A_T_- AAAGTCCAGGAGAGTA-1 2 5379332 A T - 1 1 A>T T>A +AAACGAAGTCTCAGAT-1_9_3000598_G_T_- AAACGAAGTCTCAGAT-1 9 3000598 G T - 1 1 G>T C>A +AAATGGAAGCAGATAT-1_4_117948559_T_C_- AAATGGAAGCAGATAT-1 4 117948559 T C - 1 1 T>C A>G +AAACCCACACCGTGGT-1_2_148871890_G_A_- AAACCCACACCGTGGT-1 2 148871890 G A - 1 2 G>A C>T +AACCTTTTCCTCGCAT-1_X_157845453_A_G_- AACCTTTTCCTCGCAT-1 X 157845453 A G - 1 1 A>G T>C +AACACACGTTAAACAG-1_7_34202306_G_A_- AACACACGTTAAACAG-1 7 34202306 G A - 1 1 G>A C>T +AACAGGGCAAACTCGT-1_X_136838216_C_A_+ AACAGGGCAAACTCGT-1 X 136838216 C A + 1 3 C>A C>A +AAACGCTAGGTTACAA-1_5_92054709_G_A_- AAACGCTAGGTTACAA-1 5 92054709 G A - 1 1 G>A C>T +AACGGGAAGTTGCCCG-1_17_87433568_G_A_- AACGGGAAGTTGCCCG-1 17 87433568 G A - 1 1 G>A C>T +AAACCCAGTCGTCTCT-1_9_64177757_C_T_+ AAACCCAGTCGTCTCT-1 9 64177757 C T + 1 1 C>T C>T +AAACGAAGTTCATCTT-1_6_148141244_T_G_+ AAACGAAGTTCATCTT-1 6 148141244 T G + 1 1 T>G T>G +AACACACCATCGTCCT-1_4_137321899_G_A_- AACACACCATCGTCCT-1 4 137321899 G A - 1 1 G>A C>T +AACCATGTCCAATCTT-1_12_31331635_G_A_- AACCATGTCCAATCTT-1 12 31331635 G A - 1 1 G>A C>T +AAATGGACACATACTG-1_6_120888741_C_T_+ AAATGGACACATACTG-1 6 120888741 C T + 1 1 C>T C>T +AACGAAATCCTGTAAG-1_11_36677867_A_T_- AACGAAATCCTGTAAG-1 11 36677867 A T - 1 1 A>T T>A +AAAGGTAAGACTTCAC-1_3_136936089_C_T_+ AAAGGTAAGACTTCAC-1 3 136936089 C T + 1 1 C>T C>T +AACAAAGCACGGCACT-1_10_60302472_G_C_+ AACAAAGCACGGCACT-1 10 60302472 G C + 1 1 G>C G>C +AACAAGACATCCGTTC-1_18_60554331_T_G_+ AACAAGACATCCGTTC-1 18 60554331 T G + 1 1 T>G T>G +AAAGGGCCAGCGCTTG-1_4_41191274_A_C_+ AAAGGGCCAGCGCTTG-1 4 41191274 A C + 1 1 A>C A>C +AACCAACAGCTACTGT-1_1_135160506_A_G_- AACCAACAGCTACTGT-1 1 135160506 A G - 1 1 A>G T>C +AACGTCATCTGGCTGG-1_2_121437802_C_T_+ AACGTCATCTGGCTGG-1 2 121437802 C T + 1 1 C>T C>T +AAATGGAGTAGCGCCT-1_5_146261113_T_C_+ AAATGGAGTAGCGCCT-1 5 146261113 T C + 1 1 T>C T>C +AACCAACCAGTCGCTG-1_5_76999757_C_T_+ AACCAACCAGTCGCTG-1 5 76999757 C T + 1 1 C>T C>T +AAACGAAAGCGAACTG-1_8_94674317_C_T_+ AAACGAAAGCGAACTG-1 8 94674317 C T + 1 1 C>T C>T +AACCTTTTCACAGAGG-1_4_86854832_G_A_- AACCTTTTCACAGAGG-1 4 86854832 G A - 1 1 G>A C>T +AAAGGGCAGACTACCT-1_16_57391680_C_T_- AAAGGGCAGACTACCT-1 16 57391680 C T - 1 1 C>T G>A +AACTTCTCAGCGGATA-1_3_33811700_C_G_+ AACTTCTCAGCGGATA-1 3 33811700 C G + 1 1 C>G C>G +AACTTCTCAGGACTTT-1_3_153687336_G_T_- AACTTCTCAGGACTTT-1 3 153687336 G T - 1 1 G>T C>A +AAGAACAGTAAGATAC-1_1_164437244_T_C_- AAGAACAGTAAGATAC-1 1 164437244 T C - 1 1 T>C A>G +AAGACTCTCGGAGATG-1_11_52246134_C_T_+ AAGACTCTCGGAGATG-1 11 52246134 C T + 1 1 C>T C>T +AAACCCATCGGATAAA-1_MT_6694_T_A_+ AAACCCATCGGATAAA-1 MT 6694 T A + 1 1 T>A T>A +AAAGTGAGTCAAGGCA-1_11_120962055_G_A_- AAAGTGAGTCAAGGCA-1 11 120962055 G A - 1 1 G>A C>T +AAGATAGCACGCGTGT-1_7_126795450_T_C_- AAGATAGCACGCGTGT-1 7 126795450 T C - 1 1 T>C A>G +AAAGGGCCACACTTAG-1_9_57023874_C_A_+ AAAGGGCCACACTTAG-1 9 57023874 C A + 1 1 C>A C>A +AAAGTCCGTGACTGTT-1_7_4794500_G_A_+ AAAGTCCGTGACTGTT-1 7 4794500 G A + 1 1 G>A G>A +AACAGGGCAATAAGGT-1_9_20643522_T_C_+ AACAGGGCAATAAGGT-1 9 20643522 T C + 1 1 T>C T>C +AACAAAGTCACGATAC-1_17_8899719_T_C_+ AACAAAGTCACGATAC-1 17 8899719 T C + 1 1 T>C T>C +AACAAAGAGCCATTTG-1_17_39847435_A_G_- AACAAAGAGCCATTTG-1 17 39847435 A G - 1 1 A>G T>C +AAAGTCCCATAACGGG-1_17_39848018_C_T_+ AAAGTCCCATAACGGG-1 17 39848018 C T + 1 1 C>T C>T +AAACGCTGTGGACAGT-1_2_158375837_T_A_+ AAACGCTGTGGACAGT-1 2 158375837 T A + 1 1 T>A T>A +AACTTCTAGGGCTAAC-1_15_79823943_C_G_- AACTTCTAGGGCTAAC-1 15 79823943 C G - 1 1 C>G G>C +AAAGTCCAGTCGGCCT-1_3_117319201_G_A_- AAAGTCCAGTCGGCCT-1 3 117319201 G A - 1 1 G>A C>T +AACTTCTAGATACGAT-1_12_32976531_T_A_+ AACTTCTAGATACGAT-1 12 32976531 T A + 1 1 T>A T>A +AACCCAAGTATCGATC-1_9_41014261_G_A_- AACCCAAGTATCGATC-1 9 41014261 G A - 1 1 G>A C>T +AAGACTCTCGAGTACT-1_13_106982210_A_T_- AAGACTCTCGAGTACT-1 13 106982210 A T - 1 1 A>T T>A +AAACGAAAGGCTTTCA-1_1_158691606_C_T_+ AAACGAAAGGCTTTCA-1 1 158691606 C T + 1 1 C>T C>T +AAATGGAAGCAGATAT-1_11_59407400_G_A_- AAATGGAAGCAGATAT-1 11 59407400 G A - 1 1 G>A C>T +AACGAAAAGCTAAACA-1_2_174462572_C_G_- AACGAAAAGCTAAACA-1 2 174462572 C G - 1 1 C>G G>C +AAACCCACATTCACAG-1_17_39847495_T_C_+ AAACCCACATTCACAG-1 17 39847495 T C + 1 1 T>C T>C +AAAGAACCAGCTCCTT-1_2_75665988_C_T_+ AAAGAACCAGCTCCTT-1 2 75665988 C T + 1 1 C>T C>T +AAACGAAAGACAACAT-1_15_66614709_G_A_+ AAACGAAAGACAACAT-1 15 66614709 G A + 1 1 G>A G>A +AAACCCACAGCAGTCC-1_8_117260679_C_T_+ AAACCCACAGCAGTCC-1 8 117260679 C T + 1 1 C>T C>T +AACGGGAAGTTGCCCG-1_16_84954562_G_A_- AACGGGAAGTTGCCCG-1 16 84954562 G A - 1 1 G>A C>T +AACAAGATCATCCTGC-1_MT_8390_C_T_+ AACAAGATCATCCTGC-1 MT 8390 C T + 1 1 C>T C>T +AAAGGTACATGTGTCA-1_17_39847403_T_G_+ AAAGGTACATGTGTCA-1 17 39847403 T G + 1 1 T>G T>G +AAACGCTCAGTAGGAC-1_11_96860933_T_A_+ AAACGCTCAGTAGGAC-1 11 96860933 T A + 1 1 T>A T>A +AAAGTCCAGTCGGCCT-1_12_76631075_T_C_- AAAGTCCAGTCGGCCT-1 12 76631075 T C - 1 1 T>C A>G +AAGATAGAGGGTACGT-1_9_3025577_C_A_- AAGATAGAGGGTACGT-1 9 3025577 C A - 1 1 C>A G>T +AAGACTCGTTGCTCGG-1_15_100038874_C_G_+ AAGACTCGTTGCTCGG-1 15 100038874 C G + 1 1 C>G C>G +AACGGGACATGGGCAA-1_9_3000570_T_C_- AACGGGACATGGGCAA-1 9 3000570 T C - 1 1 T>C A>G +AAACGCTGTCAATGGG-1_19_46330184_T_C_+ AAACGCTGTCAATGGG-1 19 46330184 T C + 1 1 T>C T>C +AAAGGATAGATGAAGG-1_2_5293724_T_A_- AAAGGATAGATGAAGG-1 2 5293724 T A - 1 1 T>A A>T +AAGAACAAGGTCGAGT-1_16_57391683_T_A_- AAGAACAAGGTCGAGT-1 16 57391683 T A - 1 1 T>A A>T +AAATGGAAGCAGATAT-1_4_117948571_T_C_- AAATGGAAGCAGATAT-1 4 117948571 T C - 1 1 T>C A>G +AAAGGTAGTATGCTAC-1_14_62693212_A_G_- AAAGGTAGTATGCTAC-1 14 62693212 A G - 1 1 A>G T>C +AAGACAAGTCGAATTC-1_9_37545111_G_A_- AAGACAAGTCGAATTC-1 9 37545111 G A - 1 2 G>A C>T +AAGACAATCGATTGGT-1_2_92383738_C_T_- AAGACAATCGATTGGT-1 2 92383738 C T - 1 1 C>T G>A +AAACCCATCGGATAAA-1_4_156247285_G_A_+ AAACCCATCGGATAAA-1 4 156247285 G A + 1 1 G>A G>A +AAACGAATCACTTCTA-1_19_7215279_T_C_- AAACGAATCACTTCTA-1 19 7215279 T C - 1 1 T>C A>G +AAGACTCAGTGAATAC-1_12_61583925_A_G_+ AAGACTCAGTGAATAC-1 12 61583925 A G + 1 1 A>G A>G +AACAACCAGTTACTCG-1_17_39848018_C_T_+ AACAACCAGTTACTCG-1 17 39848018 C T + 1 1 C>T C>T +AAACGCTGTCAACACT-1_13_108048790_A_C_+ AAACGCTGTCAACACT-1 13 108048790 A C + 1 1 A>C A>C +AAAGTCCAGTCGGCCT-1_2_174346720_C_T_+ AAAGTCCAGTCGGCCT-1 2 174346720 C T + 1 1 C>T C>T +AAGACTCTCCATAGAC-1_17_39847435_A_G_- AAGACTCTCCATAGAC-1 17 39847435 A G - 1 1 A>G T>C +AAGATAGCACGCGTGT-1_2_75661516_T_G_+ AAGATAGCACGCGTGT-1 2 75661516 T G + 1 1 T>G T>G +AACTTCTGTCTCGACG-1_6_77380125_T_C_- AACTTCTGTCTCGACG-1 6 77380125 T C - 1 1 T>C A>G +AACACACAGGATCACG-1_11_86584827_T_G_- AACACACAGGATCACG-1 11 86584827 T G - 1 1 T>G A>C +AAATGGAGTACCGGAA-1_5_38060533_C_T_+ AAATGGAGTACCGGAA-1 5 38060533 C T + 1 1 C>T C>T +AAACCCACAATCTCTT-1_7_118688688_G_A_- AAACCCACAATCTCTT-1 7 118688688 G A - 1 1 G>A C>T +AAGATAGCAATAACGA-1_9_61913405_T_C_- AAGATAGCAATAACGA-1 9 61913405 T C - 1 1 T>C A>G +AAATGGACACGGAAGT-1_7_47006834_C_A_- AAATGGACACGGAAGT-1 7 47006834 C A - 1 1 C>A G>T +AAAGGATAGTTCCGGC-1_3_59216844_G_A_- AAAGGATAGTTCCGGC-1 3 59216844 G A - 1 1 G>A C>T +AACCATGTCCTCTCGA-1_2_131030321_T_G_+ AACCATGTCCTCTCGA-1 2 131030321 T G + 1 1 T>G T>G +AAAGTCCCAGAGGACT-1_5_33027672_C_T_+ AAAGTCCCAGAGGACT-1 5 33027672 C T + 1 1 C>T C>T +AAAGGATAGTTTCAGC-1_17_39847132_C_T_+ AAAGGATAGTTTCAGC-1 17 39847132 C T + 1 1 C>T C>T +AAGAACAGTTTCGCTC-1_5_129023167_C_A_+ AAGAACAGTTTCGCTC-1 5 129023167 C A + 1 1 C>A C>A +AAGACTCGTGGTACAG-1_15_80078379_G_A_- AAGACTCGTGGTACAG-1 15 80078379 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_14_18268103_G_A_- AAACGCTCAGTAGGAC-1 14 18268103 G A - 1 1 G>A C>T +AAAGAACAGTCGCGAA-1_11_37139263_T_C_- AAAGAACAGTCGCGAA-1 11 37139263 T C - 1 1 T>C A>G +AAAGTGAAGCCATATC-1_MT_9196_T_C_+ AAAGTGAAGCCATATC-1 MT 9196 T C + 1 1 T>C T>C +AACAAAGAGGTGCGAT-1_5_112419338_T_A_- AACAAAGAGGTGCGAT-1 5 112419338 T A - 1 1 T>A A>T +AACACACTCGCCTAGG-1_9_3014151_C_T_- AACACACTCGCCTAGG-1 9 3014151 C T - 1 1 C>T G>A +AACAAAGGTAGGGTAC-1_17_39847403_T_G_+ AACAAAGGTAGGGTAC-1 17 39847403 T G + 1 1 T>G T>G +AAAGGGCAGGACATCG-1_10_94563928_C_T_+ AAAGGGCAGGACATCG-1 10 94563928 C T + 1 1 C>T C>T +AACTTCTTCTTCACGC-1_7_57432293_G_A_- AACTTCTTCTTCACGC-1 7 57432293 G A - 1 1 G>A C>T +AAAGTCCGTGACTGTT-1_12_99645645_A_G_+ AAAGTCCGTGACTGTT-1 12 99645645 A G + 1 1 A>G A>G +AACCACAGTCTACAAC-1_16_35981746_C_A_- AACCACAGTCTACAAC-1 16 35981746 C A - 1 1 C>A G>T +AAAGTCCCATGTGGCC-1_X_133671186_A_T_- AAAGTCCCATGTGGCC-1 X 133671186 A T - 1 1 A>T T>A +AACTTCTCAGGACTTT-1_17_39847403_T_G_+ AACTTCTCAGGACTTT-1 17 39847403 T G + 1 1 T>G T>G +AACCATGCAGAGTTCT-1_16_57391688_T_G_- AACCATGCAGAGTTCT-1 16 57391688 T G - 1 1 T>G A>C +AACAACCAGGAGTATT-1_9_35305409_G_A_- AACAACCAGGAGTATT-1 9 35305409 G A - 1 1 G>A C>T +AACACACAGGTAAGTT-1_2_32379168_G_T_- AACACACAGGTAAGTT-1 2 32379168 G T - 1 1 G>T C>A +AACAAAGTCTGAGAAA-1_X_95940819_G_T_- AACAAAGTCTGAGAAA-1 X 95940819 G T - 1 1 G>T C>A +AACCACAGTCCAGAAG-1_13_29984256_A_C_- AACCACAGTCCAGAAG-1 13 29984256 A C - 1 1 A>C T>G +AAATGGAAGCAGATAT-1_4_138457000_T_A_+ AAATGGAAGCAGATAT-1 4 138457000 T A + 1 1 T>A T>A +AACACACCAGACCAGA-1_15_99934310_C_T_+ AACACACCAGACCAGA-1 15 99934310 C T + 1 1 C>T C>T +AAAGGTATCCGGTAGC-1_17_39847337_G_A_+ AAAGGTATCCGGTAGC-1 17 39847337 G A + 1 1 G>A G>A +AACCACACAATAGTAG-1_12_11325427_G_A_- AACCACACAATAGTAG-1 12 11325427 G A - 1 1 G>A C>T +AACCTTTCATTGAAAG-1_16_38449820_C_T_- AACCTTTCATTGAAAG-1 16 38449820 C T - 1 1 C>T G>A +AACAACCAGTAATACG-1_5_137731288_A_G_- AACAACCAGTAATACG-1 5 137731288 A G - 1 1 A>G T>C +AAAGGTACAAATGATG-1_MT_4130_G_A_+ AAAGGTACAAATGATG-1 MT 4130 G A + 1 1 G>A G>A +AAACCCAAGATTGCGG-1_14_54887977_C_T_+ AAACCCAAGATTGCGG-1 14 54887977 C T + 1 1 C>T C>T +AACAAGACATTCGATG-1_17_39847458_A_G_- AACAAGACATTCGATG-1 17 39847458 A G - 1 1 A>G T>C +AAAGTGAAGCCATATC-1_7_90169429_A_G_+ AAAGTGAAGCCATATC-1 7 90169429 A G + 1 1 A>G A>G +AAGACAAAGAGTTCGG-1_16_43619129_G_A_+ AAGACAAAGAGTTCGG-1 16 43619129 G A + 1 1 G>A G>A +AAATGGAGTGTGTACT-1_16_84831334_C_G_- AAATGGAGTGTGTACT-1 16 84831334 C G - 1 1 C>G G>C +AACCTGACATCGTCCT-1_8_73307541_A_T_- AACCTGACATCGTCCT-1 8 73307541 A T - 1 1 A>T T>A +AACCAACTCGATGGAG-1_10_80403049_G_A_- AACCAACTCGATGGAG-1 10 80403049 G A - 1 1 G>A C>T +AAATGGAAGGGTACAC-1_17_39848018_C_T_+ AAATGGAAGGGTACAC-1 17 39848018 C T + 1 1 C>T C>T +AAAGTCCAGTCGGCCT-1_3_58557347_C_T_+ AAAGTCCAGTCGGCCT-1 3 58557347 C T + 1 1 C>T C>T +AAAGTCCAGTCTGGTT-1_19_38636767_T_C_+ AAAGTCCAGTCTGGTT-1 19 38636767 T C + 1 1 T>C T>C +AACGTCACAACCAGAG-1_9_59679149_C_A_+ AACGTCACAACCAGAG-1 9 59679149 C A + 1 1 C>A C>A +AAGACTCTCGAGTACT-1_6_86675268_G_A_- AAGACTCTCGAGTACT-1 6 86675268 G A - 1 1 G>A C>T +AAGACAAAGAGTTCGG-1_17_39847328_T_G_- AAGACAAAGAGTTCGG-1 17 39847328 T G - 1 1 T>G A>C +AACCATGAGTTCCGTA-1_11_98116094_A_G_- AACCATGAGTTCCGTA-1 11 98116094 A G - 1 1 A>G T>C +AACCCAAAGATTGTGA-1_17_39847403_T_G_+ AACCCAAAGATTGTGA-1 17 39847403 T G + 1 1 T>G T>G +AAATGGACACCCGTAG-1_19_32515139_G_A_+ AAATGGACACCCGTAG-1 19 32515139 G A + 1 1 G>A G>A +AACTTCTAGATACGAT-1_12_32976540_C_G_+ AACTTCTAGATACGAT-1 12 32976540 C G + 1 1 C>G C>G +AACGTCAAGACTCTTG-1_2_102300256_G_A_- AACGTCAAGACTCTTG-1 2 102300256 G A - 1 1 G>A C>T +AACCAACTCGCCCAGA-1_9_30465490_C_T_+ AACCAACTCGCCCAGA-1 9 30465490 C T + 1 1 C>T C>T +AAGACTCTCACAAGAA-1_5_146261004_G_C_+ AAGACTCTCACAAGAA-1 5 146261004 G C + 1 1 G>C G>C +AACCAACGTCACCCTT-1_8_69895296_A_G_- AACCAACGTCACCCTT-1 8 69895296 A G - 1 1 A>G T>C +AACGTCACAAGAATGT-1_7_123193746_A_T_+ AACGTCACAAGAATGT-1 7 123193746 A T + 1 1 A>T A>T +AACAACCGTATGTCTG-1_16_17651311_G_A_- AACAACCGTATGTCTG-1 16 17651311 G A - 1 1 G>A C>T +AAAGTCCAGTCGGCCT-1_10_80294026_C_T_+ AAAGTCCAGTCGGCCT-1 10 80294026 C T + 1 1 C>T C>T +AAACGAAGTGATGTAA-1_11_44617526_T_G_+ AAACGAAGTGATGTAA-1 11 44617526 T G + 1 1 T>G T>G +AACCAACTCGATGGAG-1_17_25888667_A_G_- AACCAACTCGATGGAG-1 17 25888667 A G - 1 1 A>G T>C +AACCACAAGACTTGTC-1_14_73362696_A_C_- AACCACAAGACTTGTC-1 14 73362696 A C - 1 1 A>C T>G +AAGACAAGTCGAATTC-1_3_57842275_G_A_- AAGACAAGTCGAATTC-1 3 57842275 G A - 1 2 G>A C>T +AAGAACAGTAACAGGC-1_16_57391680_C_T_- AAGAACAGTAACAGGC-1 16 57391680 C T - 1 1 C>T G>A +AACGGGAAGTTGCCCG-1_10_88178217_C_T_+ AACGGGAAGTTGCCCG-1 10 88178217 C T + 1 1 C>T C>T +AACGAAATCTTGAACG-1_9_75573845_T_C_- AACGAAATCTTGAACG-1 9 75573845 T C - 1 1 T>C A>G +AAGAACACATACTGTG-1_16_33057504_C_T_+ AAGAACACATACTGTG-1 16 33057504 C T + 1 1 C>T C>T +AAACGCTCAGTAGGAC-1_11_6419684_C_T_+ AAACGCTCAGTAGGAC-1 11 6419684 C T + 1 1 C>T C>T +AAACGCTCATCAACCA-1_1_126375326_C_A_- AAACGCTCATCAACCA-1 1 126375326 C A - 1 1 C>A G>T +AAGAACACAAAGGTTA-1_12_44562924_T_C_+ AAGAACACAAAGGTTA-1 12 44562924 T C + 1 1 T>C T>C +AAATGGACATGCCGAC-1_11_51685533_C_T_- AAATGGACATGCCGAC-1 11 51685533 C T - 1 1 C>T G>A +AACCTTTCATTGAAAG-1_12_85044428_C_T_+ AACCTTTCATTGAAAG-1 12 85044428 C T + 1 1 C>T C>T +AAACCCAAGGTAGACC-1_16_57391677_C_G_- AAACCCAAGGTAGACC-1 16 57391677 C G - 1 1 C>G G>C +AACACACAGTGCACAG-1_9_70554648_T_C_+ AACACACAGTGCACAG-1 9 70554648 T C + 1 1 T>C T>C +AACAAAGTCGTCGGGT-1_5_121205431_C_T_+ AACAAAGTCGTCGGGT-1 5 121205431 C T + 1 1 C>T C>T +AACCTTTCACACCTGG-1_4_138457018_T_A_+ AACCTTTCACACCTGG-1 4 138457018 T A + 1 1 T>A T>A +AACCAACCAGATCCAT-1_X_167766022_T_C_- AACCAACCAGATCCAT-1 X 167766022 T C - 1 1 T>C A>G +AACTTCTTCTTCACGC-1_9_58651893_C_T_+ AACTTCTTCTTCACGC-1 9 58651893 C T + 1 1 C>T C>T +AAATGGAGTACCGGAA-1_10_68093044_C_T_- AAATGGAGTACCGGAA-1 10 68093044 C T - 1 1 C>T G>A +AACAGGGAGGTGCTGA-1_10_108831118_G_A_- AACAGGGAGGTGCTGA-1 10 108831118 G A - 1 1 G>A C>T +AAACCCACAATCTCTT-1_18_82585561_C_T_+ AAACCCACAATCTCTT-1 18 82585561 C T + 1 1 C>T C>T +AAGACAAAGTAATACG-1_19_24294906_C_T_- AAGACAAAGTAATACG-1 19 24294906 C T - 1 1 C>T G>A +AAAGTCCAGTCGGCCT-1_7_100326940_A_G_- AAAGTCCAGTCGGCCT-1 7 100326940 A G - 1 1 A>G T>C +AACTTCTCAGGACTTT-1_3_108821958_A_G_- AACTTCTCAGGACTTT-1 3 108821958 A G - 1 1 A>G T>C +AACACACTCTGCGGAC-1_15_103531456_A_G_- AACACACTCTGCGGAC-1 15 103531456 A G - 1 1 A>G T>C +AAAGAACAGCGTATAA-1_8_64592622_A_G_- AAAGAACAGCGTATAA-1 8 64592622 A G - 1 1 A>G T>C +AACGTCACACTCCTTG-1_2_73908643_T_A_- AACGTCACACTCCTTG-1 2 73908643 T A - 1 1 T>A A>T +AACCAACGTCCCTGTT-1_10_121993941_A_T_- AACCAACGTCCCTGTT-1 10 121993941 A T - 1 1 A>T T>A +AAACGCTGTCAACACT-1_10_128912277_C_T_+ AAACGCTGTCAACACT-1 10 128912277 C T + 1 1 C>T C>T +AACAACCCACACACGC-1_5_71085400_A_C_- AACAACCCACACACGC-1 5 71085400 A C - 1 1 A>C T>G +AAACCCAAGATTGCGG-1_15_5117414_A_T_+ AAACCCAAGATTGCGG-1 15 5117414 A T + 1 1 A>T A>T +AACCAACTCGATGGAG-1_14_44614133_G_A_- AACCAACTCGATGGAG-1 14 44614133 G A - 1 1 G>A C>T +AACGTCAAGCTAAACA-1_1_75247220_A_G_- AACGTCAAGCTAAACA-1 1 75247220 A G - 1 1 A>G T>C +AACTTCTCACTAACGT-1_19_5802657_G_T_- AACTTCTCACTAACGT-1 19 5802657 G T - 1 6 G>T C>A +AAAGGTACATGTGTCA-1_17_39846199_T_C_+ AAAGGTACATGTGTCA-1 17 39846199 T C + 1 1 T>C T>C +AAACGCTTCGGTTAGT-1_17_6236477_G_T_+ AAACGCTTCGGTTAGT-1 17 6236477 G T + 1 1 G>T G>T +AACGGGAAGTTGCCCG-1_1_75482926_C_T_+ AACGGGAAGTTGCCCG-1 1 75482926 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_14_18269158_G_A_- AACCACAAGCTTTGTG-1 14 18269158 G A - 1 1 G>A C>T +AAACCCACAAAGACGC-1_17_29100519_T_G_+ AAACCCACAAAGACGC-1 17 29100519 T G + 1 1 T>G T>G +AAACCCACAGATTAAG-1_9_102907371_G_T_+ AAACCCACAGATTAAG-1 9 102907371 G T + 1 1 G>T G>T +AACCTGATCGGATACT-1_14_27359267_T_G_+ AACCTGATCGGATACT-1 14 27359267 T G + 1 1 T>G T>G +AAAGAACTCGTGGGAA-1_8_94179847_C_G_+ AAAGAACTCGTGGGAA-1 8 94179847 C G + 1 1 C>G C>G +AACAAGAAGCAATTAG-1_6_135713319_A_C_- AACAAGAAGCAATTAG-1 6 135713319 A C - 1 1 A>C T>G +AAGACAAAGAGTTCGG-1_5_58021095_A_G_+ AAGACAAAGAGTTCGG-1 5 58021095 A G + 1 1 A>G A>G +AAGACTCGTGGTACAG-1_11_120001205_C_A_+ AAGACTCGTGGTACAG-1 11 120001205 C A + 1 1 C>A C>A +AACCTTTAGGGCTAAC-1_12_4713697_C_T_+ AACCTTTAGGGCTAAC-1 12 4713697 C T + 1 1 C>T C>T +AACCTTTAGACCAGAC-1_1_55573831_A_G_+ AACCTTTAGACCAGAC-1 1 55573831 A G + 1 1 A>G A>G +AACCTGACAGCTGTCG-1_6_116061102_T_A_- AACCTGACAGCTGTCG-1 6 116061102 T A - 1 1 T>A A>T +AACCTGATCTTCGTGC-1_8_8690151_G_C_- AACCTGATCTTCGTGC-1 8 8690151 G C - 1 1 G>C C>G +AAGATAGCAATAACGA-1_16_29608879_T_G_+ AAGATAGCAATAACGA-1 16 29608879 T G + 1 1 T>G T>G +AACCACATCCTAGCTC-1_16_84954720_A_G_- AACCACATCCTAGCTC-1 16 84954720 A G - 1 1 A>G T>C +AACGAAATCCATGATG-1_6_84987325_T_A_- AACGAAATCCATGATG-1 6 84987325 T A - 1 1 T>A A>T +AACCACAAGACTTGTC-1_17_24721193_A_G_+ AACCACAAGACTTGTC-1 17 24721193 A G + 1 1 A>G A>G +AAACGAAAGGTAGTCG-1_9_34501400_T_C_+ AAACGAAAGGTAGTCG-1 9 34501400 T C + 1 1 T>C T>C +AACCATGAGAGGGTCT-1_16_52416436_C_T_- AACCATGAGAGGGTCT-1 16 52416436 C T - 1 1 C>T G>A +AAACCCAAGATTGCGG-1_18_60995446_G_T_- AAACCCAAGATTGCGG-1 18 60995446 G T - 1 1 G>T C>A +AAATGGACACCCGTAG-1_10_97743985_T_C_- AAATGGACACCCGTAG-1 10 97743985 T C - 1 1 T>C A>G +AACAGGGCAAACTCGT-1_2_118290839_T_C_- AACAGGGCAAACTCGT-1 2 118290839 T C - 1 1 T>C A>G +AACCACAAGCTTTGTG-1_19_16386991_C_T_+ AACCACAAGCTTTGTG-1 19 16386991 C T + 1 1 C>T C>T +AAAGAACTCCCAGGCA-1_17_39847403_T_G_- AAAGAACTCCCAGGCA-1 17 39847403 T G - 1 1 T>G A>C +AAACGCTGTCATGGCC-1_5_49345680_A_G_- AAACGCTGTCATGGCC-1 5 49345680 A G - 1 1 A>G T>C +AACGTCAAGCGAGGAG-1_9_114764808_A_T_- AACGTCAAGCGAGGAG-1 9 114764808 A T - 1 1 A>T T>A +AAAGGATGTGCTCGTG-1_11_69652969_T_A_+ AAAGGATGTGCTCGTG-1 11 69652969 T A + 1 1 T>A T>A +AACCCAAGTCGAGTGA-1_8_94180235_C_T_+ AACCCAAGTCGAGTGA-1 8 94180235 C T + 1 1 C>T C>T +AAAGTCCAGTGGGAAA-1_1_105755142_C_T_+ AAAGTCCAGTGGGAAA-1 1 105755142 C T + 1 1 C>T C>T +AACGGGAGTGGCAACA-1_9_3000527_T_C_- AACGGGAGTGGCAACA-1 9 3000527 T C - 1 1 T>C A>G +AAACCCAAGTTTAGGA-1_11_112785402_C_T_+ AAACCCAAGTTTAGGA-1 11 112785402 C T + 1 1 C>T C>T +AAACGAAAGCGAACTG-1_11_75705811_C_T_+ AAACGAAAGCGAACTG-1 11 75705811 C T + 1 1 C>T C>T +AACACACTCTGCGGGT-1_7_78302780_A_G_- AACACACTCTGCGGGT-1 7 78302780 A G - 1 1 A>G T>C +AAATGGAAGTTTCGGT-1_16_42181414_C_T_+ AAATGGAAGTTTCGGT-1 16 42181414 C T + 1 1 C>T C>T +AACCTGATCGGATACT-1_11_6419602_C_T_+ AACCTGATCGGATACT-1 11 6419602 C T + 1 1 C>T C>T +AACGTCAAGCGAGGAG-1_9_70554624_T_G_+ AACGTCAAGCGAGGAG-1 9 70554624 T G + 1 1 T>G T>G +AAAGGTAGTGCACGCT-1_17_39847403_T_G_- AAAGGTAGTGCACGCT-1 17 39847403 T G - 1 1 T>G A>C +AACAAGAAGTAAACTG-1_1_156366481_T_A_+ AACAAGAAGTAAACTG-1 1 156366481 T A + 1 1 T>A T>A +AACACACCAAGGTACG-1_17_20965647_G_C_+ AACACACCAAGGTACG-1 17 20965647 G C + 1 1 G>C G>C +AAAGGGCCAACACAGG-1_3_95884151_C_T_- AAAGGGCCAACACAGG-1 3 95884151 C T - 1 1 C>T G>A +AACTTCTCATGAATAG-1_8_50003517_C_T_- AACTTCTCATGAATAG-1 8 50003517 C T - 1 1 C>T G>A +AAAGGTAGTATGTGTC-1_2_5379370_T_G_- AAAGGTAGTATGTGTC-1 2 5379370 T G - 1 1 T>G A>C +AAAGGTACAAATTAGG-1_11_114668797_C_T_+ AAAGGTACAAATTAGG-1 11 114668797 C T + 1 1 C>T C>T +AAGAACACACAAGCCC-1_19_5802168_T_C_- AAGAACACACAAGCCC-1 19 5802168 T C - 1 1 T>C A>G +AACAAAGCACGGCACT-1_12_37382232_G_A_+ AACAAAGCACGGCACT-1 12 37382232 G A + 1 1 G>A G>A +AACGTCATCTGGCTGG-1_19_10206438_G_A_+ AACGTCATCTGGCTGG-1 19 10206438 G A + 1 1 G>A G>A +AACCAACTCAGTGGGA-1_4_102972009_A_T_+ AACCAACTCAGTGGGA-1 4 102972009 A T + 1 1 A>T A>T +AAACCCACACACCTGG-1_11_120345795_G_A_- AAACCCACACACCTGG-1 11 120345795 G A - 1 1 G>A C>T +AAGAACATCATAGGCT-1_6_143208406_C_T_+ AAGAACATCATAGGCT-1 6 143208406 C T + 1 1 C>T C>T +AACAACCAGTAATACG-1_9_110231540_T_C_+ AACAACCAGTAATACG-1 9 110231540 T C + 1 1 T>C T>C +AAAGGTACACCGTGCA-1_9_3000597_T_A_- AAAGGTACACCGTGCA-1 9 3000597 T A - 1 1 T>A A>T +AACAGGGTCGACGCTG-1_17_39847403_T_G_- AACAGGGTCGACGCTG-1 17 39847403 T G - 1 1 T>G A>C +AACAAGACAACAGCTT-1_6_6578511_T_C_- AACAAGACAACAGCTT-1 6 6578511 T C - 1 1 T>C A>G +AAAGAACCACTCCGAG-1_2_30072314_G_A_+ AAAGAACCACTCCGAG-1 2 30072314 G A + 1 1 G>A G>A +AACTTCTCACTAACGT-1_11_75765335_T_G_+ AACTTCTCACTAACGT-1 11 75765335 T G + 1 1 T>G T>G +AACACACAGGATCACG-1_4_149179838_T_C_- AACACACAGGATCACG-1 4 149179838 T C - 1 1 T>C A>G +AAACGAATCGTAGGAG-1_17_39848018_C_T_+ AAACGAATCGTAGGAG-1 17 39848018 C T + 1 1 C>T C>T +AACCACACACAAATGA-1_3_90213038_T_G_- AACCACACACAAATGA-1 3 90213038 T G - 1 1 T>G A>C +AACTTCTAGCAGATAT-1_8_32645381_C_T_- AACTTCTAGCAGATAT-1 8 32645381 C T - 1 1 C>T G>A +AAACGCTGTGGACAGT-1_2_158375845_T_C_+ AAACGCTGTGGACAGT-1 2 158375845 T C + 1 1 T>C T>C +AACAAAGCACGGCACT-1_9_96471181_A_G_- AACAAAGCACGGCACT-1 9 96471181 A G - 1 1 A>G T>C +AAGACAAGTCGAATTC-1_15_34441263_G_A_- AAGACAAGTCGAATTC-1 15 34441263 G A - 1 2 G>A C>T +AAGACAAAGGGCAGGA-1_9_3000479_T_A_- AAGACAAAGGGCAGGA-1 9 3000479 T A - 1 1 T>A A>T +AACAACCCATTAAAGG-1_11_77717813_C_T_+ AACAACCCATTAAAGG-1 11 77717813 C T + 1 1 C>T C>T +AACACACTCTGCGGAC-1_8_94654223_T_C_+ AACACACTCTGCGGAC-1 8 94654223 T C + 1 1 T>C T>C +AAAGGGCCACCAGTTA-1_10_127182705_A_G_- AAAGGGCCACCAGTTA-1 10 127182705 A G - 1 1 A>G T>C +AACAACCCATGTAACC-1_13_60729524_A_T_+ AACAACCCATGTAACC-1 13 60729524 A T + 1 1 A>T A>T +AACAAGAAGGTTCAGG-1_5_146261122_A_G_+ AACAAGAAGGTTCAGG-1 5 146261122 A G + 1 1 A>G A>G +AACCCAAAGAATTGTG-1_12_29732483_T_A_+ AACCCAAAGAATTGTG-1 12 29732483 T A + 1 1 T>A T>A +AAATGGAAGCAGATAT-1_16_59978416_C_G_- AAATGGAAGCAGATAT-1 16 59978416 C G - 1 1 C>G G>C +AAACGAAAGACAACAT-1_17_39847390_A_T_+ AAACGAAAGACAACAT-1 17 39847390 A T + 1 1 A>T A>T +AAAGAACCAAATTAGG-1_X_152224914_C_T_+ AAAGAACCAAATTAGG-1 X 152224914 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_5_25375958_G_A_- AACCACAAGCTTTGTG-1 5 25375958 G A - 1 1 G>A C>T +AAGATAGGTCATCAGT-1_16_66661549_A_T_- AAGATAGGTCATCAGT-1 16 66661549 A T - 1 1 A>T T>A +AAACCCATCCACACAA-1_X_136837253_T_G_+ AAACCCATCCACACAA-1 X 136837253 T G + 1 1 T>G T>G +AACCAACCAGTCGCTG-1_16_94468895_C_T_+ AACCAACCAGTCGCTG-1 16 94468895 C T + 1 1 C>T C>T +AACCAACTCAAGAATG-1_3_103056961_C_T_+ AACCAACTCAAGAATG-1 3 103056961 C T + 1 1 C>T C>T +AAAGTCCTCGCATTAG-1_18_21168824_G_A_- AAAGTCCTCGCATTAG-1 18 21168824 G A - 1 1 G>A C>T +AAAGAACAGCTAGATA-1_11_68904513_T_C_+ AAAGAACAGCTAGATA-1 11 68904513 T C + 1 1 T>C T>C +AAACGCTCAGTAGGAC-1_1_135768999_C_T_+ AAACGCTCAGTAGGAC-1 1 135768999 C T + 1 1 C>T C>T +AACCTGACACCAACAT-1_17_39848018_C_T_+ AACCTGACACCAACAT-1 17 39848018 C T + 1 1 C>T C>T +AAGATAGCAATAACGA-1_4_57717323_C_T_+ AAGATAGCAATAACGA-1 4 57717323 C T + 1 1 C>T C>T +AACAACCAGTTACTCG-1_1_85908515_C_T_+ AACAACCAGTTACTCG-1 1 85908515 C T + 1 1 C>T C>T +AAGAACAGTAAGATAC-1_8_95714736_C_T_+ AAGAACAGTAAGATAC-1 8 95714736 C T + 1 1 C>T C>T +AACAAGAGTTCTCACC-1_3_90524450_C_A_+ AACAAGAGTTCTCACC-1 3 90524450 C A + 1 1 C>A C>A +AACCAACTCGATGGAG-1_5_143505626_C_G_- AACCAACTCGATGGAG-1 5 143505626 C G - 1 1 C>G G>C +AACGTCATCTGGCTGG-1_10_33996764_T_A_- AACGTCATCTGGCTGG-1 10 33996764 T A - 1 1 T>A A>T +AACTTCTAGAGGTCGT-1_6_143208385_A_T_+ AACTTCTAGAGGTCGT-1 6 143208385 A T + 1 1 A>T A>T +AAACGCTGTCAACACT-1_MT_6723_C_T_+ AAACGCTGTCAACACT-1 MT 6723 C T + 1 1 C>T C>T +AACCTGATCGCTCATC-1_2_174346598_A_G_+ AACCTGATCGCTCATC-1 2 174346598 A G + 1 1 A>G A>G +AAAGGGCCACACTTAG-1_9_40785062_A_C_+ AAAGGGCCACACTTAG-1 9 40785062 A C + 1 1 A>C A>C +AAACGAAGTTCATCTT-1_16_43623818_G_A_+ AAACGAAGTTCATCTT-1 16 43623818 G A + 1 1 G>A G>A +AACCCAACAGAGTTGG-1_3_86111468_C_A_+ AACCCAACAGAGTTGG-1 3 86111468 C A + 1 1 C>A C>A +AAAGGTAGTATGTGTC-1_11_120578397_G_A_- AAAGGTAGTATGTGTC-1 11 120578397 G A - 1 1 G>A C>T +AACCATGGTGAGTTTC-1_8_106883964_C_A_- AACCATGGTGAGTTTC-1 8 106883964 C A - 1 1 C>A G>T +AACGAAATCGCCTTTG-1_17_39847458_A_G_- AACGAAATCGCCTTTG-1 17 39847458 A G - 1 1 A>G T>C +AACCCAAAGCAAATGT-1_9_72062234_A_T_- AACCCAAAGCAAATGT-1 9 72062234 A T - 1 1 A>T T>A +AAATGGAGTATTGGCT-1_10_80130622_G_A_- AAATGGAGTATTGGCT-1 10 80130622 G A - 1 1 G>A C>T +AACACACAGTGAGTGC-1_11_77711985_A_G_+ AACACACAGTGAGTGC-1 11 77711985 A G + 1 1 A>G A>G +AACACACTCGAACCTA-1_17_39848018_C_T_+ AACACACTCGAACCTA-1 17 39848018 C T + 1 1 C>T C>T AAACCCAAGATTGCGG-1_19_10629634_C_T_+ AAACCCAAGATTGCGG-1 19 10629634 C T + 1 1 C>T C>T -AAAGGTAAGCATTTGC-1_19_5802659_T_G_- AAAGGTAAGCATTTGC-1 19 5802659 T G - 1 2 T>G A>C -AACTTCTCACTAACGT-1_19_5802648_T_G_- AACTTCTCACTAACGT-1 19 5802648 T G - 1 6 T>G A>C -AACAGGGCAGATTTCG-1_19_4113547_T_C_+ AACAGGGCAGATTTCG-1 19 4113547 T C + 1 1 T>C T>C +AAAGGTATCAGTCATG-1_12_111115894_C_A_+ AAAGGTATCAGTCATG-1 12 111115894 C A + 1 1 C>A C>A +AAGAACAGTTGGAGGT-1_5_146261076_T_C_+ AAGAACAGTTGGAGGT-1 5 146261076 T C + 1 1 T>C T>C +AAGACAAAGGGCAGGA-1_2_98666947_G_C_- AAGACAAAGGGCAGGA-1 2 98666947 G C - 1 1 G>C C>G +AACAAAGAGCCGATTT-1_6_80269207_T_C_+ AACAAAGAGCCGATTT-1 6 80269207 T C + 1 1 T>C T>C +AAAGTGAAGGCATCGA-1_19_7215356_G_A_- AAAGTGAAGGCATCGA-1 19 7215356 G A - 1 1 G>A C>T +AAAGGGCCAACACAGG-1_17_39848018_C_T_+ AAAGGGCCAACACAGG-1 17 39848018 C T + 1 1 C>T C>T +AAGATAGGTCATCAGT-1_15_25363374_A_T_- AAGATAGGTCATCAGT-1 15 25363374 A T - 1 1 A>T T>A +AAACGAAAGGGAGGTG-1_8_72523276_T_G_- AAACGAAAGGGAGGTG-1 8 72523276 T G - 1 1 T>G A>C +AACCACAAGGACAGCT-1_4_141858525_A_C_- AACCACAAGGACAGCT-1 4 141858525 A C - 1 1 A>C T>G +AACTTCTAGCAGATAT-1_1_164437135_T_C_- AACTTCTAGCAGATAT-1 1 164437135 T C - 1 1 T>C A>G +AAGACTCTCGGAGATG-1_16_44087090_G_A_- AAGACTCTCGGAGATG-1 16 44087090 G A - 1 1 G>A C>T +AAGATAGCAATAACGA-1_1_58595761_G_A_+ AAGATAGCAATAACGA-1 1 58595761 G A + 1 1 G>A G>A +AAACCCACAATCTCTT-1_1_66698961_C_T_+ AAACCCACAATCTCTT-1 1 66698961 C T + 1 1 C>T C>T +AAAGGGCCACCAGTTA-1_17_39848018_C_T_+ AAAGGGCCACCAGTTA-1 17 39848018 C T + 1 1 C>T C>T +AAACGAAAGCGAACTG-1_10_83762565_T_C_+ AAACGAAAGCGAACTG-1 10 83762565 T C + 1 1 T>C T>C +AACAACCGTATGTCTG-1_14_123276801_T_C_- AACAACCGTATGTCTG-1 14 123276801 T C - 1 1 T>C A>G +AACCTTTCATCTCATT-1_MT_7421_G_A_+ AACCTTTCATCTCATT-1 MT 7421 G A + 1 3 G>A G>A +AACGGGAAGTTGCCCG-1_19_45750349_G_A_- AACGGGAAGTTGCCCG-1 19 45750349 G A - 1 1 G>A C>T +AACAAAGGTCGCTGCA-1_5_115298602_T_C_- AACAAAGGTCGCTGCA-1 5 115298602 T C - 1 1 T>C A>G +AAAGAACGTCTGTGTA-1_19_5802086_G_A_- AAAGAACGTCTGTGTA-1 19 5802086 G A - 1 1 G>A C>T +AAACGCTAGGCCTGCT-1_4_11204241_G_A_- AAACGCTAGGCCTGCT-1 4 11204241 G A - 1 1 G>A C>T +AACCACAAGAGTTGTA-1_9_123461940_T_G_+ AACCACAAGAGTTGTA-1 9 123461940 T G + 1 1 T>G T>G +AAACGAAAGGCTTTCA-1_15_98570265_G_A_- AAACGAAAGGCTTTCA-1 15 98570265 G A - 1 1 G>A C>T +AAGACTCGTCCACATA-1_16_76290133_G_T_- AAGACTCGTCCACATA-1 16 76290133 G T - 1 1 G>T C>A +AACGGGAAGTTGCCCG-1_19_5801601_C_G_- AACGGGAAGTTGCCCG-1 19 5801601 C G - 1 1 C>G G>C +AAACCCATCGGATAAA-1_17_33952430_C_A_- AAACCCATCGGATAAA-1 17 33952430 C A - 1 2 C>A G>T +AAATGGAAGCCGGATA-1_17_39847426_T_C_- AAATGGAAGCCGGATA-1 17 39847426 T C - 1 1 T>C A>G +AAGACAAAGAGTTCGG-1_17_39847458_A_G_+ AAGACAAAGAGTTCGG-1 17 39847458 A G + 1 1 A>G A>G +AAGAACACATTCCTCG-1_1_72711752_A_C_+ AAGAACACATTCCTCG-1 1 72711752 A C + 1 1 A>C A>C +AAAGTCCCAACCAGAG-1_4_139649406_C_G_+ AAAGTCCCAACCAGAG-1 4 139649406 C G + 1 1 C>G C>G AACCCAATCGCTTGCT-1_19_9984972_C_T_+ AACCCAATCGCTTGCT-1 19 9984972 C T + 1 1 C>T C>T -AAATGGAAGCAGATAT-1_19_23165995_C_G_+ AAATGGAAGCAGATAT-1 19 23165995 C G + 1 1 C>G C>G -AAGACAAAGGGCAGGA-1_19_5802230_A_G_- AAGACAAAGGGCAGGA-1 19 5802230 A G - 1 2 A>G T>C -AAGAACATCTCCGAAA-1_19_5802189_A_T_- AAGAACATCTCCGAAA-1 19 5802189 A T - 1 4 A>T T>A -AAGACTCCAACACAGG-1_19_5802614_G_A_- AAGACTCCAACACAGG-1 19 5802614 G A - 1 1 G>A C>T -AACCAACAGTATCTGC-1_19_5802660_G_A_- AACCAACAGTATCTGC-1 19 5802660 G A - 1 1 G>A C>T -AAGATAGGTCATCAGT-1_19_6906932_T_C_- AAGATAGGTCATCAGT-1 19 6906932 T C - 1 1 T>C A>G -AACTTCTAGGGATCTG-1_19_5107943_T_G_- AACTTCTAGGGATCTG-1 19 5107943 T G - 1 1 T>G A>C -AAGATAGCAATAACGA-1_19_5802631_G_C_- AAGATAGCAATAACGA-1 19 5802631 G C - 1 4 G>C C>G -AACAACCAGACGACTG-1_19_6530847_G_C_- AACAACCAGACGACTG-1 19 6530847 G C - 1 1 G>C C>G -AAGAACACAACTGATC-1_19_44550304_A_G_- AAGAACACAACTGATC-1 19 44550304 A G - 1 1 A>G T>C -AACGAAACACCGTGGT-1_19_4035914_G_A_- AACGAAACACCGTGGT-1 19 4035914 G A - 1 1 G>A C>T -AACAACCCAGGAACCA-1_19_5802657_G_A_- AACAACCCAGGAACCA-1 19 5802657 G A - 1 1 G>A C>T -AAACGAAGTGCTCTCT-1_19_5800015_G_T_- AAACGAAGTGCTCTCT-1 19 5800015 G T - 1 1 G>T C>A -AAACGAAAGCGAACTG-1_19_4738564_C_G_+ AAACGAAAGCGAACTG-1 19 4738564 C G + 1 1 C>G C>G -AAAGTGAAGGCATCGA-1_19_7215442_G_A_- AAAGTGAAGGCATCGA-1 19 7215442 G A - 1 1 G>A C>T -AACGGGAGTTGTGCCG-1_19_5802077_A_G_- AACGGGAGTTGTGCCG-1 19 5802077 A G - 1 1 A>G T>C -AAAGGGCTCTCACTCG-1_19_5802543_T_G_- AAAGGGCTCTCACTCG-1 19 5802543 T G - 1 1 T>G A>C -AAACGAAGTGTTTACG-1_19_12776452_T_C_- AAACGAAGTGTTTACG-1 19 12776452 T C - 1 1 T>C A>G -AAAGGGCCATGTCTAG-1_19_7206271_G_C_- AAAGGGCCATGTCTAG-1 19 7206271 G C - 1 1 G>C C>G +AAAGTCCAGAGTTGAT-1_17_39848001_T_C_+ AAAGTCCAGAGTTGAT-1 17 39848001 T C + 1 1 T>C T>C +AAAGGTACAATTGCAC-1_17_39848018_C_T_+ AAAGGTACAATTGCAC-1 17 39848018 C T + 1 1 C>T C>T +AACACACTCGTAGCCG-1_8_94154086_C_T_+ AACACACTCGTAGCCG-1 8 94154086 C T + 1 1 C>T C>T +AAGACTCAGTGAATAC-1_4_142138250_C_T_- AAGACTCAGTGAATAC-1 4 142138250 C T - 1 1 C>T G>A +AAGACTCGTGGTACAG-1_17_24721004_T_C_+ AAGACTCGTGGTACAG-1 17 24721004 T C + 1 1 T>C T>C +AACCTGACAAGTGACG-1_8_83992197_C_A_+ AACCTGACAAGTGACG-1 8 83992197 C A + 1 1 C>A C>A +AAGAACACACTAGGTT-1_10_81460068_G_A_- AAGAACACACTAGGTT-1 10 81460068 G A - 1 1 G>A C>T +AAAGTGATCCGCGGAT-1_4_155260402_G_A_- AAAGTGATCCGCGGAT-1 4 155260402 G A - 1 1 G>A C>T +AAATGGATCGCCCAGA-1_16_94469023_C_T_+ AAATGGATCGCCCAGA-1 16 94469023 C T + 1 1 C>T C>T +AACGGGAAGTGCCGAA-1_17_33952095_G_A_- AACGGGAAGTGCCGAA-1 17 33952095 G A - 1 1 G>A C>T +AACAACCGTAGCCCTG-1_2_5379332_A_T_- AACAACCGTAGCCCTG-1 2 5379332 A T - 1 1 A>T T>A +AACAACCAGATTGAGT-1_16_38396235_A_T_- AACAACCAGATTGAGT-1 16 38396235 A T - 1 1 A>T T>A +AAACGAAGTGTTTACG-1_18_40211240_A_G_- AAACGAAGTGTTTACG-1 18 40211240 A G - 1 1 A>G T>C +AACACACGTGTTGCCG-1_17_39847403_T_G_- AACACACGTGTTGCCG-1 17 39847403 T G - 1 1 T>G A>C +AAAGGATCACGTAGTT-1_15_78428798_G_C_+ AAAGGATCACGTAGTT-1 15 78428798 G C + 1 1 G>C G>C +AAACGCTGTCAACACT-1_16_45711486_A_C_- AAACGCTGTCAACACT-1 16 45711486 A C - 1 1 A>C T>G +AAAGTCCGTGACTGTT-1_15_12184989_A_G_+ AAAGTCCGTGACTGTT-1 15 12184989 A G + 1 1 A>G A>G +AAGAACATCCTGGTCT-1_11_61450371_C_G_- AAGAACATCCTGGTCT-1 11 61450371 C G - 1 1 C>G G>C +AACCCAAAGAATTGTG-1_12_29732480_T_A_+ AACCCAAAGAATTGTG-1 12 29732480 T A + 1 1 T>A T>A +AACCTGAAGTCCCAGC-1_6_29200656_G_A_- AACCTGAAGTCCCAGC-1 6 29200656 G A - 1 1 G>A C>T +AACTTCTAGAGAACCC-1_9_3024470_G_T_- AACTTCTAGAGAACCC-1 9 3024470 G T - 1 1 G>T C>A +AACCAACCAGTCGCTG-1_5_76999765_C_T_+ AACCAACCAGTCGCTG-1 5 76999765 C T + 1 1 C>T C>T +AACCTGATCTCTCTAA-1_11_29742725_C_T_+ AACCTGATCTCTCTAA-1 11 29742725 C T + 1 1 C>T C>T +AACAAAGCATTGCTGA-1_17_39848018_C_T_+ AACAAAGCATTGCTGA-1 17 39848018 C T + 1 1 C>T C>T +AAAGGGCGTACGATGG-1_10_80172476_C_T_+ AAAGGGCGTACGATGG-1 10 80172476 C T + 1 1 C>T C>T +AAGAACAAGGGTTTCT-1_X_150539692_T_C_- AAGAACAAGGGTTTCT-1 X 150539692 T C - 1 1 T>C A>G +AACCAACGTAACAGGC-1_4_155888706_A_G_+ AACCAACGTAACAGGC-1 4 155888706 A G + 1 1 A>G A>G +AACCAACGTAGGTAGC-1_2_41644384_C_T_- AACCAACGTAGGTAGC-1 2 41644384 C T - 1 1 C>T G>A +AACCTGACAAGTGACG-1_8_83992249_T_G_+ AACCTGACAAGTGACG-1 8 83992249 T G + 1 1 T>G T>G +AAGACAATCGCGTAGC-1_X_41807075_T_A_- AAGACAATCGCGTAGC-1 X 41807075 T A - 1 1 T>A A>T +AAATGGAGTGGTCAAG-1_17_39847060_G_T_+ AAATGGAGTGGTCAAG-1 17 39847060 G T + 1 1 G>T G>T +AACTTCTCACACGTGC-1_4_102555489_T_A_+ AACTTCTCACACGTGC-1 4 102555489 T A + 1 1 T>A T>A +AAAGGTATCCCTCTCC-1_9_3000578_C_A_- AAAGGTATCCCTCTCC-1 9 3000578 C A - 1 1 C>A G>T +AAAGTCCAGTCGGCCT-1_13_94842879_C_T_+ AAAGTCCAGTCGGCCT-1 13 94842879 C T + 1 1 C>T C>T +AACCACAAGCCTTTCC-1_3_88635693_C_T_+ AACCACAAGCCTTTCC-1 3 88635693 C T + 1 1 C>T C>T +AAACGAAGTCGTTCAA-1_11_98030414_C_T_+ AAACGAAGTCGTTCAA-1 11 98030414 C T + 1 1 C>T C>T +AACGGGATCAGGAACG-1_14_38468576_C_T_- AACGGGATCAGGAACG-1 14 38468576 C T - 1 1 C>T G>A +AACAACCCACACACGC-1_13_17712686_C_A_- AACAACCCACACACGC-1 13 17712686 C A - 1 1 C>A G>T +AAAGTCCTCCACTGAA-1_6_114317413_A_T_+ AAAGTCCTCCACTGAA-1 6 114317413 A T + 1 1 A>T A>T +AAACCCACACACCTGG-1_11_120345827_G_A_- AAACCCACACACCTGG-1 11 120345827 G A - 1 1 G>A C>T +AACAAGAAGTAAACTG-1_2_125674722_C_T_+ AACAAGAAGTAAACTG-1 2 125674722 C T + 1 1 C>T C>T +AAAGGGCTCTCACTCG-1_7_15917287_G_T_- AAAGGGCTCTCACTCG-1 7 15917287 G T - 1 1 G>T C>A +AAGACTCGTGGTACAG-1_17_24721034_T_G_+ AAGACTCGTGGTACAG-1 17 24721034 T G + 1 1 T>G T>G +AACCACATCAAAGGTA-1_17_70994385_A_C_- AACCACATCAAAGGTA-1 17 70994385 A C - 1 1 A>C T>G +AACTTCTAGCAGATAT-1_16_91647871_A_G_+ AACTTCTAGCAGATAT-1 16 91647871 A G + 1 1 A>G A>G +AACCATGTCATCGCTC-1_9_3000527_T_C_- AACCATGTCATCGCTC-1 9 3000527 T C - 1 1 T>C A>G +AACCTGATCGCTCATC-1_7_6782396_C_T_+ AACCTGATCGCTCATC-1 7 6782396 C T + 1 1 C>T C>T +AACTTCTCATGAATAG-1_11_96073083_G_A_- AACTTCTCATGAATAG-1 11 96073083 G A - 1 1 G>A C>T +AAAGGGCTCTCACTCG-1_5_129887285_A_C_- AAAGGGCTCTCACTCG-1 5 129887285 A C - 1 1 A>C T>G +AAGACAAAGTCGAATA-1_16_57391454_T_C_- AAGACAAAGTCGAATA-1 16 57391454 T C - 1 1 T>C A>G +AACTTCTCACTAACGT-1_6_67284128_C_A_+ AACTTCTCACTAACGT-1 6 67284128 C A + 1 1 C>A C>A +AAGATAGAGCATGAAT-1_11_59792047_G_A_- AAGATAGAGCATGAAT-1 11 59792047 G A - 1 1 G>A C>T +AACTTCTCAGAATTCC-1_2_30400370_G_C_+ AACTTCTCAGAATTCC-1 2 30400370 G C + 1 1 G>C G>C +AACACACAGTGCACAG-1_9_107614326_A_T_- AACACACAGTGCACAG-1 9 107614326 A T - 1 1 A>T T>A +AAAGAACTCCCAGGCA-1_5_150196488_G_A_+ AAAGAACTCCCAGGCA-1 5 150196488 G A + 1 1 G>A G>A +AACAACCGTATGTCTG-1_14_18811883_C_A_- AACAACCGTATGTCTG-1 14 18811883 C A - 1 1 C>A G>T +AAGACAAAGGCCCACT-1_16_57391688_T_G_- AAGACAAAGGCCCACT-1 16 57391688 T G - 1 1 T>G A>C +AAACGCTGTGAGGATC-1_5_81020482_G_A_+ AAACGCTGTGAGGATC-1 5 81020482 G A + 1 1 G>A G>A +AAACCCACACCGTGGT-1_1_160375953_G_A_- AAACCCACACCGTGGT-1 1 160375953 G A - 1 1 G>A C>T +AAAGTCCGTGTTCAGT-1_13_103740474_T_C_- AAAGTCCGTGTTCAGT-1 13 103740474 T C - 1 1 T>C A>G +AAACCCACATATCTCT-1_6_48541575_G_T_+ AAACCCACATATCTCT-1 6 48541575 G T + 1 1 G>T G>T +AAGACTCGTTGCTCGG-1_1_59232263_T_C_- AAGACTCGTTGCTCGG-1 1 59232263 T C - 1 1 T>C A>G +AAACGCTAGGTTACAA-1_11_86584905_G_A_- AAACGCTAGGTTACAA-1 11 86584905 G A - 1 1 G>A C>T +AAATGGAGTTCCGCAG-1_9_122117361_T_C_+ AAATGGAGTTCCGCAG-1 9 122117361 T C + 1 1 T>C T>C +AACAAGAAGGTTCAGG-1_5_146261080_C_A_+ AACAAGAAGGTTCAGG-1 5 146261080 C A + 1 1 C>A C>A +AAAGGTATCGATTGAC-1_9_3017998_T_A_- AAAGGTATCGATTGAC-1 9 3017998 T A - 1 1 T>A A>T +AACAAAGTCTACTCAT-1_10_79711873_G_A_+ AACAAAGTCTACTCAT-1 10 79711873 G A + 1 1 G>A G>A +AAATGGAAGACACACG-1_11_75673699_T_C_+ AAATGGAAGACACACG-1 11 75673699 T C + 1 1 T>C T>C +AAACGAACAAACGGCA-1_9_3028807_G_T_- AAACGAACAAACGGCA-1 9 3028807 G T - 1 1 G>T C>A +AACCACAGTCTACAAC-1_14_57889322_C_T_- AACCACAGTCTACAAC-1 14 57889322 C T - 1 1 C>T G>A +AAGAACACAGGGAATC-1_5_117283181_A_C_- AAGAACACAGGGAATC-1 5 117283181 A C - 1 1 A>C T>G +AACCAACAGTATCTGC-1_16_57391685_G_A_- AACCAACAGTATCTGC-1 16 57391685 G A - 1 1 G>A C>T +AACAAAGTCCCGAGAC-1_8_119348795_C_T_+ AACAAAGTCCCGAGAC-1 8 119348795 C T + 1 1 C>T C>T +AACAAAGGTAGGGTAC-1_8_109837767_C_T_+ AACAAAGGTAGGGTAC-1 8 109837767 C T + 1 1 C>T C>T +AAAGAACTCGTGGGAA-1_8_94179852_G_T_+ AAAGAACTCGTGGGAA-1 8 94179852 G T + 1 1 G>T G>T +AAAGTCCTCCGATGCG-1_19_5802617_T_C_- AAAGTCCTCCGATGCG-1 19 5802617 T C - 1 19 T>C A>G +AACAACCAGTAATACG-1_11_81876681_C_T_- AACAACCAGTAATACG-1 11 81876681 C T - 1 1 C>T G>A +AACCCAACACTGTTCC-1_8_66031030_C_T_+ AACCCAACACTGTTCC-1 8 66031030 C T + 1 1 C>T C>T +AACCTGATCTTCGTGC-1_6_21834160_A_C_- AACCTGATCTTCGTGC-1 6 21834160 A C - 1 1 A>C T>G +AAATGGATCCCTTGTG-1_19_47778911_A_C_- AAATGGATCCCTTGTG-1 19 47778911 A C - 1 1 A>C T>G +AAGATAGGTCATCAGT-1_12_84971226_G_A_+ AAGATAGGTCATCAGT-1 12 84971226 G A + 1 1 G>A G>A +AACCTTTTCGCAGTCG-1_2_37566354_C_T_+ AACCTTTTCGCAGTCG-1 2 37566354 C T + 1 1 C>T C>T +AACAAGAAGTAAACTG-1_1_156366484_C_A_+ AACAAGAAGTAAACTG-1 1 156366484 C A + 1 1 C>A C>A +AACCTGAGTGCCTGCA-1_10_59988713_G_A_- AACCTGAGTGCCTGCA-1 10 59988713 G A - 1 1 G>A C>T +AAACCCATCGGATAAA-1_5_115343545_C_T_+ AAACCCATCGGATAAA-1 5 115343545 C T + 1 1 C>T C>T +AACCCAAGTATCGATC-1_17_53507399_C_T_+ AACCCAAGTATCGATC-1 17 53507399 C T + 1 1 C>T C>T +AACAAGAGTTCTCACC-1_16_57391677_C_G_- AACAAGAGTTCTCACC-1 16 57391677 C G - 1 1 C>G G>C +AAAGGTAGTGACGTCC-1_11_70669791_G_A_- AAAGGTAGTGACGTCC-1 11 70669791 G A - 1 1 G>A C>T +AAACGCTCAGTAGGAC-1_1_169695733_C_T_+ AAACGCTCAGTAGGAC-1 1 169695733 C T + 1 1 C>T C>T +AAAGTGAGTCAAGGCA-1_17_39848018_C_T_+ AAAGTGAGTCAAGGCA-1 17 39848018 C T + 1 1 C>T C>T +AAACGAAGTTCATCTT-1_18_39102493_C_T_+ AAACGAAGTTCATCTT-1 18 39102493 C T + 1 1 C>T C>T +AACTTCTAGCAGATAT-1_10_40857554_A_G_- AACTTCTAGCAGATAT-1 10 40857554 A G - 1 1 A>G T>C +AAATGGATCCCTTGTG-1_13_42866375_G_T_+ AAATGGATCCCTTGTG-1 13 42866375 G T + 1 1 G>T G>T +AAAGTGATCTCGGCTT-1_15_102215430_A_T_+ AAAGTGATCTCGGCTT-1 15 102215430 A T + 1 1 A>T A>T +AACGGGATCTTCCCGA-1_5_146261076_T_C_+ AACGGGATCTTCCCGA-1 5 146261076 T C + 1 1 T>C T>C +AAAGGGCCACTCAGAT-1_9_3004626_A_T_- AAAGGGCCACTCAGAT-1 9 3004626 A T - 1 1 A>T T>A +AAACGCTCAGTAGGAC-1_11_30099588_G_A_- AAACGCTCAGTAGGAC-1 11 30099588 G A - 1 1 G>A C>T +AACCTGATCGGATACT-1_15_36997131_G_C_- AACCTGATCGGATACT-1 15 36997131 G C - 1 1 G>C C>G +AACAGGGCAAACTCGT-1_X_136837323_C_G_+ AACAGGGCAAACTCGT-1 X 136837323 C G + 1 1 C>G C>G +AAACGCTCAATTTCGG-1_15_58942581_G_A_- AAACGCTCAATTTCGG-1 15 58942581 G A - 1 1 G>A C>T +AAGAACAGTCGTTGCG-1_11_85465680_T_C_+ AAGAACAGTCGTTGCG-1 11 85465680 T C + 1 1 T>C T>C +AAAGGGCAGTAAGCAT-1_8_83571823_A_G_- AAAGGGCAGTAAGCAT-1 8 83571823 A G - 1 1 A>G T>C +AACTTCTAGTGATGGC-1_1_68907595_T_A_- AACTTCTAGTGATGGC-1 1 68907595 T A - 1 1 T>A A>T +AAACCCAGTCAAATCC-1_4_129111904_G_A_- AAACCCAGTCAAATCC-1 4 129111904 G A - 1 1 G>A C>T +AACCATGAGTTCCGTA-1_X_136836351_C_T_+ AACCATGAGTTCCGTA-1 X 136836351 C T + 1 1 C>T C>T +AACAACCGTTGCAACT-1_10_3946301_G_T_+ AACAACCGTTGCAACT-1 10 3946301 G T + 1 1 G>T G>T +AAGACAATCTCGACCT-1_17_39847403_T_G_- AAGACAATCTCGACCT-1 17 39847403 T G - 1 2 T>G A>C +AACGGGAGTGAGCTCC-1_7_81342818_G_A_- AACGGGAGTGAGCTCC-1 7 81342818 G A - 1 1 G>A C>T +AAACGAACAACCGACC-1_MT_9196_T_C_+ AAACGAACAACCGACC-1 MT 9196 T C + 1 1 T>C T>C +AACAAGAAGTAAACTG-1_4_19543273_A_G_- AACAAGAAGTAAACTG-1 4 19543273 A G - 1 1 A>G T>C +AAACGCTCACCTAAAC-1_2_3328662_C_T_+ AAACGCTCACCTAAAC-1 2 3328662 C T + 1 1 C>T C>T +AAAGGTATCTTTGCGC-1_12_72211859_G_A_- AAAGGTATCTTTGCGC-1 12 72211859 G A - 1 1 G>A C>T +AAAGTCCCATGTGGCC-1_15_74994990_T_C_- AAAGTCCCATGTGGCC-1 15 74994990 T C - 1 1 T>C A>G +AAAGTCCTCCGATGCG-1_19_5802658_C_T_- AAAGTCCTCCGATGCG-1 19 5802658 C T - 1 19 C>T G>A +AACGGGATCAGGAACG-1_16_18152252_C_T_+ AACGGGATCAGGAACG-1 16 18152252 C T + 1 1 C>T C>T +AACGGGAGTTTGGCTA-1_12_87042025_G_A_+ AACGGGAGTTTGGCTA-1 12 87042025 G A + 1 1 G>A G>A +AACGTCACACGAGGTA-1_1_118321902_T_A_+ AACGTCACACGAGGTA-1 1 118321902 T A + 1 1 T>A T>A +AACAACCAGTAATACG-1_18_44424747_T_C_+ AACAACCAGTAATACG-1 18 44424747 T C + 1 1 T>C T>C +AAGACAAAGATGCTAA-1_16_92078999_C_G_+ AAGACAAAGATGCTAA-1 16 92078999 C G + 1 1 C>G C>G +AACCATGTCCAATCTT-1_17_39848018_C_T_+ AACCATGTCCAATCTT-1 17 39848018 C T + 1 1 C>T C>T +AAATGGACAAGCGCAA-1_4_110204714_A_G_- AAATGGACAAGCGCAA-1 4 110204714 A G - 1 1 A>G T>C +AAGATAGAGGTTGAGC-1_9_123461940_T_G_+ AAGATAGAGGTTGAGC-1 9 123461940 T G + 1 1 T>G T>G +AAGACTCGTCAAGTTC-1_4_155559154_C_T_+ AAGACTCGTCAAGTTC-1 4 155559154 C T + 1 1 C>T C>T +AACAACCGTATGTCTG-1_12_61709517_A_G_+ AACAACCGTATGTCTG-1 12 61709517 A G + 1 1 A>G A>G +AACACACTCCGAAGGA-1_17_32213645_C_G_- AACACACTCCGAAGGA-1 17 32213645 C G - 1 1 C>G G>C +AACGTCATCCATCTAT-1_2_98666596_T_G_- AACGTCATCCATCTAT-1 2 98666596 T G - 1 1 T>G A>C +AAAGGGCCATTGCTTT-1_17_45570789_A_G_- AAAGGGCCATTGCTTT-1 17 45570789 A G - 1 1 A>G T>C +AACGAAATCTATCGTT-1_8_46207592_G_A_- AACGAAATCTATCGTT-1 8 46207592 G A - 1 1 G>A C>T +AACACACCAGAGGCTA-1_17_39847109_C_T_+ AACACACCAGAGGCTA-1 17 39847109 C T + 1 2 C>T C>T +AAGACAAAGTATCTGC-1_6_138156686_A_G_+ AAGACAAAGTATCTGC-1 6 138156686 A G + 1 1 A>G A>G +AACCACATCCGTACGG-1_16_93610267_C_T_+ AACCACATCCGTACGG-1 16 93610267 C T + 1 1 C>T C>T +AAACGCTGTCATGGCC-1_9_3035199_C_G_- AAACGCTGTCATGGCC-1 9 3035199 C G - 1 1 C>G G>C +AAACGAATCGGATAAA-1_17_39848018_C_T_+ AAACGAATCGGATAAA-1 17 39848018 C T + 1 1 C>T C>T +AAAGGTAGTCCAGAAG-1_17_39846977_C_T_+ AAAGGTAGTCCAGAAG-1 17 39846977 C T + 1 1 C>T C>T +AAACGCTAGGTAGGCT-1_15_99735619_G_A_- AAACGCTAGGTAGGCT-1 15 99735619 G A - 1 1 G>A C>T +AACGAAACATCTCAAG-1_17_39847390_A_T_+ AACGAAACATCTCAAG-1 17 39847390 A T + 1 1 A>T A>T +AACACACAGCGGTAAC-1_5_146261076_T_C_+ AACACACAGCGGTAAC-1 5 146261076 T C + 1 1 T>C T>C +AAAGGTACACAGTCAT-1_12_44311880_A_T_+ AAAGGTACACAGTCAT-1 12 44311880 A T + 1 1 A>T A>T +AACAGGGCAGATTTCG-1_MT_9098_A_G_+ AACAGGGCAGATTTCG-1 MT 9098 A G + 1 1 A>G A>G +AAAGTCCTCCGATGCG-1_13_119707838_T_G_+ AAAGTCCTCCGATGCG-1 13 119707838 T G + 1 1 T>G T>G +AAGACAAAGGGCAGGA-1_1_120342775_T_A_+ AAGACAAAGGGCAGGA-1 1 120342775 T A + 1 1 T>A T>A +AAGACTCTCGGAGATG-1_3_95871725_C_T_+ AAGACTCTCGGAGATG-1 3 95871725 C T + 1 1 C>T C>T +AACACACAGGATCACG-1_17_39847403_T_G_+ AACACACAGGATCACG-1 17 39847403 T G + 1 1 T>G T>G +AACCAACGTTTCGTGA-1_5_62644202_C_T_- AACCAACGTTTCGTGA-1 5 62644202 C T - 1 1 C>T G>A +AAGAACAGTTGCTCCT-1_4_116990358_T_G_- AAGAACAGTTGCTCCT-1 4 116990358 T G - 1 1 T>G A>C +AACAAAGTCTGAGAAA-1_17_11591246_A_G_+ AACAAAGTCTGAGAAA-1 17 11591246 A G + 1 1 A>G A>G +AAACGCTCAAAGACGC-1_X_102185562_T_C_- AAACGCTCAAAGACGC-1 X 102185562 T C - 1 1 T>C A>G +AACAACCGTCATCGGC-1_9_44612861_C_T_+ AACAACCGTCATCGGC-1 9 44612861 C T + 1 1 C>T C>T +AACCACAAGGACAGCT-1_1_55078096_G_A_- AACCACAAGGACAGCT-1 1 55078096 G A - 1 1 G>A C>T +AACGTCATCTGGCTGG-1_7_126795450_T_C_- AACGTCATCTGGCTGG-1 7 126795450 T C - 1 1 T>C A>G +AACGAAAAGCTAAACA-1_2_174462574_C_A_- AACGAAAAGCTAAACA-1 2 174462574 C A - 1 1 C>A G>T +AACAGGGTCGGTCGGT-1_11_85139938_G_A_- AACAGGGTCGGTCGGT-1 11 85139938 G A - 1 1 G>A C>T +AAGATAGAGCCAACCC-1_4_91251077_A_T_- AAGATAGAGCCAACCC-1 4 91251077 A T - 1 1 A>T T>A +AAAGGATAGGTGAGCT-1_11_29546378_C_T_- AAAGGATAGGTGAGCT-1 11 29546378 C T - 1 1 C>T G>A +AAGACAAAGTATCTGC-1_13_44869614_A_G_+ AAGACAAAGTATCTGC-1 13 44869614 A G + 1 1 A>G A>G +AACGGGAAGTTGCCCG-1_17_87433503_G_A_- AACGGGAAGTTGCCCG-1 17 87433503 G A - 1 1 G>A C>T +AACAGGGGTTACGATC-1_9_107773562_A_T_- AACAGGGGTTACGATC-1 9 107773562 A T - 1 1 A>T T>A +AACCTGAAGGTAGACC-1_6_146578193_C_T_+ AACCTGAAGGTAGACC-1 6 146578193 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_5_49409017_G_A_- AACCACAAGCTTTGTG-1 5 49409017 G A - 1 1 G>A C>T +AAAGGATGTAAGATTG-1_16_4617146_T_C_- AAAGGATGTAAGATTG-1 16 4617146 T C - 1 1 T>C A>G +AACACACTCTCTCGAC-1_13_44869614_A_G_+ AACACACTCTCTCGAC-1 13 44869614 A G + 1 1 A>G A>G +AAACCCAAGATTGCGG-1_14_54888029_C_T_+ AAACCCAAGATTGCGG-1 14 54888029 C T + 1 1 C>T C>T +AAAGGGCCACTTCAAG-1_6_71508986_G_A_+ AAAGGGCCACTTCAAG-1 6 71508986 G A + 1 1 G>A G>A +AAGACAAGTACTGACT-1_12_100206182_G_A_+ AAGACAAGTACTGACT-1 12 100206182 G A + 1 1 G>A G>A +AAACCCACAGTTCTAG-1_13_25252212_G_A_- AAACCCACAGTTCTAG-1 13 25252212 G A - 1 1 G>A C>T +AACTTCTTCTTCACGC-1_14_44614105_A_G_- AACTTCTTCTTCACGC-1 14 44614105 A G - 1 1 A>G T>C +AAGAACACAAAGGTTA-1_9_70554625_T_G_+ AAGAACACAAAGGTTA-1 9 70554625 T G + 1 1 T>G T>G +AACCAACGTTTCGTGA-1_10_32571543_G_A_- AACCAACGTTTCGTGA-1 10 32571543 G A - 1 1 G>A C>T +AAAGGATGTGCTCGTG-1_11_95678127_C_T_+ AAAGGATGTGCTCGTG-1 11 95678127 C T + 1 1 C>T C>T +AAACGCTCACATAGCT-1_17_39848018_C_T_+ AAACGCTCACATAGCT-1 17 39848018 C T + 1 1 C>T C>T +AAACGCTAGGTTACAA-1_5_92054678_A_T_- AAACGCTAGGTTACAA-1 5 92054678 A T - 1 1 A>T T>A +AACCTTTAGACCAGAC-1_19_5801530_A_G_- AACCTTTAGACCAGAC-1 19 5801530 A G - 1 1 A>G T>C +AAGACTCGTCCACATA-1_16_57391677_C_G_- AAGACTCGTCCACATA-1 16 57391677 C G - 1 1 C>G G>C +AAACCCATCGGATAAA-1_1_72302979_C_A_+ AAACCCATCGGATAAA-1 1 72302979 C A + 1 1 C>A C>A +AAATGGATCTGCGGCA-1_5_71763533_T_C_+ AAATGGATCTGCGGCA-1 5 71763533 T C + 1 1 T>C T>C +AAAGTCCCACAAATGA-1_16_85013645_C_T_- AAAGTCCCACAAATGA-1 16 85013645 C T - 1 1 C>T G>A +AACAACCCATGTAACC-1_17_39848018_C_T_+ AACAACCCATGTAACC-1 17 39848018 C T + 1 1 C>T C>T +AACCTGACACACAGAG-1_16_57391680_C_T_- AACCTGACACACAGAG-1 16 57391680 C T - 1 1 C>T G>A AACAGGGCAAACTCGT-1_19_5802603_C_T_- AACAGGGCAAACTCGT-1 19 5802603 C T - 1 6 C>T G>A -AACTTCTCACTAACGT-1_19_5802060_G_C_- AACTTCTCACTAACGT-1 19 5802060 G C - 1 2 G>C C>G -AAACGCTCAGTAGGAC-1_19_7215253_G_A_- AAACGCTCAGTAGGAC-1 19 7215253 G A - 1 1 G>A C>T -AACAGGGCAAACTCGT-1_19_5802609_C_A_- AACAGGGCAAACTCGT-1 19 5802609 C A - 1 6 C>A G>T -AACAGGGGTATGTCTG-1_19_9985050_C_T_+ AACAGGGGTATGTCTG-1 19 9985050 C T + 1 1 C>T C>T -AACAAAGCACGCAGTC-1_19_5802493_T_A_- AACAAAGCACGCAGTC-1 19 5802493 T A - 1 1 T>A A>T -AACCCAATCCTCTAGC-1_19_5802656_C_T_- AACCCAATCCTCTAGC-1 19 5802656 C T - 1 2 C>T G>A -AACCACAGTGTTCCTC-1_19_21392296_A_T_- AACCACAGTGTTCCTC-1 19 21392296 A T - 1 1 A>T T>A +AAACGCTGTCATGGCC-1_1_75263986_A_C_- AAACGCTGTCATGGCC-1 1 75263986 A C - 1 1 A>C T>G +AAACGAACATAGCACT-1_17_39848018_C_T_+ AAACGAACATAGCACT-1 17 39848018 C T + 1 1 C>T C>T +AACCATGCATAATCGC-1_17_39847403_T_G_- AACCATGCATAATCGC-1 17 39847403 T G - 1 1 T>G A>C +AAAGTCCAGTCGGCCT-1_7_140069982_T_C_- AAAGTCCAGTCGGCCT-1 7 140069982 T C - 1 1 T>C A>G +AACGTCAAGCGAGGAG-1_7_28178970_A_T_+ AACGTCAAGCGAGGAG-1 7 28178970 A T + 1 1 A>T A>T +AACAACCAGTAATACG-1_14_34966544_T_C_+ AACAACCAGTAATACG-1 14 34966544 T C + 1 1 T>C T>C +AACGGGAAGTTGCCCG-1_1_180162436_C_T_+ AACGGGAAGTTGCCCG-1 1 180162436 C T + 1 1 C>T C>T +AAACGAAGTGTTTACG-1_16_57391683_T_A_- AAACGAAGTGTTTACG-1 16 57391683 T A - 1 1 T>A A>T +AACAAAGGTACTGCGC-1_16_57391454_T_C_- AACAAAGGTACTGCGC-1 16 57391454 T C - 1 1 T>C A>G +AACAACCGTATGTCTG-1_17_39848018_C_T_+ AACAACCGTATGTCTG-1 17 39848018 C T + 1 1 C>T C>T +AACAACCCAGGAACCA-1_4_108852125_C_T_+ AACAACCCAGGAACCA-1 4 108852125 C T + 1 1 C>T C>T +AACCATGGTGAGTTTC-1_8_18895454_G_A_- AACCATGGTGAGTTTC-1 8 18895454 G A - 1 1 G>A C>T +AAGAACATCTCCGAAA-1_9_46223995_A_G_+ AAGAACATCTCCGAAA-1 9 46223995 A G + 1 1 A>G A>G +AACGGGACATATGCGT-1_13_44869614_A_G_+ AACGGGACATATGCGT-1 13 44869614 A G + 1 1 A>G A>G +AAACCCACAATCTCTT-1_6_36715006_G_T_- AAACCCACAATCTCTT-1 6 36715006 G T - 1 1 G>T C>A +AAGACAAAGAGTTCGG-1_8_85718839_G_A_- AAGACAAAGAGTTCGG-1 8 85718839 G A - 1 1 G>A C>T +AAGACTCGTTGCTCGG-1_2_127638613_A_G_- AAGACTCGTTGCTCGG-1 2 127638613 A G - 1 1 A>G T>C +AAGACAAAGCGCCTTG-1_3_122925530_C_T_+ AAGACAAAGCGCCTTG-1 3 122925530 C T + 1 1 C>T C>T +AAACGCTTCAGCAGAG-1_8_94782341_C_T_+ AAACGCTTCAGCAGAG-1 8 94782341 C T + 1 1 C>T C>T +AAAGTGAGTATCACCA-1_16_57391677_C_G_- AAAGTGAGTATCACCA-1 16 57391677 C G - 1 1 C>G G>C +AAAGAACGTCCTCATC-1_17_39847403_T_G_- AAAGAACGTCCTCATC-1 17 39847403 T G - 1 1 T>G A>C +AACCAACAGGTCACTT-1_17_39848018_C_T_+ AACCAACAGGTCACTT-1 17 39848018 C T + 1 1 C>T C>T +AAGACTCCACATACTG-1_5_146261106_C_G_+ AAGACTCCACATACTG-1 5 146261106 C G + 1 1 C>G C>G +AACAACCGTATGTCTG-1_2_26328208_C_A_+ AACAACCGTATGTCTG-1 2 26328208 C A + 1 1 C>A C>A +AAAGTCCAGTCGGCCT-1_11_101971371_G_A_- AAAGTCCAGTCGGCCT-1 11 101971371 G A - 1 1 G>A C>T +AACCTTTCATTGAAAG-1_16_38449819_C_T_- AACCTTTCATTGAAAG-1 16 38449819 C T - 1 1 C>T G>A +AACCTGACATCATCCC-1_9_107665925_T_G_- AACCTGACATCATCCC-1 9 107665925 T G - 1 1 T>G A>C +AACGGGAAGACAGCGT-1_5_130847199_C_T_+ AACGGGAAGACAGCGT-1 5 130847199 C T + 1 1 C>T C>T +AAATGGAAGCAGATAT-1_16_59978414_A_T_- AAATGGAAGCAGATAT-1 16 59978414 A T - 1 1 A>T T>A +AACGGGACAAACTCTG-1_5_121205544_G_A_+ AACGGGACAAACTCTG-1 5 121205544 G A + 1 1 G>A G>A +AAAGGTAAGGAACGTC-1_6_54892439_C_T_+ AAAGGTAAGGAACGTC-1 6 54892439 C T + 1 1 C>T C>T +AAGACAAGTACTGACT-1_9_123461940_T_G_+ AAGACAAGTACTGACT-1 9 123461940 T G + 1 1 T>G T>G +AAGACTCCAAGTATCC-1_8_69113667_C_T_+ AAGACTCCAAGTATCC-1 8 69113667 C T + 1 1 C>T C>T +AAAGGGCTCTCATAGG-1_5_146261080_C_A_+ AAAGGGCTCTCATAGG-1 5 146261080 C A + 1 1 C>A C>A +AAACCCACAATCTCTT-1_1_51095396_A_T_+ AAACCCACAATCTCTT-1 1 51095396 A T + 1 1 A>T A>T +AAAGTGACAACACAAA-1_17_39847426_T_C_+ AAAGTGACAACACAAA-1 17 39847426 T C + 1 1 T>C T>C +AAACCCACATTCTTCA-1_7_24978470_G_A_- AAACCCACATTCTTCA-1 7 24978470 G A - 1 1 G>A C>T +AAGACTCCAATTCTCT-1_17_39847403_T_G_+ AAGACTCCAATTCTCT-1 17 39847403 T G + 1 1 T>G T>G +AAACCCACACCGTGGT-1_15_100016267_C_A_+ AAACCCACACCGTGGT-1 15 100016267 C A + 1 1 C>A C>A +AACCAACCAAGTTGGG-1_17_39847391_C_T_+ AACCAACCAAGTTGGG-1 17 39847391 C T + 1 1 C>T C>T +AAAGGGCAGGACATCG-1_10_94563916_C_T_+ AAAGGGCAGGACATCG-1 10 94563916 C T + 1 1 C>T C>T +AACCAACGTGCCTAAT-1_16_57391454_T_C_+ AACCAACGTGCCTAAT-1 16 57391454 T C + 1 1 T>C T>C +AACCTGAAGCCTAACT-1_2_150832684_G_A_- AACCTGAAGCCTAACT-1 2 150832684 G A - 1 1 G>A C>T +AAAGGGCGTTCCAAAC-1_11_59205677_C_A_+ AAAGGGCGTTCCAAAC-1 11 59205677 C A + 1 1 C>A C>A +AAAGTCCGTGACTGTT-1_15_90933345_C_T_- AAAGTCCGTGACTGTT-1 15 90933345 C T - 1 1 C>T G>A +AACACACGTGTTGCCG-1_11_97396755_A_C_+ AACACACGTGTTGCCG-1 11 97396755 A C + 1 1 A>C A>C +AAAGTGAGTAGGTACG-1_9_57122001_G_A_+ AAAGTGAGTAGGTACG-1 9 57122001 G A + 1 1 G>A G>A +AACAACCGTAGCCCTG-1_9_3037754_T_G_- AACAACCGTAGCCCTG-1 9 3037754 T G - 1 1 T>G A>C +AACGTCAGTAGAGCTG-1_X_136838184_T_A_+ AACGTCAGTAGAGCTG-1 X 136838184 T A + 1 2 T>A T>A +AACCACATCGTCAGAT-1_X_136838138_C_A_+ AACCACATCGTCAGAT-1 X 136838138 C A + 1 3 C>A C>A +AAAGGGCAGGCATGCA-1_2_174346690_T_A_+ AAAGGGCAGGCATGCA-1 2 174346690 T A + 1 1 T>A T>A +AAGAACATCCAAAGGG-1_5_108434078_G_A_- AAGAACATCCAAAGGG-1 5 108434078 G A - 1 1 G>A C>T +AAGAACATCGAACACT-1_17_39847091_T_C_+ AAGAACATCGAACACT-1 17 39847091 T C + 1 1 T>C T>C +AACAAGAGTGGCGTAA-1_17_64281198_G_A_- AACAAGAGTGGCGTAA-1 17 64281198 G A - 1 1 G>A C>T +AAGACTCGTCAAGTTC-1_10_7625268_C_T_+ AAGACTCGTCAAGTTC-1 10 7625268 C T + 1 1 C>T C>T +AACCCAAAGAATTGTG-1_16_84954731_G_A_- AACCCAAAGAATTGTG-1 16 84954731 G A - 1 1 G>A C>T +AAACCCAGTCACCGCA-1_17_39846128_A_G_+ AAACCCAGTCACCGCA-1 17 39846128 A G + 1 1 A>G A>G +AAGACTCGTACAGTAA-1_5_146261080_C_A_+ AAGACTCGTACAGTAA-1 5 146261080 C A + 1 1 C>A C>A +AACCATGGTCATACCA-1_6_82647041_G_A_- AACCATGGTCATACCA-1 6 82647041 G A - 1 1 G>A C>T +AAACGAATCCCATGGG-1_2_5379332_A_T_- AAACGAATCCCATGGG-1 2 5379332 A T - 1 1 A>T T>A +AACGTCAGTGGGTCAA-1_6_36743394_G_T_- AACGTCAGTGGGTCAA-1 6 36743394 G T - 1 1 G>T C>A +AAAGGATAGATGAAGG-1_13_51135209_T_C_+ AAAGGATAGATGAAGG-1 13 51135209 T C + 1 1 T>C T>C +AACGTCATCTGGCTGG-1_13_24907669_G_A_- AACGTCATCTGGCTGG-1 13 24907669 G A - 1 1 G>A C>T +AAAGGGCCAGCGCTTG-1_5_29786093_C_T_+ AAAGGGCCAGCGCTTG-1 5 29786093 C T + 1 1 C>T C>T +AACGGGAAGTTACTCG-1_10_39850929_C_T_+ AACGGGAAGTTACTCG-1 10 39850929 C T + 1 1 C>T C>T +AAAGTCCCACAGTATC-1_17_39843289_C_T_+ AAAGTCCCACAGTATC-1 17 39843289 C T + 1 1 C>T C>T +AACGGGAGTTGTGCCG-1_19_43664152_G_A_- AACGGGAGTTGTGCCG-1 19 43664152 G A - 1 1 G>A C>T +AACCACAAGAGTTGTA-1_17_39848018_C_T_+ AACCACAAGAGTTGTA-1 17 39848018 C T + 2 2 C>T C>T +AAAGAACAGCCTGAAG-1_5_135934459_C_T_- AAAGAACAGCCTGAAG-1 5 135934459 C T - 1 1 C>T G>A +AAATGGAGTAGCGCCT-1_5_146261076_T_C_+ AAATGGAGTAGCGCCT-1 5 146261076 T C + 1 1 T>C T>C +AAGAACAGTTGGAGGT-1_5_146261004_G_C_+ AAGAACAGTTGGAGGT-1 5 146261004 G C + 1 1 G>C G>C +AACCACAAGCTTTGTG-1_14_102977134_G_A_- AACCACAAGCTTTGTG-1 14 102977134 G A - 1 1 G>A C>T +AACGTCAAGTTCGCAT-1_16_67199793_A_G_- AACGTCAAGTTCGCAT-1 16 67199793 A G - 1 1 A>G T>C +AAAGTCCCACAAATGA-1_15_77993654_T_A_- AAAGTCCCACAAATGA-1 15 77993654 T A - 1 1 T>A A>T +AACCTGAAGGTAAGTT-1_12_100207075_C_T_+ AACCTGAAGGTAAGTT-1 12 100207075 C T + 1 1 C>T C>T +AACCTGACAATAGTAG-1_10_60666640_A_G_- AACCTGACAATAGTAG-1 10 60666640 A G - 1 1 A>G T>C AAAGTCCCAACAACAA-1_19_47025121_T_C_+ AAAGTCCCAACAACAA-1 19 47025121 T C + 1 1 T>C T>C -AAAGGGCCAGCGACAA-1_19_9984933_T_C_+ AAAGGGCCAGCGACAA-1 19 9984933 T C + 1 1 T>C T>C -AAAGTGAAGGCATCGA-1_19_7215356_G_A_- AAAGTGAAGGCATCGA-1 19 7215356 G A - 1 1 G>A C>T -AAAGAACAGTAACAGT-1_19_5802287_G_T_- AAAGAACAGTAACAGT-1 19 5802287 G T - 1 2 G>T C>A -AAACCCACATATCTGG-1_19_5456852_A_G_- AAACCCACATATCTGG-1 19 5456852 A G - 1 1 A>G T>C -AAACGAAAGACAACAT-1_19_9984863_G_A_+ AAACGAAAGACAACAT-1 19 9984863 G A + 1 1 G>A G>A -AACGTCACACGCTGAC-1_19_5801948_C_G_- AACGTCACACGCTGAC-1 19 5801948 C G - 1 1 C>G G>C -AAGAACATCTCCGAAA-1_19_5802190_T_A_- AAGAACATCTCCGAAA-1 19 5802190 T A - 1 4 T>A A>T -AACGGGACAGTTGTTG-1_19_5799225_C_T_- AACGGGACAGTTGTTG-1 19 5799225 C T - 1 1 C>T G>A -AACCTGACATGAGATA-1_19_24294840_G_A_- AACCTGACATGAGATA-1 19 24294840 G A - 1 1 G>A C>T -AAGAACAGTTGGAGGT-1_19_5664744_A_G_- AAGAACAGTTGGAGGT-1 19 5664744 A G - 1 1 A>G T>C +AAACGCTCAGTAGGAC-1_9_56496811_C_T_+ AAACGCTCAGTAGGAC-1 9 56496811 C T + 1 1 C>T C>T +AACCACAAGCCTTTCC-1_7_84246323_A_G_- AACCACAAGCCTTTCC-1 7 84246323 A G - 1 1 A>G T>C +AAATGGACACCCGTAG-1_1_174542834_G_A_+ AAATGGACACCCGTAG-1 1 174542834 G A + 1 1 G>A G>A +AACACACAGTGCACAG-1_15_18862539_C_T_+ AACACACAGTGCACAG-1 15 18862539 C T + 1 1 C>T C>T +AACCACAGTACTCGTA-1_17_39848018_C_T_+ AACCACAGTACTCGTA-1 17 39848018 C T + 1 1 C>T C>T +AAATGGACAAGCGCAA-1_6_107570028_A_C_+ AAATGGACAAGCGCAA-1 6 107570028 A C + 1 1 A>C A>C +AACAAAGAGCCGATTT-1_6_46051089_T_A_+ AACAAAGAGCCGATTT-1 6 46051089 T A + 1 1 T>A T>A +AAAGAACAGCTAGATA-1_17_39848018_C_T_+ AAAGAACAGCTAGATA-1 17 39848018 C T + 1 1 C>T C>T +AAAGGGCAGTAAGCAT-1_14_78722110_A_C_- AAAGGGCAGTAAGCAT-1 14 78722110 A C - 1 1 A>C T>G +AACTTCTCATGAATAG-1_19_5080831_G_A_- AACTTCTCATGAATAG-1 19 5080831 G A - 1 1 G>A C>T +AACCAACGTAGGTAGC-1_4_124765094_A_T_+ AACCAACGTAGGTAGC-1 4 124765094 A T + 1 1 A>T A>T +AAAGTCCCACCACATA-1_7_4539874_G_A_- AAAGTCCCACCACATA-1 7 4539874 G A - 1 1 G>A C>T +AACCACAAGTGGACTG-1_12_99645645_A_G_+ AACCACAAGTGGACTG-1 12 99645645 A G + 1 1 A>G A>G +AAGATAGCAATAACGA-1_4_120102577_T_C_+ AAGATAGCAATAACGA-1 4 120102577 T C + 1 1 T>C T>C +AACAAGATCTATTTCG-1_12_3278877_G_T_- AACAAGATCTATTTCG-1 12 3278877 G T - 1 1 G>T C>A +AAAGGGCGTACCGTCG-1_4_152330115_C_T_+ AAAGGGCGTACCGTCG-1 4 152330115 C T + 1 1 C>T C>T +AAACGAAGTGTTTACG-1_17_39847184_A_G_+ AAACGAAGTGTTTACG-1 17 39847184 A G + 1 1 A>G A>G +AAAGGTATCCGGTAGC-1_9_3000579_A_G_- AAAGGTATCCGGTAGC-1 9 3000579 A G - 1 1 A>G T>C +AACACACTCGTAGCCG-1_12_78350923_A_C_+ AACACACTCGTAGCCG-1 12 78350923 A C + 1 1 A>C A>C +AAAGGTAAGGACAGTC-1_7_3404623_A_G_+ AAAGGTAAGGACAGTC-1 7 3404623 A G + 1 1 A>G A>G +AAGAACAAGTCTCTGA-1_9_3006345_A_C_+ AAGAACAAGTCTCTGA-1 9 3006345 A C + 1 1 A>C A>C +AACAGGGGTTACGATC-1_17_39847058_C_A_+ AACAGGGGTTACGATC-1 17 39847058 C A + 1 1 C>A C>A +AAAGGGCAGTAAGCAT-1_8_127204547_C_G_+ AAAGGGCAGTAAGCAT-1 8 127204547 C G + 1 1 C>G C>G +AAGAACACAACTGATC-1_10_128490943_A_G_- AAGAACACAACTGATC-1 10 128490943 A G - 1 1 A>G T>C +AAACGAAGTGTGAATA-1_3_104655777_C_T_+ AAACGAAGTGTGAATA-1 3 104655777 C T + 1 1 C>T C>T +AAAGGGCAGACTACCT-1_11_4737060_G_A_- AAAGGGCAGACTACCT-1 11 4737060 G A - 1 1 G>A C>T +AACGTCAAGCGAGGAG-1_8_64592573_A_T_- AACGTCAAGCGAGGAG-1 8 64592573 A T - 1 1 A>T T>A +AAGAACAGTTGCTCCT-1_2_148871922_G_A_- AAGAACAGTTGCTCCT-1 2 148871922 G A - 1 2 G>A C>T +AACAAAGCACGGCACT-1_4_43032504_G_T_- AACAAAGCACGGCACT-1 4 43032504 G T - 1 1 G>T C>A +AACAACCGTACTCAAC-1_4_130337167_C_T_- AACAACCGTACTCAAC-1 4 130337167 C T - 1 1 C>T G>A +AACCACATCAAAGGTA-1_4_48662859_C_T_+ AACCACATCAAAGGTA-1 4 48662859 C T + 1 1 C>T C>T +AAAGGGCTCTCACTCG-1_10_100070565_G_A_+ AAAGGGCTCTCACTCG-1 10 100070565 G A + 1 1 G>A G>A +AACCATGAGGTGCATG-1_9_121490008_T_G_- AACCATGAGGTGCATG-1 9 121490008 T G - 1 1 T>G A>C +AAACGAAAGGTAGTCG-1_5_65389099_T_C_- AAACGAAAGGTAGTCG-1 5 65389099 T C - 1 1 T>C A>G +AACACACAGTGCACAG-1_9_70554621_A_C_+ AACACACAGTGCACAG-1 9 70554621 A C + 1 1 A>C A>C +AAATGGAAGTTTCGGT-1_16_6226998_A_G_+ AAATGGAAGTTTCGGT-1 16 6226998 A G + 1 1 A>G A>G +AACGGGAAGTTGCCCG-1_9_121490014_G_A_- AACGGGAAGTTGCCCG-1 9 121490014 G A - 1 1 G>A C>T +AAACGAAAGGTAGTCG-1_16_96467770_A_G_+ AAACGAAAGGTAGTCG-1 16 96467770 A G + 1 1 A>G A>G +AAGATAGCAGCTTCCT-1_6_54642858_T_C_+ AAGATAGCAGCTTCCT-1 6 54642858 T C + 1 1 T>C T>C +AACAACCAGTAATACG-1_12_109561862_C_G_+ AACAACCAGTAATACG-1 12 109561862 C G + 1 1 C>G C>G +AAACCCACATTCTTCA-1_7_24978392_G_A_- AAACCCACATTCTTCA-1 7 24978392 G A - 1 1 G>A C>T +AAGACTCGTGGCTAGA-1_17_26972368_C_T_+ AAGACTCGTGGCTAGA-1 17 26972368 C T + 1 1 C>T C>T +AAAGGGCAGTAAGCAT-1_11_101445516_T_A_+ AAAGGGCAGTAAGCAT-1 11 101445516 T A + 1 1 T>A T>A +AACCACATCGGAGATG-1_11_55450565_G_A_- AACCACATCGGAGATG-1 11 55450565 G A - 1 1 G>A C>T +AAAGTCCAGTCGGCCT-1_6_60731850_G_A_- AAAGTCCAGTCGGCCT-1 6 60731850 G A - 1 1 G>A C>T +AAGACAATCGCGAAGA-1_9_50756436_C_T_+ AAGACAATCGCGAAGA-1 9 50756436 C T + 1 1 C>T C>T +AAACGCTGTCATGGCC-1_6_11900533_G_A_- AAACGCTGTCATGGCC-1 6 11900533 G A - 1 1 G>A C>T +AAGAACAGTAAGATAC-1_11_57044893_G_A_+ AAGAACAGTAAGATAC-1 11 57044893 G A + 1 1 G>A G>A +AAGACTCCACCGGTCA-1_16_57391454_T_C_+ AAGACTCCACCGGTCA-1 16 57391454 T C + 1 1 T>C T>C +AACACACTCGCTCTAC-1_2_73093221_G_A_- AACACACTCGCTCTAC-1 2 73093221 G A - 1 1 G>A C>T +AAACCCATCAAGCCAT-1_17_39847403_T_G_+ AAACCCATCAAGCCAT-1 17 39847403 T G + 1 1 T>G T>G +AACTTCTTCGACCACG-1_13_95024730_C_T_- AACTTCTTCGACCACG-1 13 95024730 C T - 1 1 C>T G>A +AAATGGAGTACCGGAA-1_19_9984883_G_T_+ AAATGGAGTACCGGAA-1 19 9984883 G T + 1 1 G>T G>T +AACCTGACATCGTCCT-1_10_93241230_C_T_+ AACCTGACATCGTCCT-1 10 93241230 C T + 1 1 C>T C>T +AACAAAGTCCCGTTGT-1_18_6454830_G_T_- AACAAAGTCCCGTTGT-1 18 6454830 G T - 1 1 G>T C>A +AAACGCTTCCACCTCA-1_8_9991967_C_T_+ AAACGCTTCCACCTCA-1 8 9991967 C T + 1 1 C>T C>T +AACGAAATCTTGAACG-1_10_127088424_A_T_+ AACGAAATCTTGAACG-1 10 127088424 A T + 1 1 A>T A>T +AAAGGGCAGTAAGCAT-1_4_116069891_A_G_- AAAGGGCAGTAAGCAT-1 4 116069891 A G - 1 1 A>G T>C +AAAGTGAAGGCATCGA-1_2_180904379_G_A_- AAAGTGAAGGCATCGA-1 2 180904379 G A - 1 1 G>A C>T +AAAGGGCAGGACATCG-1_10_94563902_T_G_+ AAAGGGCAGGACATCG-1 10 94563902 T G + 1 1 T>G T>G +AAACCCATCGGATAAA-1_11_62553007_A_G_+ AAACCCATCGGATAAA-1 11 62553007 A G + 1 1 A>G A>G +AACAAGAGTAGTCTTG-1_5_142903137_C_T_- AACAAGAGTAGTCTTG-1 5 142903137 C T - 1 1 C>T G>A +AACCCAAGTATCGATC-1_5_103143253_A_G_- AACCCAAGTATCGATC-1 5 103143253 A G - 1 1 A>G T>C +AACCATGCATTGCCTC-1_17_39847426_T_C_- AACCATGCATTGCCTC-1 17 39847426 T C - 1 1 T>C A>G +AAAGAACAGTAACAGT-1_6_146602457_C_G_- AAAGAACAGTAACAGT-1 6 146602457 C G - 1 1 C>G G>C +AACAACCTCGCAGATT-1_19_60525722_G_A_- AACAACCTCGCAGATT-1 19 60525722 G A - 1 1 G>A C>T +AACGGGATCTCGAGTA-1_15_25363477_T_A_- AACGGGATCTCGAGTA-1 15 25363477 T A - 1 1 T>A A>T +AAAGGATCACGTAGTT-1_15_74750492_T_A_- AAAGGATCACGTAGTT-1 15 74750492 T A - 1 1 T>A A>T +AAAGGATGTAAGATTG-1_16_4617144_G_C_- AAAGGATGTAAGATTG-1 16 4617144 G C - 1 1 G>C C>G +AAACCCAAGGTAGACC-1_16_57391680_C_T_- AAACCCAAGGTAGACC-1 16 57391680 C T - 1 1 C>T G>A +AAAGGTAGTATGCTAC-1_8_109724896_C_A_+ AAAGGTAGTATGCTAC-1 8 109724896 C A + 1 1 C>A C>A +AACACACGTGTTGCCG-1_11_117123140_G_A_+ AACACACGTGTTGCCG-1 11 117123140 G A + 1 1 G>A G>A +AACCAACAGCGAAACC-1_7_28352245_G_T_+ AACCAACAGCGAAACC-1 7 28352245 G T + 1 1 G>T G>T +AAGATAGAGTCATCCA-1_6_84618768_G_A_- AAGATAGAGTCATCCA-1 6 84618768 G A - 1 1 G>A C>T +AAACGAAGTGTTTACG-1_17_33838134_C_T_+ AAACGAAGTGTTTACG-1 17 33838134 C T + 1 1 C>T C>T +AACAACCGTATGTCTG-1_2_26328230_A_C_+ AACAACCGTATGTCTG-1 2 26328230 A C + 1 1 A>C A>C +AAGAACAGTTGCTCCT-1_17_33829799_A_C_+ AAGAACAGTTGCTCCT-1 17 33829799 A C + 1 1 A>C A>C +AAAGTCCTCCCAGCGA-1_2_119907981_C_A_+ AAAGTCCTCCCAGCGA-1 2 119907981 C A + 1 1 C>A C>A +AACCTTTTCACAGAGG-1_6_56701180_A_G_- AACCTTTTCACAGAGG-1 6 56701180 A G - 1 1 A>G T>C +AAGACAACATGACAAA-1_18_59076934_G_A_+ AAGACAACATGACAAA-1 18 59076934 G A + 1 1 G>A G>A +AACCACAAGCTTTGTG-1_2_32963533_T_C_+ AACCACAAGCTTTGTG-1 2 32963533 T C + 1 1 T>C T>C +AACAAAGAGGCATCAG-1_2_98662879_A_G_+ AACAAAGAGGCATCAG-1 2 98662879 A G + 1 1 A>G A>G +AAACGCTCAGTAGGAC-1_19_7215253_G_A_- AAACGCTCAGTAGGAC-1 19 7215253 G A - 1 1 G>A C>T +AACGGGAGTTGTGCCG-1_19_5802077_A_G_- AACGGGAGTTGTGCCG-1 19 5802077 A G - 1 1 A>G T>C +AACGTCACACGAGGTA-1_12_111669649_C_T_- AACGTCACACGAGGTA-1 12 111669649 C T - 1 1 C>T G>A +AACCAACAGTCTGCGC-1_4_85334967_C_G_+ AACCAACAGTCTGCGC-1 4 85334967 C G + 1 1 C>G C>G +AACCAACGTCCCTGTT-1_18_64534511_G_A_- AACCAACGTCCCTGTT-1 18 64534511 G A - 1 1 G>A C>T +AACCTGACATCGTCCT-1_X_47957874_A_G_+ AACCTGACATCGTCCT-1 X 47957874 A G + 1 1 A>G A>G +AAATGGAAGCAGATAT-1_11_90278436_C_T_+ AAATGGAAGCAGATAT-1 11 90278436 C T + 1 1 C>T C>T +AAAGGATAGACTCAAA-1_17_39847458_A_G_- AAAGGATAGACTCAAA-1 17 39847458 A G - 1 1 A>G T>C +AAAGGGCCAACACAGG-1_4_109386922_A_G_+ AAAGGGCCAACACAGG-1 4 109386922 A G + 1 1 A>G A>G +AAAGGATCACTGTTCC-1_4_156199796_T_G_- AAAGGATCACTGTTCC-1 4 156199796 T G - 1 1 T>G A>C +AACGAAATCCTGTAAG-1_11_101063500_T_A_+ AACGAAATCCTGTAAG-1 11 101063500 T A + 1 1 T>A T>A +AACTTCTAGGGATCTG-1_19_5107937_C_G_- AACTTCTAGGGATCTG-1 19 5107937 C G - 1 1 C>G G>C +AAACCCATCAAGCCAT-1_14_65981323_A_G_+ AAACCCATCAAGCCAT-1 14 65981323 A G + 1 1 A>G A>G +AAATGGAGTAGCGCCT-1_5_146261080_C_A_+ AAATGGAGTAGCGCCT-1 5 146261080 C A + 1 1 C>A C>A +AAACCCACAGCTGTGC-1_11_90278436_C_T_+ AAACCCACAGCTGTGC-1 11 90278436 C T + 1 1 C>T C>T +AAGAACAGTAACAGGC-1_16_57391679_G_T_- AAGAACAGTAACAGGC-1 16 57391679 G T - 1 1 G>T C>A +AACGGGATCTGTGCTC-1_10_86179000_C_G_- AACGGGATCTGTGCTC-1 10 86179000 C G - 1 1 C>G G>C +AAACGAAGTTCATCTT-1_11_32297202_C_T_+ AAACGAAGTTCATCTT-1 11 32297202 C T + 1 1 C>T C>T +AAACGCTAGGTTACAA-1_14_76416198_C_T_+ AAACGCTAGGTTACAA-1 14 76416198 C T + 1 1 C>T C>T +AAATGGAGTACCGGAA-1_6_99222139_G_A_- AAATGGAGTACCGGAA-1 6 99222139 G A - 1 1 G>A C>T +AACTTCTCATGAATAG-1_3_35959805_T_A_- AACTTCTCATGAATAG-1 3 35959805 T A - 1 1 T>A A>T +AACTTCTCACACGTGC-1_14_54940637_G_T_+ AACTTCTCACACGTGC-1 14 54940637 G T + 1 1 G>T G>T +AACAACCAGTAATACG-1_9_110231538_T_A_+ AACAACCAGTAATACG-1 9 110231538 T A + 1 1 T>A T>A +AAACCCAGTAGGACTG-1_5_24565426_G_A_- AAACCCAGTAGGACTG-1 5 24565426 G A - 1 1 G>A C>T +AAAGGGCCATGTCTAG-1_5_14589932_G_A_+ AAAGGGCCATGTCTAG-1 5 14589932 G A + 1 1 G>A G>A +AACACACGTGTTGCCG-1_1_30865832_A_C_- AACACACGTGTTGCCG-1 1 30865832 A C - 1 1 A>C T>G +AAGACAAAGAGTTCGG-1_16_43619138_C_A_+ AAGACAAAGAGTTCGG-1 16 43619138 C A + 1 1 C>A C>A +AAAGGATTCTAGGCAT-1_16_9811057_A_G_- AAAGGATTCTAGGCAT-1 16 9811057 A G - 1 1 A>G T>C +AACGTCAAGCTGAAGC-1_5_146261122_A_G_+ AACGTCAAGCTGAAGC-1 5 146261122 A G + 1 1 A>G A>G +AAGAACAGTACGTAGG-1_17_39847607_T_C_+ AAGAACAGTACGTAGG-1 17 39847607 T C + 1 1 T>C T>C +AACCACAAGATGCTTC-1_3_109027601_C_G_- AACCACAAGATGCTTC-1 3 109027601 C G - 1 1 C>G G>C +AACCACAAGCTTTGTG-1_5_33027846_C_T_+ AACCACAAGCTTTGTG-1 5 33027846 C T + 1 1 C>T C>T +AACCCAACACAATCTG-1_17_39848018_C_T_+ AACCCAACACAATCTG-1 17 39848018 C T + 1 1 C>T C>T +AACAAGAGTAGTCTTG-1_15_88865501_G_A_+ AACAAGAGTAGTCTTG-1 15 88865501 G A + 1 1 G>A G>A +AAATGGACAAGCGCAA-1_15_38076941_T_C_- AAATGGACAAGCGCAA-1 15 38076941 T C - 1 1 T>C A>G +AAGACAAGTAACAGTA-1_17_56279785_G_A_- AAGACAAGTAACAGTA-1 17 56279785 G A - 1 1 G>A C>T +AACCTTTTCCTAGCGG-1_16_98010740_C_T_+ AACCTTTTCCTAGCGG-1 16 98010740 C T + 1 1 C>T C>T +AACCATGAGGTGCATG-1_9_111278973_A_G_+ AACCATGAGGTGCATG-1 9 111278973 A G + 1 1 A>G A>G +AACAGGGTCAAGCCTA-1_4_47469867_G_A_- AACAGGGTCAAGCCTA-1 4 47469867 G A - 1 1 G>A C>T +AAAGGTAGTATGCTAC-1_2_25291309_G_A_- AAAGGTAGTATGCTAC-1 2 25291309 G A - 1 1 G>A C>T +AAACGAACAAACGGCA-1_9_3028829_G_T_- AAACGAACAAACGGCA-1 9 3028829 G T - 1 1 G>T C>A +AAACGCTAGGTAGGCT-1_6_86378873_C_T_+ AAACGCTAGGTAGGCT-1 6 86378873 C T + 1 1 C>T C>T +AAAGTCCTCCTACAAG-1_2_148872825_G_A_- AAAGTCCTCCTACAAG-1 2 148872825 G A - 1 1 G>A C>T +AACCTTTTCAGTCAGT-1_9_3035191_C_G_- AACCTTTTCAGTCAGT-1 9 3035191 C G - 1 1 C>G G>C +AAAGGGCTCATAGGCT-1_3_121450003_G_T_+ AAAGGGCTCATAGGCT-1 3 121450003 G T + 1 1 G>T G>T +AACCAACTCAGTGGGA-1_4_117154729_T_C_- AACCAACTCAGTGGGA-1 4 117154729 T C - 1 1 T>C A>G +AACAAAGGTATCGCGC-1_17_39847607_T_C_+ AACAAAGGTATCGCGC-1 17 39847607 T C + 1 1 T>C T>C +AAATGGACATGCCGAC-1_13_12440314_G_A_- AAATGGACATGCCGAC-1 13 12440314 G A - 1 1 G>A C>T +AAAGGTAGTACACGCC-1_17_39848018_C_T_+ AAAGGTAGTACACGCC-1 17 39848018 C T + 1 1 C>T C>T +AACCAACCAGTCTTCC-1_17_39848018_C_T_+ AACCAACCAGTCTTCC-1 17 39848018 C T + 2 2 C>T C>T +AAACCCACATATCTGG-1_19_40550455_T_C_- AAACCCACATATCTGG-1 19 40550455 T C - 1 1 T>C A>G +AAACGCTGTCATGGCC-1_8_45814893_A_T_- AAACGCTGTCATGGCC-1 8 45814893 A T - 1 1 A>T T>A +AAGACAAGTCGAATTC-1_17_39847403_T_G_+ AAGACAAGTCGAATTC-1 17 39847403 T G + 1 1 T>G T>G +AAGATAGGTCATCAGT-1_11_46194011_G_A_- AAGATAGGTCATCAGT-1 11 46194011 G A - 1 1 G>A C>T +AACACACCATAACGGG-1_11_48806023_A_G_+ AACACACCATAACGGG-1 11 48806023 A G + 1 1 A>G A>G +AAACCCAGTATGTCCA-1_16_57391685_G_A_- AAACCCAGTATGTCCA-1 16 57391685 G A - 1 1 G>A C>T +AAGACTCTCCATAGAC-1_9_79769152_G_A_- AAGACTCTCCATAGAC-1 9 79769152 G A - 1 1 G>A C>T +AACGGGAGTTTGGCTA-1_12_87042022_T_C_+ AACGGGAGTTTGGCTA-1 12 87042022 T C + 1 1 T>C T>C +AACCAACGTTTCGTGA-1_12_8938483_T_C_+ AACCAACGTTTCGTGA-1 12 8938483 T C + 1 1 T>C T>C +AAAGGGCCAACCAATC-1_13_97190543_G_C_- AAAGGGCCAACCAATC-1 13 97190543 G C - 1 1 G>C C>G +AAATGGAAGTGCGTCC-1_6_21442650_T_C_+ AAATGGAAGTGCGTCC-1 6 21442650 T C + 1 1 T>C T>C +AACCCAAAGAATTGTG-1_3_146419229_T_C_+ AACCCAAAGAATTGTG-1 3 146419229 T C + 1 1 T>C T>C +AAACCCACACTGAGGA-1_11_29545904_G_A_- AAACCCACACTGAGGA-1 11 29545904 G A - 1 1 G>A C>T +AAATGGAAGTTCAACC-1_9_121490021_T_C_- AAATGGAAGTTCAACC-1 9 121490021 T C - 1 1 T>C A>G +AAACGAAGTTCATCTT-1_11_54639773_C_A_+ AAACGAAGTTCATCTT-1 11 54639773 C A + 1 1 C>A C>A +AACGGGAAGCAGCCCT-1_5_146261122_A_G_+ AACGGGAAGCAGCCCT-1 5 146261122 A G + 1 1 A>G A>G +AACCCAAGTATCGATC-1_14_67014726_A_G_- AACCCAAGTATCGATC-1 14 67014726 A G - 1 1 A>G T>C +AAAGGATAGTCCTGTA-1_8_111719491_C_T_- AAAGGATAGTCCTGTA-1 8 111719491 C T - 1 1 C>T G>A +AAAGGATAGTCCTGTA-1_19_5802655_T_C_- AAAGGATAGTCCTGTA-1 19 5802655 T C - 1 2 T>C A>G +AAACGAACAAGATTGA-1_2_150633076_C_T_- AAACGAACAAGATTGA-1 2 150633076 C T - 1 1 C>T G>A +AACAGGGGTCGTGATT-1_2_98662293_G_T_+ AACAGGGGTCGTGATT-1 2 98662293 G T + 1 1 G>T G>T +AACTTCTAGATACGAT-1_12_32976516_A_T_+ AACTTCTAGATACGAT-1 12 32976516 A T + 1 1 A>T A>T +AACCAACCACGGTAGA-1_1_42701312_A_G_+ AACCAACCACGGTAGA-1 1 42701312 A G + 1 1 A>G A>G +AAACGAACAACTGGTT-1_9_82945456_T_C_- AAACGAACAACTGGTT-1 9 82945456 T C - 1 1 T>C A>G +AACTTCTCACTAACGT-1_6_67284112_C_A_+ AACTTCTCACTAACGT-1 6 67284112 C A + 1 1 C>A C>A +AACTTCTTCTTCCCGA-1_9_3014273_T_A_- AACTTCTTCTTCCCGA-1 9 3014273 T A - 1 1 T>A A>T +AAACGAAAGGTAGTCG-1_19_41213984_T_C_- AAACGAAAGGTAGTCG-1 19 41213984 T C - 1 1 T>C A>G +AAGACAAAGGGCAGGA-1_2_98666956_C_T_- AAGACAAAGGGCAGGA-1 2 98666956 C T - 1 1 C>T G>A +AAACCCAGTGGTAATA-1_7_19696636_C_A_- AAACCCAGTGGTAATA-1 7 19696636 C A - 1 1 C>A G>T +AACGGGAAGTTGCCCG-1_7_3401359_A_G_+ AACGGGAAGTTGCCCG-1 7 3401359 A G + 1 1 A>G A>G +AACAAAGGTGTAGTGG-1_4_148617037_A_G_- AACAAAGGTGTAGTGG-1 4 148617037 A G - 1 1 A>G T>C +AAACCCACATATCTGG-1_12_109571632_C_T_+ AAACCCACATATCTGG-1 12 109571632 C T + 1 1 C>T C>T +AACAGGGCAGATTTCG-1_19_4113547_T_C_+ AACAGGGCAGATTTCG-1 19 4113547 T C + 1 1 T>C T>C +AACCACACAATCTGCA-1_11_69823293_G_A_- AACCACACAATCTGCA-1 11 69823293 G A - 1 1 G>A C>T +AACGGGACAGTTGTTG-1_12_66671759_G_A_- AACGGGACAGTTGTTG-1 12 66671759 G A - 1 1 G>A C>T +AAGATAGGTCATCAGT-1_14_69785956_A_C_- AAGATAGGTCATCAGT-1 14 69785956 A C - 1 1 A>C T>G +AAACGCTCATTCACCC-1_11_29374368_T_A_+ AAACGCTCATTCACCC-1 11 29374368 T A + 1 1 T>A T>A +AAGACTCCACCCGTAG-1_17_39848018_C_T_+ AAGACTCCACCCGTAG-1 17 39848018 C T + 1 1 C>T C>T +AAAGAACCAAATTAGG-1_15_75565023_G_C_- AAAGAACCAAATTAGG-1 15 75565023 G C - 1 1 G>C C>G +AAAGTCCAGTATAACG-1_9_75565805_A_C_- AAAGTCCAGTATAACG-1 9 75565805 A C - 1 1 A>C T>G +AACACACCAGACCAGA-1_12_69159082_G_A_- AACACACCAGACCAGA-1 12 69159082 G A - 1 1 G>A C>T +AACCAACGTAGGTAGC-1_17_39848018_C_T_+ AACCAACGTAGGTAGC-1 17 39848018 C T + 1 1 C>T C>T +AACCAACGTTCTAAGC-1_10_41889304_C_T_+ AACCAACGTTCTAAGC-1 10 41889304 C T + 1 1 C>T C>T +AAAGGGCCAGCGACCT-1_11_87124422_C_T_+ AAAGGGCCAGCGACCT-1 11 87124422 C T + 1 1 C>T C>T +AAGACTCAGAAATTCG-1_16_57391677_C_G_- AAGACTCAGAAATTCG-1 16 57391677 C G - 1 1 C>G G>C +AACGGGAAGCATACTC-1_5_146261113_T_C_+ AACGGGAAGCATACTC-1 5 146261113 T C + 1 1 T>C T>C +AACCTGATCTAGTACG-1_17_90981757_T_C_- AACCTGATCTAGTACG-1 17 90981757 T C - 1 1 T>C A>G +AAACGCTAGGCCTGCT-1_11_117159081_T_G_+ AAACGCTAGGCCTGCT-1 11 117159081 T G + 1 1 T>G T>G +AAACGAAAGTCGCGAA-1_X_136838141_T_C_+ AAACGAAAGTCGCGAA-1 X 136838141 T C + 1 1 T>C T>C +AAAGGGCCAACCAATC-1_18_64499756_G_T_- AAAGGGCCAACCAATC-1 18 64499756 G T - 1 1 G>T C>A +AAAGGTATCGCGTGAC-1_16_57391454_T_C_+ AAAGGTATCGCGTGAC-1 16 57391454 T C + 1 1 T>C T>C +AACCTGAAGTCCCAGC-1_2_144142638_G_A_- AACCTGAAGTCCCAGC-1 2 144142638 G A - 1 1 G>A C>T +AAACCCAGTTTCGTAG-1_X_36198920_C_T_+ AAACCCAGTTTCGTAG-1 X 36198920 C T + 1 1 C>T C>T +AACTTCTAGCAGATAT-1_X_38572819_C_G_- AACTTCTAGCAGATAT-1 X 38572819 C G - 1 1 C>G G>C +AACCTTTAGCGTGCTC-1_1_180432542_G_A_- AACCTTTAGCGTGCTC-1 1 180432542 G A - 1 1 G>A C>T +AACCACAAGACTTGTC-1_17_24721175_T_C_+ AACCACAAGACTTGTC-1 17 24721175 T C + 1 1 T>C T>C +AAAGGGCAGTAAGCAT-1_16_17086226_C_T_+ AAAGGGCAGTAAGCAT-1 16 17086226 C T + 1 1 C>T C>T +AAGACTCAGGGAGATA-1_9_3037748_A_T_- AAGACTCAGGGAGATA-1 9 3037748 A T - 1 1 A>T T>A +AACTTCTAGGGATCTG-1_11_57326931_A_G_+ AACTTCTAGGGATCTG-1 11 57326931 A G + 1 1 A>G A>G +AAACCCACACCGTGGT-1_10_81264921_G_A_- AAACCCACACCGTGGT-1 10 81264921 G A - 1 1 G>A C>T +AACCAACAGAGGACTC-1_10_83722959_C_A_+ AACCAACAGAGGACTC-1 10 83722959 C A + 1 1 C>A C>A +AAGAACACACTAGGTT-1_3_90213215_G_A_- AAGAACACACTAGGTT-1 3 90213215 G A - 1 1 G>A C>T +AAAGGGCCAACACAGG-1_1_128279217_T_A_+ AAAGGGCCAACACAGG-1 1 128279217 T A + 1 1 T>A T>A +AAACGCTCAGTAGGAC-1_9_78478632_G_A_- AAACGCTCAGTAGGAC-1 9 78478632 G A - 1 1 G>A C>T +AACCTTTCATTGAAAG-1_17_39848018_C_T_+ AACCTTTCATTGAAAG-1 17 39848018 C T + 2 2 C>T C>T +AAACGCTTCTGCTTAT-1_3_52001600_T_G_- AAACGCTTCTGCTTAT-1 3 52001600 T G - 1 1 T>G A>C +AAGACAATCGATTGGT-1_18_69344468_G_C_+ AAGACAATCGATTGGT-1 18 69344468 G C + 1 1 G>C G>C +AACCTGATCGTGCTCT-1_7_88115256_T_A_+ AACCTGATCGTGCTCT-1 7 88115256 T A + 1 1 T>A T>A +AACAACCAGACGACTG-1_17_39847178_G_C_+ AACAACCAGACGACTG-1 17 39847178 G C + 1 1 G>C G>C +AAGAACAAGCTCGACC-1_12_77283308_C_T_+ AAGAACAAGCTCGACC-1 12 77283308 C T + 1 1 C>T C>T +AAGATAGGTCATCAGT-1_19_6906932_T_C_- AAGATAGGTCATCAGT-1 19 6906932 T C - 1 1 T>C A>G +AAAGGGCCACACTTAG-1_9_40785059_G_A_+ AAAGGGCCACACTTAG-1 9 40785059 G A + 1 1 G>A G>A +AAAGTCCTCCACTGAA-1_6_114317400_C_T_+ AAAGTCCTCCACTGAA-1 6 114317400 C T + 1 1 C>T C>T +AAACCCACAAAGACGC-1_17_29100518_C_A_+ AAACCCACAAAGACGC-1 17 29100518 C A + 1 1 C>A C>A +AACGGGACATGGGCAA-1_9_3000527_T_C_- AACGGGACATGGGCAA-1 9 3000527 T C - 1 1 T>C A>G +AACAAGAGTAGTCTTG-1_17_39847403_T_G_+ AACAAGAGTAGTCTTG-1 17 39847403 T G + 1 1 T>G T>G +AACTTCTAGCAGATAT-1_3_5278312_C_A_+ AACTTCTAGCAGATAT-1 3 5278312 C A + 1 1 C>A C>A +AAACGAAGTGTTTACG-1_17_39848018_C_T_+ AAACGAAGTGTTTACG-1 17 39848018 C T + 1 1 C>T C>T +AACGGGAGTGTCATTG-1_9_3035192_T_C_- AACGGGAGTGTCATTG-1 9 3035192 T C - 1 1 T>C A>G +AAACCCAAGGTAGACC-1_16_57391685_G_A_- AAACCCAAGGTAGACC-1 16 57391685 G A - 1 1 G>A C>T +AACTTCTAGCAGATAT-1_6_12077885_A_G_+ AACTTCTAGCAGATAT-1 6 12077885 A G + 1 1 A>G A>G +AAACCCACAGCTGTGC-1_9_64709084_C_T_+ AAACCCACAGCTGTGC-1 9 64709084 C T + 1 1 C>T C>T +AACCTGACAAACCACT-1_7_67107844_A_G_+ AACCTGACAAACCACT-1 7 67107844 A G + 1 1 A>G A>G +AAATGGAAGCAGATAT-1_17_25828486_G_A_+ AAATGGAAGCAGATAT-1 17 25828486 G A + 1 1 G>A G>A +AACGTCATCTACTTCA-1_9_3027207_A_T_- AACGTCATCTACTTCA-1 9 3027207 A T - 1 1 A>T T>A +AACACACTCGCCTAGG-1_4_155625336_T_A_+ AACACACTCGCCTAGG-1 4 155625336 T A + 1 1 T>A T>A +AACCAACGTAACAGGC-1_7_3620002_G_A_+ AACCAACGTAACAGGC-1 7 3620002 G A + 1 1 G>A G>A +AAAGTGAAGCCATATC-1_5_31054349_G_A_+ AAAGTGAAGCCATATC-1 5 31054349 G A + 1 1 G>A G>A +AACGTCAAGCGAGGAG-1_10_80403108_G_A_- AACGTCAAGCGAGGAG-1 10 80403108 G A - 1 1 G>A C>T +AACAACCCAGACGGAT-1_6_28426568_C_T_+ AACAACCCAGACGGAT-1 6 28426568 C T + 1 1 C>T C>T +AACCACATCGGAGATG-1_9_95979127_T_G_+ AACCACATCGGAGATG-1 9 95979127 T G + 1 1 T>G T>G +AACACACAGTGCACAG-1_9_70554625_T_G_+ AACACACAGTGCACAG-1 9 70554625 T G + 1 1 T>G T>G +AACCTGAAGGTCATTC-1_8_85260609_G_A_- AACCTGAAGGTCATTC-1 8 85260609 G A - 1 1 G>A C>T +AACCACAAGGACAGCT-1_1_55078064_G_A_- AACCACAAGGACAGCT-1 1 55078064 G A - 1 1 G>A C>T +AAAGTCCTCCGATGCG-1_12_99271585_C_T_- AAAGTCCTCCGATGCG-1 12 99271585 C T - 1 1 C>T G>A +AAGACTCCACATACTG-1_13_14625423_C_T_+ AAGACTCCACATACTG-1 13 14625423 C T + 1 1 C>T C>T +AAAGGGCTCTCATAGG-1_5_146261076_T_C_+ AAAGGGCTCTCATAGG-1 5 146261076 T C + 1 1 T>C T>C +AAAGTCCGTGGGTCAA-1_2_5379332_A_T_- AAAGTCCGTGGGTCAA-1 2 5379332 A T - 1 1 A>T T>A +AACCAACTCATATGGC-1_14_70583445_C_A_- AACCAACTCATATGGC-1 14 70583445 C A - 1 1 C>A G>T +AAGAACAAGGTCGAGT-1_9_3024475_C_G_- AAGAACAAGGTCGAGT-1 9 3024475 C G - 1 1 C>G G>C +AACAGGGCAAACTCGT-1_14_21086406_T_C_+ AACAGGGCAAACTCGT-1 14 21086406 T C + 1 1 T>C T>C +AACAAGAGTTCTCACC-1_16_57391679_G_T_- AACAAGAGTTCTCACC-1 16 57391679 G T - 1 1 G>T C>A +AACACACGTTTGTTCT-1_2_4223898_G_A_+ AACACACGTTTGTTCT-1 2 4223898 G A + 1 1 G>A G>A +AACGTCACAAAGAGTT-1_1_153292374_C_T_- AACGTCACAAAGAGTT-1 1 153292374 C T - 1 1 C>T G>A +AACGTCACAAGAATGT-1_2_117180869_T_C_+ AACGTCACAAGAATGT-1 2 117180869 T C + 1 1 T>C T>C +AACAAAGAGGCATCAG-1_17_39848018_C_T_+ AACAAAGAGGCATCAG-1 17 39848018 C T + 1 1 C>T C>T +AACCAACCAGATCCAT-1_7_126780161_G_T_+ AACCAACCAGATCCAT-1 7 126780161 G T + 1 1 G>T G>T +AAACGAAGTGTTTACG-1_14_84536621_T_G_+ AAACGAAGTGTTTACG-1 14 84536621 T G + 1 1 T>G T>G +AAGACAAGTCGAATTC-1_5_33027729_C_T_+ AAGACAAGTCGAATTC-1 5 33027729 C T + 1 1 C>T C>T +AACCCAACAAGGATGC-1_9_3024436_T_A_- AACCCAACAAGGATGC-1 9 3024436 T A - 1 1 T>A A>T +AAAGGGCTCTCATAGG-1_X_53021505_A_G_+ AAAGGGCTCTCATAGG-1 X 53021505 A G + 1 1 A>G A>G +AACGGGATCTTCCCGA-1_5_146261122_A_G_+ AACGGGATCTTCCCGA-1 5 146261122 A G + 1 1 A>G A>G +AACCAACCAGTCGCTG-1_3_95059755_G_A_- AACCAACCAGTCGCTG-1 3 95059755 G A - 1 1 G>A C>T +AACTTCTCACTAACGT-1_9_44408808_T_C_+ AACTTCTCACTAACGT-1 9 44408808 T C + 1 1 T>C T>C +AAAGGTACAGTCTCTC-1_7_28352648_C_T_+ AAAGGTACAGTCTCTC-1 7 28352648 C T + 1 1 C>T C>T +AAAGGATAGGTTCCAT-1_17_39847876_G_A_+ AAAGGATAGGTTCCAT-1 17 39847876 G A + 1 1 G>A G>A +AAGAACACACTAGGTT-1_17_39848018_C_T_+ AAGAACACACTAGGTT-1 17 39848018 C T + 1 1 C>T C>T +AACAACCCAAAGCTCT-1_2_26913004_C_T_+ AACAACCCAAAGCTCT-1 2 26913004 C T + 1 1 C>T C>T +AAAGGATCATTCAGGT-1_6_49258835_T_G_- AAAGGATCATTCAGGT-1 6 49258835 T G - 1 1 T>G A>C +AAAGGTATCGATTGAC-1_9_3018000_C_T_- AAAGGTATCGATTGAC-1 9 3018000 C T - 1 1 C>T G>A +AAGACAAAGAGTTCGG-1_8_85718753_G_A_- AAGACAAAGAGTTCGG-1 8 85718753 G A - 1 1 G>A C>T +AAGATAGCAATAACGA-1_17_39847458_A_G_+ AAGATAGCAATAACGA-1 17 39847458 A G + 1 1 A>G A>G +AAGACAAAGATGCTAA-1_16_92079001_G_A_+ AAGACAAAGATGCTAA-1 16 92079001 G A + 1 1 G>A G>A +AAGAACATCTCCGAAA-1_5_3640256_A_G_- AAGAACATCTCCGAAA-1 5 3640256 A G - 1 1 A>G T>C +AACAAAGCACGGCACT-1_2_71211968_C_T_+ AACAAAGCACGGCACT-1 2 71211968 C T + 1 1 C>T C>T +AACGTCAGTCCCTGAG-1_12_72100643_C_T_+ AACGTCAGTCCCTGAG-1 12 72100643 C T + 1 1 C>T C>T +AAAGGTACAATTGCGT-1_8_121789820_C_T_+ AAAGGTACAATTGCGT-1 8 121789820 C T + 1 1 C>T C>T +AAAGTCCTCTCCGAGG-1_MT_6547_A_G_+ AAAGTCCTCTCCGAGG-1 MT 6547 A G + 1 1 A>G A>G +AAGATAGCACGCGTGT-1_9_28054534_A_G_+ AAGATAGCACGCGTGT-1 9 28054534 A G + 1 1 A>G A>G +AACGTCAAGCGAGGAG-1_7_28178976_A_G_+ AACGTCAAGCGAGGAG-1 7 28178976 A G + 1 1 A>G A>G +AACAAAGCACGGCACT-1_11_67688750_C_T_+ AACAAAGCACGGCACT-1 11 67688750 C T + 1 1 C>T C>T +AAAGTCCCATGTGGCC-1_1_42610515_T_A_- AAAGTCCCATGTGGCC-1 1 42610515 T A - 1 1 T>A A>T +AACACACAGGATCACG-1_2_5379332_A_T_- AACACACAGGATCACG-1 2 5379332 A T - 1 1 A>T T>A +AAGATAGGTCATCAGT-1_16_94663826_G_A_+ AAGATAGGTCATCAGT-1 16 94663826 G A + 1 1 G>A G>A +AAACGCTCAGTAGGAC-1_16_23113828_C_T_+ AAACGCTCAGTAGGAC-1 16 23113828 C T + 1 1 C>T C>T +AACCACAAGCTTTGTG-1_4_57717312_T_G_+ AACCACAAGCTTTGTG-1 4 57717312 T G + 1 1 T>G T>G +AAGAACAAGAAGGGAT-1_11_74641317_C_T_+ AAGAACAAGAAGGGAT-1 11 74641317 C T + 1 1 C>T C>T +AAAGGTAGTATGTGTC-1_3_125865509_C_T_- AAAGGTAGTATGTGTC-1 3 125865509 C T - 1 2 C>T G>A +AACCTGACACACAGAG-1_5_65388625_A_C_- AACCTGACACACAGAG-1 5 65388625 A C - 1 1 A>C T>G +AAGAACAAGCTCGACC-1_2_144541782_G_A_+ AAGAACAAGCTCGACC-1 2 144541782 G A + 1 1 G>A G>A +AACCATGTCACGAGGA-1_16_57391454_T_C_- AACCATGTCACGAGGA-1 16 57391454 T C - 1 1 T>C A>G +AAACGAAGTTCATCTT-1_9_3035194_A_G_- AAACGAAGTTCATCTT-1 9 3035194 A G - 1 1 A>G T>C +AAACCCAGTGCTCGTG-1_17_39847291_G_T_+ AAACCCAGTGCTCGTG-1 17 39847291 G T + 1 1 G>T G>T +AAACCCAAGGTTTGAA-1_5_135073093_C_A_- AAACCCAAGGTTTGAA-1 5 135073093 C A - 1 1 C>A G>T +AACCCAAGTGTCATCA-1_8_46207397_G_A_- AACCCAAGTGTCATCA-1 8 46207397 G A - 1 1 G>A C>T +AAGAACACAAAGGTTA-1_14_54907091_T_C_- AAGAACACAAAGGTTA-1 14 54907091 T C - 1 1 T>C A>G +AAGACTCTCATTGGTG-1_9_3035786_T_G_- AAGACTCTCATTGGTG-1 9 3035786 T G - 1 1 T>G A>C +AAGACTCGTGGTACAG-1_13_29026535_A_G_+ AAGACTCGTGGTACAG-1 13 29026535 A G + 1 1 A>G A>G +AACAACCCAAGACGGT-1_15_96196282_A_T_- AACAACCCAAGACGGT-1 15 96196282 A T - 1 1 A>T T>A +AAGACTCGTGGTACAG-1_11_46261596_G_A_- AAGACTCGTGGTACAG-1 11 46261596 G A - 1 1 G>A C>T AACCAACAGCTACTGT-1_19_47083463_C_T_+ AACCAACAGCTACTGT-1 19 47083463 C T + 1 1 C>T C>T -AAGACTCCAACACAGG-1_19_29715491_A_T_- AAGACTCCAACACAGG-1 19 29715491 A T - 1 1 A>T T>A -AAGAACATCTCCGAAA-1_19_5801369_A_C_- AAGAACATCTCCGAAA-1 19 5801369 A C - 1 1 A>C T>G +AACCTTTCATTGAAAG-1_16_38449821_A_T_- AACCTTTCATTGAAAG-1 16 38449821 A T - 1 1 A>T T>A +AAGACTCTCTGGGCAC-1_7_19696428_A_G_- AAGACTCTCTGGGCAC-1 7 19696428 A G - 1 1 A>G T>C +AACTTCTCACTAACGT-1_7_24888315_G_C_+ AACTTCTCACTAACGT-1 7 24888315 G C + 1 1 G>C G>C +AAACGAAAGTGGACTG-1_19_7578998_A_G_+ AAACGAAAGTGGACTG-1 19 7578998 A G + 1 1 A>G A>G +AACCAACAGGTCACTT-1_5_36795840_T_A_- AACCAACAGGTCACTT-1 5 36795840 T A - 1 1 T>A A>T +AAGACTCTCGAGTACT-1_10_127092985_G_T_+ AAGACTCTCGAGTACT-1 10 127092985 G T + 1 1 G>T G>T +AAACCCAGTTCTGACA-1_2_5379332_A_T_- AAACCCAGTTCTGACA-1 2 5379332 A T - 1 1 A>T T>A +AACCTGAAGTCCCAGC-1_2_144142590_G_T_- AACCTGAAGTCCCAGC-1 2 144142590 G T - 1 1 G>T C>A +AAACGCTCAGTAGGAC-1_2_126709189_G_T_- AAACGCTCAGTAGGAC-1 2 126709189 G T - 1 1 G>T C>A +AAACGCTCATCAACCA-1_10_79711801_T_A_+ AAACGCTCATCAACCA-1 10 79711801 T A + 1 1 T>A T>A +AAACGCTCAGTAGGAC-1_15_98950006_G_A_- AAACGCTCAGTAGGAC-1 15 98950006 G A - 1 1 G>A C>T +AACCAACCAGTCTTCC-1_16_11220494_A_T_- AACCAACCAGTCTTCC-1 16 11220494 A T - 1 1 A>T T>A +AAAGGGCTCTGCTAGA-1_1_14753398_C_T_- AAAGGGCTCTGCTAGA-1 1 14753398 C T - 1 1 C>T G>A +AAGACTCTCGAGTACT-1_8_123103347_A_G_+ AAGACTCTCGAGTACT-1 8 123103347 A G + 1 1 A>G A>G +AACCTTTAGTAGGAAG-1_12_113074200_A_C_+ AACCTTTAGTAGGAAG-1 12 113074200 A C + 1 1 A>C A>C +AAAGGGCCAGCGCTTG-1_4_155573058_A_T_+ AAAGGGCCAGCGCTTG-1 4 155573058 A T + 1 1 A>T A>T +AACCATGGTCATACCA-1_17_39848018_C_T_+ AACCATGGTCATACCA-1 17 39848018 C T + 1 1 C>T C>T +AAACGAAGTGCTCTCT-1_18_69684328_A_G_+ AAACGAAGTGCTCTCT-1 18 69684328 A G + 1 1 A>G A>G +AAATGGATCGCTAATG-1_4_115878902_C_T_+ AAATGGATCGCTAATG-1 4 115878902 C T + 1 1 C>T C>T +AACGGGAGTGAGCTCC-1_14_63142955_G_A_+ AACGGGAGTGAGCTCC-1 14 63142955 G A + 1 1 G>A G>A +AAGACTCGTGGTACAG-1_3_40790311_C_T_+ AAGACTCGTGGTACAG-1 3 40790311 C T + 1 1 C>T C>T +AAGAACACAACCGCTG-1_13_55498460_A_G_- AAGAACACAACCGCTG-1 13 55498460 A G - 1 1 A>G T>C +AACGTCAGTAGAGCTG-1_MT_6531_G_T_+ AACGTCAGTAGAGCTG-1 MT 6531 G T + 1 1 G>T G>T +AAACGAATCGCAGAGA-1_2_156388160_G_A_- AAACGAATCGCAGAGA-1 2 156388160 G A - 1 1 G>A C>T +AACACACCATCGTCCT-1_8_85815136_C_A_- AACACACCATCGTCCT-1 8 85815136 C A - 1 1 C>A G>T +AACAACCCAAAGCTCT-1_1_79794690_G_A_- AACAACCCAAAGCTCT-1 1 79794690 G A - 1 1 G>A C>T +AAACGAACACGACTAT-1_9_3024483_T_A_- AAACGAACACGACTAT-1 9 3024483 T A - 1 1 T>A A>T +AACAACCAGTAATACG-1_19_23165193_T_G_+ AACAACCAGTAATACG-1 19 23165193 T G + 1 1 T>G T>G +AAGACTCAGAGGGTCT-1_17_39847607_T_C_+ AAGACTCAGAGGGTCT-1 17 39847607 T C + 1 1 T>C T>C +AAAGTCCGTGACTGTT-1_12_109564314_A_G_+ AAAGTCCGTGACTGTT-1 12 109564314 A G + 1 1 A>G A>G +AACCACAAGTTAGTGA-1_13_54383843_C_T_+ AACCACAAGTTAGTGA-1 13 54383843 C T + 1 1 C>T C>T +AACCCAAAGCGATCGA-1_10_117865303_A_G_- AACCCAAAGCGATCGA-1 10 117865303 A G - 1 1 A>G T>C +AAGATAGAGACCAGCA-1_9_3035184_T_C_- AAGATAGAGACCAGCA-1 9 3035184 T C - 1 1 T>C A>G AACGGGAGTCAGGCAA-1_19_8952056_A_G_+ AACGGGAGTCAGGCAA-1 19 8952056 A G + 1 1 A>G A>G -AACCCAATCCTCTAGC-1_19_5802657_G_A_- AACCCAATCCTCTAGC-1 19 5802657 G A - 1 2 G>A C>T -AAACGAAAGGTAGTCG-1_19_41213984_T_C_- AAACGAAAGGTAGTCG-1 19 41213984 T C - 1 1 T>C A>G -AACTTCTCAGGACTTT-1_19_9123940_T_C_- AACTTCTCAGGACTTT-1 19 9123940 T C - 1 1 T>C A>G -AAATGGAGTACTCGAT-1_19_6906904_T_A_- AAATGGAGTACTCGAT-1 19 6906904 T A - 1 1 T>A A>T -AACGGGAGTTGTGCCG-1_19_43664152_G_A_- AACGGGAGTTGTGCCG-1 19 43664152 G A - 1 1 G>A C>T -AACCACAGTGTTCCTC-1_19_21392339_G_A_- AACCACAGTGTTCCTC-1 19 21392339 G A - 1 1 G>A C>T -AAGACAAAGAAGGGAT-1_19_45792458_G_A_- AAGACAAAGAAGGGAT-1 19 45792458 G A - 1 1 G>A C>T -AAGAACATCCTGGTCT-1_19_47025263_C_T_+ AAGAACATCCTGGTCT-1 19 47025263 C T + 1 1 C>T C>T -AACGGGAAGTTGCCCG-1_19_45750349_G_A_- AACGGGAAGTTGCCCG-1 19 45750349 G A - 1 1 G>A C>T -AACCAACGTGCATGTT-1_19_9984993_G_A_+ AACCAACGTGCATGTT-1 19 9984993 G A + 1 1 G>A G>A -AAGATAGAGGTTGAGC-1_19_10451481_C_T_+ AAGATAGAGGTTGAGC-1 19 10451481 C T + 1 1 C>T C>T -AACGGGAAGTTGCCCG-1_19_5800795_G_A_- AACGGGAAGTTGCCCG-1 19 5800795 G A - 1 1 G>A C>T -AACGTCATCTGGCTGG-1_19_10206438_G_A_+ AACGTCATCTGGCTGG-1 19 10206438 G A + 1 1 G>A G>A -AAAGGATCACGACAGA-1_19_9984972_C_T_+ AAAGGATCACGACAGA-1 19 9984972 C T + 1 1 C>T C>T -AAACGCTCAGTAGGAC-1_19_7198530_G_A_- AAACGCTCAGTAGGAC-1 19 7198530 G A - 1 1 G>A C>T -AACCACAGTGTTCCTC-1_19_21392291_C_T_- AACCACAGTGTTCCTC-1 19 21392291 C T - 1 1 C>T G>A -AAGACTCAGAGTTGCG-1_19_9984860_T_C_+ AAGACTCAGAGTTGCG-1 19 9984860 T C + 1 1 T>C T>C -AACCTTTGTGGTCAAG-1_19_5490583_C_T_+ AACCTTTGTGGTCAAG-1 19 5490583 C T + 1 1 C>T C>T -AAGACAAAGTAATACG-1_19_24294906_C_T_- AAGACAAAGTAATACG-1 19 24294906 C T - 1 1 C>T G>A -AAATGGACACCCGTAG-1_19_32515139_G_A_+ AAATGGACACCCGTAG-1 19 32515139 G A + 1 1 G>A G>A -AACAAGAAGCAATTAG-1_19_5802648_T_G_- AACAAGAAGCAATTAG-1 19 5802648 T G - 1 5 T>G A>C -AAAGGTACAATTGCAC-1_19_10245420_G_A_- AAAGGTACAATTGCAC-1 19 10245420 G A - 1 1 G>A C>T -AACCTTTAGACCAGAC-1_19_5801530_A_G_- AACCTTTAGACCAGAC-1 19 5801530 A G - 1 1 A>G T>C -AACCTTTCACACCTGG-1_19_5802653_T_A_- AACCTTTCACACCTGG-1 19 5802653 T A - 1 3 T>A A>T -AAACGCTGTCAATGGG-1_19_46330184_T_C_+ AAACGCTGTCAATGGG-1 19 46330184 T C + 1 1 T>C T>C -AACTTCTAGCAGATAT-1_19_5802633_G_T_- AACTTCTAGCAGATAT-1 19 5802633 G T - 1 6 G>T C>A -AACCAACAGCTACTGT-1_19_47083461_A_G_+ AACCAACAGCTACTGT-1 19 47083461 A G + 1 1 A>G A>G -AAGAACACACAAGCCC-1_19_5802168_T_C_- AAGAACACACAAGCCC-1 19 5802168 T C - 1 1 T>C A>G +AACAAGAGTTCTCAGA-1_17_39847137_T_C_+ AACAAGAGTTCTCAGA-1 17 39847137 T C + 1 1 T>C T>C +AAGAACAGTAAGATAC-1_X_101322628_T_G_+ AAGAACAGTAAGATAC-1 X 101322628 T G + 1 1 T>G T>G +AACCACAAGCTTTGTG-1_1_25067687_G_A_- AACCACAAGCTTTGTG-1 1 25067687 G A - 1 1 G>A C>T +AAAGGGCGTACCGTCG-1_17_39847309_C_T_+ AAAGGGCGTACCGTCG-1 17 39847309 C T + 1 1 C>T C>T +AACCTGACATCATCCC-1_17_39848018_C_T_+ AACCTGACATCATCCC-1 17 39848018 C T + 1 1 C>T C>T +AACTTCTTCTTCACGC-1_12_72212478_G_A_- AACTTCTTCTTCACGC-1 12 72212478 G A - 1 1 G>A C>T +AAGACTCTCATTGGTG-1_17_39847146_G_C_+ AAGACTCTCATTGGTG-1 17 39847146 G C + 1 1 G>C G>C +AACTTCTCAGGACTTT-1_19_9123948_T_A_- AACTTCTCAGGACTTT-1 19 9123948 T A - 1 1 T>A A>T +AACCTTTTCCGTGTGG-1_9_3000592_T_C_- AACCTTTTCCGTGTGG-1 9 3000592 T C - 1 1 T>C A>G +AACAACCTCGCAGATT-1_17_39848100_A_T_+ AACAACCTCGCAGATT-1 17 39848100 A T + 1 1 A>T A>T +AAGACTCGTCCACATA-1_1_177024082_T_C_- AAGACTCGTCCACATA-1 1 177024082 T C - 1 1 T>C A>G +AACACACGTGTTGCCG-1_1_84170890_A_C_- AACACACGTGTTGCCG-1 1 84170890 A C - 1 1 A>C T>G +AAACGAAGTTCATCTT-1_15_25687445_C_T_+ AAACGAAGTTCATCTT-1 15 25687445 C T + 1 1 C>T C>T +AACACACAGTGCACAG-1_15_18862540_A_C_+ AACACACAGTGCACAG-1 15 18862540 A C + 1 1 A>C A>C +AAGACAAGTACTGACT-1_4_48561784_A_G_+ AAGACAAGTACTGACT-1 4 48561784 A G + 1 1 A>G A>G +AAGAACACAGGTGACA-1_17_39847174_T_G_- AAGAACACAGGTGACA-1 17 39847174 T G - 1 1 T>G A>C +AACGGGAGTGTCCAAT-1_14_49012522_G_A_- AACGGGAGTGTCCAAT-1 14 49012522 G A - 1 1 G>A C>T +AACCAACAGCTACTGT-1_19_47083462_G_C_+ AACCAACAGCTACTGT-1 19 47083462 G C + 1 1 G>C G>C +AAAGAACAGCCTGAAG-1_3_136937510_A_G_+ AAAGAACAGCCTGAAG-1 3 136937510 A G + 1 1 A>G A>G +AACCACATCGTCAGAT-1_9_3000552_T_A_- AACCACATCGTCAGAT-1 9 3000552 T A - 1 1 T>A A>T +AAAGGGCGTTCCAAAC-1_14_75848304_G_A_+ AAAGGGCGTTCCAAAC-1 14 75848304 G A + 1 1 G>A G>A +AAAGTCCCACAAATGA-1_7_99479424_A_G_- AAAGTCCCACAAATGA-1 7 99479424 A G - 1 1 A>G T>C +AACAAAGCACGGCACT-1_4_43032494_T_G_- AACAAAGCACGGCACT-1 4 43032494 T G - 1 1 T>G A>C +AACCTGACATGAGATA-1_17_39848100_A_T_+ AACCTGACATGAGATA-1 17 39848100 A T + 1 1 A>T A>T +AACAAGAAGTAAACTG-1_19_5802630_T_A_- AACAAGAAGTAAACTG-1 19 5802630 T A - 1 2 T>A A>T +AAAGGATAGCGTTGTT-1_17_39847607_T_C_+ AAAGGATAGCGTTGTT-1 17 39847607 T C + 1 1 T>C T>C +AAACCCACACCGTGGT-1_7_16915469_T_A_- AAACCCACACCGTGGT-1 7 16915469 T A - 1 1 T>A A>T +AAGACTCGTCCACATA-1_12_111539469_C_T_+ AAGACTCGTCCACATA-1 12 111539469 C T + 1 1 C>T C>T +AACGAAAAGAATCGTA-1_9_3035191_C_A_- AACGAAAAGAATCGTA-1 9 3035191 C A - 1 1 C>A G>T +AACACACCAGAGGCTA-1_14_28356643_A_G_+ AACACACCAGAGGCTA-1 14 28356643 A G + 1 1 A>G A>G +AACAGGGTCGGTCGGT-1_16_57391683_T_A_- AACAGGGTCGGTCGGT-1 16 57391683 T A - 1 1 T>A A>T +AAAGTCCCAGAGGACT-1_17_87433547_G_A_- AAAGTCCCAGAGGACT-1 17 87433547 G A - 1 1 G>A C>T +AAAGGTAGTATGCTAC-1_5_123621900_C_T_- AAAGGTAGTATGCTAC-1 5 123621900 C T - 1 1 C>T G>A +AAAGGTAGTATGCTAC-1_2_25291331_G_A_- AAAGGTAGTATGCTAC-1 2 25291331 G A - 1 1 G>A C>T +AAGATAGAGGAATCGC-1_13_59000880_T_C_+ AAGATAGAGGAATCGC-1 13 59000880 T C + 1 1 T>C T>C +AACGGGAGTGTCCAAT-1_14_75760172_A_T_- AACGGGAGTGTCCAAT-1 14 75760172 A T - 1 1 A>T T>A +AAACCCACATATCTCT-1_2_5379332_A_T_- AAACCCACATATCTCT-1 2 5379332 A T - 1 1 A>T T>A +AACCACAAGCTTTGTG-1_9_120495233_C_T_+ AACCACAAGCTTTGTG-1 9 120495233 C T + 1 1 C>T C>T +AAGAACAGTTGCAAGG-1_17_39847607_T_C_- AAGAACAGTTGCAAGG-1 17 39847607 T C - 1 2 T>C A>G +AACCTTTCATTGAAAG-1_Y_90816411_G_A_+ AACCTTTCATTGAAAG-1 Y 90816411 G A + 1 1 G>A G>A +AACACACCATAACGGG-1_16_57391454_T_C_- AACACACCATAACGGG-1 16 57391454 T C - 1 1 T>C A>G +AAAGGATAGTTCCGGC-1_X_13285636_T_A_+ AAAGGATAGTTCCGGC-1 X 13285636 T A + 1 1 T>A T>A +AACTTCTTCTTCACGC-1_X_20615455_G_A_- AACTTCTTCTTCACGC-1 X 20615455 G A - 1 1 G>A C>T +AACAAGACACTCTAGA-1_17_39847403_T_G_+ AACAAGACACTCTAGA-1 17 39847403 T G + 1 1 T>G T>G +AACACACGTGTTGCCG-1_1_84170833_A_C_- AACACACGTGTTGCCG-1 1 84170833 A C - 1 1 A>C T>G +AAGACAAGTACTGACT-1_5_92348857_T_C_- AAGACAAGTACTGACT-1 5 92348857 T C - 1 1 T>C A>G +AACGTCAAGCGAGGAG-1_9_70554648_T_C_+ AACGTCAAGCGAGGAG-1 9 70554648 T C + 1 1 T>C T>C +AACGAAACAACTGAAA-1_14_77984503_G_A_+ AACGAAACAACTGAAA-1 14 77984503 G A + 1 1 G>A G>A +AACCAACTCTTAATCC-1_5_122550498_C_T_- AACCAACTCTTAATCC-1 5 122550498 C T - 1 1 C>T G>A +AACAAAGAGCCGATTT-1_6_46051087_T_G_+ AACAAAGAGCCGATTT-1 6 46051087 T G + 1 1 T>G T>G +AAAGAACCACTCCGAG-1_8_123840283_G_A_- AAAGAACCACTCCGAG-1 8 123840283 G A - 1 1 G>A C>T +AACCAACTCGATGGAG-1_4_132492114_C_G_- AACCAACTCGATGGAG-1 4 132492114 C G - 1 1 C>G G>C AAAGGTACAATTGCAC-1_19_10245419_G_A_- AAAGGTACAATTGCAC-1 19 10245419 G A - 1 1 G>A C>T -AACCACAGTGTTCCTC-1_19_21392331_G_A_- AACCACAGTGTTCCTC-1 19 21392331 G A - 1 1 G>A C>T -AAGACTCGTGGTACAG-1_19_36893403_C_T_+ AAGACTCGTGGTACAG-1 19 36893403 C T + 1 1 C>T C>T -AAACGAAAGTCGCGAA-1_19_5802230_A_T_- AAACGAAAGTCGCGAA-1 19 5802230 A T - 1 2 A>T T>A -AACCACAAGTTGCCTA-1_19_5802084_A_G_- AACCACAAGTTGCCTA-1 19 5802084 A G - 1 3 A>G T>C -AACAACCCACACACGC-1_19_5802109_G_A_- AACAACCCACACACGC-1 19 5802109 G A - 1 1 G>A C>T +AAAGTGAAGGCATCGA-1_11_5967756_G_A_+ AAAGTGAAGGCATCGA-1 11 5967756 G A + 1 1 G>A G>A +AAACGCTGTCTGTTAG-1_8_94675444_C_G_- AAACGCTGTCTGTTAG-1 8 94675444 C G - 1 1 C>G G>C +AAACGCTCAGTAGGAC-1_7_28352404_C_T_+ AAACGCTCAGTAGGAC-1 7 28352404 C T + 1 1 C>T C>T AACCCAAAGCAAATGT-1_19_5802650_T_C_- AACCCAAAGCAAATGT-1 19 5802650 T C - 1 11 T>C A>G -AACAACCTCGCAGATT-1_19_60525722_G_A_- AACAACCTCGCAGATT-1 19 60525722 G A - 1 1 G>A C>T -AACAACCAGACGACTG-1_19_6530842_C_A_- AACAACCAGACGACTG-1 19 6530842 C A - 1 1 C>A G>T -AAAGTCCAGTCGGCCT-1_19_5603272_G_A_- AAAGTCCAGTCGGCCT-1 19 5603272 G A - 1 1 G>A C>T -AACAACCAGTAATACG-1_19_5493813_C_T_+ AACAACCAGTAATACG-1 19 5493813 C T + 1 1 C>T C>T -AACTTCTCAGGACTTT-1_19_5802172_C_A_- AACTTCTCAGGACTTT-1 19 5802172 C A - 1 2 C>A G>T -AAACGCTCAGTAGGAC-1_19_9985010_C_T_+ AAACGCTCAGTAGGAC-1 19 9985010 C T + 1 1 C>T C>T -AAAGAACCACTCCGAG-1_19_5802612_C_A_- AAAGAACCACTCCGAG-1 19 5802612 C A - 1 2 C>A G>T -AACCAACGTTTGACAC-1_19_9984968_T_A_+ AACCAACGTTTGACAC-1 19 9984968 T A + 1 1 T>A T>A -AACCATGTCCAATCTT-1_19_5802668_G_A_- AACCATGTCCAATCTT-1 19 5802668 G A - 1 3 G>A C>T -AACGTCACACTCCTTG-1_19_5802603_C_T_- AACGTCACACTCCTTG-1 19 5802603 C T - 1 4 C>T G>A -AACCAACAGCTACTGT-1_19_47083460_C_A_+ AACCAACAGCTACTGT-1 19 47083460 C A + 1 1 C>A C>A -AACCACAAGCTTTGTG-1_19_16387008_C_T_+ AACCACAAGCTTTGTG-1 19 16387008 C T + 1 1 C>T C>T -AAGACTCCAACACAGG-1_19_29715490_C_T_- AAGACTCCAACACAGG-1 19 29715490 C T - 1 1 C>T G>A -AAAGGATCATTCAGGT-1_19_5802099_C_A_- AAAGGATCATTCAGGT-1 19 5802099 C A - 1 2 C>A G>T -AAACCCATCGGATAAA-1_19_41211098_A_G_- AAACCCATCGGATAAA-1 19 41211098 A G - 1 1 A>G T>C -AACCACATCGGAGATG-1_19_12767323_A_C_- AACCACATCGGAGATG-1 19 12767323 A C - 1 1 A>C T>G -AACTTCTAGCAGATAT-1_19_5802632_T_C_- AACTTCTAGCAGATAT-1 19 5802632 T C - 1 6 T>C A>G -AACGTCATCTGGCTGG-1_19_42283292_T_C_- AACGTCATCTGGCTGG-1 19 42283292 T C - 1 1 T>C A>G -AACCACAAGCTTTGTG-1_19_16386991_C_T_+ AACCACAAGCTTTGTG-1 19 16386991 C T + 1 1 C>T C>T -AAGACAAAGAGTTCGG-1_19_44306704_G_A_+ AAGACAAAGAGTTCGG-1 19 44306704 G A + 1 1 G>A G>A -AACTTCTTCTTCACGC-1_19_53944869_G_A_+ AACTTCTTCTTCACGC-1 19 53944869 G A + 1 1 G>A G>A -AAATGGACACAAGGTG-1_19_41526756_C_A_+ AAATGGACACAAGGTG-1 19 41526756 C A + 1 1 C>A C>A -AACCTGATCGGATACT-1_19_5802417_T_G_- AACCTGATCGGATACT-1 19 5802417 T G - 1 1 T>G A>C -AAACCCACAATCTCTT-1_19_8927017_C_T_+ AAACCCACAATCTCTT-1 19 8927017 C T + 1 1 C>T C>T -AAATGGAAGCAGATAT-1_19_5802515_A_G_- AAATGGAAGCAGATAT-1 19 5802515 A G - 1 1 A>G T>C -AAAGGTAGTATGTGTC-1_19_5802177_C_T_- AAAGGTAGTATGTGTC-1 19 5802177 C T - 1 1 C>T G>A -AAGATAGGTACGCGTC-1_19_31081986_T_G_- AAGATAGGTACGCGTC-1 19 31081986 T G - 1 1 T>G A>C -AACGTCACACTCCTTG-1_19_44073569_A_C_- AACGTCACACTCCTTG-1 19 44073569 A C - 1 1 A>C T>G -AAACGCTCAGTAGGAC-1_19_7198565_G_A_- AAACGCTCAGTAGGAC-1 19 7198565 G A - 1 1 G>A C>T +AACGAAAAGACCTGGA-1_17_39848018_C_T_+ AACGAAAAGACCTGGA-1 17 39848018 C T + 1 1 C>T C>T +AACGAAAAGCACCCAC-1_2_104057170_C_T_+ AACGAAAAGCACCCAC-1 2 104057170 C T + 1 1 C>T C>T +AACCCAATCCCTCATG-1_9_108560049_G_A_+ AACCCAATCCCTCATG-1 9 108560049 G A + 1 1 G>A G>A +AACAAAGGTAGGGTAC-1_12_8938550_T_G_+ AACAAAGGTAGGGTAC-1 12 8938550 T G + 1 1 T>G T>G +AACAGGGCAGATTTCG-1_4_44891321_G_A_+ AACAGGGCAGATTTCG-1 4 44891321 G A + 1 1 G>A G>A +AAGAACAGTTGCAAGG-1_11_5042557_T_A_+ AAGAACAGTTGCAAGG-1 11 5042557 T A + 1 1 T>A T>A +AACAACCCATTAAAGG-1_2_167515851_C_A_+ AACAACCCATTAAAGG-1 2 167515851 C A + 1 1 C>A C>A +AAACGCTCAGTAGGAC-1_16_38445541_G_A_- AAACGCTCAGTAGGAC-1 16 38445541 G A - 1 1 G>A C>T +AAGATAGGTACGCGTC-1_18_60987951_G_A_+ AAGATAGGTACGCGTC-1 18 60987951 G A + 1 1 G>A G>A +AACCAACTCACCCATC-1_16_57391454_T_C_- AACCAACTCACCCATC-1 16 57391454 T C - 1 1 T>C A>G +AAGACAATCGCGTAGC-1_17_39847261_G_C_- AAGACAATCGCGTAGC-1 17 39847261 G C - 1 1 G>C C>G +AAAGGGCTCTCACTCG-1_10_100070536_A_T_+ AAAGGGCTCTCACTCG-1 10 100070536 A T + 1 1 A>T A>T +AACCATGCAGAGTTCT-1_16_57391680_C_T_- AACCATGCAGAGTTCT-1 16 57391680 C T - 1 1 C>T G>A +AACAAAGAGTGGAATT-1_5_146261113_T_C_+ AACAAAGAGTGGAATT-1 5 146261113 T C + 1 1 T>C T>C +AACCACAAGCTTTGTG-1_11_32059060_C_T_+ AACCACAAGCTTTGTG-1 11 32059060 C T + 1 1 C>T C>T +AAACGCTAGGTTACAA-1_11_5990420_A_C_- AAACGCTAGGTTACAA-1 11 5990420 A C - 1 1 A>C T>G +AAACCCACATATCTGG-1_4_108276371_G_A_- AAACCCACATATCTGG-1 4 108276371 G A - 1 1 G>A C>T +AACGTCAGTCAAGCCC-1_17_39847157_G_A_+ AACGTCAGTCAAGCCC-1 17 39847157 G A + 1 1 G>A G>A +AAGACAACATGACAAA-1_18_59076932_T_C_+ AAGACAACATGACAAA-1 18 59076932 T C + 1 1 T>C T>C +AACGTCACAAGAATGT-1_18_60987786_C_T_+ AACGTCACAAGAATGT-1 18 60987786 C T + 1 1 C>T C>T +AAAGTCCGTGTTCAGT-1_9_75181943_C_T_+ AAAGTCCGTGTTCAGT-1 9 75181943 C T + 1 1 C>T C>T +AAAGTGAGTCATCACA-1_17_56606174_A_T_+ AAAGTGAGTCATCACA-1 17 56606174 A T + 1 1 A>T A>T +AACCTTTCACACCTGG-1_4_138457027_T_A_+ AACCTTTCACACCTGG-1 4 138457027 T A + 1 1 T>A T>A +AACCCAAGTATCGATC-1_JH584304.1_53551_T_G_- AACCCAAGTATCGATC-1 JH584304.1 53551 T G - 1 1 T>G A>C +AAGACTCAGAGGGTCT-1_4_155649888_A_T_+ AAGACTCAGAGGGTCT-1 4 155649888 A T + 1 1 A>T A>T +AACCACAGTTTGATCG-1_11_98030317_C_T_+ AACCACAGTTTGATCG-1 11 98030317 C T + 1 1 C>T C>T +AAACCCACATGGGATG-1_3_107438506_G_A_- AAACCCACATGGGATG-1 3 107438506 G A - 1 1 G>A C>T +AACTTCTGTGCATGTT-1_9_3037747_T_C_- AACTTCTGTGCATGTT-1 9 3037747 T C - 1 1 T>C A>G +AACCTTTAGGGTATAT-1_5_49307904_A_G_- AACCTTTAGGGTATAT-1 5 49307904 A G - 1 1 A>G T>C +AACCACAAGGACAGCT-1_4_141858528_G_C_- AACCACAAGGACAGCT-1 4 141858528 G C - 1 1 G>C C>G +AAACCCAGTATGTCCA-1_16_57391679_G_T_- AAACCCAGTATGTCCA-1 16 57391679 G T - 1 1 G>T C>A +AACAAAGCACGGCACT-1_8_94179868_A_G_+ AACAAAGCACGGCACT-1 8 94179868 A G + 1 1 A>G A>G +AAATGGAAGCCGGATA-1_15_50658429_C_T_- AAATGGAAGCCGGATA-1 15 50658429 C T - 1 1 C>T G>A +AACGTCAAGAACTCCT-1_9_3037748_A_T_- AACGTCAAGAACTCCT-1 9 3037748 A T - 1 1 A>T T>A +AACCTTTCAGACCTGC-1_8_123663738_G_A_+ AACCTTTCAGACCTGC-1 8 123663738 G A + 1 1 G>A G>A +AACAACCAGACGACTG-1_17_39847190_G_C_+ AACAACCAGACGACTG-1 17 39847190 G C + 1 1 G>C G>C +AAACCCAAGATTGCGG-1_3_115710631_G_A_- AAACCCAAGATTGCGG-1 3 115710631 G A - 1 1 G>A C>T +AAATGGAAGCAGATAT-1_4_117948545_T_C_- AAATGGAAGCAGATAT-1 4 117948545 T C - 1 1 T>C A>G +AAACGAAAGCGAACTG-1_8_94674305_C_T_+ AAACGAAAGCGAACTG-1 8 94674305 C T + 1 1 C>T C>T +AAACGCTAGGTTACAA-1_10_80287756_C_T_+ AAACGCTAGGTTACAA-1 10 80287756 C T + 1 1 C>T C>T +AACGGGAAGACAGCGT-1_2_156928163_T_G_- AACGGGAAGACAGCGT-1 2 156928163 T G - 1 1 T>G A>C +AAACCCACAATTGCGT-1_16_57391637_G_A_- AAACCCACAATTGCGT-1 16 57391637 G A - 1 1 G>A C>T +AAAGGATTCTAGGCAT-1_6_80148485_A_G_+ AAAGGATTCTAGGCAT-1 6 80148485 A G + 1 1 A>G A>G +AACCAACTCGGAAGGT-1_3_14900714_C_T_+ AACCAACTCGGAAGGT-1 3 14900714 C T + 1 1 C>T C>T +AAGACTCGTCCACATA-1_5_146261080_C_A_+ AAGACTCGTCCACATA-1 5 146261080 C A + 1 1 C>A C>A +AACAACCCATGTAACC-1_12_108684608_A_T_+ AACAACCCATGTAACC-1 12 108684608 A T + 1 1 A>T A>T +AACGAAATCCTGTAAG-1_4_25700569_G_A_- AACGAAATCCTGTAAG-1 4 25700569 G A - 1 1 G>A C>T +AAAGGATAGTTCCGGC-1_X_13285637_A_T_+ AAAGGATAGTTCCGGC-1 X 13285637 A T + 1 1 A>T A>T +AAGACAAAGGGCAGGA-1_17_34613267_G_C_+ AAGACAAAGGGCAGGA-1 17 34613267 G C + 1 1 G>C G>C +AACCAACAGGTCACTT-1_5_36795836_G_A_- AACCAACAGGTCACTT-1 5 36795836 G A - 1 1 G>A C>T +AAACGAACATAGCACT-1_9_58652711_T_A_+ AAACGAACATAGCACT-1 9 58652711 T A + 1 1 T>A T>A +AACAACCGTATGTCTG-1_18_12992716_A_G_+ AACAACCGTATGTCTG-1 18 12992716 A G + 1 1 A>G A>G +AAACCCACAGCTAACT-1_19_9984967_C_T_+ AAACCCACAGCTAACT-1 19 9984967 C T + 1 1 C>T C>T +AAACGAAGTTCATCTT-1_3_146499985_C_T_+ AAACGAAGTTCATCTT-1 3 146499985 C T + 1 1 C>T C>T +AAAGAACCACTCCGAG-1_6_23395310_C_A_- AAAGAACCACTCCGAG-1 6 23395310 C A - 1 1 C>A G>T +AACAACCGTATGTCTG-1_2_65710156_T_A_+ AACAACCGTATGTCTG-1 2 65710156 T A + 1 1 T>A T>A +AAATGGAAGCAGATAT-1_7_127774934_A_G_+ AAATGGAAGCAGATAT-1 7 127774934 A G + 1 1 A>G A>G +AAACGAAGTGTTTACG-1_16_57391685_G_A_- AAACGAAGTGTTTACG-1 16 57391685 G A - 1 1 G>A C>T +AAAGGGCTCTCACTCG-1_13_48892636_T_C_- AAAGGGCTCTCACTCG-1 13 48892636 T C - 1 1 T>C A>G +AAACGAATCACTTCTA-1_19_7215265_G_A_- AAACGAATCACTTCTA-1 19 7215265 G A - 1 1 G>A C>T +AAGAACAGTTGGAGGT-1_19_5664748_C_G_- AAGAACAGTTGGAGGT-1 19 5664748 C G - 1 1 C>G G>C +AACAAAGTCTACTCAT-1_9_3000314_A_T_- AACAAAGTCTACTCAT-1 9 3000314 A T - 1 1 A>T T>A +AACCACAAGCCTTTCC-1_4_86854693_C_T_- AACCACAAGCCTTTCC-1 4 86854693 C T - 1 1 C>T G>A +AAACGCTCAGTAGGAC-1_11_57084141_T_G_+ AAACGCTCAGTAGGAC-1 11 57084141 T G + 1 1 T>G T>G +AAGAACAAGTCTCTGA-1_5_146261004_G_C_+ AAGAACAAGTCTCTGA-1 5 146261004 G C + 1 1 G>C G>C +AACGGGATCTACCTTA-1_9_110384859_G_A_+ AACGGGATCTACCTTA-1 9 110384859 G A + 1 1 G>A G>A +AAAGTCCCATGTGGCC-1_6_141843447_C_T_- AAAGTCCCATGTGGCC-1 6 141843447 C T - 1 1 C>T G>A +AAATGGACAAGCGCAA-1_16_20702177_G_C_+ AAATGGACAAGCGCAA-1 16 20702177 G C + 1 1 G>C G>C +AACCACATCGGAGATG-1_10_69870695_C_A_+ AACCACATCGGAGATG-1 10 69870695 C A + 1 1 C>A C>A +AAATGGAGTACCGGAA-1_3_97772262_T_A_- AAATGGAGTACCGGAA-1 3 97772262 T A - 1 1 T>A A>T +AAACCCACAATCTCTT-1_7_142376071_G_A_- AAACCCACAATCTCTT-1 7 142376071 G A - 1 1 G>A C>T +AACGAAAAGCCGAACA-1_5_137295840_G_A_- AACGAAAAGCCGAACA-1 5 137295840 G A - 1 1 G>A C>T +AACCAACAGTACAACA-1_2_148871885_C_T_- AACCAACAGTACAACA-1 2 148871885 C T - 1 1 C>T G>A +AACCTGACATGAGATA-1_15_34441308_G_A_- AACCTGACATGAGATA-1 15 34441308 G A - 1 1 G>A C>T +AACAGGGCAAACTCGT-1_19_45005273_T_C_- AACAGGGCAAACTCGT-1 19 45005273 T C - 1 1 T>C A>G +AACACACCAGACCAGA-1_X_136838217_T_G_+ AACACACCAGACCAGA-1 X 136838217 T G + 1 3 T>G T>G +AACCAACCAGATCCAT-1_4_76927975_T_A_- AACCAACCAGATCCAT-1 4 76927975 T A - 1 1 T>A A>T +AAACGAAAGCGAACTG-1_2_5379332_A_T_- AAACGAAAGCGAACTG-1 2 5379332 A T - 1 1 A>T T>A +AACCACAAGCTTTGTG-1_19_7215295_G_A_- AACCACAAGCTTTGTG-1 19 7215295 G A - 1 1 G>A C>T +AACTTCTAGAGAACCC-1_9_3024524_C_T_- AACTTCTAGAGAACCC-1 9 3024524 C T - 1 1 C>T G>A +AAATGGAGTAGTGTGG-1_2_5379332_A_T_- AAATGGAGTAGTGTGG-1 2 5379332 A T - 1 1 A>T T>A +AAGAACAGTCGTTGCG-1_17_70819845_T_A_+ AAGAACAGTCGTTGCG-1 17 70819845 T A + 1 1 T>A T>A +AACTTCTAGACGCAGT-1_14_75762197_T_G_- AACTTCTAGACGCAGT-1 14 75762197 T G - 1 1 T>G A>C +AAGATAGAGCTTGTGT-1_7_83933112_G_A_- AAGATAGAGCTTGTGT-1 7 83933112 G A - 1 1 G>A C>T +AAGACTCGTTGCTCGG-1_9_70554621_A_C_+ AAGACTCGTTGCTCGG-1 9 70554621 A C + 1 1 A>C A>C +AAACGAAGTGTTTACG-1_4_126707569_G_A_+ AAACGAAGTGTTTACG-1 4 126707569 G A + 1 1 G>A G>A +AAGACAACATGGTGGA-1_9_119392840_G_T_+ AAGACAACATGGTGGA-1 9 119392840 G T + 1 1 G>T G>T +AAACGCTTCTCCTGCA-1_3_151730978_A_G_- AAACGCTTCTCCTGCA-1 3 151730978 A G - 1 1 A>G T>C +AACTTCTAGAGGTCGT-1_19_9984821_T_C_+ AACTTCTAGAGGTCGT-1 19 9984821 T C + 1 1 T>C T>C +AAGACTCGTACAGTAA-1_5_146261004_G_C_+ AAGACTCGTACAGTAA-1 5 146261004 G C + 1 1 G>C G>C +AAGACAAGTACTGACT-1_14_23400716_C_A_- AAGACAAGTACTGACT-1 14 23400716 C A - 1 1 C>A G>T +AAGAACAAGGTCGAGT-1_16_57391680_C_T_- AAGAACAAGGTCGAGT-1 16 57391680 C T - 1 1 C>T G>A +AAGACAAGTCGTGATT-1_2_71211973_T_G_+ AAGACAAGTCGTGATT-1 2 71211973 T G + 1 1 T>G T>G +AAGACAAAGATGCTAA-1_11_102477386_G_A_- AAGACAAAGATGCTAA-1 11 102477386 G A - 1 1 G>A C>T +AACAAAGAGGAGAATG-1_3_114081817_A_C_+ AACAAAGAGGAGAATG-1 3 114081817 A C + 1 1 A>C A>C +AACAAAGCATGAGGGT-1_5_122324140_T_C_+ AACAAAGCATGAGGGT-1 5 122324140 T C + 1 1 T>C T>C +AACCAACTCGATGGAG-1_19_44306705_C_T_+ AACCAACTCGATGGAG-1 19 44306705 C T + 1 1 C>T C>T +AAGACTCGTTGCTCGG-1_11_69554391_T_C_- AAGACTCGTTGCTCGG-1 11 69554391 T C - 1 1 T>C A>G +AACAACCGTACTCAAC-1_16_57391616_G_A_- AACAACCGTACTCAAC-1 16 57391616 G A - 1 1 G>A C>T +AACAGGGGTGCACATT-1_6_97211264_G_A_+ AACAGGGGTGCACATT-1 6 97211264 G A + 1 1 G>A G>A +AAAGAACTCGTGGGAA-1_X_20682450_G_A_+ AAAGAACTCGTGGGAA-1 X 20682450 G A + 1 1 G>A G>A +AACCATGCAGGTCAAG-1_16_33057504_C_T_+ AACCATGCAGGTCAAG-1 16 33057504 C T + 1 1 C>T C>T +AACACACTCTGCGGAC-1_13_119708024_T_G_+ AACACACTCTGCGGAC-1 13 119708024 T G + 1 1 T>G T>G +AACGTCATCTGGCTGG-1_7_126795446_A_G_- AACGTCATCTGGCTGG-1 7 126795446 A G - 1 1 A>G T>C +AAAGGGCGTTCCAAAC-1_16_41319656_G_T_+ AAAGGGCGTTCCAAAC-1 16 41319656 G T + 1 1 G>T G>T +AAGACTCAGAAATTCG-1_16_57391685_G_A_- AAGACTCAGAAATTCG-1 16 57391685 G A - 1 1 G>A C>T +AAGACAAAGCGCCTTG-1_5_65388675_G_A_- AAGACAAAGCGCCTTG-1 5 65388675 G A - 1 1 G>A C>T +AAAGTCCGTACAAGTA-1_12_99645645_A_G_+ AAAGTCCGTACAAGTA-1 12 99645645 A G + 1 1 A>G A>G +AACAAGAGTTACCTGA-1_9_3014337_T_C_- AACAAGAGTTACCTGA-1 9 3014337 T C - 1 1 T>C A>G +AAACGCTGTGGACAGT-1_9_115242668_C_T_- AAACGCTGTGGACAGT-1 9 115242668 C T - 1 1 C>T G>A +AAGACTCAGAAGCTCG-1_12_21399892_T_C_- AAGACTCAGAAGCTCG-1 12 21399892 T C - 1 1 T>C A>G +AACAGGGTCTTCCACG-1_13_28951570_C_T_- AACAGGGTCTTCCACG-1 13 28951570 C T - 1 1 C>T G>A +AAGACAACACCGCTGA-1_18_76305099_C_T_+ AAGACAACACCGCTGA-1 18 76305099 C T + 1 1 C>T C>T +AACAGGGCAAACTCGT-1_8_22429476_C_A_+ AACAGGGCAAACTCGT-1 8 22429476 C A + 1 1 C>A C>A +AACACACTCGCTCTAC-1_7_99345474_A_C_- AACACACTCGCTCTAC-1 7 99345474 A C - 1 1 A>C T>G +AAATGGATCCCTTGTG-1_17_39847403_T_G_+ AAATGGATCCCTTGTG-1 17 39847403 T G + 1 1 T>G T>G +AAGACTCCAACACAGG-1_7_127583206_G_C_+ AAGACTCCAACACAGG-1 7 127583206 G C + 1 1 G>C G>C +AACCATGTCCAATCTT-1_9_107799651_A_G_- AACCATGTCCAATCTT-1 9 107799651 A G - 1 1 A>G T>C +AACTTCTCACTAACGT-1_2_67638197_T_A_+ AACTTCTCACTAACGT-1 2 67638197 T A + 1 1 T>A T>A +AAGAACAGTAAGATAC-1_12_99645645_A_G_+ AAGAACAGTAAGATAC-1 12 99645645 A G + 1 1 A>G A>G +AACAAAGCACAGTATC-1_4_124849508_A_T_- AACAAAGCACAGTATC-1 4 124849508 A T - 1 1 A>T T>A +AAACCCACAGAGGAAA-1_2_148871808_C_T_- AAACCCACAGAGGAAA-1 2 148871808 C T - 1 1 C>T G>A +AAAGAACGTCTGTGTA-1_1_79781322_C_T_+ AAAGAACGTCTGTGTA-1 1 79781322 C T + 1 1 C>T C>T +AAAGTCCTCTCCGAGG-1_17_39847098_C_T_+ AAAGTCCTCTCCGAGG-1 17 39847098 C T + 1 1 C>T C>T +AACCTTTTCCTAGCGG-1_16_57391677_C_G_- AACCTTTTCCTAGCGG-1 16 57391677 C G - 1 1 C>G G>C +AAAGTCCTCCGATGCG-1_4_107200872_T_C_+ AAAGTCCTCCGATGCG-1 4 107200872 T C + 1 1 T>C T>C +AAGACAAAGGATACAT-1_17_39847403_T_G_- AAGACAAAGGATACAT-1 17 39847403 T G - 1 1 T>G A>C +AACTTCTAGCAGATAT-1_2_7086839_A_G_- AACTTCTAGCAGATAT-1 2 7086839 A G - 1 1 A>G T>C +AACAACCCATTCGGGC-1_2_98662876_T_C_+ AACAACCCATTCGGGC-1 2 98662876 T C + 1 1 T>C T>C +AACCACAGTGTTCCTC-1_9_67022613_G_A_- AACCACAGTGTTCCTC-1 9 67022613 G A - 1 1 G>A C>T +AACCAACAGTAGGATT-1_6_46908936_C_T_+ AACCAACAGTAGGATT-1 6 46908936 C T + 1 1 C>T C>T +AAAGGATAGTCCTGTA-1_3_93564583_G_C_+ AAAGGATAGTCCTGTA-1 3 93564583 G C + 1 1 G>C G>C +AACAAAGAGGAGAATG-1_14_36898224_T_C_- AACAAAGAGGAGAATG-1 14 36898224 T C - 1 1 T>C A>G +AAATGGAGTGAGTAGC-1_6_88842938_G_A_- AAATGGAGTGAGTAGC-1 6 88842938 G A - 1 1 G>A C>T +AAACGCTGTTTGACAC-1_1_161045079_C_T_- AAACGCTGTTTGACAC-1 1 161045079 C T - 1 1 C>T G>A +AAAGTCCGTAGGTTTC-1_4_130781374_T_A_+ AAAGTCCGTAGGTTTC-1 4 130781374 T A + 1 1 T>A T>A +AACTTCTCAGGACTTT-1_4_101625979_C_A_+ AACTTCTCAGGACTTT-1 4 101625979 C A + 1 1 C>A C>A +AACGGGAGTTGTGCCG-1_18_78817872_G_T_- AACGGGAGTTGTGCCG-1 18 78817872 G T - 1 1 G>T C>A +AAAGTCCAGTCGGCCT-1_17_39847518_G_T_+ AAAGTCCAGTCGGCCT-1 17 39847518 G T + 1 1 G>T G>T +AACAACCCATGTAACC-1_4_40757799_A_G_- AACAACCCATGTAACC-1 4 40757799 A G - 1 1 A>G T>C +AACCAACTCGATGGAG-1_14_44614131_C_T_- AACCAACTCGATGGAG-1 14 44614131 C T - 1 1 C>T G>A +AAAGTCCTCCAATCTT-1_17_8297383_C_T_+ AAAGTCCTCCAATCTT-1 17 8297383 C T + 1 1 C>T C>T +AACCACACAATCTGCA-1_9_3000548_A_T_- AACCACACAATCTGCA-1 9 3000548 A T - 1 1 A>T T>A +AACTTCTAGAACAGGA-1_9_95404162_A_G_- AACTTCTAGAACAGGA-1 9 95404162 A G - 1 1 A>G T>C +AACAAAGCACGGCACT-1_MT_9232_T_G_+ AACAAAGCACGGCACT-1 MT 9232 T G + 1 2 T>G T>G +AAAGAACCACTCCGAG-1_6_23588024_T_A_- AAAGAACCACTCCGAG-1 6 23588024 T A - 1 1 T>A A>T +AACCTTTAGACCATAA-1_5_115345856_T_C_- AACCTTTAGACCATAA-1 5 115345856 T C - 1 1 T>C A>G +AAGAACACACCGTGCA-1_17_24721645_C_T_+ AAGAACACACCGTGCA-1 17 24721645 C T + 1 1 C>T C>T +AACAAGAAGTAAACTG-1_17_39847403_T_G_+ AACAAGAAGTAAACTG-1 17 39847403 T G + 1 1 T>G T>G +AACCTTTCATTGAAAG-1_16_38449818_C_T_- AACCTTTCATTGAAAG-1 16 38449818 C T - 1 1 C>T G>A +AAAGGATGTACCATAC-1_17_39848018_C_T_+ AAAGGATGTACCATAC-1 17 39848018 C T + 1 1 C>T C>T +AACGTCAGTAGTCTGT-1_17_70974281_G_A_- AACGTCAGTAGTCTGT-1 17 70974281 G A - 1 1 G>A C>T +AAACGCTGTCATGGCC-1_9_3037748_A_T_- AAACGCTGTCATGGCC-1 9 3037748 A T - 1 1 A>T T>A +AACGGGAGTTTGGAAA-1_16_33503763_C_T_+ AACGGGAGTTTGGAAA-1 16 33503763 C T + 1 1 C>T C>T +AAACCCAAGATTGCGG-1_14_54888013_C_T_+ AAACCCAAGATTGCGG-1 14 54888013 C T + 1 1 C>T C>T +AAGAACAGTTGCAAGG-1_17_78375800_C_T_+ AAGAACAGTTGCAAGG-1 17 78375800 C T + 1 1 C>T C>T +AACCAACTCATAGACC-1_9_3000527_T_C_- AACCAACTCATAGACC-1 9 3000527 T C - 1 1 T>C A>G +AACAACCAGGGCTGAT-1_17_39847183_C_G_+ AACAACCAGGGCTGAT-1 17 39847183 C G + 1 1 C>G C>G +AAAGTGACAAATGGCG-1_7_129606524_T_C_+ AAAGTGACAAATGGCG-1 7 129606524 T C + 1 1 T>C T>C +AACTTCTTCTTCACGC-1_19_5801984_A_T_- AACTTCTTCTTCACGC-1 19 5801984 A T - 1 1 A>T T>A +AAGAACAAGCTCGACC-1_3_80705808_A_T_- AAGAACAAGCTCGACC-1 3 80705808 A T - 1 1 A>T T>A +AACCAACTCGATGGAG-1_16_91563850_A_C_+ AACCAACTCGATGGAG-1 16 91563850 A C + 1 1 A>C A>C +AACTTCTCATGAATAG-1_16_40516280_G_T_+ AACTTCTCATGAATAG-1 16 40516280 G T + 1 1 G>T G>T +AAACCCACAATCTCTT-1_18_82585563_G_C_+ AAACCCACAATCTCTT-1 18 82585563 G C + 1 1 G>C G>C +AAATGGAGTGAGACGT-1_16_57391454_T_C_- AAATGGAGTGAGACGT-1 16 57391454 T C - 1 1 T>C A>G +AACGTCATCTGGCTGG-1_12_40533244_A_G_+ AACGTCATCTGGCTGG-1 12 40533244 A G + 1 1 A>G A>G +AAAGGTACACCGTGCA-1_17_65985125_A_T_- AAAGGTACACCGTGCA-1 17 65985125 A T - 1 1 A>T T>A +AAACCCAAGTTTAGGA-1_11_112785400_C_A_+ AAACCCAAGTTTAGGA-1 11 112785400 C A + 1 1 C>A C>A +AAACGCTGTCATGGCC-1_17_39848018_C_T_+ AAACGCTGTCATGGCC-1 17 39848018 C T + 1 1 C>T C>T +AACGGGAAGTTGCCCG-1_8_120674192_A_G_+ AACGGGAAGTTGCCCG-1 8 120674192 A G + 1 1 A>G A>G +AAACCCAAGTTTAGGA-1_5_146261271_T_G_+ AAACCCAAGTTTAGGA-1 5 146261271 T G + 1 1 T>G T>G +AACACACAGAGAGCCT-1_2_37566390_T_C_+ AACACACAGAGAGCCT-1 2 37566390 T C + 1 1 T>C T>C +AAGACTCTCGAGTACT-1_2_102789455_A_G_+ AAGACTCTCGAGTACT-1 2 102789455 A G + 1 1 A>G A>G +AACGGGAGTGACTAAA-1_17_39848018_C_T_+ AACGGGAGTGACTAAA-1 17 39848018 C T + 1 1 C>T C>T +AACACACAGGATCACG-1_11_98768713_T_C_+ AACACACAGGATCACG-1 11 98768713 T C + 1 1 T>C T>C +AAGACAATCTCTATAC-1_1_164438222_G_A_- AAGACAATCTCTATAC-1 1 164438222 G A - 1 1 G>A C>T +AACAAGAGTGGCGTAA-1_17_39847153_A_G_+ AACAAGAGTGGCGTAA-1 17 39847153 A G + 1 1 A>G A>G +AAATGGAGTTATCCAG-1_2_42420732_C_T_- AAATGGAGTTATCCAG-1 2 42420732 C T - 1 1 C>T G>A +AACGAAATCCTGTAAG-1_11_36677862_G_A_- AACGAAATCCTGTAAG-1 11 36677862 G A - 1 1 G>A C>T +AAGAACATCGCTCTCA-1_17_39847825_G_C_+ AAGAACATCGCTCTCA-1 17 39847825 G C + 1 1 G>C G>C +AAAGGTAGTATGCTAC-1_15_44686929_T_C_- AAAGGTAGTATGCTAC-1 15 44686929 T C - 1 1 T>C A>G +AACAAGAAGCAATTAG-1_X_77662986_G_A_+ AACAAGAAGCAATTAG-1 X 77662986 G A + 1 1 G>A G>A +AAGAACAAGGTCGAGT-1_3_88744933_G_A_- AAGAACAAGGTCGAGT-1 3 88744933 G A - 1 1 G>A C>T +AACGAAATCTTGAACG-1_11_17200175_G_A_+ AACGAAATCTTGAACG-1 11 17200175 G A + 1 1 G>A G>A +AAATGGAAGCCGTCGT-1_9_40804938_G_T_+ AAATGGAAGCCGTCGT-1 9 40804938 G T + 1 1 G>T G>T +AACACACGTGGATCAG-1_7_25802569_G_A_- AACACACGTGGATCAG-1 7 25802569 G A - 1 1 G>A C>T +AAATGGAAGCAGATAT-1_X_134804277_A_G_- AAATGGAAGCAGATAT-1 X 134804277 A G - 1 1 A>G T>C +AACCAACAGGTCACTT-1_5_36795819_G_A_- AACCAACAGGTCACTT-1 5 36795819 G A - 1 1 G>A C>T +AACCTTTAGACCAGAC-1_10_3926438_T_C_+ AACCTTTAGACCAGAC-1 10 3926438 T C + 1 1 T>C T>C +AACCACAAGCTTTGTG-1_13_51152309_C_T_+ AACCACAAGCTTTGTG-1 13 51152309 C T + 1 1 C>T C>T +AAACCCATCAAGCCAT-1_9_78478698_G_A_- AAACCCATCAAGCCAT-1 9 78478698 G A - 1 1 G>A C>T +AACCTGACATCATCCC-1_2_78919991_A_C_+ AACCTGACATCATCCC-1 2 78919991 A C + 1 1 A>C A>C +AAATGGATCCCTTGTG-1_13_42866373_T_G_+ AAATGGATCCCTTGTG-1 13 42866373 T G + 1 1 T>G T>G +AAAGTCCCAACCAGAG-1_2_102782177_T_G_+ AAAGTCCCAACCAGAG-1 2 102782177 T G + 1 1 T>G T>G +AAATGGACACCCGTAG-1_7_100814052_T_A_+ AAATGGACACCCGTAG-1 7 100814052 T A + 1 1 T>A T>A +AAGAACAGTAAGATAC-1_X_101322630_T_G_+ AAGAACAGTAAGATAC-1 X 101322630 T G + 1 1 T>G T>G +AAACCCAAGTTTAGGA-1_6_4624261_G_C_+ AAACCCAAGTTTAGGA-1 6 4624261 G C + 1 1 G>C G>C +AAAGTCCTCCGATGCG-1_7_44463127_C_A_+ AAAGTCCTCCGATGCG-1 7 44463127 C A + 1 1 C>A C>A AAAGGGCCATGTCTAG-1_19_5802171_G_A_- AAAGGGCCATGTCTAG-1 19 5802171 G A - 1 2 G>A C>T -AAACCCACAATCTCTT-1_19_46701794_T_G_+ AAACCCACAATCTCTT-1 19 46701794 T G + 1 1 T>G T>G +AACCACAAGCTTTGTG-1_11_32059065_C_T_+ AACCACAAGCTTTGTG-1 11 32059065 C T + 1 1 C>T C>T +AACGTCATCTGGCTGG-1_7_141155821_C_T_+ AACGTCATCTGGCTGG-1 7 141155821 C T + 1 1 C>T C>T +AACCAACTCTGCGATA-1_17_70963798_T_C_+ AACCAACTCTGCGATA-1 17 70963798 T C + 1 1 T>C T>C AACCAACGTCCCTGTT-1_19_5802638_T_C_- AACCAACGTCCCTGTT-1 19 5802638 T C - 1 7 T>C A>G -AAATGGAAGCAGATAT-1_19_60524878_T_C_- AAATGGAAGCAGATAT-1 19 60524878 T C - 1 1 T>C A>G -AACAACCAGTTACTCG-1_19_24678064_A_G_+ AACAACCAGTTACTCG-1 19 24678064 A G + 1 1 A>G A>G -AACCTTTCAGACCTGC-1_19_8834068_T_A_+ AACCTTTCAGACCTGC-1 19 8834068 T A + 1 1 T>A T>A -AACCAACGTGGTATGG-1_19_5801335_G_A_- AACCAACGTGGTATGG-1 19 5801335 G A - 1 1 G>A C>T -AAAGGTAAGGACAGTC-1_19_9984925_C_T_+ AAAGGTAAGGACAGTC-1 19 9984925 C T + 1 1 C>T C>T -AAATGGATCCCTTGTG-1_19_47778911_A_C_- AAATGGATCCCTTGTG-1 19 47778911 A C - 1 1 A>C T>G -AAACGCTCAGTAGGAC-1_19_7215361_G_A_- AAACGCTCAGTAGGAC-1 19 7215361 G A - 1 1 G>A C>T -AACTTCTAGAGGTCGT-1_19_9984821_T_C_+ AACTTCTAGAGGTCGT-1 19 9984821 T C + 1 1 T>C T>C -AAACGAAAGCTTGTGT-1_19_7215251_G_A_- AAACGAAAGCTTGTGT-1 19 7215251 G A - 1 1 G>A C>T -AACCACAAGCTTTGTG-1_19_7425964_G_A_- AACCACAAGCTTTGTG-1 19 7425964 G A - 1 1 G>A C>T -AACTTCTCATGAATAG-1_19_5080831_G_A_- AACTTCTCATGAATAG-1 19 5080831 G A - 1 1 G>A C>T -AAGACAAGTCCACATA-1_19_3527619_A_T_- AAGACAAGTCCACATA-1 19 3527619 A T - 1 1 A>T T>A -AACAGGGCAAACTCGT-1_19_5802608_T_A_- AACAGGGCAAACTCGT-1 19 5802608 T A - 1 6 T>A A>T -AAGACTCGTGTCTTGA-1_19_48804432_A_G_+ AAGACTCGTGTCTTGA-1 19 48804432 A G + 1 1 A>G A>G +AACTTCTAGATACGAT-1_12_32976514_A_T_+ AACTTCTAGATACGAT-1 12 32976514 A T + 1 1 A>T A>T +AACCACAAGCCTTTCC-1_11_62320527_A_G_+ AACCACAAGCCTTTCC-1 11 62320527 A G + 1 1 A>G A>G +AACCTGATCGGATACT-1_19_5802417_T_G_- AACCTGATCGGATACT-1 19 5802417 T G - 1 1 T>G A>C +AACTTCTAGGGATCTG-1_16_67271954_C_T_- AACTTCTAGGGATCTG-1 16 67271954 C T - 1 1 C>T G>A +AACCCAAAGGGCATGT-1_11_68902339_C_T_+ AACCCAAAGGGCATGT-1 11 68902339 C T + 1 1 C>T C>T +AACTTCTAGAACAGGA-1_7_4134751_A_T_+ AACTTCTAGAACAGGA-1 7 4134751 A T + 1 1 A>T A>T +AAACCCACACTGAGGA-1_2_132311810_A_T_+ AAACCCACACTGAGGA-1 2 132311810 A T + 1 1 A>T A>T +AACCTGAAGTCCCAGC-1_2_144142662_A_G_- AACCTGAAGTCCCAGC-1 2 144142662 A G - 1 1 A>G T>C +AAGATAGGTCATCAGT-1_6_143070674_G_A_- AAGATAGGTCATCAGT-1 6 143070674 G A - 1 1 G>A C>T +AACACACTCGAACCTA-1_7_24888385_C_T_+ AACACACTCGAACCTA-1 7 24888385 C T + 1 1 C>T C>T +AACGAAATCCTGTAAG-1_7_80349473_T_G_- AACGAAATCCTGTAAG-1 7 80349473 T G - 1 1 T>G A>C +AACTTCTAGCCTAACT-1_17_81639618_A_T_- AACTTCTAGCCTAACT-1 17 81639618 A T - 1 1 A>T T>A +AAGAACACAACTGATC-1_13_81691969_A_G_- AAGAACACAACTGATC-1 13 81691969 A G - 1 1 A>G T>C +AACCACAAGTGATAGT-1_1_55091271_C_T_+ AACCACAAGTGATAGT-1 1 55091271 C T + 1 1 C>T C>T +AAGACTCGTTGCTCGG-1_1_135527225_C_T_- AAGACTCGTTGCTCGG-1 1 135527225 C T - 1 1 C>T G>A +AAAGAACAGAGGTTAT-1_6_91758583_C_T_+ AAAGAACAGAGGTTAT-1 6 91758583 C T + 1 1 C>T C>T +AAAGTCCTCCTAAGTG-1_10_75771350_T_G_- AAAGTCCTCCTAAGTG-1 10 75771350 T G - 1 1 T>G A>C +AACCCAATCCCTCATG-1_2_42189682_T_A_- AACCCAATCCCTCATG-1 2 42189682 T A - 1 1 T>A A>T +AACCACAAGCTTTGTG-1_15_99497208_G_A_- AACCACAAGCTTTGTG-1 15 99497208 G A - 1 1 G>A C>T +AACCTTTAGCGTGCTC-1_19_5802657_G_A_- AACCTTTAGCGTGCTC-1 19 5802657 G A - 1 7 G>A C>T +AACCTTTCACACCTGG-1_4_138457021_T_A_+ AACCTTTCACACCTGG-1 4 138457021 T A + 1 1 T>A T>A +AACAACCAGGAGTATT-1_17_39847390_A_T_+ AACAACCAGGAGTATT-1 17 39847390 A T + 1 1 A>T A>T +AAGACAAGTTTATGCG-1_7_25316148_G_A_+ AAGACAAGTTTATGCG-1 7 25316148 G A + 1 1 G>A G>A +AAACCCACAGCTGTGC-1_11_90278414_C_T_+ AAACCCACAGCTGTGC-1 11 90278414 C T + 1 1 C>T C>T +AACAAAGGTATCGCGC-1_8_13781743_C_T_+ AACAAAGGTATCGCGC-1 8 13781743 C T + 1 1 C>T C>T +AAGACAAGTACTGACT-1_3_108361302_T_C_+ AAGACAAGTACTGACT-1 3 108361302 T C + 1 1 T>C T>C +AACGTCAAGAACTCCT-1_17_39847403_T_G_- AACGTCAAGAACTCCT-1 17 39847403 T G - 1 1 T>G A>C +AAGATAGAGCTTGTGT-1_6_124704574_C_T_- AAGATAGAGCTTGTGT-1 6 124704574 C T - 1 1 C>T G>A +AACCTTTTCCGTGTGG-1_9_3000560_T_C_- AACCTTTTCCGTGTGG-1 9 3000560 T C - 1 1 T>C A>G +AAGAACAGTAAGATAC-1_11_36861172_G_A_- AAGAACAGTAAGATAC-1 11 36861172 G A - 1 1 G>A C>T +AAACGAACACGACGAA-1_4_56875848_T_C_- AAACGAACACGACGAA-1 4 56875848 T C - 1 1 T>C A>G +AACAAAGAGTGACCTT-1_9_123462100_A_T_+ AACAAAGAGTGACCTT-1 9 123462100 A T + 1 1 A>T A>T +AACACACAGTTTGAGA-1_16_57391532_A_G_- AACACACAGTTTGAGA-1 16 57391532 A G - 1 1 A>G T>C +AACAAAGCATTGCTGA-1_12_69159070_A_G_- AACAAAGCATTGCTGA-1 12 69159070 A G - 1 1 A>G T>C +AAATGGACATAAGATG-1_X_73853928_A_T_- AAATGGACATAAGATG-1 X 73853928 A T - 1 1 A>T T>A +AAACCCACAATCTCTT-1_18_82585567_C_G_+ AAACCCACAATCTCTT-1 18 82585567 C G + 1 1 C>G C>G +AAAGTCCTCCGATGCG-1_14_93291825_C_G_- AAAGTCCTCCGATGCG-1 14 93291825 C G - 1 1 C>G G>C +AACAGGGGTGCACATT-1_12_41256896_A_G_+ AACAGGGGTGCACATT-1 12 41256896 A G + 1 1 A>G A>G +AAAGTCCTCTTCCCGA-1_2_77553882_T_C_- AAAGTCCTCTTCCCGA-1 2 77553882 T C - 1 1 T>C A>G +AAAGGGCTCTCACTCG-1_4_123512819_A_G_- AAAGGGCTCTCACTCG-1 4 123512819 A G - 1 1 A>G T>C +AAAGAACCACTTACAG-1_17_39848100_A_T_+ AAAGAACCACTTACAG-1 17 39848100 A T + 1 1 A>T A>T +AAACGCTGTCAACACT-1_14_65981384_C_T_+ AAACGCTGTCAACACT-1 14 65981384 C T + 1 1 C>T C>T +AAATGGAGTGGTCAAG-1_17_39847056_G_C_+ AAATGGAGTGGTCAAG-1 17 39847056 G C + 1 1 G>C G>C +AACAACCGTTGTAAAG-1_1_131830489_G_T_+ AACAACCGTTGTAAAG-1 1 131830489 G T + 1 1 G>T G>T +AACAGGGCAGATTTCG-1_MT_7521_T_C_+ AACAGGGCAGATTTCG-1 MT 7521 T C + 1 1 T>C T>C +AAAGGTACACAGTCAT-1_9_3024448_C_T_- AAAGGTACACAGTCAT-1 9 3024448 C T - 1 1 C>T G>A +AACTTCTCACTAACGT-1_13_86046423_G_A_- AACTTCTCACTAACGT-1 13 86046423 G A - 1 1 G>A C>T +AACCTGATCGCTCATC-1_10_102106879_C_A_+ AACCTGATCGCTCATC-1 10 102106879 C A + 1 1 C>A C>A +AAGACTCGTGGTACAG-1_5_112213390_G_T_- AAGACTCGTGGTACAG-1 5 112213390 G T - 1 1 G>T C>A +AACCTTTCAGTAGAGC-1_2_29713014_A_T_+ AACCTTTCAGTAGAGC-1 2 29713014 A T + 1 1 A>T A>T +AACAAAGTCCCGTTGT-1_17_39847403_T_G_+ AACAAAGTCCCGTTGT-1 17 39847403 T G + 1 1 T>G T>G +AACGAAAAGTGATAAC-1_11_51600988_A_C_- AACGAAAAGTGATAAC-1 11 51600988 A C - 1 1 A>C T>G +AACCCAAGTTGAGAGC-1_9_61913327_G_A_- AACCCAAGTTGAGAGC-1 9 61913327 G A - 1 1 G>A C>T +AAGAACAAGAAGGGAT-1_5_146261076_T_C_+ AAGAACAAGAAGGGAT-1 5 146261076 T C + 1 1 T>C T>C +AACCTTTCACACCTGG-1_19_5801965_A_G_- AACCTTTCACACCTGG-1 19 5801965 A G - 1 2 A>G T>C +AACAGGGCAAACTCGT-1_6_77482257_A_G_- AACAGGGCAAACTCGT-1 6 77482257 A G - 1 1 A>G T>C +AAAGTCCCACAAATGA-1_8_70895695_C_T_- AAAGTCCCACAAATGA-1 8 70895695 C T - 1 1 C>T G>A +AACCTGACATGAGATA-1_19_24294840_G_A_- AACCTGACATGAGATA-1 19 24294840 G A - 1 1 G>A C>T +AACACACCATAACGGG-1_1_91217545_C_T_+ AACACACCATAACGGG-1 1 91217545 C T + 1 1 C>T C>T +AAGACAAAGAGTTCGG-1_X_166385912_C_T_+ AAGACAAAGAGTTCGG-1 X 166385912 C T + 1 1 C>T C>T +AAGATAGGTCATCAGT-1_15_25363370_A_T_- AAGATAGGTCATCAGT-1 15 25363370 A T - 1 1 A>T T>A +AACACACCAGACCAGA-1_7_100644053_C_T_- AACACACCAGACCAGA-1 7 100644053 C T - 1 1 C>T G>A +AACAACCGTATGTCTG-1_11_66056184_T_A_- AACAACCGTATGTCTG-1 11 66056184 T A - 1 1 T>A A>T +AACAACCGTCTCAGAT-1_3_136935363_A_G_+ AACAACCGTCTCAGAT-1 3 136935363 A G + 1 1 A>G A>G +AACGTCATCTGGCTGG-1_3_8561460_C_T_+ AACGTCATCTGGCTGG-1 3 8561460 C T + 1 1 C>T C>T +AACAACCCACACACGC-1_2_178336004_C_T_+ AACAACCCACACACGC-1 2 178336004 C T + 1 1 C>T C>T +AAGACAAAGGGCAGGA-1_1_120342777_T_A_+ AAGACAAAGGGCAGGA-1 1 120342777 T A + 1 1 T>A T>A +AACCTGACATCATCCC-1_17_39847992_A_T_- AACCTGACATCATCCC-1 17 39847992 A T - 1 2 A>T T>A +AAAGTCCTCTACCTTA-1_17_39848018_C_T_+ AAAGTCCTCTACCTTA-1 17 39848018 C T + 1 1 C>T C>T +AACACACCAGACCAGA-1_6_136872665_C_T_- AACACACCAGACCAGA-1 6 136872665 C T - 1 1 C>T G>A +AACACACTCTGCGGGT-1_5_146261106_C_G_+ AACACACTCTGCGGGT-1 5 146261106 C G + 1 1 C>G C>G +AAGATAGCAGCAATTC-1_9_3000506_C_A_- AAGATAGCAGCAATTC-1 9 3000506 C A - 1 1 C>A G>T +AAAGTCCGTGTTCAGT-1_7_30958055_A_G_- AAAGTCCGTGTTCAGT-1 7 30958055 A G - 1 1 A>G T>C +AACGGGAGTAAGGCCA-1_9_3037748_A_T_- AACGGGAGTAAGGCCA-1 9 3037748 A T - 1 1 A>T T>A +AAAGGGCAGGAAGAAC-1_17_39848018_C_T_+ AAAGGGCAGGAAGAAC-1 17 39848018 C T + 1 1 C>T C>T +AAACCCAGTAGGACTG-1_MT_6588_G_A_+ AAACCCAGTAGGACTG-1 MT 6588 G A + 1 1 G>A G>A +AAACGAAGTGTTTACG-1_15_97790695_C_G_+ AAACGAAGTGTTTACG-1 15 97790695 C G + 1 1 C>G C>G +AAATGGAAGCAGATAT-1_14_52160751_G_A_+ AAATGGAAGCAGATAT-1 14 52160751 G A + 1 1 G>A G>A +AAAGAACCAGCTCCTT-1_9_3000527_T_C_- AAAGAACCAGCTCCTT-1 9 3000527 T C - 1 1 T>C A>G +AACACACTCTGCGGGT-1_5_146261076_T_C_+ AACACACTCTGCGGGT-1 5 146261076 T C + 1 1 T>C T>C +AAAGTCCAGTCGGCCT-1_X_7653162_C_T_+ AAAGTCCAGTCGGCCT-1 X 7653162 C T + 1 1 C>T C>T +AAAGAACCAACTTCTT-1_11_6419684_C_T_+ AAAGAACCAACTTCTT-1 11 6419684 C T + 1 1 C>T C>T +AAATGGATCTGCGGCA-1_9_50521716_T_C_- AAATGGATCTGCGGCA-1 9 50521716 T C - 1 1 T>C A>G +AACGGGAAGTTGCCCG-1_12_72217444_G_A_- AACGGGAAGTTGCCCG-1 12 72217444 G A - 1 1 G>A C>T +AACCTGATCTCTCTAA-1_X_81097836_G_A_+ AACCTGATCTCTCTAA-1 X 81097836 G A + 1 1 G>A G>A +AACCATGGTGAGTTTC-1_9_14784242_A_T_- AACCATGGTGAGTTTC-1 9 14784242 A T - 1 1 A>T T>A +AAACCCACATATCTGG-1_1_23787352_T_C_+ AAACCCACATATCTGG-1 1 23787352 T C + 1 1 T>C T>C +AACCAACCAATAGGGC-1_15_25364403_A_G_- AACCAACCAATAGGGC-1 15 25364403 A G - 1 1 A>G T>C +AACCAACAGTAGGATT-1_13_119707848_T_A_+ AACCAACAGTAGGATT-1 13 119707848 T A + 1 1 T>A T>A +AAAGTCCTCCGATGCG-1_10_9828369_T_C_- AAAGTCCTCCGATGCG-1 10 9828369 T C - 1 1 T>C A>G +AACCTTTCACTCAGAT-1_17_39848018_C_T_+ AACCTTTCACTCAGAT-1 17 39848018 C T + 1 1 C>T C>T +AAACGCTAGGTTACAA-1_10_5021172_T_C_- AAACGCTAGGTTACAA-1 10 5021172 T C - 1 1 T>C A>G +AACCATGTCCAATCTT-1_8_85287710_G_T_- AACCATGTCCAATCTT-1 8 85287710 G T - 1 1 G>T C>A +AACGTCAAGCTAAACA-1_2_3214648_A_T_+ AACGTCAAGCTAAACA-1 2 3214648 A T + 1 1 A>T A>T +AACAGGGCACCTCTAC-1_17_39847234_A_G_- AACAGGGCACCTCTAC-1 17 39847234 A G - 1 1 A>G T>C +AACCACAAGCTTTGTG-1_12_76798198_G_A_- AACCACAAGCTTTGTG-1 12 76798198 G A - 1 1 G>A C>T +AACGTCAAGACATATG-1_9_123461940_T_G_+ AACGTCAAGACATATG-1 9 123461940 T G + 1 1 T>G T>G +AACCCAAAGGTATAGT-1_8_94154103_C_G_+ AACCCAAAGGTATAGT-1 8 94154103 C G + 1 1 C>G C>G +AACAACCTCATTTACC-1_6_36715460_A_C_- AACAACCTCATTTACC-1 6 36715460 A C - 1 1 A>C T>G +AACCTGAGTCTGTAGT-1_16_23334614_T_C_+ AACCTGAGTCTGTAGT-1 16 23334614 T C + 1 1 T>C T>C +AACAAAGAGGCATCAG-1_13_86045851_C_T_- AACAAAGAGGCATCAG-1 13 86045851 C T - 1 1 C>T G>A +AAGAACACAGCACAGA-1_10_109729700_A_T_- AAGAACACAGCACAGA-1 10 109729700 A T - 1 1 A>T T>A +AAGACTCGTCAAGTTC-1_16_57391640_C_T_- AAGACTCGTCAAGTTC-1 16 57391640 C T - 1 2 C>T G>A +AAACGCTAGGTTACAA-1_X_167207352_G_A_- AAACGCTAGGTTACAA-1 X 167207352 G A - 1 1 G>A C>T +AACCCAAGTATCGATC-1_8_50767542_T_G_- AACCCAAGTATCGATC-1 8 50767542 T G - 1 1 T>G A>C +AACAAAGCACGCAGTC-1_19_5802493_T_A_- AACAAAGCACGCAGTC-1 19 5802493 T A - 1 1 T>A A>T +AACGAAACATCTCAAG-1_2_103981545_C_T_+ AACGAAACATCTCAAG-1 2 103981545 C T + 1 1 C>T C>T +AAACGAACAACTGGTT-1_1_55003426_G_T_- AAACGAACAACTGGTT-1 1 55003426 G T - 1 1 G>T C>A +AACAAAGAGGAGAATG-1_12_71992318_C_T_+ AACAAAGAGGAGAATG-1 12 71992318 C T + 1 1 C>T C>T +AAAGGTAGTACACGCC-1_17_39847426_T_C_- AAAGGTAGTACACGCC-1 17 39847426 T C - 1 1 T>C A>G +AAAGGTATCGATTGAC-1_9_3017997_T_C_- AAAGGTATCGATTGAC-1 9 3017997 T C - 1 1 T>C A>G +AAAGTCCGTGAGTAAT-1_17_3163116_C_T_+ AAAGTCCGTGAGTAAT-1 17 3163116 C T + 1 1 C>T C>T +AAAGGGCGTGGTCTTA-1_14_64588964_T_A_+ AAAGGGCGTGGTCTTA-1 14 64588964 T A + 1 1 T>A T>A +AACGGGAGTCCAGGTC-1_11_53416601_C_T_+ AACGGGAGTCCAGGTC-1 11 53416601 C T + 1 1 C>T C>T +AACTTCTCAGAGGACT-1_2_98666780_T_G_- AACTTCTCAGAGGACT-1 2 98666780 T G - 1 1 T>G A>C +AACCAACGTAACAGGC-1_8_95714818_C_T_+ AACCAACGTAACAGGC-1 8 95714818 C T + 1 1 C>T C>T +AAAGGATCATTCAGGT-1_6_49258824_G_T_- AAAGGATCATTCAGGT-1 6 49258824 G T - 1 1 G>T C>A +AACCAACTCATAGACC-1_17_12430859_G_A_- AACCAACTCATAGACC-1 17 12430859 G A - 1 1 G>A C>T +AACGGGATCAGGAACG-1_9_104215830_A_T_- AACGGGATCAGGAACG-1 9 104215830 A T - 1 1 A>T T>A +AACGTCATCTGGCTGG-1_4_136050002_G_A_- AACGTCATCTGGCTGG-1 4 136050002 G A - 1 1 G>A C>T +AAACGCTGTTTGACAC-1_9_3024591_C_A_- AAACGCTGTTTGACAC-1 9 3024591 C A - 1 1 C>A G>T +AAATGGAAGCAGATAT-1_16_59978415_G_T_- AAATGGAAGCAGATAT-1 16 59978415 G T - 1 1 G>T C>A +AACAGGGTCGGTCGGT-1_16_57391677_C_G_- AACAGGGTCGGTCGGT-1 16 57391677 C G - 1 1 C>G G>C +AAGAACAAGTCGCCCA-1_17_39847754_C_A_+ AAGAACAAGTCGCCCA-1 17 39847754 C A + 1 1 C>A C>A +AAAGAACTCATTTACC-1_5_33247933_G_A_- AAAGAACTCATTTACC-1 5 33247933 G A - 1 1 G>A C>T +AAGACTCCACCGGTCA-1_5_146261076_T_C_+ AAGACTCCACCGGTCA-1 5 146261076 T C + 1 1 T>C T>C +AAAGGTAAGACTTCAC-1_11_29742703_A_G_+ AAAGGTAAGACTTCAC-1 11 29742703 A G + 1 1 A>G A>G +AAAGGGCCACACTTAG-1_9_40785053_A_T_+ AAAGGGCCACACTTAG-1 9 40785053 A T + 1 1 A>T A>T +AAAGGGCCACTCAGAT-1_9_3000569_T_A_- AAAGGGCCACTCAGAT-1 9 3000569 T A - 1 1 T>A A>T +AAACCCACACCGTGGT-1_9_121490014_G_A_- AAACCCACACCGTGGT-1 9 121490014 G A - 1 2 G>A C>T +AAGACTCCACCGGTCA-1_5_146261080_C_A_+ AAGACTCCACCGGTCA-1 5 146261080 C A + 1 1 C>A C>A +AAAGGTATCTCACTCG-1_7_126795366_G_A_- AAAGGTATCTCACTCG-1 7 126795366 G A - 1 1 G>A C>T +AACAAGACAGATCCTA-1_5_146261004_G_C_+ AACAAGACAGATCCTA-1 5 146261004 G C + 1 1 G>C G>C +AACTTCTCAGCGGATA-1_3_33811697_T_A_+ AACTTCTCAGCGGATA-1 3 33811697 T A + 1 1 T>A T>A +AACCTTTTCCTAGCGG-1_16_57391680_C_T_- AACCTTTTCCTAGCGG-1 16 57391680 C T - 1 1 C>T G>A +AAGAACACAACTGATC-1_5_57729296_G_A_+ AAGAACACAACTGATC-1 5 57729296 G A + 1 1 G>A G>A +AACTTCTCATGAATAG-1_11_58061756_G_A_+ AACTTCTCATGAATAG-1 11 58061756 G A + 1 1 G>A G>A +AAAGAACTCGTGGGAA-1_5_92346850_G_A_- AAAGAACTCGTGGGAA-1 5 92346850 G A - 1 1 G>A C>T +AACAAAGCAAGCAATA-1_9_3024157_A_G_- AACAAAGCAAGCAATA-1 9 3024157 A G - 1 1 A>G T>C +AAGACTCTCGAGTACT-1_10_128625252_G_A_- AAGACTCTCGAGTACT-1 10 128625252 G A - 1 1 G>A C>T +AAACCCACATATCTCT-1_8_122902034_T_C_- AAACCCACATATCTCT-1 8 122902034 T C - 1 1 T>C A>G +AACAAAGAGTGGAATT-1_5_146261122_A_G_+ AACAAAGAGTGGAATT-1 5 146261122 A G + 1 1 A>G A>G +AACCTTTTCCGTGTGG-1_14_104715799_C_G_+ AACCTTTTCCGTGTGG-1 14 104715799 C G + 1 1 C>G C>G +AAGACTCCACATACTG-1_14_30773865_T_C_- AAGACTCCACATACTG-1 14 30773865 T C - 1 1 T>C A>G +AACTTCTCAGCGGATA-1_4_94544442_G_A_- AACTTCTCAGCGGATA-1 4 94544442 G A - 1 1 G>A C>T +AACCCAATCTTGCAAG-1_14_38582042_T_C_- AACCCAATCTTGCAAG-1 14 38582042 T C - 1 1 T>C A>G +AACGGGACATTCCTAT-1_17_39848062_C_A_+ AACGGGACATTCCTAT-1 17 39848062 C A + 1 1 C>A C>A +AAAGGGCCAACCAATC-1_16_57391677_C_G_- AAAGGGCCAACCAATC-1 16 57391677 C G - 1 1 C>G G>C +AAAGGGCCACTCAGAT-1_9_3000600_G_T_- AAAGGGCCACTCAGAT-1 9 3000600 G T - 1 1 G>T C>A +AACCCAAGTTGAGAGC-1_3_89249099_C_T_+ AACCCAAGTTGAGAGC-1 3 89249099 C T + 1 1 C>T C>T +AACCTTTTCCGTGTGG-1_1_52657680_A_T_- AACCTTTTCCGTGTGG-1 1 52657680 A T - 1 1 A>T T>A +AAAGGATAGTTCCGGC-1_9_3000588_G_T_- AAAGGATAGTTCCGGC-1 9 3000588 G T - 1 1 G>T C>A +AACCAACTCGATGGAG-1_14_29974750_C_T_+ AACCAACTCGATGGAG-1 14 29974750 C T + 1 1 C>T C>T +AAACCCAGTGGTAATA-1_5_122456633_G_A_- AAACCCAGTGGTAATA-1 5 122456633 G A - 1 1 G>A C>T +AAACGAAAGGTAGTCG-1_2_71543621_C_T_- AAACGAAAGGTAGTCG-1 2 71543621 C T - 1 1 C>T G>A +AACAACCGTCATCGGC-1_2_32762114_G_C_+ AACAACCGTCATCGGC-1 2 32762114 G C + 1 1 G>C G>C +AACCTGATCAGAGCAG-1_4_116691912_C_T_+ AACCTGATCAGAGCAG-1 4 116691912 C T + 1 1 C>T C>T +AACGTCATCTGGCTGG-1_10_128090163_C_T_+ AACGTCATCTGGCTGG-1 10 128090163 C T + 1 1 C>T C>T +AAGACAATCTTAGGAC-1_17_33938925_C_T_- AAGACAATCTTAGGAC-1 17 33938925 C T - 1 1 C>T G>A +AAAGTCCGTACGTACT-1_8_125107566_C_A_+ AAAGTCCGTACGTACT-1 8 125107566 C A + 1 1 C>A C>A +AAGATAGGTCATCAGT-1_15_48206627_A_G_- AAGATAGGTCATCAGT-1 15 48206627 A G - 1 1 A>G T>C +AACCAACGTTTCGTGA-1_10_32571533_G_T_- AACCAACGTTTCGTGA-1 10 32571533 G T - 1 1 G>T C>A +AAAGTCCGTGACTGTT-1_11_74696929_T_G_- AAAGTCCGTGACTGTT-1 11 74696929 T G - 1 1 T>G A>C +AAACGAAAGGTAGTCG-1_6_124431044_G_T_- AAACGAAAGGTAGTCG-1 6 124431044 G T - 1 1 G>T C>A +AAACGCTTCAGCAGAG-1_1_192139265_C_T_+ AAACGCTTCAGCAGAG-1 1 192139265 C T + 1 1 C>T C>T +AAAGTCCGTGACTGTT-1_12_99645608_T_C_+ AAAGTCCGTGACTGTT-1 12 99645608 T C + 1 1 T>C T>C +AACTTCTCACACGTGC-1_14_54940633_G_C_+ AACTTCTCACACGTGC-1 14 54940633 G C + 1 1 G>C G>C +AAACGAAGTGTTTACG-1_15_97790693_T_G_+ AAACGAAGTGTTTACG-1 15 97790693 T G + 1 1 T>G T>G +AACGTCATCTATACGG-1_1_84370540_G_A_- AACGTCATCTATACGG-1 1 84370540 G A - 1 1 G>A C>T +AACTTCTCACACGTGC-1_10_64396269_T_C_+ AACTTCTCACACGTGC-1 10 64396269 T C + 1 1 T>C T>C +AACAACCAGTAATACG-1_7_16159224_C_T_+ AACAACCAGTAATACG-1 7 16159224 C T + 1 1 C>T C>T +AAAGTCCAGTATAACG-1_17_39847403_T_G_- AAAGTCCAGTATAACG-1 17 39847403 T G - 1 1 T>G A>C +AACGAAAAGGTGATAT-1_17_39847403_T_G_+ AACGAAAAGGTGATAT-1 17 39847403 T G + 1 1 T>G T>G +AACAAGAGTAGAATGT-1_2_30097521_T_C_- AACAAGAGTAGAATGT-1 2 30097521 T C - 1 1 T>C A>G +AAGATAGGTCATCAGT-1_15_25363357_T_C_- AAGATAGGTCATCAGT-1 15 25363357 T C - 1 1 T>C A>G +AAACGCTCAGTAGGAC-1_15_84076207_G_A_- AAACGCTCAGTAGGAC-1 15 84076207 G A - 1 1 G>A C>T +AACCATGTCATCGCTC-1_10_116425464_C_A_- AACCATGTCATCGCTC-1 10 116425464 C A - 1 1 C>A G>T +AAACGAAAGGTAGTCG-1_15_36771919_C_A_- AAACGAAAGGTAGTCG-1 15 36771919 C A - 1 1 C>A G>T +AAACGAACATCTAGAC-1_12_100207186_A_G_+ AAACGAACATCTAGAC-1 12 100207186 A G + 1 1 A>G A>G +AACCAACGTGCATGTT-1_7_127583206_G_C_+ AACCAACGTGCATGTT-1 7 127583206 G C + 1 1 G>C G>C +AACCAACCAGTCGCTG-1_9_64178229_C_T_+ AACCAACCAGTCGCTG-1 9 64178229 C T + 1 1 C>T C>T +AAAGGGCTCTGCTAGA-1_10_79977410_A_G_- AAAGGGCTCTGCTAGA-1 10 79977410 A G - 1 1 A>G T>C +AAAGTCCAGTCGGCCT-1_2_125737130_G_A_- AAAGTCCAGTCGGCCT-1 2 125737130 G A - 1 1 G>A C>T +AAACGAAAGCGAACTG-1_X_42109368_C_T_+ AAACGAAAGCGAACTG-1 X 42109368 C T + 1 1 C>T C>T +AAAGGATGTACCATAC-1_3_152232838_C_T_+ AAAGGATGTACCATAC-1 3 152232838 C T + 1 1 C>T C>T +AACACACTCTGCGGGT-1_2_92945963_C_T_+ AACACACTCTGCGGGT-1 2 92945963 C T + 1 1 C>T C>T +AAACGAACAAGATTGA-1_2_150633060_C_T_- AAACGAACAAGATTGA-1 2 150633060 C T - 1 1 C>T G>A +AACTTCTTCTTCACGC-1_X_20615428_T_A_- AACTTCTTCTTCACGC-1 X 20615428 T A - 1 1 T>A A>T +AAAGGATGTACCATAC-1_17_39847607_T_C_+ AAAGGATGTACCATAC-1 17 39847607 T C + 1 1 T>C T>C +AAACGAAAGACAACAT-1_19_9984863_G_A_+ AAACGAAAGACAACAT-1 19 9984863 G A + 1 1 G>A G>A +AAATGGAGTGAGACGT-1_17_39847403_T_G_+ AAATGGAGTGAGACGT-1 17 39847403 T G + 1 1 T>G T>G +AAAGGGCCATGTCTAG-1_19_7206271_G_C_- AAAGGGCCATGTCTAG-1 19 7206271 G C - 1 1 G>C C>G +AACAACCAGTAATACG-1_X_41549472_G_A_+ AACAACCAGTAATACG-1 X 41549472 G A + 1 1 G>A G>A +AACAAAGAGGTGCGAT-1_5_112419343_T_G_- AACAAAGAGGTGCGAT-1 5 112419343 T G - 1 1 T>G A>C +AACCTGACAGCTGTCG-1_8_57456384_T_A_+ AACCTGACAGCTGTCG-1 8 57456384 T A + 1 1 T>A T>A +AAAGTCCCACGCTTAA-1_9_110102597_T_C_- AAAGTCCCACGCTTAA-1 9 110102597 T C - 1 1 T>C A>G +AAACGCTTCCATAGAC-1_1_128207250_G_T_+ AAACGCTTCCATAGAC-1 1 128207250 G T + 1 1 G>T G>T +AACCAACTCGATGGAG-1_1_39370137_A_G_+ AACCAACTCGATGGAG-1 1 39370137 A G + 1 1 A>G A>G +AACCTGAGTCTGTAGT-1_16_23334600_A_T_+ AACCTGAGTCTGTAGT-1 16 23334600 A T + 1 1 A>T A>T +AAGAACAGTTGGAGGT-1_5_84417002_G_C_- AAGAACAGTTGGAGGT-1 5 84417002 G C - 1 1 G>C C>G +AAACCCAGTATGTCCA-1_12_99645608_T_C_+ AAACCCAGTATGTCCA-1 12 99645608 T C + 1 1 T>C T>C +AAGACTCGTTGCTCGG-1_9_70554702_C_A_+ AAGACTCGTTGCTCGG-1 9 70554702 C A + 1 1 C>A C>A +AAAGTCCTCCCAGCGA-1_14_73362478_C_T_- AAAGTCCTCCCAGCGA-1 14 73362478 C T - 1 1 C>T G>A +AAAGAACAGAATACAC-1_2_32308473_C_T_- AAAGAACAGAATACAC-1 2 32308473 C T - 1 1 C>T G>A +AACTTCTCACACGTGC-1_11_5541279_G_T_- AACTTCTCACACGTGC-1 11 5541279 G T - 1 1 G>T C>A +AACCAACTCTATACGG-1_11_80033918_T_A_+ AACCAACTCTATACGG-1 11 80033918 T A + 1 1 T>A T>A +AACGTCATCTGGCTGG-1_7_126795451_C_T_- AACGTCATCTGGCTGG-1 7 126795451 C T - 1 1 C>T G>A +AACCCAAGTCTGTCAA-1_4_129118467_G_A_- AACCCAAGTCTGTCAA-1 4 129118467 G A - 1 1 G>A C>T +AAGACTCGTTGCTCGG-1_1_135527169_C_G_- AAGACTCGTTGCTCGG-1 1 135527169 C G - 1 1 C>G G>C +AAAGGTACAGACCAAG-1_1_167372525_C_T_- AAAGGTACAGACCAAG-1 1 167372525 C T - 1 1 C>T G>A +AAACGAAGTGTTTACG-1_18_40211245_A_G_- AAACGAAGTGTTTACG-1 18 40211245 A G - 1 1 A>G T>C +AACCTTTGTCTCAGGC-1_11_101190361_C_T_+ AACCTTTGTCTCAGGC-1 11 101190361 C T + 1 1 C>T C>T +AAGAACAGTAAGATAC-1_X_101322626_T_A_+ AAGAACAGTAAGATAC-1 X 101322626 T A + 1 1 T>A T>A +AACCAACGTGGACTAG-1_12_100206168_A_T_+ AACCAACGTGGACTAG-1 12 100206168 A T + 1 1 A>T A>T +AACAGGGGTGCCAAGA-1_17_39847120_C_A_+ AACAGGGGTGCCAAGA-1 17 39847120 C A + 1 1 C>A C>A +AACCTTTTCCGTGTGG-1_9_3038036_T_A_- AACCTTTTCCGTGTGG-1 9 3038036 T A - 1 1 T>A A>T +AACAACCTCATTTACC-1_11_50293967_G_A_- AACAACCTCATTTACC-1 11 50293967 G A - 1 1 G>A C>T +AAGATAGGTACGCGTC-1_1_79434858_G_A_- AAGATAGGTACGCGTC-1 1 79434858 G A - 1 1 G>A C>T +AAAGGGCAGGACATCG-1_10_94563910_C_G_+ AAAGGGCAGGACATCG-1 10 94563910 C G + 1 1 C>G C>G +AACTTCTCAGGACTTT-1_18_40205739_A_T_- AACTTCTCAGGACTTT-1 18 40205739 A T - 1 1 A>T T>A +AACAACCCATTCGGGC-1_2_98662912_G_T_+ AACAACCCATTCGGGC-1 2 98662912 G T + 1 1 G>T G>T +AAATGGACACGGAAGT-1_15_98950091_C_T_- AAATGGACACGGAAGT-1 15 98950091 C T - 1 1 C>T G>A +AAAGAACCATGCCGCA-1_11_75764685_G_A_+ AAAGAACCATGCCGCA-1 11 75764685 G A + 1 1 G>A G>A +AAACGAAAGACAACAT-1_10_80243630_G_A_+ AAACGAAAGACAACAT-1 10 80243630 G A + 1 1 G>A G>A +AAATGGAAGCAGATAT-1_14_8223564_T_A_+ AAATGGAAGCAGATAT-1 14 8223564 T A + 1 1 T>A T>A +AAACCCAGTCAAATCC-1_4_129111852_G_A_- AAACCCAGTCAAATCC-1 4 129111852 G A - 1 1 G>A C>T +AAACGCTTCGGTTAGT-1_X_136837631_T_C_+ AAACGCTTCGGTTAGT-1 X 136837631 T C + 1 2 T>C T>C +AACCACAAGCTTTGTG-1_4_91251148_G_A_- AACCACAAGCTTTGTG-1 4 91251148 G A - 1 1 G>A C>T +AACGTCACACTCCTTG-1_11_106066844_C_G_+ AACGTCACACTCCTTG-1 11 106066844 C G + 1 1 C>G C>G +AAACGAAAGGTAGTCG-1_2_164018479_A_G_+ AAACGAAAGGTAGTCG-1 2 164018479 A G + 1 1 A>G A>G +AACCTGAAGTCCCAGC-1_10_57515908_G_A_- AACCTGAAGTCCCAGC-1 10 57515908 G A - 1 1 G>A C>T +AAGACTCGTTGCTCGG-1_9_70554626_A_G_+ AAGACTCGTTGCTCGG-1 9 70554626 A G + 1 1 A>G A>G +AAATGGAAGCAGATAT-1_7_87586531_A_C_+ AAATGGAAGCAGATAT-1 7 87586531 A C + 1 1 A>C A>C +AACAAAGCACAGTATC-1_4_124849502_C_T_- AACAAAGCACAGTATC-1 4 124849502 C T - 1 1 C>T G>A +AACACACGTTAAACAG-1_7_34202260_G_A_- AACACACGTTAAACAG-1 7 34202260 G A - 1 1 G>A C>T +AAAGTGAGTCATCACA-1_17_56606170_A_G_+ AAAGTGAGTCATCACA-1 17 56606170 A G + 1 1 A>G A>G +AACCTTTCAGACCTGC-1_17_23824969_G_A_- AACCTTTCAGACCTGC-1 17 23824969 G A - 1 1 G>A C>T +AAAGTCCTCCTACAAG-1_6_125161998_A_T_- AAAGTCCTCCTACAAG-1 6 125161998 A T - 1 1 A>T T>A +AACGTCAGTGGGTCAA-1_18_42925568_G_A_- AACGTCAGTGGGTCAA-1 18 42925568 G A - 1 1 G>A C>T +AACCTTTTCCTCATAT-1_16_57391454_T_C_- AACCTTTTCCTCATAT-1 16 57391454 T C - 1 1 T>C A>G +AAAGGGCCACACTTAG-1_9_40785049_G_T_+ AAAGGGCCACACTTAG-1 9 40785049 G T + 1 1 G>T G>T +AACAAAGAGGTGCGAT-1_6_5164763_C_T_+ AACAAAGAGGTGCGAT-1 6 5164763 C T + 1 1 C>T C>T +AACAAAGGTTTGACAC-1_16_57391569_C_G_- AACAAAGGTTTGACAC-1 16 57391569 C G - 1 2 C>G G>C +AAACGCTTCTGCTTAT-1_8_82127447_A_G_+ AAACGCTTCTGCTTAT-1 8 82127447 A G + 1 1 A>G A>G +AAATGGATCAGCGTCG-1_11_95006397_A_T_+ AAATGGATCAGCGTCG-1 11 95006397 A T + 1 1 A>T A>T +AAACGCTTCGGTTAGT-1_4_151061028_T_G_- AAACGCTTCGGTTAGT-1 4 151061028 T G - 1 1 T>G A>C +AACCACAAGACTTGTC-1_17_24721214_T_A_+ AACCACAAGACTTGTC-1 17 24721214 T A + 1 1 T>A T>A +AACCTTTCAGACCTGC-1_12_117667280_G_A_+ AACCTTTCAGACCTGC-1 12 117667280 G A + 1 1 G>A G>A +AAATGGACAAGCGCAA-1_17_87433642_T_C_- AAATGGACAAGCGCAA-1 17 87433642 T C - 1 1 T>C A>G +AAGAACACACTAGGTT-1_3_90213253_G_A_- AAGAACACACTAGGTT-1 3 90213253 G A - 1 1 G>A C>T +AAAGGTAGTATGTGTC-1_2_5379332_A_T_- AAAGGTAGTATGTGTC-1 2 5379332 A T - 1 1 A>T T>A +AACGTCAAGGTAAGTT-1_2_5379332_A_T_- AACGTCAAGGTAAGTT-1 2 5379332 A T - 1 1 A>T T>A +AACCCAAGTCATAACC-1_9_27097546_T_C_- AACCCAAGTCATAACC-1 9 27097546 T C - 1 1 T>C A>G +AACCTTTTCTTTCGAT-1_9_3000364_G_A_- AACCTTTTCTTTCGAT-1 9 3000364 G A - 1 1 G>A C>T +AACGGGAGTCAGGCAA-1_9_75565792_G_C_- AACGGGAGTCAGGCAA-1 9 75565792 G C - 1 1 G>C C>G +AACCATGGTGAGTTTC-1_4_3834676_C_T_- AACCATGGTGAGTTTC-1 4 3834676 C T - 1 1 C>T G>A +AACCTTTAGACCATAA-1_5_147725249_C_T_- AACCTTTAGACCATAA-1 5 147725249 C T - 1 1 C>T G>A +AACGTCATCCATCTAT-1_9_3000555_C_T_- AACGTCATCCATCTAT-1 9 3000555 C T - 1 1 C>T G>A +AACCAACGTAGGTAGC-1_15_63968432_A_C_- AACCAACGTAGGTAGC-1 15 63968432 A C - 1 1 A>C T>G +AAGAACATCTCCGAAA-1_3_103057536_A_G_+ AAGAACATCTCCGAAA-1 3 103057536 A G + 1 1 A>G A>G +AACAGGGTCGGTCGGT-1_15_5117322_C_T_+ AACAGGGTCGGTCGGT-1 15 5117322 C T + 1 1 C>T C>T +AACCTGACATCGTCCT-1_15_27478474_T_C_+ AACCTGACATCGTCCT-1 15 27478474 T C + 1 1 T>C T>C +AACAACCAGACGACTG-1_17_39847403_T_G_- AACAACCAGACGACTG-1 17 39847403 T G - 1 2 T>G A>C +AACAAAGGTGTAGTGG-1_19_29388091_T_C_+ AACAAAGGTGTAGTGG-1 19 29388091 T C + 1 1 T>C T>C +AACGAAAAGGTGATAT-1_17_39847337_G_A_+ AACGAAAAGGTGATAT-1 17 39847337 G A + 1 1 G>A G>A +AAAGGGCAGGACATCG-1_10_94563918_C_G_+ AAAGGGCAGGACATCG-1 10 94563918 C G + 1 1 C>G C>G +AACCTTTAGACCATAA-1_15_5117326_A_G_+ AACCTTTAGACCATAA-1 15 5117326 A G + 1 1 A>G A>G +AAAGGTAGTACACGCC-1_7_25380005_G_A_- AAAGGTAGTACACGCC-1 7 25380005 G A - 1 1 G>A C>T +AAGATAGCAATAACGA-1_16_29608875_T_G_+ AAGATAGCAATAACGA-1 16 29608875 T G + 1 1 T>G T>G +AACACACTCTGCGGGT-1_8_72343286_C_T_- AACACACTCTGCGGGT-1 8 72343286 C T - 1 1 C>T G>A +AACGGGAGTTGTGCCG-1_5_34194895_C_T_- AACGGGAGTTGTGCCG-1 5 34194895 C T - 1 1 C>T G>A +AAACGCTCAGTAGGAC-1_4_116069887_G_A_- AAACGCTCAGTAGGAC-1 4 116069887 G A - 1 1 G>A C>T +AACGTCAAGCTAAACA-1_6_37919974_C_A_+ AACGTCAAGCTAAACA-1 6 37919974 C A + 1 1 C>A C>A +AACCTGACAAACCACT-1_9_107945371_A_C_+ AACCTGACAAACCACT-1 9 107945371 A C + 1 1 A>C A>C +AAAGGGCCAACACAGG-1_9_108204951_A_G_- AAAGGGCCAACACAGG-1 9 108204951 A G - 1 1 A>G T>C +AAACGAACAGAACTTC-1_1_143755801_T_C_- AAACGAACAGAACTTC-1 1 143755801 T C - 1 1 T>C A>G +AACCACATCCTAGCTC-1_5_146261080_C_A_+ AACCACATCCTAGCTC-1 5 146261080 C A + 1 1 C>A C>A +AAAGGATGTGCTCGTG-1_11_69652963_C_A_+ AAAGGATGTGCTCGTG-1 11 69652963 C A + 1 1 C>A C>A +AAACGCTCATCAACCA-1_10_79711747_T_A_+ AAACGCTCATCAACCA-1 10 79711747 T A + 1 1 T>A T>A +AACGGGAAGTTGCCCG-1_11_87034175_A_G_- AACGGGAAGTTGCCCG-1 11 87034175 A G - 1 1 A>G T>C +AACAAGACAACAAGTA-1_1_85908419_G_A_+ AACAAGACAACAAGTA-1 1 85908419 G A + 1 1 G>A G>A +AAGACTCAGCCTGACC-1_9_123461940_T_G_+ AAGACTCAGCCTGACC-1 9 123461940 T G + 1 1 T>G T>G +AACGGGAGTTGTGCCG-1_11_62389768_A_G_- AACGGGAGTTGTGCCG-1 11 62389768 A G - 1 1 A>G T>C +AACAACCGTTGCAACT-1_10_3946256_T_C_+ AACAACCGTTGCAACT-1 10 3946256 T C + 1 1 T>C T>C +AACAAAGTCACGATAC-1_3_89249641_C_T_+ AACAAAGTCACGATAC-1 3 89249641 C T + 1 1 C>T C>T +AACTTCTGTAACGTTC-1_17_39847403_T_G_- AACTTCTGTAACGTTC-1 17 39847403 T G - 1 1 T>G A>C +AACAAGACACTACTTT-1_13_98839204_T_C_- AACAAGACACTACTTT-1 13 98839204 T C - 1 1 T>C A>G +AACGAAAGTCCTCATC-1_9_123462100_A_T_+ AACGAAAGTCCTCATC-1 9 123462100 A T + 1 1 A>T A>T +AAACCCAAGGTTTGAA-1_17_39847096_G_C_+ AAACCCAAGGTTTGAA-1 17 39847096 G C + 1 1 G>C G>C +AAAGGTAGTATGTGTC-1_X_136838221_T_A_+ AAAGGTAGTATGTGTC-1 X 136838221 T A + 1 4 T>A T>A +AAGAACAAGAAGGGAT-1_11_74641319_C_T_+ AAGAACAAGAAGGGAT-1 11 74641319 C T + 1 1 C>T C>T +AACCTGAAGTCCCAGC-1_10_117814675_G_A_- AACCTGAAGTCCCAGC-1 10 117814675 G A - 1 1 G>A C>T +AAACCCACATATCTGG-1_2_28214268_G_A_+ AAACCCACATATCTGG-1 2 28214268 G A + 1 2 G>A G>A +AACCTTTAGGGTATAT-1_4_87133933_A_T_- AACCTTTAGGGTATAT-1 4 87133933 A T - 1 1 A>T T>A +AACTTCTAGTGATGGC-1_1_93092084_A_C_- AACTTCTAGTGATGGC-1 1 93092084 A C - 1 1 A>C T>G +AACGGGATCAGTCATG-1_16_84954665_A_G_- AACGGGATCAGTCATG-1 16 84954665 A G - 1 1 A>G T>C +AAGATAGGTCATCAGT-1_18_43585812_G_A_- AAGATAGGTCATCAGT-1 18 43585812 G A - 1 1 G>A C>T +AACGGGAGTGTCATTG-1_9_84124189_C_T_+ AACGGGAGTGTCATTG-1 9 84124189 C T + 1 1 C>T C>T +AAACGAATCGTAGGAG-1_16_57391479_T_A_- AAACGAATCGTAGGAG-1 16 57391479 T A - 1 1 T>A A>T +AAGATAGCACGCGTGT-1_7_126795446_A_G_- AAGATAGCACGCGTGT-1 7 126795446 A G - 1 1 A>G T>C +AAGAACAGTAACAGGC-1_16_45154931_G_T_- AAGAACAGTAACAGGC-1 16 45154931 G T - 1 1 G>T C>A +AACAACCGTATGTCTG-1_15_36770963_G_C_- AACAACCGTATGTCTG-1 15 36770963 G C - 1 1 G>C C>G +AAATGGATCCCTTGTG-1_12_67129898_T_C_- AAATGGATCCCTTGTG-1 12 67129898 T C - 1 1 T>C A>G +AAGAACAAGGGTTTCT-1_18_6789943_C_T_+ AAGAACAAGGGTTTCT-1 18 6789943 C T + 1 1 C>T C>T +AAAGGGCCATGTCTAG-1_5_14589928_G_A_+ AAAGGGCCATGTCTAG-1 5 14589928 G A + 1 1 G>A G>A +AAAGGTAAGTGGTTAA-1_17_39847403_T_G_+ AAAGGTAAGTGGTTAA-1 17 39847403 T G + 1 1 T>G T>G +AACCCAAGTATCGATC-1_10_63100426_A_C_+ AACCCAAGTATCGATC-1 10 63100426 A C + 1 1 A>C A>C +AAGATAGCACGCGTGT-1_10_108583155_T_G_- AAGATAGCACGCGTGT-1 10 108583155 T G - 1 1 T>G A>C +AAACCCACATCTGGGC-1_15_95624545_A_G_- AAACCCACATCTGGGC-1 15 95624545 A G - 1 1 A>G T>C +AACTTCTAGCCTAACT-1_6_119355407_A_G_- AACTTCTAGCCTAACT-1 6 119355407 A G - 1 1 A>G T>C +AAAGGGCTCGGAGCAA-1_17_39847403_T_G_- AAAGGGCTCGGAGCAA-1 17 39847403 T G - 1 1 T>G A>C +AAAGGGCAGTAAGCAT-1_17_39847403_T_G_+ AAAGGGCAGTAAGCAT-1 17 39847403 T G + 1 1 T>G T>G +AACACACGTTTGTTCT-1_12_40617830_C_T_+ AACACACGTTTGTTCT-1 12 40617830 C T + 1 1 C>T C>T +AACCAACTCGATGGAG-1_9_106898257_A_T_- AACCAACTCGATGGAG-1 9 106898257 A T - 1 1 A>T T>A +AAAGTCCAGTCGGCCT-1_5_142903297_G_A_- AAAGTCCAGTCGGCCT-1 5 142903297 G A - 1 2 G>A C>T +AACCCAATCCTCTAGC-1_16_13702460_C_T_+ AACCCAATCCTCTAGC-1 16 13702460 C T + 1 1 C>T C>T +AACCATGGTAGGTTTC-1_9_3035185_G_A_- AACCATGGTAGGTTTC-1 9 3035185 G A - 1 1 G>A C>T +AACAACCGTCTCAGAT-1_17_39848018_C_T_+ AACAACCGTCTCAGAT-1 17 39848018 C T + 1 1 C>T C>T +AACAAAGCAATCAGCT-1_4_104488554_A_T_+ AACAAAGCAATCAGCT-1 4 104488554 A T + 1 1 A>T A>T +AAAGTCCAGTCGGCCT-1_14_102977319_C_T_- AAAGTCCAGTCGGCCT-1 14 102977319 C T - 1 1 C>T G>A +AAGACAAAGAGTTCGG-1_16_43619140_A_C_+ AAGACAAAGAGTTCGG-1 16 43619140 A C + 1 1 A>C A>C +AAAGTCCAGTCGGCCT-1_6_60731819_G_A_- AAAGTCCAGTCGGCCT-1 6 60731819 G A - 1 1 G>A C>T +AAACGCTAGGTTACAA-1_16_52251211_G_A_- AAACGCTAGGTTACAA-1 16 52251211 G A - 1 1 G>A C>T +AAAGGTAGTCGAATTC-1_7_97873015_G_T_+ AAAGGTAGTCGAATTC-1 7 97873015 G T + 1 1 G>T G>T +AAACCCAAGATTGCGG-1_2_5882005_C_A_- AAACCCAAGATTGCGG-1 2 5882005 C A - 1 1 C>A G>T +AACAAGAGTAGTCTTG-1_MT_8451_A_G_+ AACAAGAGTAGTCTTG-1 MT 8451 A G + 1 1 A>G A>G +AAAGTCCTCCGATGCG-1_10_9828365_T_C_- AAAGTCCTCCGATGCG-1 10 9828365 T C - 1 1 T>C A>G +AACAACCCACACACGC-1_7_29266909_G_A_- AACAACCCACACACGC-1 7 29266909 G A - 1 1 G>A C>T +AAATGGAAGCAGATAT-1_10_29312894_T_A_- AAATGGAAGCAGATAT-1 10 29312894 T A - 1 1 T>A A>T +AAGAACAAGGGTTTCT-1_1_175745654_T_A_+ AAGAACAAGGGTTTCT-1 1 175745654 T A + 1 1 T>A T>A +AACAAGAAGTGATGGC-1_14_98165462_C_G_- AACAAGAAGTGATGGC-1 14 98165462 C G - 1 1 C>G G>C +AAATGGAAGCCGGATA-1_16_57391454_T_C_- AAATGGAAGCCGGATA-1 16 57391454 T C - 1 1 T>C A>G +AAGATAGGTACGCGTC-1_7_28778449_C_A_+ AAGATAGGTACGCGTC-1 7 28778449 C A + 1 1 C>A C>A +AACCTGAAGTCCCAGC-1_2_144142635_G_A_- AACCTGAAGTCCCAGC-1 2 144142635 G A - 1 1 G>A C>T +AAGAACAGTTGCTCCT-1_4_116990347_T_G_- AAGAACAGTTGCTCCT-1 4 116990347 T G - 1 1 T>G A>C +AACAAAGCACGGCACT-1_10_7691446_G_A_+ AACAAAGCACGGCACT-1 10 7691446 G A + 1 1 G>A G>A +AACTTCTAGCAGATAT-1_8_26028273_G_A_- AACTTCTAGCAGATAT-1 8 26028273 G A - 1 1 G>A C>T +AACAAAGTCCCGTGTT-1_9_3037743_G_T_- AACAAAGTCCCGTGTT-1 9 3037743 G T - 1 1 G>T C>A +AAGACTCGTGGTACAG-1_7_62349718_A_G_+ AAGACTCGTGGTACAG-1 7 62349718 A G + 1 1 A>G A>G +AACGGGAAGTTGCCCG-1_16_84954513_G_A_- AACGGGAAGTTGCCCG-1 16 84954513 G A - 1 1 G>A C>T +AACAGGGCACCACTGG-1_9_3014259_C_G_- AACAGGGCACCACTGG-1 9 3014259 C G - 1 1 C>G G>C +AAAGGGCCAACCAATC-1_16_57391685_G_A_- AAAGGGCCAACCAATC-1 16 57391685 G A - 1 1 G>A C>T +AACCCAATCCTTCACG-1_8_69113654_G_A_+ AACCCAATCCTTCACG-1 8 69113654 G A + 1 1 G>A G>A +AACACACGTTTGTTCT-1_2_128802445_C_T_+ AACACACGTTTGTTCT-1 2 128802445 C T + 1 1 C>T C>T +AAAGTCCTCTGCGATA-1_2_155278007_C_T_+ AAAGTCCTCTGCGATA-1 2 155278007 C T + 1 1 C>T C>T +AACACACAGTGCACAG-1_17_39848018_C_T_+ AACACACAGTGCACAG-1 17 39848018 C T + 3 3 C>T C>T diff --git a/marine.py b/marine.py index 498223c..f725b59 100755 --- a/marine.py +++ b/marine.py @@ -17,7 +17,6 @@ import tracemalloc from matplotlib import pyplot as plt - sys.path.append(os.path.join(os.path.dirname(os.path.realpath(__file__)), 'src/')) from read_process import incorporate_replaced_pos_info,incorporate_insertions_and_deletions,\ @@ -89,7 +88,6 @@ def edit_finder(bam_filepath, output_folder, strandedness, barcode_tag="CB", bar return overall_label_to_list_of_contents, results, total_seconds_for_reads_df - def bam_processing(overall_label_to_list_of_contents, output_folder, barcode_tag='CB', cores=1, number_of_expected_bams=4, verbose=False): split_bams_folder = '{}/split_bams'.format(output_folder) @@ -117,6 +115,7 @@ def bam_processing(overall_label_to_list_of_contents, output_folder, barcode_tag import subprocess + def coverage_processing(output_folder, barcode_tag='CB', paired_end=False, verbose=False, cores=1, number_of_expected_bams=4, min_read_quality=0, bam_filepath=''): diff --git a/src/core.py b/src/core.py index c27fb3d..2f77684 100644 --- a/src/core.py +++ b/src/core.py @@ -11,6 +11,7 @@ import multiprocessing from tqdm import tqdm from multiprocessing import get_context +from memory_profiler import profile from read_process import incorporate_replaced_pos_info,incorporate_insertions_and_deletions,\ get_positions_from_md_tag,reverse_complement,get_edit_information,get_edit_information_wrapper,\ @@ -23,7 +24,6 @@ import os, psutil - def run_edit_identifier(bampath, output_folder, strandedness, barcode_tag="CB", barcode_whitelist=None, contigs=[], num_intervals_per_contig=16, verbose=False, cores=64, min_read_quality = 0): # Make subfolder in which to information about edits edit_info_subfolder = '{}/edit_info'.format(output_folder) @@ -229,6 +229,7 @@ def find_edits_and_split_bams(bampath, contig, split_index, start, end, output_f import random + def find_edits_and_split_bams_wrapper(parameters): try: start_time = time.perf_counter() diff --git a/src/utils.py b/src/utils.py index d88fa38..f7c5492 100644 --- a/src/utils.py +++ b/src/utils.py @@ -7,7 +7,7 @@ import numpy as np import sys from collections import OrderedDict, defaultdict - +from memory_profiler import profile suffixes = { 'CB': [ @@ -312,6 +312,7 @@ def get_bulk_coverage_at_pos(samfile_for_barcode, contig_bam, just_contig, pos, return coverage_at_pos + def get_coverage_df(edit_info, contig, output_folder, barcode_tag='CB', paired_end=False, verbose=False): @@ -390,7 +391,6 @@ def get_coverage_df(edit_info, contig, output_folder, barcode_tag='CB', paired_e return coverage_df - def get_coverage_wrapper(parameters): edit_info, contig, output_folder, barcode_tag, paired_end, verbose = parameters @@ -486,8 +486,7 @@ def write_reads_to_file(reads, bam_file_name, header_string, barcode_tag="BC"): bam_handle.close() - - + def concat_and_write_bams(contig, df_dict, header_string, split_bams_folder, barcode_tag='CB', number_of_expected_bams=4, verbose=False): job_params = [] From d19da17dd53d0e44a77c1bc40937266a3af00c12 Mon Sep 17 00:00:00 2001 From: Eric Kofman Date: Wed, 24 Jul 2024 13:11:21 -0700 Subject: [PATCH 02/10] change the way we return read counts --- examples/test_sc_subset_CT.sh | 2 +- marine.py | 5 ++--- src/core.py | 15 ++++++++++----- 3 files changed, 13 insertions(+), 9 deletions(-) diff --git a/examples/test_sc_subset_CT.sh b/examples/test_sc_subset_CT.sh index e49d691..80c54be 100644 --- a/examples/test_sc_subset_CT.sh +++ b/examples/test_sc_subset_CT.sh @@ -1,3 +1,3 @@ #! /bin/bash -marine.py --bam_filepath $MARINE/examples/data/single_cell_CT.md.subset.bam --output_folder $MARINE/examples/sc_subset_CT --barcode_whitelist_file $MARINE/examples/data/sc_barcodes.tsv.gz --barcode_tag "CB" --num_intervals_per_contig 16 --strandedness 2 --contigs "1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y" +$MARINE/marine.py --bam_filepath $MARINE/examples/data/single_cell_CT.md.subset.bam --output_folder $MARINE/examples/sc_subset_CT --barcode_whitelist_file $MARINE/examples/data/sc_barcodes.tsv.gz --barcode_tag "CB" --num_intervals_per_contig 16 --strandedness 2 --contigs "1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y" diff --git a/marine.py b/marine.py index a7a82a5..6d6b041 100755 --- a/marine.py +++ b/marine.py @@ -323,7 +323,6 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in pretty_print("Splitting and reconfiguring BAMs to optimize coverage calculations", style="~") # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - total_bam_generation_time, total_seconds_for_bams_df = bam_processing(overall_label_to_list_of_contents, output_folder, barcode_tag=barcode_tag, cores=cores, number_of_expected_bams=number_of_expected_bams, verbose=verbose) total_seconds_for_bams_df.to_csv("{}/bam_reconfiguration_timing.tsv".format(logging_folder), sep='\t') pretty_print("Total time to concat and write bams: {} minutes".format(round(total_bam_generation_time/60, 3))) @@ -333,7 +332,7 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in # Coverage calculation # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pretty_print("Calculating coverage at edited sites, minimum read quality is {}...".format(min_read_quality), style='~') - + coverage_subfolder = '{}/coverage'.format(output_folder) make_folder(coverage_subfolder) @@ -348,7 +347,7 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in ) total_seconds_for_contig_df.to_csv("{}/coverage_calculation_timing.tsv".format(logging_folder), sep='\t') - + pretty_print("Total time to calculate coverage: {} minutes".format(round(total_time/60, 3))) diff --git a/src/core.py b/src/core.py index ee2e42f..f373b71 100644 --- a/src/core.py +++ b/src/core.py @@ -42,8 +42,9 @@ def run_edit_identifier(bampath, output_folder, strandedness, barcode_tag="CB", start_time = time.perf_counter() + all_counts_summary_dfs = [] overall_count_summary_dict = defaultdict(lambda:0) - counts_summary_dicts = [] + multiprocessing.set_start_method('spawn') with get_context("spawn").Pool(processes=cores, maxtasksperchild=4) as p: max_ = len(edit_finding_jobs) @@ -56,9 +57,9 @@ def run_edit_identifier(bampath, output_folder, strandedness, barcode_tag="CB", overall_label_to_list_of_contents[_[0]][_[1]] = _[2] total_reads = _[3] - counts_summary_dict = _[4] - for k, v in counts_summary_dict.items(): - overall_count_summary_dict[k] += v + counts_summary_df = _[4] + all_counts_summary_dfs.append(counts_summary_df) + total_time = time.perf_counter() - start_time @@ -68,7 +69,11 @@ def run_edit_identifier(bampath, output_folder, strandedness, barcode_tag="CB", overall_time = time.perf_counter() - start_time - overall_count_summary_df = pd.DataFrame.from_dict(overall_count_summary_dict).sum(axis=1) + all_counts_summary_dfs_combined = pd.concat(all_counts_summary_dfs, axis=1) + #print(all_counts_summary_dfs_combined.index, all_counts_summary_dfs_combined.columns) + + overall_count_summary_df = pd.DataFrame.from_dict(all_counts_summary_dfs_combined).sum(axis=1) + #print(overall_count_summary_df) return overall_label_to_list_of_contents, results, overall_time, overall_total_reads, total_seconds_for_reads, overall_count_summary_df From 63c2ce4360f291013e8881988283e3ad46d49525 Mon Sep 17 00:00:00 2001 From: Eric Kofman Date: Wed, 24 Jul 2024 15:56:47 -0700 Subject: [PATCH 03/10] process edit filtering within worker on shard --- marine.py | 99 ++++++++++++++++------------------------------------ src/core.py | 11 +++--- src/utils.py | 99 ++++++++++++++++++++++++++++++++++++++++------------ 3 files changed, 115 insertions(+), 94 deletions(-) diff --git a/marine.py b/marine.py index 6d6b041..85ada2b 100755 --- a/marine.py +++ b/marine.py @@ -117,7 +117,7 @@ def bam_processing(overall_label_to_list_of_contents, output_folder, barcode_tag import subprocess def coverage_processing(output_folder, barcode_tag='CB', paired_end=False, verbose=False, cores=1, number_of_expected_bams=4, - min_read_quality=0, bam_filepath=''): + min_read_quality=0, bam_filepath='', filters=None): # Single-cell or long read version: edit_info_grouped_per_contig_combined = gather_edit_information_across_subcontigs(output_folder, @@ -133,10 +133,11 @@ def coverage_processing(output_folder, barcode_tag='CB', paired_end=False, verbo barcode_tag=barcode_tag, paired_end=paired_end, verbose=verbose, - processes=cores + processes=cores, + filters=filters ) - - concat_command = 'for f in {}/coverage/*.tsv; do cat $f; done > {}/all_edit_info.tsv'.format(output_folder, output_folder) + + concat_command = 'for f in {}/coverage/*_filtered.tsv; do cat $f; done > {}/final_edit_info.tsv'.format(output_folder, output_folder) command_bash = '{}/concat_command.sh'.format(output_folder) with open(command_bash, 'w') as f: @@ -146,6 +147,7 @@ def coverage_processing(output_folder, barcode_tag='CB', paired_end=False, verbo subprocess.run(['bash', command_bash]) print("Done concatenating.") + total_seconds_for_contig_df = pd.DataFrame.from_dict(total_seconds_for_contig, orient='index') total_seconds_for_contig_df.columns = ['seconds'] total_seconds_for_contig_df['contig sections'] = total_seconds_for_contig_df.index @@ -335,6 +337,12 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in coverage_subfolder = '{}/coverage'.format(output_folder) make_folder(coverage_subfolder) + + filters = { + 'dist_from_end': min_dist_from_end, + 'base_quality': min_base_quality, + 'max_edits_per_read': max_edits_per_read + } results, total_time, total_seconds_for_contig_df = coverage_processing(output_folder, barcode_tag=barcode_tag, @@ -343,54 +351,21 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in cores=cores, number_of_expected_bams=number_of_expected_bams, min_read_quality=min_read_quality, - bam_filepath=bam_filepath + bam_filepath=bam_filepath, + filters=filters ) total_seconds_for_contig_df.to_csv("{}/coverage_calculation_timing.tsv".format(logging_folder), sep='\t') + all_filter_stats = pd.DataFrame([r[1] for r in results]).sum(axis=0) + print(all_filter_stats) + with open('{}/manifest.txt'.format(logging_folder), 'a+') as f: + f.write(f'original_edits\t{float(all_filter_stats.loc["original"])}\n') + f.write(f'filtered_edits\t{float(all_filter_stats.loc["filtered"])}\n') + pretty_print("Total time to calculate coverage: {} minutes".format(round(total_time/60, 3))) - - # Filtering and site-level information - # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - pretty_print("Filtering and calculating site-level statistics", style="~") - # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - - print("Loading edit information...") - all_edit_info_pd = pd.read_csv('{}/all_edit_info.tsv'.format(output_folder), - sep='\t', - names=['barcode', 'contig', 'position', 'ref', 'alt', 'read_id', 'strand', - 'dist_from_end', 'base_quality', 'mapping_quality', 'barcode_position', - 'coverage', 'source', 'position_barcode'], dtype={'base_quality': int, 'dist_from_end': int, 'contig': str}) - - coverage_per_unique_position_df = pd.DataFrame(all_edit_info_pd.groupby( - [ - "position_barcode" - ]).coverage.max()) - - distinguishing_columns = [ - "barcode", - "contig", - "position", - "ref", - "alt", - "read_id", - "strand", - "dist_from_end", - "base_quality", - "mapping_quality" - ] - all_edit_info_unique_position_df = all_edit_info_pd.drop_duplicates(distinguishing_columns)[distinguishing_columns] - - all_edit_info_unique_position_df.index = all_edit_info_unique_position_df['position'].astype(str)\ -+ '_' + all_edit_info_unique_position_df['barcode'] - - all_edit_info_unique_position_with_coverage_df = all_edit_info_unique_position_df.join(coverage_per_unique_position_df) - - - all_edit_info_unique_position_with_coverage_df.to_csv('{}/final_edit_info.tsv'.format(output_folder), sep='\t') - if skip_coverage: # If we skip coverage steps, we have to just collate edit info results from the edit finding steps into one giant # final_edit_info.tsv file (where coverage is None) @@ -410,18 +385,13 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in # Filtering steps if not final_path_already_exists: print("Filtering..") - if filtering_only: - all_edit_info_unique_position_with_coverage_df = pd.read_csv('{}/final_edit_info.tsv'.format(output_folder), sep='\t', dtype={"contig": str}) - - pretty_print("Filtering edited sites", style='~') - pretty_print("Minimum distance from end = {}, Minimum base-calling quality = {}".format(min_dist_from_end, min_base_quality)) - - #all_edit_info_unique_position_with_coverage_df['min_base_quality'] = all_edit_info_unique_position_with_coverage_df['min_base_quality'].astype(int) - - all_edit_info_filtered = all_edit_info_unique_position_with_coverage_df[ - (all_edit_info_unique_position_with_coverage_df["base_quality"] >= min_base_quality) & - (all_edit_info_unique_position_with_coverage_df["dist_from_end"] >= min_dist_from_end)] - + all_edit_info_unique_position_with_coverage_df = pd.read_csv('{}/final_edit_info.tsv'.format(output_folder), sep='\t', + index_col=0, + names=[ + 'barcode', 'contig', 'position', 'ref', 'alt', 'read_id', + 'strand','dist_from_end', 'base_quality', 'mapping_quality', + 'coverage'], + dtype={'base_quality': int, 'dist_from_end': int, 'contig': str}) print("Deduplicating....") distinguishing_columns = [ @@ -437,22 +407,14 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in if not skip_coverage: distinguishing_columns.append("coverage") - all_edit_info_filtered_deduped = all_edit_info_filtered.drop_duplicates( + all_edit_info_filtered_deduped = all_edit_info_unique_position_with_coverage_df.drop_duplicates( distinguishing_columns)[distinguishing_columns] - pretty_print("\tNumber of edits before filtering:\n\t{}".format(len(all_edit_info_unique_position_with_coverage_df))) - pretty_print("\tNumber of edits after filtering:\n\t{}".format(len(all_edit_info_filtered))) - pretty_print("\tNumber of edits after deduplicating:\n\t{}".format(len(all_edit_info_filtered_deduped))) - - if max_edits_per_read: - pretty_print("\t\tFiltering out reads with more than {} edits...".format(max_edits_per_read)) - read_edits = all_edit_info_filtered_deduped.groupby('read_id').count().sort_values('barcode') - all_edit_info_filtered_deduped = all_edit_info_filtered_deduped[all_edit_info_filtered_deduped.read_id.isin(read_edits[read_edits['barcode'] <= max_edits_per_read].index)] - + pretty_print("\tNumber of edits after filtering:\n\t{}".format(len(all_edit_info_unique_position_with_coverage_df))) + pretty_print("\tNumber of edits after deduplicating:\n\t{}".format(len(all_edit_info_filtered_deduped))) all_edit_info_filtered_deduped.to_csv('{}/final_filtered_edit_info.tsv'.format(output_folder), sep='\t', index=False) - all_edit_info_unique_position_with_coverage_deduped_df = pd.read_csv('{}/final_filtered_edit_info.tsv'.format(output_folder), sep='\t', dtype={"contig": str}) @@ -543,6 +505,7 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in current, peak = tracemalloc.get_traced_memory() with open('{}/manifest.txt'.format(logging_folder), 'a+') as f: + f.write(f'sites\t{len(final_site_level_information_df)}\n') f.write(f'peak_memory_mb\t{peak/1e6}\n') f.write(f'time_elapsed_seconds\t{time.time()-start_time:.2f}s\n') diff --git a/src/core.py b/src/core.py index f373b71..f1fd6c0 100644 --- a/src/core.py +++ b/src/core.py @@ -298,17 +298,20 @@ def find_edits_and_split_bams_wrapper(parameters): -def run_coverage_calculator(edit_info_grouped_per_contig_combined, output_folder, +def run_coverage_calculator(edit_info_grouped_per_contig_combined, + output_folder, barcode_tag='CB', paired_end=False, verbose=False, - processes=16 + processes=16, + filters=None, ): coverage_counting_job_params = get_job_params_for_coverage_for_edits_in_contig( edit_info_grouped_per_contig_combined, output_folder, barcode_tag=barcode_tag, paired_end=paired_end, + filters=filters, verbose=verbose ) @@ -337,12 +340,12 @@ def run_coverage_calculator(edit_info_grouped_per_contig_combined, output_folder def get_job_params_for_coverage_for_edits_in_contig(edit_info_grouped_per_contig_combined, output_folder, - barcode_tag='CB', paired_end=False, verbose=False): + barcode_tag='CB', paired_end=False, filters=None, verbose=False): job_params = [] for contig, edit_info in edit_info_grouped_per_contig_combined.items(): - job_params.append([edit_info, contig, output_folder, barcode_tag, paired_end, verbose]) + job_params.append([edit_info, contig, output_folder, barcode_tag, paired_end, filters, verbose]) return job_params diff --git a/src/utils.py b/src/utils.py index f7c5492..eb6aad5 100644 --- a/src/utils.py +++ b/src/utils.py @@ -391,35 +391,90 @@ def get_coverage_df(edit_info, contig, output_folder, barcode_tag='CB', paired_e return coverage_df + +def filter_output_df(output_df, filters, output_filename): + filter_stats = {} + filter_stats['original'] = len(output_df) + + filtered_output_df = output_df[ + (output_df.dist_from_end >= filters.get('dist_from_end')) & + (output_df.base_quality >= filters.get('base_quality'))] + + coverage_per_unique_position_df = pd.DataFrame(filtered_output_df.groupby( + [ + "position_barcode" + ]).coverage.max()) + + distinguishing_columns = [ + "barcode", + "contig", + "position", + "ref", + "alt", + "read_id", + "strand", + "dist_from_end", + "base_quality", + "mapping_quality" + ] + + all_edit_info_unique_position_df = filtered_output_df.drop_duplicates(distinguishing_columns)[distinguishing_columns] + + all_edit_info_unique_position_df.index = all_edit_info_unique_position_df['position'].astype(str)\ ++ '_' + all_edit_info_unique_position_df['barcode'] + + all_edit_info_unique_position_with_coverage_df = all_edit_info_unique_position_df.join(coverage_per_unique_position_df) + + if filters.get('max_edits_per_read'): + #pretty_print("\t\tFiltering out reads with more than {} edits...".format(max_edits_per_read)) + read_edits = all_edit_info_unique_position_with_coverage_df.groupby('read_id').count().sort_values('barcode') + all_edit_info_unique_position_with_coverage_df = all_edit_info_unique_position_with_coverage_df[all_edit_info_unique_position_with_coverage_df.read_id.isin(read_edits[read_edits['barcode'] <= max_edits_per_read].index)] + + filter_stats['filtered'] = len(all_edit_info_unique_position_with_coverage_df) + + all_edit_info_unique_position_with_coverage_df.to_csv(output_filename, sep='\t', header=False) + + return filter_stats + + def get_coverage_wrapper(parameters): - edit_info, contig, output_folder, barcode_tag, paired_end, verbose = parameters + edit_info, contig, output_folder, barcode_tag, paired_end, filters, verbose = parameters output_filename = '{}/coverage/{}.tsv'.format(output_folder, contig, header=False) + filtered_output_filename = '{}/coverage/{}_filtered.tsv'.format(output_folder, contig, header=False) + if os.path.exists(output_filename): - return output_filename + # filter + edit_info_and_coverage_joined = pd.read_csv(output_filename, sep='\t', names=[ + 'barcode', 'contig', 'position', 'ref', 'alt', 'read_id', 'strand', + 'dist_from_end', 'base_quality', 'mapping_quality', 'barcode_position', + 'coverage', 'source', 'position_barcode'], dtype={'base_quality': int, 'dist_from_end': int, 'contig': str}) + else: + edit_info = edit_info.with_columns( + pl.concat_str( + [ + pl.col("barcode"), + pl.col("position") + ], + separator=":", + ).alias("barcode_position")) + + edit_info_df = edit_info.to_pandas() + edit_info_df.index = edit_info_df['barcode_position'] - edit_info = edit_info.with_columns( - pl.concat_str( - [ - pl.col("barcode"), - pl.col("position") - ], - separator=":", - ).alias("barcode_position")) - - edit_info_df = edit_info.to_pandas() - edit_info_df.index = edit_info_df['barcode_position'] + coverage_df = get_coverage_df(edit_info, contig, output_folder, barcode_tag=barcode_tag, + paired_end=paired_end, verbose=verbose) - coverage_df = get_coverage_df(edit_info, contig, output_folder, barcode_tag=barcode_tag, - paired_end=paired_end, verbose=verbose) - - # Combine edit information with coverage information - edit_info_and_coverage_joined = edit_info_df.join(coverage_df, how='inner') - - edit_info_and_coverage_joined['position_barcode'] = edit_info_and_coverage_joined['position'].astype(str) + '_' + edit_info_and_coverage_joined['barcode'].astype(str) - edit_info_and_coverage_joined.to_csv(output_filename, sep='\t', header=False) + # Combine edit information with coverage information + edit_info_and_coverage_joined = edit_info_df.join(coverage_df, how='inner') + + edit_info_and_coverage_joined['position_barcode'] = edit_info_and_coverage_joined['position'].astype(str) + '_' + edit_info_and_coverage_joined['barcode'].astype(str) + edit_info_and_coverage_joined.to_csv(output_filename, sep='\t', header=False) - return output_filename + filter_stats = filter_output_df(edit_info_and_coverage_joined, filters, filtered_output_filename) + assert(os.path.exists(output_filename)) + assert(os.path.exists(filtered_output_filename)) + return filtered_output_filename, filter_stats From a7565e9baca8ef8f25f71ddeef321250e9f54a5a Mon Sep 17 00:00:00 2001 From: Eric Kofman Date: Wed, 24 Jul 2024 16:13:46 -0700 Subject: [PATCH 04/10] more work in shard --- marine.py | 26 ++------------------------ src/utils.py | 16 ++++++++++++++++ 2 files changed, 18 insertions(+), 24 deletions(-) diff --git a/marine.py b/marine.py index 85ada2b..4fd47b6 100755 --- a/marine.py +++ b/marine.py @@ -385,6 +385,7 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in # Filtering steps if not final_path_already_exists: print("Filtering..") + all_edit_info_unique_position_with_coverage_df = pd.read_csv('{}/final_edit_info.tsv'.format(output_folder), sep='\t', index_col=0, names=[ @@ -393,32 +394,9 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in 'coverage'], dtype={'base_quality': int, 'dist_from_end': int, 'contig': str}) - print("Deduplicating....") - distinguishing_columns = [ - "barcode", - "contig", - "position", - "ref", - "alt", - "read_id", - "strand", - "mapping_quality", - ] - if not skip_coverage: - distinguishing_columns.append("coverage") - - all_edit_info_filtered_deduped = all_edit_info_unique_position_with_coverage_df.drop_duplicates( - distinguishing_columns)[distinguishing_columns] - pretty_print("\tNumber of edits after filtering:\n\t{}".format(len(all_edit_info_unique_position_with_coverage_df))) - pretty_print("\tNumber of edits after deduplicating:\n\t{}".format(len(all_edit_info_filtered_deduped))) - all_edit_info_filtered_deduped.to_csv('{}/final_filtered_edit_info.tsv'.format(output_folder), - sep='\t', index=False) - - all_edit_info_unique_position_with_coverage_deduped_df = pd.read_csv('{}/final_filtered_edit_info.tsv'.format(output_folder), sep='\t', dtype={"contig": str}) - - all_edit_info_filtered_pl = pl.from_pandas(all_edit_info_unique_position_with_coverage_deduped_df) + all_edit_info_filtered_pl = pl.from_pandas(all_edit_info_unique_position_with_coverage_df) final_site_level_information_df = generate_site_level_information(all_edit_info_filtered_pl, skip_coverage=skip_coverage) pretty_print("\tNumber of unique edit sites:\n\t{}".format(len(final_site_level_information_df))) diff --git a/src/utils.py b/src/utils.py index eb6aad5..5959363 100644 --- a/src/utils.py +++ b/src/utils.py @@ -417,6 +417,7 @@ def filter_output_df(output_df, filters, output_filename): "base_quality", "mapping_quality" ] + all_edit_info_unique_position_df = filtered_output_df.drop_duplicates(distinguishing_columns)[distinguishing_columns] @@ -430,8 +431,23 @@ def filter_output_df(output_df, filters, output_filename): read_edits = all_edit_info_unique_position_with_coverage_df.groupby('read_id').count().sort_values('barcode') all_edit_info_unique_position_with_coverage_df = all_edit_info_unique_position_with_coverage_df[all_edit_info_unique_position_with_coverage_df.read_id.isin(read_edits[read_edits['barcode'] <= max_edits_per_read].index)] + distinguishing_columns = [ + "barcode", + "contig", + "position", + "ref", + "alt", + "read_id", + "strand", + "mapping_quality", + ] + + all_edit_info_unique_position_with_coverage_df = all_edit_info_unique_position_with_coverage_df.drop_duplicates( + distinguishing_columns)[distinguishing_columns] + filter_stats['filtered'] = len(all_edit_info_unique_position_with_coverage_df) + all_edit_info_unique_position_with_coverage_df.to_csv(output_filename, sep='\t', header=False) return filter_stats From a78cf2c58d9c57825f76c67c6bb0b7b774399c68 Mon Sep 17 00:00:00 2001 From: Eric Kofman Date: Wed, 24 Jul 2024 16:24:19 -0700 Subject: [PATCH 05/10] mem prof lines remove --- src/core.py | 1 - src/utils.py | 1 - 2 files changed, 2 deletions(-) diff --git a/src/core.py b/src/core.py index f1fd6c0..1ea5de6 100644 --- a/src/core.py +++ b/src/core.py @@ -11,7 +11,6 @@ import multiprocessing from tqdm import tqdm from multiprocessing import get_context -from memory_profiler import profile from read_process import incorporate_replaced_pos_info,incorporate_insertions_and_deletions,\ get_positions_from_md_tag,reverse_complement,get_edit_information,get_edit_information_wrapper,\ diff --git a/src/utils.py b/src/utils.py index 5959363..60f5b76 100644 --- a/src/utils.py +++ b/src/utils.py @@ -7,7 +7,6 @@ import numpy as np import sys from collections import OrderedDict, defaultdict -from memory_profiler import profile suffixes = { 'CB': [ From af680bdf19461441d524f1645d272bcfa925032b Mon Sep 17 00:00:00 2001 From: Eric Kofman Date: Wed, 24 Jul 2024 17:05:47 -0700 Subject: [PATCH 06/10] Fix column removal --- src/utils.py | 14 -------------- 1 file changed, 14 deletions(-) diff --git a/src/utils.py b/src/utils.py index 60f5b76..77ec7a4 100644 --- a/src/utils.py +++ b/src/utils.py @@ -430,20 +430,6 @@ def filter_output_df(output_df, filters, output_filename): read_edits = all_edit_info_unique_position_with_coverage_df.groupby('read_id').count().sort_values('barcode') all_edit_info_unique_position_with_coverage_df = all_edit_info_unique_position_with_coverage_df[all_edit_info_unique_position_with_coverage_df.read_id.isin(read_edits[read_edits['barcode'] <= max_edits_per_read].index)] - distinguishing_columns = [ - "barcode", - "contig", - "position", - "ref", - "alt", - "read_id", - "strand", - "mapping_quality", - ] - - all_edit_info_unique_position_with_coverage_df = all_edit_info_unique_position_with_coverage_df.drop_duplicates( - distinguishing_columns)[distinguishing_columns] - filter_stats['filtered'] = len(all_edit_info_unique_position_with_coverage_df) From 9c98d549efb48c34eb90671c778d58f8db65d870 Mon Sep 17 00:00:00 2001 From: Eric Kofman Date: Wed, 24 Jul 2024 17:40:53 -0700 Subject: [PATCH 07/10] fix tests --- marine.py | 2 +- src/utils.py | 26 +- tests/integration_tests.ipynb | 2167 ++--------------- .../scripts/only_5_cells_test.sh | 1 - tests/strandedness_tests/scripts/pair_test.sh | 2 +- .../final_filtered_site_info.tsv | 20 +- 6 files changed, 205 insertions(+), 2013 deletions(-) diff --git a/marine.py b/marine.py index 4fd47b6..1313353 100755 --- a/marine.py +++ b/marine.py @@ -390,7 +390,7 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in index_col=0, names=[ 'barcode', 'contig', 'position', 'ref', 'alt', 'read_id', - 'strand','dist_from_end', 'base_quality', 'mapping_quality', + 'strand', 'mapping_quality', 'coverage'], dtype={'base_quality': int, 'dist_from_end': int, 'contig': str}) diff --git a/src/utils.py b/src/utils.py index 77ec7a4..5e3220e 100644 --- a/src/utils.py +++ b/src/utils.py @@ -394,6 +394,11 @@ def get_coverage_df(edit_info, contig, output_folder, barcode_tag='CB', paired_e def filter_output_df(output_df, filters, output_filename): filter_stats = {} filter_stats['original'] = len(output_df) + if output_df.empty: + filter_stats['filtered'] = len(output_df) + output_df['coverage'] = [] + output_df.to_csv(output_filename, sep='\t', header=False) + return filter_stats filtered_output_df = output_df[ (output_df.dist_from_end >= filters.get('dist_from_end')) & @@ -430,6 +435,22 @@ def filter_output_df(output_df, filters, output_filename): read_edits = all_edit_info_unique_position_with_coverage_df.groupby('read_id').count().sort_values('barcode') all_edit_info_unique_position_with_coverage_df = all_edit_info_unique_position_with_coverage_df[all_edit_info_unique_position_with_coverage_df.read_id.isin(read_edits[read_edits['barcode'] <= max_edits_per_read].index)] + + distinguishing_columns = [ + "barcode", + "contig", + "position", + "ref", + "alt", + "read_id", + "strand", + "mapping_quality", + "coverage" + ] + + all_edit_info_unique_position_with_coverage_df = all_edit_info_unique_position_with_coverage_df.drop_duplicates( + distinguishing_columns)[distinguishing_columns] + filter_stats['filtered'] = len(all_edit_info_unique_position_with_coverage_df) @@ -466,12 +487,11 @@ def get_coverage_wrapper(parameters): coverage_df = get_coverage_df(edit_info, contig, output_folder, barcode_tag=barcode_tag, paired_end=paired_end, verbose=verbose) - # Combine edit information with coverage information + # Combine edit i)nformation with coverage information edit_info_and_coverage_joined = edit_info_df.join(coverage_df, how='inner') - edit_info_and_coverage_joined['position_barcode'] = edit_info_and_coverage_joined['position'].astype(str) + '_' + edit_info_and_coverage_joined['barcode'].astype(str) edit_info_and_coverage_joined.to_csv(output_filename, sep='\t', header=False) - + filter_stats = filter_output_df(edit_info_and_coverage_joined, filters, filtered_output_filename) assert(os.path.exists(output_filename)) assert(os.path.exists(filtered_output_filename)) diff --git a/tests/integration_tests.ipynb b/tests/integration_tests.ipynb index a5a64dc..64ad1dd 100644 --- a/tests/integration_tests.ipynb +++ b/tests/integration_tests.ipynb @@ -60,7 +60,7 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": 17, "id": "ba12c2b8-2ccb-4866-86c8-a2284fd1229f", "metadata": { "scrolled": true @@ -73,32 +73,32 @@ "/tscc/projects/ps-yeolab3/ekofman/sailor2/tests\n", "Running\n", "/tscc/projects/ps-yeolab3/ekofman/sailor2\n", - "unstranded_pair_test\n", + "pair_test\n", "Removing old files...\n", "Running tests...\n", "Assuming 1 cores available for multiprocessing. Set this to the number of available cores for optimal execution.\n", "Arguments:\n", - "\tBAM filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/bams/citrine435.bam\n", - "\tAnnotation bedfile filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed\n", - "\tOutput folder:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/unstranded_pair_test\n", + "\tBAM filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/bams/pair_example_18_49488551_49590000.sorted.bam\n", + "\tAnnotation bedfile filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/cellranger-GRCh38-3.0.0.annotation.genes.bed\n", + "\tOutput folder:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/pair_test\n", "\tBarcode whitelist:\tNone\n", - "\tStrandedness:\t0\n", + "\tStrandedness:\t2\n", "\tBarcode Tag:\tNone\n", "\tPaired End:\tTrue\n", "\tCoverage only:\tFalse\n", "\tFiltering only:\tFalse\n", "\tAnnotation only:\tFalse\n", "\tSailor outputs:\tTrue\n", - "\tBedgraphs:\t['CT']\n", + "\tBedgraphs:\t[]\n", "\tMinimum base quality:\t0\n", "\tMinimum read quality:\t0\n", "\tMinimum distance from end:\t0\n", "\tMaximum edits per read:\tNone\n", - "\tContigs:\tall\n", + "\tContigs:\t18\n", "\tNumber of intervals:\t1\n", "\tCores:\t1\n", "\tVerbose:\tFalse\n", - "\tKeep intermediate files:\tFalse\n", + "\tKeep intermediate files:\tTrue\n", "\tSkip coverage?:\tFalse\n", "\n", ":::: :::: ::: ::::::::: ::::::::::: :::: ::: :::::::::: \n", @@ -111,22 +111,28 @@ "==================================================================\n", "Multi-core Algorithm for Rapid Identification of Nucleotide Edits\n", "==================================================================\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", + "WARNING /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/pair_test is not empty\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", "~~~~~~~~~~~~~~~~~~\n", "Identifying edits\n", "~~~~~~~~~~~~~~~~~~\n", "Each contig is being split into 1 subsets...\n", - "\tContig Citrine.dna\n", + "\tContig 18\n", "1 total jobs\n", - "Reads processed:\t44\n", - "Time to process reads in min:\t0.03127\n", - "Summary:\t Citrine.dna\n", - "edited 25\n", - "no_edits 19\n", + "Reads processed:\t10\n", + "Time to process reads in min:\t0.01962\n", + "Read Summary:\n", + "edited 6\n", + "no_edits 2\n", + "secondary 2\n", + "total_edits 6\n", + "dtype: int64\n", "\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "\tsplit Citrine.dna_000_0_741, 0/1...\n", + "\tsplit 18_000_0_80373285, 0/1...\n", "Done grouping! Concatenating ...\n", "Done concatenating!\n" ] @@ -135,26 +141,8 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 1/1 [00:01<00:00, 1.84s/it]\n", - "100%|██████████| 1/1 [00:01<00:00, 1.90s/it]\n", - "/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py:498: SettingWithCopyWarning: \n", - "A value is trying to be set on a copy of a slice from a DataFrame.\n", - "Try using .loc[row_indexer,col_indexer] = value instead\n", - "\n", - "See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy\n", - " sites_for_conversion['edit_fraction'] = sites_for_conversion['count']/sites_for_conversion['coverage']\n", - "/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py:499: SettingWithCopyWarning: \n", - "A value is trying to be set on a copy of a slice from a DataFrame.\n", - "Try using .loc[row_indexer,col_indexer] = value instead\n", - "\n", - "See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy\n", - " sites_for_conversion['start'] = sites_for_conversion['position'] - 1\n", - "***** WARNING: File /tmp/pybedtools.opv1qqpw.tmp has inconsistent naming convention for record:\n", - "Citrine.dna\t413\t415\tno_barcode_Citrine.dna_414_G_C_+\tG>C\t+\n", - "\n", - "***** WARNING: File /tmp/pybedtools.opv1qqpw.tmp has inconsistent naming convention for record:\n", - "Citrine.dna\t413\t415\tno_barcode_Citrine.dna_414_G_C_+\tG>C\t+\n", - "\n" + "100%|██████████| 1/1 [00:01<00:00, 1.14s/it]\n", + "100%|██████████| 1/1 [00:01<00:00, 1.19s/it]\n" ] }, { @@ -163,40 +151,25 @@ "text": [ "Concatenating results...\n", "Done concatenating.\n", - "Total time to calculate coverage: 0.032 minutes\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Filtering and calculating site-level statistics\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Loading edit information...\n", + "original 6\n", + "filtered 4\n", + "dtype: int64\n", + "Total time to calculate coverage: 0.02 minutes\n", "Filtering..\n", - "~~~~~~~~~~~~~~~~~~~~~~~\n", - "Filtering edited sites\n", - "~~~~~~~~~~~~~~~~~~~~~~~\n", - "Minimum distance from end = 0, Minimum base-calling quality = 0\n", - "Deduplicating....\n", - "\tNumber of edits before filtering:\n", - "\t37\n", "\tNumber of edits after filtering:\n", - "\t37\n", - "\tNumber of edits after deduplicating:\n", - "\t37\n", + "\t4\n", "\tNumber of unique edit sites:\n", - "\t14\n", + "\t2\n", "Writing sites...\n", "\n", "Adding strand-specific conversion...\n", "\n", - "14 sites being converted to SAILOR format...\n", + "2 sites being converted to SAILOR format...\n", "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", "2 final deduplicated SAILOR-formatted sites\n", - "Making bedgraphs for ['CT'] conversions...\n", - "\n", - "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed...\n", - "Current memory usage 21.673684MB; Peak: 22.78224MB\n", - "Time elapsed: 4.74s\n", - "-------------------------------\n", - "Deleting intermediate files...\n", - "-------------------------------\n", + "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/cellranger-GRCh38-3.0.0.annotation.genes.bed...\n", + "Current memory usage 21.320465MB; Peak: 22.430359MB\n", + "Time elapsed: 3.12s\n", "++++++\n", "Done!\n", "++++++\n" @@ -217,8 +190,8 @@ "export MARINE=/tscc/projects/ps-yeolab3/ekofman/sailor2/\n", "export mypython=/tscc/nfs/home/ekofman/miniconda3/envs/marine_environment/bin/python\n", "\n", - "for t in \"unstranded_pair_test\" # \"F1R2_pair_test-single_end_mode\" \"F1R2_pair_test\" \"F2R1_end_second_in_pair_test\" \"same_pos_dif_reads_test\" \"tax1bp3_chr17_3665556_read_test\" \"pair_test\"\n", - "\n", + "#for t in \"unstranded_pair_test\" \"F1R2_pair_test-single_end_mode\" \"F1R2_pair_test\" \"F2R1_end_second_in_pair_test\" \"same_pos_dif_reads_test\" \"tax1bp3_chr17_3665556_read_test\" \"pair_test\"\n", + "for t in \"pair_test\"\n", "do\n", " echo $t\n", " echo \"Removing old files...\"\n", @@ -233,7 +206,7 @@ }, { "cell_type": "code", - "execution_count": 28, + "execution_count": 8, "id": "57192b28-b498-4f81-bdcd-0d4d14f644ff", "metadata": { "scrolled": true @@ -247,20 +220,7 @@ "Running\n", "/tscc/projects/ps-yeolab3/ekofman/sailor2\n", "only_5_cells_test\n", - "Removing old files...\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "rm: cannot remove 'tests/singlecell_tests/only_5_cells_test/*': No such file or directory\n" - ] - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ + "Removing old files...\n", "Running old tests...\n", "Assuming 16 cores available for multiprocessing. Set this to the number of available cores for optimal execution.\n", "Arguments:\n", @@ -275,14 +235,16 @@ "\tFiltering only:\tFalse\n", "\tAnnotation only:\tFalse\n", "\tSailor outputs:\tFalse\n", + "\tBedgraphs:\t[]\n", "\tMinimum base quality:\t0\n", "\tMinimum read quality:\t0\n", "\tMinimum distance from end:\t0\n", - "\tmax_edits_per_read:\tNone\n", + "\tMaximum edits per read:\tNone\n", "\tContigs:\t9\n", "\tNumber of intervals:\t16\n", "\tCores:\t16\n", - "\tVerbose:\tTrue\n", + "\tVerbose:\tFalse\n", + "\tKeep intermediate files:\tFalse\n", "\tSkip coverage?:\tFalse\n", "\n", ":::: :::: ::: ::::::::: ::::::::::: :::: ::: :::::::::: \n", @@ -295,1873 +257,95 @@ "==================================================================\n", "Multi-core Algorithm for Rapid Identification of Nucleotide Edits\n", "==================================================================\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", + "WARNING /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/singlecell_tests/only_5_cells_test is not empty\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", "~~~~~~~~~~~~~~~~~~\n", "Identifying edits\n", "~~~~~~~~~~~~~~~~~~\n", "Each contig is being split into 16 subsets...\n", - "contig_lengths_dict:{'1': 195471971, '10': 130694993, '11': 122082543, '12': 120129022, '13': 120421639, '14': 124902244, '15': 104043685, '16': 98207768, '17': 94987271, '18': 90702639, '19': 61431566, '2': 182113224, '3': 160039680, '4': 156508116, '5': 151834684, '6': 149736546, '7': 145441459, '8': 129401213, '9': 124595110, 'MT': 16299, 'X': 171031299, 'Y': 91744698, 'JH584299.1': 953012, 'GL456233.1': 336933, 'JH584301.1': 259875, 'GL456211.1': 241735, 'GL456350.1': 227966, 'JH584293.1': 207968, 'GL456221.1': 206961, 'JH584297.1': 205776, 'JH584296.1': 199368, 'GL456354.1': 195993, 'JH584294.1': 191905, 'JH584298.1': 184189, 'JH584300.1': 182347, 'GL456219.1': 175968, 'GL456210.1': 169725, 'JH584303.1': 158099, 'JH584302.1': 155838, 'GL456212.1': 153618, 'JH584304.1': 114452, 'GL456379.1': 72385, 'GL456216.1': 66673, 'GL456393.1': 55711, 'GL456366.1': 47073, 'GL456367.1': 42057, 'GL456239.1': 40056, 'GL456213.1': 39340, 'GL456383.1': 38659, 'GL456385.1': 35240, 'GL456360.1': 31704, 'GL456378.1': 31602, 'GL456389.1': 28772, 'GL456372.1': 28664, 'GL456370.1': 26764, 'GL456381.1': 25871, 'GL456387.1': 24685, 'GL456390.1': 24668, 'GL456394.1': 24323, 'GL456392.1': 23629, 'GL456382.1': 23158, 'GL456359.1': 22974, 'GL456396.1': 21240, 'GL456368.1': 20208, 'JH584292.1': 14945, 'JH584295.1': 1976, 'Stamp': 5397}\n", "\tContig 9\n", "16 total jobs\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 6C20C38G18T15\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:2:1265:4128:23015\n", - "A01535:287:H3JJHDSX7:2:1265:4128:23015\t16\t#18\t3000442\t255\t101M\t*\t0\t0\tGTTTTTTAGTGATTTCGTCATTTTTCATGTCGTCAAGTGGATGTTTCTCATTTTCCATGATTTTCACTTTTCTTGCCATATTCCACGTCCTACAGTGGACA\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 10), ('HI', 3), ('AS', 91), ('nM', 4), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:2'), ('TX', 'ENSMUST00000181242,+909,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GATCCCTCAGTAACGG'), ('CY', 'FFFFFFFFFFF,FFFF'), ('CB', 'GATCCCTCAGTAACGG-1'), ('UR', 'GTCGACTTACCT'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'GTCGACTTACCT'), ('NM', 4), ('MD', '6C20C38G18T15')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 6C20C38G18T15\n", - "CIGAR string 101M\n", - "Reference seq: GTTTTTCAGTGATTTCGTCATTTTTCACGTCGTCAAGTGGATGTTTCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACA\n", - "Aligned seq: GTTTTTTAGTGATTTCGTCATTTTTCATGTCGTCAAGTGGATGTTTCTCATTTTCCATGATTTTCACTTTTCTTGCCATATTCCACGTCCTACAGTGGACA\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " GTTTTTTAGTGATTTCGTCATTTTTCATGTCGTCAAGTGGATGTTTCTCATTTTCCATGATTTTCACTTTTCTTGCCATATTCCACGTCCTACAGTGGACA\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " GTTTTTTAGTGATTTCGTCATTTTTCATGTCGTCAAGTGGATGTTTCTCATTTTCCATGATTTTCACTTTTCTTGCCATATTCCACGTCCTACAGTGGACA\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['6', '20', '38', '18', '15']\n", - "[6, 27, 66, 85, 101]\n", - "Indicated reference seq:\n", - " gtttttCagtgatttcgtcatttttcaCgtcgtcaagtggatgtttctcattttccatgattttcaGttttcttgccatattccaTgtcctacagtggaca\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " gtttttCagtgatttcgtcatttttcaCgtcgtcaagtggatgtttctcattttccatgattttcaGttttcttgccatattccaTgtcctacagtggaca\n", - "Fixed aligned seq:\n", - " GTTTTTTAGTGATTTCGTCATTTTTCATGTCGTCAAGTGGATGTTTCTCATTTTCCATGATTTTCACTTTTCTTGCCATATTCCACGTCCTACAGTGGACA\n", - "Finalized fixed aligned seq:\n", - " gtttttTagtgatttcgtcatttttcaTgtcgtcaagtggatgtttctcattttccatgattttcaCttttcttgccatattccaCgtcctacagtggaca\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373737373737373737373737373737373737373737373737373737373711373737373737373737373737373737373737373737373737373737373737373737373737253737373737373737371137373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['T', 'T', 'C', 'C']\n", - "ref bases ['C', 'C', 'G', 'T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['T', 'T', 'C', 'C'], ref bases: ['C', 'C', 'G', 'T']\n", - "Getting info: T C 37 7\n", - "Getting info: T C 37 28\n", - "Getting info: C G 37 67\n", - "Getting info: C T 37 86\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 8G0T3T5T25T11T43\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:2:2121:24334:27665\n", - "A01535:287:H3JJHDSX7:2:2121:24334:27665\t16\t#18\t3000470\t255\t101M\t*\t0\t0\tGTCGTCAATGGGAAGTTTCCCATTTTCCATGATTTTCAGTTTTCTCGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTT\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 5), ('HI', 3), ('AS', 87), ('nM', 6), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:2'), ('TX', 'ENSMUST00000181242,+881,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GCTCAAACAAGGTCTT'), ('CY', 'FFFFFFFFFFFFF:FF'), ('CB', 'GCTCAAACAAGGTCTT-1'), ('UR', 'TCGGTTTAATGT'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'TCGGTTTAATGT'), ('NM', 6), ('MD', '8G0T3T5T25T11T43')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 8G0T3T5T25T11T43\n", - "CIGAR string 101M\n", - "Reference seq: GTCGTCAAGTGGATGTTTCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTT\n", - "Aligned seq: GTCGTCAATGGGAAGTTTCCCATTTTCCATGATTTTCAGTTTTCTCGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTT\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " GTCGTCAATGGGAAGTTTCCCATTTTCCATGATTTTCAGTTTTCTCGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTT\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " GTCGTCAATGGGAAGTTTCCCATTTTCCATGATTTTCAGTTTTCTCGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTT\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['8', '0', '3', '5', '25', '11', '43']\n", - "[8, 9, 13, 19, 45, 57, 101]\n", - "Indicated reference seq:\n", - " gtcgtcaaGTggaTgtttcTcattttccatgattttcagttttctTgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttt\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " gtcgtcaaGTggaTgtttcTcattttccatgattttcagttttctTgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttt\n", - "Fixed aligned seq:\n", - " GTCGTCAATGGGAAGTTTCCCATTTTCCATGATTTTCAGTTTTCTCGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTT\n", - "Finalized fixed aligned seq:\n", - " gtcgtcaaTGggaAgtttcCcattttccatgattttcagttttctCgccatattccaCgtcctacagtggacatttctaaattttccacctttttcagttt\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373737373737373737372537373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737372537373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['T', 'G', 'A', 'C', 'C', 'C']\n", - "ref bases ['G', 'T', 'T', 'T', 'T', 'T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['T', 'G', 'A', 'C', 'C', 'C'], ref bases: ['G', 'T', 'T', 'T', 'T', 'T']\n", - "Getting info: T G 37 9\n", - "Getting info: G T 37 10\n", - "Getting info: A T 37 14\n", - "Getting info: C T 37 20\n", - "Getting info: C T 37 46\n", - "Getting info: C T 37 58\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 27G2T4G15C1A0T0G45\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1616:4463:31641\n", - "A01535:287:H3JJHDSX7:1:1616:4463:31641\t16\t#18\t3000473\t255\t101M\t*\t0\t0\tGTCAAGTGGATGTTTCTCATTTTCCATAATCTTCAATTTTCTTGCCATATTACTCATCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCC\tarray('B', [37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 25, 37, 37, 37, 37, 11, 37, 25, 25, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 11, 37, 25, 11, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 9), ('HI', 1), ('AS', 85), ('nM', 7), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+878,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GGGACCTTCGAGCCAC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GGGACCTTCGAGCCAC-1'), ('UR', 'AACCCCATCAAG'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'AACCCCATCAAG'), ('NM', 7), ('MD', '27G2T4G15C1A0T0G45')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 27G2T4G15C1A0T0G45\n", - "CIGAR string 101M\n", - "Reference seq: GTCAAGTGGATGTTTCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCC\n", - "Aligned seq: GTCAAGTGGATGTTTCTCATTTTCCATAATCTTCAATTTTCTTGCCATATTACTCATCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCC\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 25, 37, 37, 37, 37, 11, 37, 25, 25, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 11, 37, 25, 11, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " GTCAAGTGGATGTTTCTCATTTTCCATAATCTTCAATTTTCTTGCCATATTACTCATCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCC\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 25, 37, 37, 37, 37, 11, 37, 25, 25, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 11, 37, 25, 11, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " GTCAAGTGGATGTTTCTCATTTTCCATAATCTTCAATTTTCTTGCCATATTACTCATCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCC\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 25, 37, 37, 37, 37, 11, 37, 25, 25, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 11, 37, 25, 11, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['27', '2', '4', '15', '1', '0', '0', '45']\n", - "[27, 30, 35, 51, 53, 54, 55, 101]\n", - "Indicated reference seq:\n", - " gtcaagtggatgtttctcattttccatGatTttcaGttttcttgccatattCcATGtcctacagtggacatttctaaattttccacctttttcagttttcc\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " gtcaagtggatgtttctcattttccatGatTttcaGttttcttgccatattCcATGtcctacagtggacatttctaaattttccacctttttcagttttcc\n", - "Fixed aligned seq:\n", - " GTCAAGTGGATGTTTCTCATTTTCCATAATCTTCAATTTTCTTGCCATATTACTCATCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCC\n", - "Finalized fixed aligned seq:\n", - " gtcaagtggatgtttctcattttccatAatCttcaAttttcttgccatattAcTCAtcctacagtggacatttctaaattttccacctttttcagttttcc\n", - "Indicated qualities:\n", - " 3737373737372537373737372537253737373711372525373737373737253737373737113725113737371137373737373725373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['A', 'C', 'A', 'A', 'T', 'C', 'A']\n", - "ref bases ['G', 'T', 'G', 'C', 'A', 'T', 'G']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['A', 'C', 'A', 'A', 'T', 'C', 'A'], ref bases: ['G', 'T', 'G', 'C', 'A', 'T', 'G']\n", - "Getting info: A G 37 28\n", - "Getting info: C T 37 31\n", - "Getting info: A G 11 36\n", - "Getting info: A C 37 52\n", - "Getting info: T A 37 54\n", - "Getting info: C T 37 55\n", - "Getting info: A G 37 56\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 4T46A0T24T2C3C16\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1333:1289:8015\n", - "A01535:287:H3JJHDSX7:1:1333:1289:8015\t16\t#18\t3000475\t255\t101M\t*\t0\t0\tCAAGAGGATGTTTCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCTCGTCCTACAGTGGACATTTCTAAATGTTTCACATTTTTCAGTTTTCCTC\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 7), ('HI', 1), ('AS', 87), ('nM', 6), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+876,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GGGACCTTCGAGCCAC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GGGACCTTCGAGCCAC-1'), ('UR', 'ATATAGCACCAC'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'ATATAGCACCAC'), ('NM', 6), ('MD', '4T46A0T24T2C3C16')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 4T46A0T24T2C3C16\n", - "CIGAR string 101M\n", - "Reference seq: CAAGTGGATGTTTCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTC\n", - "Aligned seq: CAAGAGGATGTTTCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCTCGTCCTACAGTGGACATTTCTAAATGTTTCACATTTTTCAGTTTTCCTC\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " CAAGAGGATGTTTCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCTCGTCCTACAGTGGACATTTCTAAATGTTTCACATTTTTCAGTTTTCCTC\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " CAAGAGGATGTTTCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCTCGTCCTACAGTGGACATTTCTAAATGTTTCACATTTTTCAGTTTTCCTC\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['4', '46', '0', '24', '2', '3', '16']\n", - "[4, 51, 52, 77, 80, 84, 101]\n", - "Indicated reference seq:\n", - " caagTggatgtttctcattttccatgattttcagttttcttgccatattccATgtcctacagtggacatttctaaatTttCcacCtttttcagttttcctc\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " caagTggatgtttctcattttccatgattttcagttttcttgccatattccATgtcctacagtggacatttctaaatTttCcacCtttttcagttttcctc\n", - "Fixed aligned seq:\n", - " CAAGAGGATGTTTCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCTCGTCCTACAGTGGACATTTCTAAATGTTTCACATTTTTCAGTTTTCCTC\n", - "Finalized fixed aligned seq:\n", - " caagAggatgtttctcattttccatgattttcagttttcttgccatattccTCgtcctacagtggacatttctaaatGttTcacAtttttcagttttcctc\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373737373737372537373737373737373737373725253737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['A', 'T', 'C', 'G', 'T', 'A']\n", - "ref bases ['T', 'A', 'T', 'T', 'C', 'C']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['A', 'T', 'C', 'G', 'T', 'A'], ref bases: ['T', 'A', 'T', 'T', 'C', 'C']\n", - "Getting info: A T 37 5\n", - "Getting info: T A 37 52\n", - "Getting info: C T 37 53\n", - "Getting info: G T 37 78\n", - "Getting info: T C 37 81\n", - "Getting info: A C 37 85\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 6G24T17T37C13\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:2:1624:24044:8124\n", - "A01535:287:H3JJHDSX7:2:1624:24044:8124\t16\t#18\t3000478\t255\t101M\t*\t0\t0\tGTGGATTTTTCTCATTTTCCATGATTTTCAGATTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTTAGTTTTCCTCGCC\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 2), ('HI', 1), ('AS', 91), ('nM', 4), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:2'), ('TX', 'ENSMUST00000181242,+873,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GGGACCTTCGAGCCAC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GGGACCTTCGAGCCAC-1'), ('UR', 'TTAAGCAATGAC'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'TTAAGCAATGAC'), ('NM', 4), ('MD', '6G24T17T37C13')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 6G24T17T37C13\n", - "CIGAR string 101M\n", - "Reference seq: GTGGATGTTTCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCC\n", - "Aligned seq: GTGGATTTTTCTCATTTTCCATGATTTTCAGATTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTTAGTTTTCCTCGCC\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " GTGGATTTTTCTCATTTTCCATGATTTTCAGATTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTTAGTTTTCCTCGCC\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " GTGGATTTTTCTCATTTTCCATGATTTTCAGATTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTTAGTTTTCCTCGCC\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['6', '24', '17', '37', '13']\n", - "[6, 31, 49, 87, 101]\n", - "Indicated reference seq:\n", - " gtggatGtttctcattttccatgattttcagTtttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttCagttttcctcgcc\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " gtggatGtttctcattttccatgattttcagTtttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttCagttttcctcgcc\n", - "Fixed aligned seq:\n", - " GTGGATTTTTCTCATTTTCCATGATTTTCAGATTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTTAGTTTTCCTCGCC\n", - "Finalized fixed aligned seq:\n", - " gtggatTtttctcattttccatgattttcagAtttcttgccatattccaCgtcctacagtggacatttctaaattttccacctttttTagttttcctcgcc\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['T', 'A', 'C', 'T']\n", - "ref bases ['G', 'T', 'T', 'C']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['T', 'A', 'C', 'T'], ref bases: ['G', 'T', 'T', 'C']\n", - "Getting info: T G 37 7\n", - "Getting info: A T 37 32\n", - "Getting info: C T 37 50\n", - "Getting info: T C 37 88\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 40T37C22\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1164:4336:24408\n", - "A01535:287:H3JJHDSX7:1:1164:4336:24408\t16\t#18\t3000487\t255\t101M\t*\t0\t0\tTCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTAAGTTTTCCTCGCCATATTTCAC\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 2), ('HI', 1), ('AS', 95), ('nM', 2), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+864,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GATCCCTCAGTAACGG'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GATCCCTCAGTAACGG-1'), ('UR', 'CAACCATCCTTT'), ('UY', ':F:FFFFFFFFF'), ('UB', 'TAACCATCCTTT'), ('NM', 2), ('MD', '40T37C22')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 40T37C22\n", - "CIGAR string 101M\n", - "Reference seq: TCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCAC\n", - "Aligned seq: TCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTAAGTTTTCCTCGCCATATTTCAC\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " TCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTAAGTTTTCCTCGCCATATTTCAC\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " TCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTAAGTTTTCCTCGCCATATTTCAC\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['40', '37', '22']\n", - "[40, 78, 101]\n", - "Indicated reference seq:\n", - " tctcattttccatgattttcagttttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttCagttttcctcgccatatttcac\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " tctcattttccatgattttcagttttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttCagttttcctcgccatatttcac\n", - "Fixed aligned seq:\n", - " TCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTAAGTTTTCCTCGCCATATTTCAC\n", - "Finalized fixed aligned seq:\n", - " tctcattttccatgattttcagttttcttgccatattccaCgtcctacagtggacatttctaaattttccacctttttAagttttcctcgccatatttcac\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373737373737373737373737372537373737373737373737373737373737372537373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C', 'A']\n", - "ref bases ['T', 'C']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C', 'A'], ref bases: ['T', 'C']\n", - "Getting info: C T 37 41\n", - "Getting info: A C 37 79\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 39T57C3\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:2250:27552:14199\n", - "A01535:287:H3JJHDSX7:1:2250:27552:14199\t16\t#18\t3000488\t255\t101M\t*\t0\t0\tCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCAAGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTTACG\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 8), ('HI', 5), ('AS', 95), ('nM', 2), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+863,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GGGACCTTCGAGCCAC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GGGACCTTCGAGCCAC-1'), ('UR', 'ACTAGTTCCGCC'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'ACTAGTTCCGCC'), ('NM', 2), ('MD', '39T57C3')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 39T57C3\n", - "CIGAR string 101M\n", - "Reference seq: CTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACG\n", - "Aligned seq: CTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCAAGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTTACG\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " CTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCAAGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTTACG\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " CTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCAAGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTTACG\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['39', '57', '3']\n", - "[39, 97, 101]\n", - "Indicated reference seq:\n", - " ctcattttccatgattttcagttttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttCacg\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " ctcattttccatgattttcagttttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttCacg\n", - "Fixed aligned seq:\n", - " CTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCAAGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTTACG\n", - "Finalized fixed aligned seq:\n", - " ctcattttccatgattttcagttttcttgccatattccaAgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttTacg\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373737373737373737373737253737373737253737373737373737373737373737373737373737373737373737373737253737373737373737372537373737372537373725373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['A', 'T']\n", - "ref bases ['T', 'C']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['A', 'T'], ref bases: ['T', 'C']\n", - "Getting info: A T 37 40\n", - "Getting info: T C 37 98\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 39T42T18\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:2:2476:25934:27962\n", - "A01535:287:H3JJHDSX7:2:2476:25934:27962\t16\t#18\t3000488\t255\t101M\t*\t0\t0\tCTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTGTCCTCGCCATATTTCACG\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 6), ('HI', 1), ('AS', 95), ('nM', 2), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:2'), ('TX', 'ENSMUST00000181242,+863,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GTTCATTAGTCATTGC'), ('CY', 'F:FFFFFFFFFFFFFF'), ('CB', 'GTTCATTAGTCATTGC-1'), ('UR', 'GCGTATACTAGT'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'GCGTATACTAGT'), ('NM', 2), ('MD', '39T42T18')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 39T42T18\n", - "CIGAR string 101M\n", - "Reference seq: CTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACG\n", - "Aligned seq: CTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTGTCCTCGCCATATTTCACG\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " CTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTGTCCTCGCCATATTTCACG\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " CTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTGTCCTCGCCATATTTCACG\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['39', '42', '18']\n", - "[39, 82, 101]\n", - "Indicated reference seq:\n", - " ctcattttccatgattttcagttttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttTtcctcgccatatttcacg\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " ctcattttccatgattttcagttttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttTtcctcgccatatttcacg\n", - "Fixed aligned seq:\n", - " CTCATTTTCCATGATTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTGTCCTCGCCATATTTCACG\n", - "Finalized fixed aligned seq:\n", - " ctcattttccatgattttcagttttcttgccatattccaCgtcctacagtggacatttctaaattttccacctttttcagttGtcctcgccatatttcacg\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373725373737373737373737373737373737373725373737373737373737373737373737373737373737373725373737373737373737373737373725373737372537373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C', 'G']\n", - "ref bases ['T', 'T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C', 'G'], ref bases: ['T', 'T']\n", - "Getting info: C T 37 40\n", - "Getting info: G T 37 83\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 16G16C1T47C2C13\n", - "CIGAR tag 1S100M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:2559:9643:5259\n", - "A01535:287:H3JJHDSX7:1:2559:9643:5259\t16\t#18\t3000492\t255\t1S100M\t*\t0\t0\tGTTTTCCATGATTTTCAATTTTCTTGCCATATTCGACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTAGCTATATTTCACGTCC\tarray('B', [37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 2), ('HI', 1), ('AS', 88), ('nM', 5), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+860,100M1S'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GATCCCTCAGTAACGG'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GATCCCTCAGTAACGG-1'), ('UR', 'TCATTTGAAGCA'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'TCATTTGAAGCA'), ('NM', 5), ('MD', '16G16C1T47C2C13')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 16G16C1T47C2C13\n", - "CIGAR string 1S100M\n", - "Reference seq: TTTTCCATGATTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCC\n", - "Aligned seq: GTTTTCCATGATTTTCAATTTTCTTGCCATATTCGACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTAGCTATATTTCACGTCC\n", - "Qualities: array('B', [37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(4, 1), (0, 100)]\n", - "Aligned sequence before clipping (if needed):\n", - " GTTTTCCATGATTTTCAATTTTCTTGCCATATTCGACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTAGCTATATTTCACGTCC\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 100)]\n", - "Aligned sequence after clipping (if needed):\n", - " TTTTCCATGATTTTCAATTTTCTTGCCATATTCGACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTAGCTATATTTCACGTCC\n", - "Qualities after clipping:\n", - " array('B', [37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['16', '16', '1', '47', '2', '13']\n", - "[16, 33, 35, 83, 86, 100]\n", - "Indicated reference seq:\n", - " ttttccatgattttcaGttttcttgccatattcCaTgtcctacagtggacatttctaaattttccacctttttcagttttcctCgcCatatttcacgtcc\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " ttttccatgattttcaGttttcttgccatattcCaTgtcctacagtggacatttctaaattttccacctttttcagttttcctCgcCatatttcacgtcc\n", - "Fixed aligned seq:\n", - " TTTTCCATGATTTTCAATTTTCTTGCCATATTCGACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTAGCTATATTTCACGTCC\n", - "Finalized fixed aligned seq:\n", - " ttttccatgattttcaAttttcttgccatattcGaCgtcctacagtggacatttctaaattttccacctttttcagttttcctAgcTatatttcacgtcc\n", - "Indicated qualities:\n", - " 37253737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737372537373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['A', 'G', 'C', 'A', 'T']\n", - "ref bases ['G', 'C', 'T', 'C', 'C']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['A', 'G', 'C', 'A', 'T'], ref bases: ['G', 'C', 'T', 'C', 'C']\n", - "Getting info: A G 37 17\n", - "Getting info: G C 37 34\n", - "Getting info: C T 37 36\n", - "Getting info: A C 37 84\n", - "Getting info: T C 37 87\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 9A25T64\n", - "CIGAR tag 1S100M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1570:27326:7326\n", - "A01535:287:H3JJHDSX7:1:1570:27326:7326\t16\t#18\t3000492\t255\t1S100M\t*\t0\t0\tTTTTTCCATGTTTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCC\tarray('B', [11, 37, 37, 37, 37, 11, 25, 11, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 3), ('HI', 3), ('AS', 94), ('nM', 2), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+860,100M1S'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GGGACCTTCGAGCCAC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GGGACCTTCGAGCCAC-1'), ('UR', 'AATAATTTTGAT'), ('UY', 'FF:FFFF:FFF:'), ('UB', 'AATAATTTTGAT'), ('NM', 2), ('MD', '9A25T64')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 9A25T64\n", - "CIGAR string 1S100M\n", - "Reference seq: TTTTCCATGATTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCC\n", - "Aligned seq: TTTTTCCATGTTTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCC\n", - "Qualities: array('B', [11, 37, 37, 37, 37, 11, 25, 11, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(4, 1), (0, 100)]\n", - "Aligned sequence before clipping (if needed):\n", - " TTTTTCCATGTTTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCC\n", - "Qualities before clipping:\n", - " array('B', [11, 37, 37, 37, 37, 11, 25, 11, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 100)]\n", - "Aligned sequence after clipping (if needed):\n", - " TTTTCCATGTTTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCC\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 11, 25, 11, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['9', '25', '64']\n", - "[9, 35, 100]\n", - "Indicated reference seq:\n", - " ttttccatgAttttcagttttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcc\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " ttttccatgAttttcagttttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcc\n", - "Fixed aligned seq:\n", - " TTTTCCATGTTTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCC\n", - "Finalized fixed aligned seq:\n", - " ttttccatgTttttcagttttcttgccatattccaCgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcc\n", - "Indicated qualities:\n", - " 37373737112511372511373737373737373737373737373737373737372511373737373737373737372537373737373737373737373737373737373737373737373737373737373737373737373725373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['T', 'C']\n", - "ref bases ['A', 'T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['T', 'C'], ref bases: ['A', 'T']\n", - "Getting info: T A 11 10\n", - "Getting info: C T 37 36\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 5T0G0A25T66\n", - "CIGAR tag 100M1S\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1260:12744:18333\n", - "A01535:287:H3JJHDSX7:1:1260:12744:18333\t16\t#18\t3000494\t255\t100M1S\t*\t0\t0\tTTCCACCTTTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAC\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 3), ('HI', 3), ('AS', 90), ('nM', 4), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+858,1S100M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GTTCATTAGTCATTGC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GTTCATTAGTCATTGC-1'), ('UR', 'ACATCACTTACC'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'ACATCACTTACC'), ('NM', 4), ('MD', '5T0G0A25T66')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 5T0G0A25T66\n", - "CIGAR string 100M1S\n", - "Reference seq: TTCCATGATTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTA\n", - "Aligned seq: TTCCACCTTTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAC\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 100), (4, 1)]\n", - "Aligned sequence before clipping (if needed):\n", - " TTCCACCTTTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAC\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 100)]\n", - "Aligned sequence after clipping (if needed):\n", - " TTCCACCTTTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTA\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['5', '0', '0', '25', '66']\n", - "[5, 6, 7, 33, 100]\n", - "Indicated reference seq:\n", - " ttccaTGAttttcagttttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtccta\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " ttccaTGAttttcagttttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtccta\n", - "Fixed aligned seq:\n", - " TTCCACCTTTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTA\n", - "Finalized fixed aligned seq:\n", - " ttccaCCTttttcagttttcttgccatattccaCgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtccta\n", - "Indicated qualities:\n", - " 37373737373737373737373737373737373737373737373737373737113737373737373737373737373737373737373737373737373737373737373737373737373737373737373711373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C', 'C', 'T', 'C']\n", - "ref bases ['T', 'G', 'A', 'T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C', 'C', 'T', 'C'], ref bases: ['T', 'G', 'A', 'T']\n", - "Getting info: C T 37 6\n", - "Getting info: C G 37 7\n", - "Getting info: T A 37 8\n", - "Getting info: C T 37 34\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 24A7T36T31\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:2540:24713:33552\n", - "A01535:287:H3JJHDSX7:1:2540:24713:33552\t16\t#18\t3000495\t255\t101M\t*\t0\t0\tTCCATGATTTTCAGTTTTCTTGCCTTATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTCCAGTTTTCCTCGCCATATTTCACGTCCTAAA\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 3), ('HI', 2), ('AS', 93), ('nM', 3), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+856,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GGGACCTTCGAGCCAC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GGGACCTTCGAGCCAC-1'), ('UR', 'CATACATAAATA'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'CATACATAAATA'), ('NM', 3), ('MD', '24A7T36T31')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 24A7T36T31\n", - "CIGAR string 101M\n", - "Reference seq: TCCATGATTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAA\n", - "Aligned seq: TCCATGATTTTCAGTTTTCTTGCCTTATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTCCAGTTTTCCTCGCCATATTTCACGTCCTAAA\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " TCCATGATTTTCAGTTTTCTTGCCTTATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTCCAGTTTTCCTCGCCATATTTCACGTCCTAAA\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " TCCATGATTTTCAGTTTTCTTGCCTTATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTCCAGTTTTCCTCGCCATATTTCACGTCCTAAA\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['24', '7', '36', '31']\n", - "[24, 32, 69, 101]\n", - "Indicated reference seq:\n", - " tccatgattttcagttttcttgccAtattccaTgtcctacagtggacatttctaaattttccaccttttTcagttttcctcgccatatttcacgtcctaaa\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " tccatgattttcagttttcttgccAtattccaTgtcctacagtggacatttctaaattttccaccttttTcagttttcctcgccatatttcacgtcctaaa\n", - "Fixed aligned seq:\n", - " TCCATGATTTTCAGTTTTCTTGCCTTATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTCCAGTTTTCCTCGCCATATTTCACGTCCTAAA\n", - "Finalized fixed aligned seq:\n", - " tccatgattttcagttttcttgccTtattccaCgtcctacagtggacatttctaaattttccaccttttCcagttttcctcgccatatttcacgtcctaaa\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373737373737373737373737373737373737373737373737373737373737372537373737373737373737373737373737253737373737373737373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['T', 'C', 'C']\n", - "ref bases ['A', 'T', 'T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['T', 'C', 'C'], ref bases: ['A', 'T', 'T']\n", - "Getting info: T A 37 25\n", - "Getting info: C T 37 33\n", - "Getting info: C T 37 70\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 28T34T9\n", - "CIGAR tag 73M28S\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1270:29234:10191\n", - "A01535:287:H3JJHDSX7:1:1270:29234:10191\t16\t#18\t3000499\t255\t73M28S\t*\t0\t0\tTGATTTTCAGTTTTCTTGCCATATTCCAAGTCCTACAGTGGACATTTCTAAATTTTCCACCTTATTCAGTTTTCCCATGTACTCTGCGTTGATACCACTGC\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 25, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 25, 37, 37, 37, 25, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 37, 25, 37, 25, 11, 37, 37, 37, 37])\t[('NH', 10), ('HI', 8), ('AS', 67), ('nM', 2), ('ts', 28), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+880,28S73M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GCTCAAACAAGGTCTT'), ('CY', 'FF,FF:FFFF:,FF:F'), ('CB', 'GCTCAAACAAGGTCTT-1'), ('UR', 'CTGACACAGCAA'), ('UY', 'FFFFFF:F,FFF'), ('UB', 'CTGACACAGCAA'), ('NM', 2), ('MD', '28T34T9')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 28T34T9\n", - "CIGAR string 73M28S\n", - "Reference seq: TGATTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTT\n", - "Aligned seq: TGATTTTCAGTTTTCTTGCCATATTCCAAGTCCTACAGTGGACATTTCTAAATTTTCCACCTTATTCAGTTTTCCCATGTACTCTGCGTTGATACCACTGC\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 25, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 25, 37, 37, 37, 25, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 37, 25, 37, 25, 11, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 73), (4, 28)]\n", - "Aligned sequence before clipping (if needed):\n", - " TGATTTTCAGTTTTCTTGCCATATTCCAAGTCCTACAGTGGACATTTCTAAATTTTCCACCTTATTCAGTTTTCCCATGTACTCTGCGTTGATACCACTGC\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 25, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 25, 37, 37, 37, 25, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 37, 25, 37, 25, 11, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 73)]\n", - "Aligned sequence after clipping (if needed):\n", - " TGATTTTCAGTTTTCTTGCCATATTCCAAGTCCTACAGTGGACATTTCTAAATTTTCCACCTTATTCAGTTTT\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 25, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['28', '34', '9']\n", - "[28, 63, 73]\n", - "Indicated reference seq:\n", - " tgattttcagttttcttgccatattccaTgtcctacagtggacatttctaaattttccaccttTttcagtttt\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " tgattttcagttttcttgccatattccaTgtcctacagtggacatttctaaattttccaccttTttcagtttt\n", - "Fixed aligned seq:\n", - " TGATTTTCAGTTTTCTTGCCATATTCCAAGTCCTACAGTGGACATTTCTAAATTTTCCACCTTATTCAGTTTT\n", - "Finalized fixed aligned seq:\n", - " tgattttcagttttcttgccatattccaAgtcctacagtggacatttctaaattttccaccttAttcagtttt\n", - "Indicated qualities:\n", - " 37373737373737373737373737373737373711253737372537373725373737253737373725373737373737372537373737373737373737373737113737373725373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['A', 'A']\n", - "ref bases ['T', 'T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['A', 'A'], ref bases: ['T', 'T']\n", - "Getting info: A T 37 29\n", - "Getting info: A T 25 64\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 4C8T10A0T18C5T50\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:2251:20112:14622\n", - "A01535:287:H3JJHDSX7:1:2251:20112:14622\t16\t#18\t3000502\t255\t101M\t*\t0\t0\tTTTTAAGTTTTCTCGCCATATTCCGAGTCCTACAGTGGACATTTTTAAATATTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTA\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 5), ('HI', 3), ('AS', 87), ('nM', 6), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+849,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GGGACCTTCGAGCCAC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GGGACCTTCGAGCCAC-1'), ('UR', 'CTTACATGAGGA'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'CTTACATGAGGA'), ('NM', 6), ('MD', '4C8T10A0T18C5T50')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 4C8T10A0T18C5T50\n", - "CIGAR string 101M\n", - "Reference seq: TTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTA\n", - "Aligned seq: TTTTAAGTTTTCTCGCCATATTCCGAGTCCTACAGTGGACATTTTTAAATATTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTA\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " TTTTAAGTTTTCTCGCCATATTCCGAGTCCTACAGTGGACATTTTTAAATATTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTA\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " TTTTAAGTTTTCTCGCCATATTCCGAGTCCTACAGTGGACATTTTTAAATATTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTA\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['4', '8', '10', '0', '18', '5', '50']\n", - "[4, 13, 24, 25, 44, 50, 101]\n", - "Indicated reference seq:\n", - " ttttCagttttctTgccatattccATgtcctacagtggacatttCtaaatTttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgta\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " ttttCagttttctTgccatattccATgtcctacagtggacatttCtaaatTttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgta\n", - "Fixed aligned seq:\n", - " TTTTAAGTTTTCTCGCCATATTCCGAGTCCTACAGTGGACATTTTTAAATATTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTA\n", - "Finalized fixed aligned seq:\n", - " ttttAagttttctCgccatattccGAgtcctacagtggacatttTtaaatAttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgta\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373737373737253737373737373737373737373737373737373737373737373737373737371137373737373737373737373737373737253737373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['A', 'C', 'G', 'A', 'T', 'A']\n", - "ref bases ['C', 'T', 'A', 'T', 'C', 'T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['A', 'C', 'G', 'A', 'T', 'A'], ref bases: ['C', 'T', 'A', 'T', 'C', 'T']\n", - "Getting info: A C 37 5\n", - "Getting info: C T 37 14\n", - "Getting info: G A 37 25\n", - "Getting info: A T 37 26\n", - "Getting info: T C 37 45\n", - "Getting info: A T 37 51\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 19A5T75\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:2:2246:18340:25614\n", - "A01535:287:H3JJHDSX7:2:2246:18340:25614\t16\t#18\t3000502\t255\t101M\t*\t0\t0\tTTTTCAGTTTTCTTGCCATGTTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTA\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 4), ('HI', 4), ('AS', 95), ('nM', 2), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:2'), ('TX', 'ENSMUST00000181242,+849,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GCTCAAACAAGGTCTT'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GCTCAAACAAGGTCTT-1'), ('UR', 'CAGTTATATGCT'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'CAGTTATATGCT'), ('NM', 2), ('MD', '19A5T75')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 19A5T75\n", - "CIGAR string 101M\n", - "Reference seq: TTTTCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTA\n", - "Aligned seq: TTTTCAGTTTTCTTGCCATGTTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTA\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " TTTTCAGTTTTCTTGCCATGTTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTA\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " TTTTCAGTTTTCTTGCCATGTTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTA\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['19', '5', '75']\n", - "[19, 25, 101]\n", - "Indicated reference seq:\n", - " ttttcagttttcttgccatAttccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgta\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " ttttcagttttcttgccatAttccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgta\n", - "Fixed aligned seq:\n", - " TTTTCAGTTTTCTTGCCATGTTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTA\n", - "Finalized fixed aligned seq:\n", - " ttttcagttttcttgccatGttccaCgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgta\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373725373737373737373737373737373737373737373737372537371137373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['G', 'C']\n", - "ref bases ['A', 'T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['G', 'C'], ref bases: ['A', 'T']\n", - "Getting info: G A 37 20\n", - "Getting info: C T 37 26\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 10T11T6C4G0A0C64\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1139:26711:9048\n", - "A01535:287:H3JJHDSX7:1:1139:26711:9048\t16\t#18\t3000505\t255\t101M\t*\t0\t0\tTCAGTTTTCTAGCCATATTCCACGTCCTAAAGTGTGTATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTT\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 9), ('HI', 2), ('AS', 87), ('nM', 6), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+846,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GGGACCTTCGAGCCAC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GGGACCTTCGAGCCAC-1'), ('UR', 'TTAGAGTGACGC'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'TTAGAGTGACGC'), ('NM', 6), ('MD', '10T11T6C4G0A0C64')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 10T11T6C4G0A0C64\n", - "CIGAR string 101M\n", - "Reference seq: TCAGTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTT\n", - "Aligned seq: TCAGTTTTCTAGCCATATTCCACGTCCTAAAGTGTGTATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTT\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " TCAGTTTTCTAGCCATATTCCACGTCCTAAAGTGTGTATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTT\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " TCAGTTTTCTAGCCATATTCCACGTCCTAAAGTGTGTATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTT\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['10', '11', '6', '4', '0', '0', '64']\n", - "[10, 22, 29, 34, 35, 36, 101]\n", - "Indicated reference seq:\n", - " tcagttttctTgccatattccaTgtcctaCagtgGACatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtattt\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " tcagttttctTgccatattccaTgtcctaCagtgGACatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtattt\n", - "Fixed aligned seq:\n", - " TCAGTTTTCTAGCCATATTCCACGTCCTAAAGTGTGTATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTT\n", - "Finalized fixed aligned seq:\n", - " tcagttttctAgccatattccaCgtcctaAagtgTGTatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtattt\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['A', 'C', 'A', 'T', 'G', 'T']\n", - "ref bases ['T', 'T', 'C', 'G', 'A', 'C']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['A', 'C', 'A', 'T', 'G', 'T'], ref bases: ['T', 'T', 'C', 'G', 'A', 'C']\n", - "Getting info: A T 37 11\n", - "Getting info: C T 37 23\n", - "Getting info: A C 37 30\n", - "Getting info: T G 37 35\n", - "Getting info: G A 37 36\n", - "Getting info: T C 37 37\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 19T16T30C10A3C18\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1373:32434:10066\n", - "A01535:287:H3JJHDSX7:1:1373:32434:10066\t16\t#18\t3000508\t255\t101M\t*\t0\t0\tGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATGTCTAAATTTTCCACCTTTTTCAGTTTTCCTAGCCATATTTCCCGTTCTAAAGTGTGTATTTCTC\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 6), ('HI', 3), ('AS', 89), ('nM', 5), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+843,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GGGACCTTCGAGCCAC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GGGACCTTCGAGCCAC-1'), ('UR', 'CCAGTAAATCTA'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'CCAGTAAATCTA'), ('NM', 5), ('MD', '19T16T30C10A3C18')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 19T16T30C10A3C18\n", - "CIGAR string 101M\n", - "Reference seq: GTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTC\n", - "Aligned seq: GTTTTCTTGCCATATTCCACGTCCTACAGTGGACATGTCTAAATTTTCCACCTTTTTCAGTTTTCCTAGCCATATTTCCCGTTCTAAAGTGTGTATTTCTC\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " GTTTTCTTGCCATATTCCACGTCCTACAGTGGACATGTCTAAATTTTCCACCTTTTTCAGTTTTCCTAGCCATATTTCCCGTTCTAAAGTGTGTATTTCTC\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " GTTTTCTTGCCATATTCCACGTCCTACAGTGGACATGTCTAAATTTTCCACCTTTTTCAGTTTTCCTAGCCATATTTCCCGTTCTAAAGTGTGTATTTCTC\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['19', '16', '30', '10', '3', '18']\n", - "[19, 36, 67, 78, 82, 101]\n", - "Indicated reference seq:\n", - " gttttcttgccatattccaTgtcctacagtggacatTtctaaattttccacctttttcagttttcctCgccatatttcAcgtCctaaagtgtgtatttctc\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " gttttcttgccatattccaTgtcctacagtggacatTtctaaattttccacctttttcagttttcctCgccatatttcAcgtCctaaagtgtgtatttctc\n", - "Fixed aligned seq:\n", - " GTTTTCTTGCCATATTCCACGTCCTACAGTGGACATGTCTAAATTTTCCACCTTTTTCAGTTTTCCTAGCCATATTTCCCGTTCTAAAGTGTGTATTTCTC\n", - "Finalized fixed aligned seq:\n", - " gttttcttgccatattccaCgtcctacagtggacatGtctaaattttccacctttttcagttttcctAgccatatttcCcgtTctaaagtgtgtatttctc\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373725373737373737373737373737373737372537373737373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C', 'G', 'A', 'C', 'T']\n", - "ref bases ['T', 'T', 'C', 'A', 'C']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C', 'G', 'A', 'C', 'T'], ref bases: ['T', 'T', 'C', 'A', 'C']\n", - "Getting info: C T 37 20\n", - "Getting info: G T 37 37\n", - "Getting info: A C 37 68\n", - "Getting info: C A 37 79\n", - "Getting info: T C 37 83\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 19T20A51G8\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:2647:32117:28526\n", - "A01535:287:H3JJHDSX7:1:2647:32117:28526\t16\t#18\t3000508\t255\t101M\t*\t0\t0\tGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTGAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTATATTTCTC\tarray('B', [25, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 7), ('HI', 4), ('AS', 93), ('nM', 3), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+843,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'TACCTGCAGACTTGTC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'TACCTGCAGACTTGTC-1'), ('UR', 'ATGAGTTTGGCT'), ('UY', 'FFFFFFFFFFF,'), ('UB', 'ATGAGTTTGGCT'), ('NM', 3), ('MD', '19T20A51G8')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 19T20A51G8\n", - "CIGAR string 101M\n", - "Reference seq: GTTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTC\n", - "Aligned seq: GTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTGAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTATATTTCTC\n", - "Qualities: array('B', [25, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " GTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTGAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTATATTTCTC\n", - "Qualities before clipping:\n", - " array('B', [25, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " GTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTGAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTATATTTCTC\n", - "Qualities after clipping:\n", - " array('B', [25, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['19', '20', '51', '8']\n", - "[19, 40, 92, 101]\n", - "Indicated reference seq:\n", - " gttttcttgccatattccaTgtcctacagtggacatttctAaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtGtatttctc\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " gttttcttgccatattccaTgtcctacagtggacatttctAaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtGtatttctc\n", - "Fixed aligned seq:\n", - " GTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTGAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTATATTTCTC\n", - "Finalized fixed aligned seq:\n", - " gttttcttgccatattccaCgtcctacagtggacatttctGaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtAtatttctc\n", - "Indicated qualities:\n", - " 2537373737373725373737373737113737373737373737373725373725373737373737373737373737373725373737373737373737373737373737373737113737373737373737373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C', 'G', 'A']\n", - "ref bases ['T', 'A', 'G']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C', 'G', 'A'], ref bases: ['T', 'A', 'G']\n", - "Getting info: C T 37 20\n", - "Getting info: G A 37 41\n", - "Getting info: A G 37 93\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 18T49C14\n", - "CIGAR tag 18S83M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:2:1244:6632:30201\n", - "A01535:287:H3JJHDSX7:2:1244:6632:30201\t16\t#18\t3000509\t255\t18S83M\t*\t0\t0\tTCACGTGGATGTTTCAGATTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGACATATTTCACGTCC\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 4), ('HI', 3), ('AS', 77), ('nM', 2), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:2'), ('TX', 'ENSMUST00000181242,+860,83M18S'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GATCCCTCAGTAACGG'), ('CY', 'FFFFFFF:FFFFFFFF'), ('CB', 'GATCCCTCAGTAACGG-1'), ('UR', 'AGATAAGATATT'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'AGATAAGATATT'), ('NM', 2), ('MD', '18T49C14')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 18T49C14\n", - "CIGAR string 18S83M\n", - "Reference seq: TTTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCC\n", - "Aligned seq: TCACGTGGATGTTTCAGATTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGACATATTTCACGTCC\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(4, 18), (0, 83)]\n", - "Aligned sequence before clipping (if needed):\n", - " TCACGTGGATGTTTCAGATTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGACATATTTCACGTCC\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 83)]\n", - "Aligned sequence after clipping (if needed):\n", - " TTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGACATATTTCACGTCC\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 25, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['18', '49', '14']\n", - "[18, 68, 83]\n", - "Indicated reference seq:\n", - " ttttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgCcatatttcacgtcc\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " ttttcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgCcatatttcacgtcc\n", - "Fixed aligned seq:\n", - " TTTTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGACATATTTCACGTCC\n", - "Finalized fixed aligned seq:\n", - " ttttcttgccatattccaCgtcctacagtggacatttctaaattttccacctttttcagttttcctcgAcatatttcacgtcc\n", - "Indicated qualities:\n", - " 3737373737253737113737373737373737373737373737373737373737373737373737373737373737373737373737373737373725373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C', 'A']\n", - "ref bases ['T', 'C']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C', 'A'], ref bases: ['T', 'C']\n", - "Getting info: C T 37 19\n", - "Getting info: A C 37 69\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 6G10T82\n", - "CIGAR tag 100M1S\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:2363:29604:21605\n", - "A01535:287:H3JJHDSX7:1:2363:29604:21605\t16\t#18\t3000510\t255\t100M1S\t*\t0\t0\tTTTCTTCCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCAA\tarray('B', [25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 25, 25, 25, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 8), ('HI', 1), ('AS', 94), ('nM', 2), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+842,1S100M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GTTCATTAGTCATTGC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GTTCATTAGTCATTGC-1'), ('UR', 'GAACACCATTAC'), ('UY', 'FFFFFFFF:FFF'), ('UB', 'GAACACCATTAC'), ('NM', 2), ('MD', '6G10T82')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 6G10T82\n", - "CIGAR string 100M1S\n", - "Reference seq: TTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCA\n", - "Aligned seq: TTTCTTCCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCAA\n", - "Qualities: array('B', [25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 25, 25, 25, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 100), (4, 1)]\n", - "Aligned sequence before clipping (if needed):\n", - " TTTCTTCCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCAA\n", - "Qualities before clipping:\n", - " array('B', [25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 25, 25, 25, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 100)]\n", - "Aligned sequence after clipping (if needed):\n", - " TTTCTTCCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCA\n", - "Qualities after clipping:\n", - " array('B', [25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 25, 25, 25, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['6', '10', '82']\n", - "[6, 17, 100]\n", - "Indicated reference seq:\n", - " tttcttGccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctca\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " tttcttGccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctca\n", - "Fixed aligned seq:\n", - " TTTCTTCCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCA\n", - "Finalized fixed aligned seq:\n", - " tttcttCccatattccaCgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctca\n", - "Indicated qualities:\n", - " 25373737373737373737373737373737373725252525371137373737373737373737373737373737373737373737373737372537373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C', 'C']\n", - "ref bases ['G', 'T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C', 'C'], ref bases: ['G', 'T']\n", - "Getting info: C G 37 7\n", - "Getting info: C T 37 18\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 5T0G10T28C20C33\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1637:12219:8312\n", - "A01535:287:H3JJHDSX7:1:1637:12219:8312\t16\t#18\t3000510\t255\t101M\t*\t0\t0\tTTTCTCACCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCTACCTTTTTCAGTTTTCCTCGACATATTTCACGTCCTAAAGTGTGTATTTCTCAT\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 6), ('HI', 1), ('AS', 89), ('nM', 5), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+841,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'TATCTGCAGACTTGTC'), ('CY', 'F,FFFFFFFFFFFFFF'), ('CB', 'TACCTGCAGACTTGTC-1'), ('UR', 'CTTCCACGCCAC'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'CTTCCACGCCAC'), ('NM', 5), ('MD', '5T0G10T28C20C33')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 5T0G10T28C20C33\n", - "CIGAR string 101M\n", - "Reference seq: TTTCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCAT\n", - "Aligned seq: TTTCTCACCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCTACCTTTTTCAGTTTTCCTCGACATATTTCACGTCCTAAAGTGTGTATTTCTCAT\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " TTTCTCACCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCTACCTTTTTCAGTTTTCCTCGACATATTTCACGTCCTAAAGTGTGTATTTCTCAT\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " TTTCTCACCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCTACCTTTTTCAGTTTTCCTCGACATATTTCACGTCCTAAAGTGTGTATTTCTCAT\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['5', '0', '10', '28', '20', '33']\n", - "[5, 6, 17, 46, 67, 101]\n", - "Indicated reference seq:\n", - " tttctTGccatattccaTgtcctacagtggacatttctaaattttcCacctttttcagttttcctcgCcatatttcacgtcctaaagtgtgtatttctcat\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " tttctTGccatattccaTgtcctacagtggacatttctaaattttcCacctttttcagttttcctcgCcatatttcacgtcctaaagtgtgtatttctcat\n", - "Fixed aligned seq:\n", - " TTTCTCACCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCTACCTTTTTCAGTTTTCCTCGACATATTTCACGTCCTAAAGTGTGTATTTCTCAT\n", - "Finalized fixed aligned seq:\n", - " tttctCAccatattccaCgtcctacagtggacatttctaaattttcTacctttttcagttttcctcgAcatatttcacgtcctaaagtgtgtatttctcat\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737253737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C', 'A', 'C', 'T', 'A']\n", - "ref bases ['T', 'G', 'T', 'C', 'C']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C', 'A', 'C', 'T', 'A'], ref bases: ['T', 'G', 'T', 'C', 'C']\n", - "Getting info: C T 37 6\n", - "Getting info: A G 37 7\n", - "Getting info: C T 37 18\n", - "Getting info: T C 37 47\n", - "Getting info: A C 37 68\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 15T85\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:2129:30436:4288\n", - "A01535:287:H3JJHDSX7:1:2129:30436:4288\t16\t#18\t3000512\t255\t101M\t*\t0\t0\tTCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTT\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37])\t[('NH', 4), ('HI', 1), ('AS', 97), ('nM', 1), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+839,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GCTCAAACAAGGTCTT'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GCTCAAACAAGGTCTT-1'), ('UR', 'TGTGTCTAACGG'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'TGTGTCTAACGG'), ('NM', 1), ('MD', '15T85')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 15T85\n", - "CIGAR string 101M\n", - "Reference seq: TCTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTT\n", - "Aligned seq: TCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTT\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " TCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTT\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " TCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTT\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['15', '85']\n", - "[15, 101]\n", - "Indicated reference seq:\n", - " tcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctcattt\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " tcttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctcattt\n", - "Fixed aligned seq:\n", - " TCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTT\n", - "Finalized fixed aligned seq:\n", - " tcttgccatattccaCgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctcattt\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373725373737373737373737253737373737373737373737373737373737373725373737373737373737373737373737373737373737373737373737373725372537373737373737373737373737373725373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C']\n", - "ref bases ['T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C'], ref bases: ['T']\n", - "Getting info: C T 37 16\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 14T36T26\n", - "CIGAR tag 78M23S\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1276:2031:35916\n", - "A01535:287:H3JJHDSX7:1:1276:2031:35916\t16\t#18\t3000513\t255\t78M23S\t*\t0\t0\tCTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTGCAGTTTTCCTCGCCATATTTCACGTCCCCATGTACTCTGCGTTGATACC\tarray('B', [37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 6), ('HI', 2), ('AS', 72), ('nM', 2), ('ts', 23), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+861,23S78M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GGGACCTTCGAGCCAC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GGGACCTTCGAGCCAC-1'), ('UR', 'CGTCATTTTCTT'), ('UY', 'FFFFFFFFF:FF'), ('UB', 'CGTCATTTTCTT'), ('NM', 2), ('MD', '14T36T26')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 14T36T26\n", - "CIGAR string 78M23S\n", - "Reference seq: CTTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTC\n", - "Aligned seq: CTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTGCAGTTTTCCTCGCCATATTTCACGTCCCCATGTACTCTGCGTTGATACC\n", - "Qualities: array('B', [37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 78), (4, 23)]\n", - "Aligned sequence before clipping (if needed):\n", - " CTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTGCAGTTTTCCTCGCCATATTTCACGTCCCCATGTACTCTGCGTTGATACC\n", - "Qualities before clipping:\n", - " array('B', [37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 78)]\n", - "Aligned sequence after clipping (if needed):\n", - " CTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTGCAGTTTTCCTCGCCATATTTCACGTC\n", - "Qualities after clipping:\n", - " array('B', [37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['14', '36', '26']\n", - "[14, 51, 78]\n", - "Indicated reference seq:\n", - " cttgccatattccaTgtcctacagtggacatttctaaattttccaccttttTcagttttcctcgccatatttcacgtc\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " cttgccatattccaTgtcctacagtggacatttctaaattttccaccttttTcagttttcctcgccatatttcacgtc\n", - "Fixed aligned seq:\n", - " CTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTGCAGTTTTCCTCGCCATATTTCACGTC\n", - "Finalized fixed aligned seq:\n", - " cttgccatattccaCgtcctacagtggacatttctaaattttccaccttttGcagttttcctcgccatatttcacgtc\n", - "Indicated qualities:\n", - " 372537373737373737373725373737373737373737373737253737373737373737373737373737373737373737373737373737373737373737253737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C', 'G']\n", - "ref bases ['T', 'T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C', 'G'], ref bases: ['T', 'T']\n", - "Getting info: C T 37 15\n", - "Getting info: G T 37 52\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 13T87\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1126:7111:36072\n", - "A01535:287:H3JJHDSX7:1:1126:7111:36072\t16\t#18\t3000514\t255\t101M\t*\t0\t0\tTTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTC\tarray('B', [37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 11, 37, 25, 37, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37])\t[('NH', 4), ('HI', 1), ('AS', 97), ('nM', 1), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+837,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GCTCAAACAAGGTCTT'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GCTCAAACAAGGTCTT-1'), ('UR', 'CTGCATCTTAGC'), ('UY', 'F:FFFFFFFFFF'), ('UB', 'CTGCATCTTAGC'), ('NM', 1), ('MD', '13T87')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 13T87\n", - "CIGAR string 101M\n", - "Reference seq: TTGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTC\n", - "Aligned seq: TTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTC\n", - "Qualities: array('B', [37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 11, 37, 25, 37, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " TTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTC\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 11, 37, 25, 37, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " TTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTC\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 11, 37, 25, 37, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['13', '87']\n", - "[13, 101]\n", - "Indicated reference seq:\n", - " ttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctcattttc\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " ttgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctcattttc\n", - "Fixed aligned seq:\n", - " TTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTC\n", - "Finalized fixed aligned seq:\n", - " ttgccatattccaCgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctcattttc\n", - "Indicated qualities:\n", - " 3737372537373737373711372537372511373737373737373737371137372537373737373737373737373737371137373737371137373737373737373737373737373737372537373737373737373737373737373737373737373737373725373737372537\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C']\n", - "ref bases ['T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C'], ref bases: ['T']\n", - "Getting info: C T 37 14\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 12T44C16T26\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1510:30770:9283\n", - "A01535:287:H3JJHDSX7:1:1510:30770:9283\t16\t#18\t3000515\t255\t101M\t*\t0\t0\tTGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTACTCGCCATATTTCACGCCCTAAAGTGTGTATTTCTCATTTTCC\tarray('B', [37, 37, 25, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 25, 25, 25, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 11, 37, 37, 37, 11, 11, 25, 37, 37, 37, 37, 37, 37, 11, 37, 37, 25, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 25, 25, 25, 37, 37, 37, 25, 37, 11])\t[('NH', 7), ('HI', 1), ('AS', 93), ('nM', 3), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+836,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GCTCAAACAAGGTCTT'), ('CY', 'FFFFFF::,F:F,FF,'), ('CB', 'GCTCAAACAAGGTCTT-1'), ('UR', 'CTCTATCTTCCA'), ('UY', ',F,FFFFFFFFF'), ('UB', 'CTCTATCTTCCA'), ('NM', 3), ('MD', '12T44C16T26')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 12T44C16T26\n", - "CIGAR string 101M\n", - "Reference seq: TGCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTCC\n", - "Aligned seq: TGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTACTCGCCATATTTCACGCCCTAAAGTGTGTATTTCTCATTTTCC\n", - "Qualities: array('B', [37, 37, 25, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 25, 25, 25, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 11, 37, 37, 37, 11, 11, 25, 37, 37, 37, 37, 37, 37, 11, 37, 37, 25, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 25, 25, 25, 37, 37, 37, 25, 37, 11])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " TGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTACTCGCCATATTTCACGCCCTAAAGTGTGTATTTCTCATTTTCC\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 25, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 25, 25, 25, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 11, 37, 37, 37, 11, 11, 25, 37, 37, 37, 37, 37, 37, 11, 37, 37, 25, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 25, 25, 25, 37, 37, 37, 25, 37, 11])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " TGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTACTCGCCATATTTCACGCCCTAAAGTGTGTATTTCTCATTTTCC\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 25, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 25, 37, 25, 25, 25, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 11, 37, 37, 37, 11, 11, 25, 37, 37, 37, 37, 37, 37, 11, 37, 37, 25, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 25, 25, 25, 37, 37, 37, 25, 37, 11])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['12', '44', '16', '26']\n", - "[12, 57, 74, 101]\n", - "Indicated reference seq:\n", - " tgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttCctcgccatatttcacgTcctaaagtgtgtatttctcattttcc\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " tgccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttCctcgccatatttcacgTcctaaagtgtgtatttctcattttcc\n", - "Fixed aligned seq:\n", - " TGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTACTCGCCATATTTCACGCCCTAAAGTGTGTATTTCTCATTTTCC\n", - "Finalized fixed aligned seq:\n", - " tgccatattccaCgtcctacagtggacatttctaaattttccacctttttcagttttActcgccatatttcacgCcctaaagtgtgtatttctcattttcc\n", - "Indicated qualities:\n", - " 3737252537373737253737373737373737373737373737371137253737373725373737372537373737253725252537373737373725373737371137373711112537373737373711373725373711373737373737373725373737373725252525373737253711\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C', 'A', 'C']\n", - "ref bases ['T', 'C', 'T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C', 'A', 'C'], ref bases: ['T', 'C', 'T']\n", - "Getting info: C T 37 13\n", - "Getting info: A C 11 58\n", - "Getting info: C T 37 75\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 11T30C58\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:2:2352:1497:21997\n", - "A01535:287:H3JJHDSX7:2:2352:1497:21997\t16\t#18\t3000516\t255\t101M\t*\t0\t0\tGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCATCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTCCG\tarray('B', [11, 37, 25, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 25, 37, 37, 37, 37, 11, 25, 25, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 4), ('HI', 3), ('AS', 95), ('nM', 2), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:2'), ('TX', 'ENSMUST00000181242,+835,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GCTCAAACAAGGTCTT'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GCTCAAACAAGGTCTT-1'), ('UR', 'ATCAGCACTTCA'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'ATCAGCACTTCA'), ('NM', 2), ('MD', '11T30C58')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 11T30C58\n", - "CIGAR string 101M\n", - "Reference seq: GCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTCCG\n", - "Aligned seq: GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCATCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTCCG\n", - "Qualities: array('B', [11, 37, 25, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 25, 37, 37, 37, 37, 11, 25, 25, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCATCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTCCG\n", - "Qualities before clipping:\n", - " array('B', [11, 37, 25, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 25, 37, 37, 37, 37, 11, 25, 25, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCATCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTCCG\n", - "Qualities after clipping:\n", - " array('B', [11, 37, 25, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 25, 37, 37, 37, 37, 11, 25, 25, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 25, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['11', '30', '58']\n", - "[11, 42, 101]\n", - "Indicated reference seq:\n", - " gccatattccaTgtcctacagtggacatttctaaattttccaCctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctcattttccg\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " gccatattccaTgtcctacagtggacatttctaaattttccaCctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctcattttccg\n", - "Fixed aligned seq:\n", - " GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCATCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTCCG\n", - "Finalized fixed aligned seq:\n", - " gccatattccaCgtcctacagtggacatttctaaattttccaTctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctcattttccg\n", - "Indicated qualities:\n", - " 1137253725373737373737372525373737371125253725113737373737373737373737253737253737373725373737373737372537373737372537373737373737373737373737373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C', 'T']\n", - "ref bases ['T', 'C']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C', 'T'], ref bases: ['T', 'C']\n", - "Getting info: C T 37 12\n", - "Getting info: T C 37 43\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 11T67\n", - "CIGAR tag 79M22S\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1676:3495:8015\n", - "A01535:287:H3JJHDSX7:1:1676:3495:8015\t16\t#18\t3000516\t255\t79M22S\t*\t0\t0\tGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAACCCATGTACTCTGCGTTGATAC\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 4), ('HI', 2), ('AS', 75), ('nM', 1), ('ts', 22), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+857,22S79M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GGGACCTTCGAGCCAC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GGGACCTTCGAGCCAC-1'), ('UR', 'TTACTTCTCGCT'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'TTACTTCTCGCT'), ('NM', 1), ('MD', '11T67')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 11T67\n", - "CIGAR string 79M22S\n", - "Reference seq: GCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAA\n", - "Aligned seq: GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAACCCATGTACTCTGCGTTGATAC\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 79), (4, 22)]\n", - "Aligned sequence before clipping (if needed):\n", - " GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAACCCATGTACTCTGCGTTGATAC\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 79)]\n", - "Aligned sequence after clipping (if needed):\n", - " GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAA\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['11', '67']\n", - "[11, 79]\n", - "Indicated reference seq:\n", - " gccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaa\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " gccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaa\n", - "Fixed aligned seq:\n", - " GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAA\n", - "Finalized fixed aligned seq:\n", - " gccatattccaCgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaa\n", - "Indicated qualities:\n", - " 37373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737253737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C']\n", - "ref bases ['T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C'], ref bases: ['T']\n", - "Getting info: C T 37 12\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 11T62\n", - "CIGAR tag 74M27S\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:2169:17173:9940\n", - "A01535:287:H3JJHDSX7:1:2169:17173:9940\t16\t#18\t3000516\t255\t74M27S\t*\t0\t0\tGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCCATGTACTCTGCGTTGATACCACTG\tarray('B', [37, 37, 37, 37, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 8), ('HI', 3), ('AS', 70), ('nM', 1), ('ts', 27), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+862,27S74M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'TACCTGCAGACTTGTC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'TACCTGCAGACTTGTC-1'), ('UR', 'ACCCTAAGTATT'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'ACCCTAAGTATT'), ('NM', 1), ('MD', '11T62')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 11T62\n", - "CIGAR string 74M27S\n", - "Reference seq: GCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGT\n", - "Aligned seq: GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCCATGTACTCTGCGTTGATACCACTG\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 74), (4, 27)]\n", - "Aligned sequence before clipping (if needed):\n", - " GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCCATGTACTCTGCGTTGATACCACTG\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 74)]\n", - "Aligned sequence after clipping (if needed):\n", - " GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGT\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 25, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 25, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['11', '62']\n", - "[11, 74]\n", - "Indicated reference seq:\n", - " gccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgt\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " gccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgt\n", - "Fixed aligned seq:\n", - " GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGT\n", - "Finalized fixed aligned seq:\n", - " gccatattccaCgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgt\n", - "Indicated qualities:\n", - " 3737373737251137373737373737373737373737373737373737373737373737373737373737373737373737373711253737373737373737373737373737373737373737373725373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C']\n", - "ref bases ['T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C'], ref bases: ['T']\n", - "Getting info: C T 37 12\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 11T81A7\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:2330:18539:29653\n", - "A01535:287:H3JJHDSX7:1:2330:18539:29653\t16\t#18\t3000516\t255\t101M\t*\t0\t0\tGCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCCTTTTCCG\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 4), ('HI', 3), ('AS', 95), ('nM', 2), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+835,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GTTCATTAGTCATTGC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GTTCATTAGTCATTGC-1'), ('UR', 'ACAAGTCCCACG'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'ACAAGTCCCACG'), ('NM', 2), ('MD', '11T81A7')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 11T81A7\n", - "CIGAR string 101M\n", - "Reference seq: GCCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTCCG\n", - "Aligned seq: GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCCTTTTCCG\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCCTTTTCCG\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence after clipping (if needed):\n", - " GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCCTTTTCCG\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['11', '81', '7']\n", - "[11, 93, 101]\n", - "Indicated reference seq:\n", - " gccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctcAttttccg\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " gccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctcAttttccg\n", - "Fixed aligned seq:\n", - " GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCCTTTTCCG\n", - "Finalized fixed aligned seq:\n", - " gccatattccaCgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgtcctaaagtgtgtatttctcCttttccg\n", - "Indicated qualities:\n", - " 3737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C', 'C']\n", - "ref bases ['T', 'A']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C', 'C'], ref bases: ['T', 'A']\n", - "Getting info: C T 37 12\n", - "Getting info: C A 37 94\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 10T62\n", - "CIGAR tag 73M28S\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:1:1232:21612:6731\n", - "A01535:287:H3JJHDSX7:1:1232:21612:6731\t16\t#18\t3000517\t255\t73M28S\t*\t0\t0\tCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCCATGTACTCTGCGTTGATACCACTGC\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\t[('NH', 8), ('HI', 3), ('AS', 69), ('nM', 1), ('ts', 28), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:1'), ('TX', 'ENSMUST00000181242,+862,28S73M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'TACCTGCAGACTTGTC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'TACCTGCAGACTTGTC-1'), ('UR', 'TTTAAGCCGTTG'), ('UY', 'FFFFFFFFFF:F'), ('UB', 'TTTAAGCCGTTG'), ('NM', 1), ('MD', '10T62')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 10T62\n", - "CIGAR string 73M28S\n", - "Reference seq: CCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGT\n", - "Aligned seq: CCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCCATGTACTCTGCGTTGATACCACTGC\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 73), (4, 28)]\n", - "Aligned sequence before clipping (if needed):\n", - " CCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCCATGTACTCTGCGTTGATACCACTGC\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "Soft clipping quality scores ...\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "CIGAR tuples after clipping (if needed):\n", - " [(0, 73)]\n", - "Aligned sequence after clipping (if needed):\n", - " CCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGT\n", - "Qualities after clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37])\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "['10', '62']\n", - "[10, 73]\n", - "Indicated reference seq:\n", - " ccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgt\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " ccatattccaTgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgt\n", - "Fixed aligned seq:\n", - " CCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGT\n", - "Finalized fixed aligned seq:\n", - " ccatattccaCgtcctacagtggacatttctaaattttccacctttttcagttttcctcgccatatttcacgt\n", - "Indicated qualities:\n", - " 37373737373737373737373737373737373737373737373737373737373737373737373737373737373737113737373737373737373737373737373737373737373737373737373737\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "alt bases ['C']\n", - "ref bases ['T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['C'], ref bases: ['T']\n", - "Getting info: C T 37 11\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "MD tag 8C1T18C26C6T37\n", - "CIGAR tag 101M\n", - "is_reverse True\n", - "is_read1 False\n", - "is_read2 False\n", - "is_paired False\n", - "is_proper_pair False\n", - "mate_is_reverse False\n", - "read id A01535:287:H3JJHDSX7:2:2101:3766:32628\n", - "A01535:287:H3JJHDSX7:2:2101:3766:32628\t16\t#18\t3000517\t255\t101M\t*\t0\t0\tCCATATTCTACGTCCTACAGTGGACATTTTTAAATTTTCCACCTTTTTCAGTTTTCTTCGCCACATTTCACGTCCTAAAGTGTGTATTTCTCATTTTCCGT\tarray('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 11, 37, 37, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37])\t[('NH', 8), ('HI', 4), ('AS', 89), ('nM', 5), ('RG', 'ms_hippo_stamp_EIF4A_batch2:0:1:H3JJHDSX7:2'), ('TX', 'ENSMUST00000181242,+834,101M'), ('GX', 'ENSMUSG00000097312'), ('GN', 'Gm26870'), ('fx', 'ENSMUSG00000097312'), ('RE', 'E'), ('MM', 1), ('xf', 25), ('CR', 'GGGACCTTCGAGCCAC'), ('CY', 'FFFFFFFFFFFFFFFF'), ('CB', 'GGGACCTTCGAGCCAC-1'), ('UR', 'ACCGTATTTTGT'), ('UY', 'FFFFFFFFFFFF'), ('UB', 'ACCGTATTTTGT'), ('NM', 5), ('MD', '8C1T18C26C6T37')]\n", - "reverse_or_forward: -\n", - "----------------------------\n", - "MD tag: 8C1T18C26C6T37\n", - "CIGAR string 101M\n", - "Reference seq: CCATATTCCATGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGCCATATTTCACGTCCTAAAGTGTGTATTTCTCATTTTCCGT\n", - "Aligned seq: CCATATTCTACGTCCTACAGTGGACATTTTTAAATTTTCCACCTTTTTCAGTTTTCTTCGCCACATTTCACGTCCTAAAGTGTGTATTTCTCATTTTCCGT\n", - "Qualities: array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 11, 37, 37, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37])\n", - "CIGAR tuples before clipping (if needed):\n", - " [(0, 101)]\n", - "Aligned sequence before clipping (if needed):\n", - " CCATATTCTACGTCCTACAGTGGACATTTTTAAATTTTCCACCTTTTTCAGTTTTCTTCGCCACATTTCACGTCCTAAAGTGTGTATTTCTCATTTTCCGT\n", - "Qualities before clipping:\n", - " array('B', [37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 11, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 37, 25, 37, 11, 37, 37, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 25, 37, 37, 37, 37, 37, 37])\n", - "9:006, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "9:001, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "9:004, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "9:005, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "9:002, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "9:007, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "9:010, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "9:009, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "9:008, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "9:015, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "9:013, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "9:014, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "9:011, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", "Reads processed:\t31\n", - "Time to process reads in min:\t0.02746\n", - "Summary:\t 9\n", - "edited 31\n", + "Time to process reads in min:\t0.1486\n", + "Read Summary:\n", + "edited 31\n", + "total_edits 99\n", + "dtype: int64\n", "\n", - "Contigs processed:\n", + "Contigs processed\n", "\n", "\t['9']\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Splitting and reconfiguring BAMs to optimize coverage calculations\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Contig 9 has 0/4 bams generated\n", - "Will split and reconfigure the following contigs: 9\n" + "Contig 9 has 0/4 bams generated\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 16/16 [00:01<00:00, 10.43it/s]\n" + "100%|██████████| 16/16 [00:08<00:00, 1.85it/s]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Total time to concat and write bams: 0.026 minutes\n", + "\t4 suffixes\n", + "Total time to concat and write bams: 0.143 minutes\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "\tsplit 9_000_0_7787195, 0/16...\n", "\tsplit 9_010_77871950_85659145, 10/16...\n", "Done grouping! Concatenating ...\n", - "Done concatenating!\n", - "edit_info_grouped_per_contig_combined dict_keys(['9_A-1', '9_C-1', '9_G-1', '9_T-1'])\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "100%|██████████| 1/1 [00:01<00:00, 1.47s/it]\n" - ] - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ - "barcode_specific_contig_without_subdivision: 9_GATCCCTCAGTAACGG-1\n", - "barcode_specific_contig_without_subdivision: 9_GATCCCTCAGTAACGG-1\n", - "barcode_specific_contig_without_subdivision: 9_GATCCCTCAGTAACGG-1\n", - "barcode_specific_contig_without_subdivision: 9_GATCCCTCAGTAACGG-1\n", - "barcode_specific_contig_without_subdivision: 9_GATCCCTCAGTAACGG-1\n", - "barcode_specific_contig_without_subdivision: 9_GATCCCTCAGTAACGG-1\n", - "barcode_specific_contig_without_subdivision: 9_GATCCCTCAGTAACGG-1\n", - "barcode_specific_contig_without_subdivision: 9_GATCCCTCAGTAACGG-1\n", - "barcode_specific_contig_without_subdivision: 9_GATCCCTCAGTAACGG-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GGGACCTTCGAGCCAC-1\n", - "barcode_specific_contig_without_subdivision: 9_GTTCATTAGTCATTGC-1\n", - "barcode_specific_contig_without_subdivision: 9_GTTCATTAGTCATTGC-1\n", - "barcode_specific_contig_without_subdivision: 9_GTTCATTAGTCATTGC-1\n", - "barcode_specific_contig_without_subdivision: 9_GTTCATTAGTCATTGC-1\n", - "barcode_specific_contig_without_subdivision: 9_GTTCATTAGTCATTGC-1\n", - "barcode_specific_contig_without_subdivision: 9_GTTCATTAGTCATTGC-1\n", - "barcode_specific_contig_without_subdivision: 9_GTTCATTAGTCATTGC-1\n", - "barcode_specific_contig_without_subdivision: 9_TACCTGCAGACTTGTC-1\n", - "barcode_specific_contig_without_subdivision: 9_TACCTGCAGACTTGTC-1\n", - "barcode_specific_contig_without_subdivision: 9_TACCTGCAGACTTGTC-1\n", - "barcode_specific_contig_without_subdivision: 9_TACCTGCAGACTTGTC-1\n", - "barcode_specific_contig_without_subdivision: 9_TACCTGCAGACTTGTC-1\n", - "barcode_specific_contig_without_subdivision: 9_TACCTGCAGACTTGTC-1\n", - "barcode_specific_contig_without_subdivision: 9_TACCTGCAGACTTGTC-1\n", - "barcode_specific_contig_without_subdivision: 9_GCTCAAACAAGGTCTT-1\n", - "barcode_specific_contig_without_subdivision: 9_GCTCAAACAAGGTCTT-1\n", - "barcode_specific_contig_without_subdivision: 9_GCTCAAACAAGGTCTT-1\n", - "barcode_specific_contig_without_subdivision: 9_GCTCAAACAAGGTCTT-1\n", - "barcode_specific_contig_without_subdivision: 9_GCTCAAACAAGGTCTT-1\n", - "barcode_specific_contig_without_subdivision: 9_GCTCAAACAAGGTCTT-1\n", - "barcode_specific_contig_without_subdivision: 9_GCTCAAACAAGGTCTT-1\n", - "barcode_specific_contig_without_subdivision: 9_GCTCAAACAAGGTCTT-1\n", - "barcode_specific_contig_without_subdivision: 9_GCTCAAACAAGGTCTT-1\n", - "barcode_specific_contig_without_subdivision: 9_GCTCAAACAAGGTCTT-1\n", - "barcode_specific_contig_without_subdivision: 9_GCTCAAACAAGGTCTT-1\n" + "Done concatenating!\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 4/4 [00:01<00:00, 3.03it/s]\n" + "100%|██████████| 1/1 [00:08<00:00, 8.33s/it]\n", + " 0%| | 0/4 [00:07\n", + " run(bam_filepath, \n", + " File \"/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py\", line 347, in run\n", + " results, total_time, total_seconds_for_contig_df = coverage_processing(output_folder, \n", + " File \"/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py\", line 132, in coverage_processing\n", + " results, total_time, total_seconds_for_contig = run_coverage_calculator(edit_info_grouped_per_contig_combined, output_folder,\n", + " File \"/tscc/projects/ps-yeolab3/ekofman/sailor2/src/core.py\", line 327, in run_coverage_calculator\n", + " for _ in p.imap_unordered(get_coverage_wrapper, coverage_counting_job_params):\n", + " File \"/tscc/nfs/home/ekofman/miniconda3/envs/marine_environment/lib/python3.8/multiprocessing/pool.py\", line 868, in next\n", + " raise value\n", + "AttributeError: 'DataFrameGroupBy' object has no attribute 'coverage'\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Concatenating results...\n", - "Done concatenating.\n", - "Total time to calculate coverage: 0.023 minutes\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Filtering and calculating site-level statistics\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Loading edit information...\n", - "Filtering..\n", - "~~~~~~~~~~~~~~~~~~~~~~~\n", - "Filtering edited sites\n", - "~~~~~~~~~~~~~~~~~~~~~~~\n", - "Minimum distance from end = 0, Minimum base-calling quality = 0\n", - "Deduplicating....\n", - "\tNumber of edits before filtering:\n", - "\t99\n", - "\tNumber of edits after filtering:\n", - "\t99\n", - "\tNumber of edits after deduplicating:\n", - "\t99\n", - "\tNumber of unique edit sites:\n", - "\t73\n", - "Writing sites...\n", - "\n", - "Adding strand-specific conversion...\n", - "\n", - "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/cellranger-mm10-3.0.0.annotation.genes.bed...\n", - "Current memory usage 21.795658MB; Peak: 22.904126MB\n", - "Time elapsed: 5.62s\n", - "++++++\n", - "Done!\n", - "++++++\n", "long_read_sc_test\n", - "Removing old files...\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "rm: cannot remove 'tests/singlecell_tests/long_read_sc_test/*': No such file or directory\n" - ] - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ + "Removing old files...\n", "Running old tests...\n", "Assuming 16 cores available for multiprocessing. Set this to the number of available cores for optimal execution.\n", "Arguments:\n", @@ -2176,14 +360,16 @@ "\tFiltering only:\tFalse\n", "\tAnnotation only:\tFalse\n", "\tSailor outputs:\tFalse\n", + "\tBedgraphs:\t[]\n", "\tMinimum base quality:\t0\n", "\tMinimum read quality:\t0\n", "\tMinimum distance from end:\t0\n", - "\tmax_edits_per_read:\tNone\n", + "\tMaximum edits per read:\tNone\n", "\tContigs:\t6\n", "\tNumber of intervals:\t4\n", "\tCores:\t16\n", "\tVerbose:\tFalse\n", + "\tKeep intermediate files:\tFalse\n", "\tSkip coverage?:\tFalse\n", "\n", ":::: :::: ::: ::::::::: ::::::::::: :::: ::: :::::::::: \n", @@ -2196,6 +382,9 @@ "==================================================================\n", "Multi-core Algorithm for Rapid Identification of Nucleotide Edits\n", "==================================================================\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", + "WARNING /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/singlecell_tests/long_read_sc_test is not empty\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", "Barcodes in whitelist: 3\n", "~~~~~~~~~~~~~~~~~~\n", "Identifying edits\n", @@ -2204,12 +393,14 @@ "\tContig 6\n", "4 total jobs\n", "Reads processed:\t13\n", - "Time to process reads in min:\t0.0232\n", - "Summary:\t 6\n", - "edited 3\n", - "no_edits 10\n", + "Time to process reads in min:\t0.14613\n", + "Read Summary:\n", + "edited 3\n", + "no_edits 10\n", + "total_edits 3\n", + "dtype: int64\n", "\n", - "Contigs processed:\n", + "Contigs processed\n", "\n", "\t['6']\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -2222,14 +413,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 4/4 [00:01<00:00, 3.07it/s]\n" + "100%|██████████| 4/4 [00:08<00:00, 2.12s/it]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Total time to concat and write bams: 0.276 minutes\n", + "Total time to concat and write bams: 0.331 minutes\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -2242,45 +433,50 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 1/1 [00:16<00:00, 16.48s/it]\n", - "100%|██████████| 400/400 [00:02<00:00, 138.86it/s]\n" + "100%|██████████| 1/1 [00:19<00:00, 19.47s/it]\n", + " 0%| | 0/400 [00:07\n", + " run(bam_filepath, \n", + " File \"/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py\", line 347, in run\n", + " results, total_time, total_seconds_for_contig_df = coverage_processing(output_folder, \n", + " File \"/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py\", line 132, in coverage_processing\n", + " results, total_time, total_seconds_for_contig = run_coverage_calculator(edit_info_grouped_per_contig_combined, output_folder,\n", + " File \"/tscc/projects/ps-yeolab3/ekofman/sailor2/src/core.py\", line 327, in run_coverage_calculator\n", + " for _ in p.imap_unordered(get_coverage_wrapper, coverage_counting_job_params):\n", + " File \"/tscc/nfs/home/ekofman/miniconda3/envs/marine_environment/lib/python3.8/multiprocessing/pool.py\", line 868, in next\n", + " raise value\n", + "AttributeError: 'DataFrameGroupBy' object has no attribute 'coverage'\n" ] }, { - "name": "stdout", - "output_type": "stream", - "text": [ - "Concatenating results...\n", - "Done concatenating.\n", - "Total time to calculate coverage: 0.05 minutes\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Filtering and calculating site-level statistics\n", - "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Loading edit information...\n", - "Filtering..\n", - "~~~~~~~~~~~~~~~~~~~~~~~\n", - "Filtering edited sites\n", - "~~~~~~~~~~~~~~~~~~~~~~~\n", - "Minimum distance from end = 0, Minimum base-calling quality = 0\n", - "Deduplicating....\n", - "\tNumber of edits before filtering:\n", - "\t3\n", - "\tNumber of edits after filtering:\n", - "\t3\n", - "\tNumber of edits after deduplicating:\n", - "\t3\n", - "\tNumber of unique edit sites:\n", - "\t3\n", - "Writing sites...\n", - "\n", - "Adding strand-specific conversion...\n", - "\n", - "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/cellranger-mm10-3.0.0.annotation.genes.bed...\n", - "Current memory usage 21.444407MB; Peak: 22.556205MB\n", - "Time elapsed: 24.32s\n", - "++++++\n", - "Done!\n", - "++++++\n" + "ename": "CalledProcessError", + "evalue": "Command 'b'\\npwd\\necho \"Running\"\\n\\ncd ..\\npwd\\n\\nexport MARINE=/tscc/projects/ps-yeolab3/ekofman/sailor2/\\nexport mypython=/tscc/nfs/home/ekofman/miniconda3/envs/marine_environment/bin/python\\n\\ntests_folder=\"tests/singlecell_tests/\"\\nfor t in \"only_5_cells_test\" \"long_read_sc_test\"\\n\\ndo\\n echo $t\\n echo \"Removing old files...\"\\n rm $tests_folder$t/* -r\\n\\n echo \"Running old tests...\"\\n bash tests/singlecell_tests/scripts/$t.sh $mypython\\n \\ndone\\n'' returned non-zero exit status 1.", + "output_type": "error", + "traceback": [ + "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", + "\u001b[0;31mCalledProcessError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[0;32mIn[8], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m \u001b[43mget_ipython\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mrun_cell_magic\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;124;43mbash\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mpwd\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mecho \u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mRunning\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mcd ..\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mpwd\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mexport MARINE=/tscc/projects/ps-yeolab3/ekofman/sailor2/\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mexport mypython=/tscc/nfs/home/ekofman/miniconda3/envs/marine_environment/bin/python\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mtests_folder=\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mtests/singlecell_tests/\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mfor t in \u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43monly_5_cells_test\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43m \u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mlong_read_sc_test\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mdo\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m echo $t\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m echo \u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mRemoving old files...\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m rm $tests_folder$t/* -r\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m echo \u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mRunning old tests...\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m bash tests/singlecell_tests/scripts/$t.sh $mypython\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m \u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mdone\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m)\u001b[49m\n", + "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/IPython/core/interactiveshell.py:2478\u001b[0m, in \u001b[0;36mInteractiveShell.run_cell_magic\u001b[0;34m(self, magic_name, line, cell)\u001b[0m\n\u001b[1;32m 2476\u001b[0m \u001b[38;5;28;01mwith\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mbuiltin_trap:\n\u001b[1;32m 2477\u001b[0m args \u001b[38;5;241m=\u001b[39m (magic_arg_s, cell)\n\u001b[0;32m-> 2478\u001b[0m result \u001b[38;5;241m=\u001b[39m \u001b[43mfn\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43margs\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43mkwargs\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 2480\u001b[0m \u001b[38;5;66;03m# The code below prevents the output from being displayed\u001b[39;00m\n\u001b[1;32m 2481\u001b[0m \u001b[38;5;66;03m# when using magics with decodator @output_can_be_silenced\u001b[39;00m\n\u001b[1;32m 2482\u001b[0m \u001b[38;5;66;03m# when the last Python token in the expression is a ';'.\u001b[39;00m\n\u001b[1;32m 2483\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;28mgetattr\u001b[39m(fn, magic\u001b[38;5;241m.\u001b[39mMAGIC_OUTPUT_CAN_BE_SILENCED, \u001b[38;5;28;01mFalse\u001b[39;00m):\n", + "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/IPython/core/magics/script.py:153\u001b[0m, in \u001b[0;36mScriptMagics._make_script_magic..named_script_magic\u001b[0;34m(line, cell)\u001b[0m\n\u001b[1;32m 151\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m 152\u001b[0m line \u001b[38;5;241m=\u001b[39m script\n\u001b[0;32m--> 153\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mshebang\u001b[49m\u001b[43m(\u001b[49m\u001b[43mline\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mcell\u001b[49m\u001b[43m)\u001b[49m\n", + "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/IPython/core/magics/script.py:305\u001b[0m, in \u001b[0;36mScriptMagics.shebang\u001b[0;34m(self, line, cell)\u001b[0m\n\u001b[1;32m 300\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m args\u001b[38;5;241m.\u001b[39mraise_error \u001b[38;5;129;01mand\u001b[39;00m p\u001b[38;5;241m.\u001b[39mreturncode \u001b[38;5;241m!=\u001b[39m \u001b[38;5;241m0\u001b[39m:\n\u001b[1;32m 301\u001b[0m \u001b[38;5;66;03m# If we get here and p.returncode is still None, we must have\u001b[39;00m\n\u001b[1;32m 302\u001b[0m \u001b[38;5;66;03m# killed it but not yet seen its return code. We don't wait for it,\u001b[39;00m\n\u001b[1;32m 303\u001b[0m \u001b[38;5;66;03m# in case it's stuck in uninterruptible sleep. -9 = SIGKILL\u001b[39;00m\n\u001b[1;32m 304\u001b[0m rc \u001b[38;5;241m=\u001b[39m p\u001b[38;5;241m.\u001b[39mreturncode \u001b[38;5;129;01mor\u001b[39;00m \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m9\u001b[39m\n\u001b[0;32m--> 305\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m CalledProcessError(rc, cell)\n", + "\u001b[0;31mCalledProcessError\u001b[0m: Command 'b'\\npwd\\necho \"Running\"\\n\\ncd ..\\npwd\\n\\nexport MARINE=/tscc/projects/ps-yeolab3/ekofman/sailor2/\\nexport mypython=/tscc/nfs/home/ekofman/miniconda3/envs/marine_environment/bin/python\\n\\ntests_folder=\"tests/singlecell_tests/\"\\nfor t in \"only_5_cells_test\" \"long_read_sc_test\"\\n\\ndo\\n echo $t\\n echo \"Removing old files...\"\\n rm $tests_folder$t/* -r\\n\\n echo \"Running old tests...\"\\n bash tests/singlecell_tests/scripts/$t.sh $mypython\\n \\ndone\\n'' returned non-zero exit status 1." ] } ], @@ -2320,7 +516,7 @@ }, { "cell_type": "code", - "execution_count": 31, + "execution_count": 11, "id": "f5c3ed3e-13dd-4399-924e-3d1ac17ce387", "metadata": {}, "outputs": [ @@ -2328,6 +524,13 @@ "name": "stdout", "output_type": "stream", "text": [ + "\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Checking results for unstranded_pair_test\n", + "\tExpecting: {'contig': 'Citrine.dna', 'position': 435, 'count': 22, 'coverage': 22, 'num_rows': 1, 'strand_conversion': 'C>T', 'strand': '+'}\n", + "\n", + "\t >>> unstranded_pair_test passed! <<<\n", + "\n", "\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Checking results for pair_test\n", @@ -2336,22 +539,25 @@ "\t >>> pair_test passed! <<<\n", "\n", "\tExpecting: {'contig': '18', 'position': 49567494, 'count': 2, 'coverage': 2, 'num_rows': 1, 'strand_conversion': 'C>T', 'strand': '+', 'feature_name': 'LIPG', 'feature_strand': '+'}\n", + "Exception: count was 3\n", "\n", - "\t >>> pair_test passed! <<<\n", + "\t ~~~ pair_test FAILED! ~~~\n", "\n", "\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Checking results for F1R2_pair_test\n", "\tExpecting: {'contig': 'chr17', 'position': 43044352, 'count': 1, 'coverage': 1, 'conversion': 'G>A', 'num_rows': 1, 'strand_conversion': 'C>T', 'strand': '-', 'feature_name': 'BRCA1', 'feature_strand': '-'}\n", + "Exception: count was 2\n", "\n", - "\t >>> F1R2_pair_test passed! <<<\n", + "\t ~~~ F1R2_pair_test FAILED! ~~~\n", "\n", "\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Checking results for F1R2_pair_test-single_end_mode\n", "\tExpecting: {'contig': 'chr17', 'position': 43044352, 'count': 1, 'coverage': 2, 'conversion': 'G>A', 'num_rows': 1, 'strand_conversion': 'C>T', 'strand': '-', 'feature_name': 'BRCA1', 'feature_strand': '-'}\n", + "Exception: count was 2\n", "\n", - "\t >>> F1R2_pair_test-single_end_mode passed! <<<\n", + "\t ~~~ F1R2_pair_test-single_end_mode FAILED! ~~~\n", "\n", "\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -2364,8 +570,9 @@ "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Checking results for same_pos_dif_reads_test\n", "\tExpecting: {'contig': 'chr17', 'position': 83199872, 'count': 9, 'coverage': 9, 'conversion': 'C>G', 'strand_conversion': 'C>G', 'strand': '+', 'feature_name': 'AC139099.2'}\n", + "Exception: count was 14\n", "\n", - "\t >>> same_pos_dif_reads_test passed! <<<\n", + "\t ~~~ same_pos_dif_reads_test FAILED! ~~~\n", "\n", "\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -2392,30 +599,23 @@ "\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Checking results for long_read_sc_test\n", - "\tExpecting: {'contig': '6', 'barcode': 'ENSMUST00000203816-AACGTGTTGGAGAGGG-16-G', 'position': 115807969, 'num_rows': 1, 'count': 1, 'coverage': 1, 'conversion': 'A>C', 'strand_conversion': 'T>G', 'strand': '-', 'feature_name': 'Rpl32'}\n", - "\n", - "\t >>> long_read_sc_test passed! <<<\n", - "\n", - "\tExpecting: {'contig': '6', 'barcode': 'ENSMUST00000081840-AAGTCGTACCAGGCTC-40-C', 'position': 115805653, 'num_rows': 1, 'count': 1, 'coverage': 1, 'conversion': 'G>A', 'strand_conversion': 'C>T', 'strand': '-', 'feature_name': 'Rpl32'}\n", - "\n", - "\t >>> long_read_sc_test passed! <<<\n", - "\n", - "\tExpecting: {'contig': '6', 'barcode': 'ENSMUST00000081840-AACGTGTTGGAGAGGG-40-G', 'position': 115807015, 'num_rows': 1, 'count': 1, 'coverage': 8, 'conversion': 'C>T', 'strand_conversion': 'G>A', 'strand': '-', 'feature_name': 'Rpl32'}\n", - "\n", - "\t >>> long_read_sc_test passed! <<<\n", - "\n", - "There were 0 failures\n" + "\tExpecting: {'contig': '6', 'barcode': 'ENSMUST00000203816-AACGTGTTGGAGAGGG-16-G', 'position': 115807969, 'num_rows': 1, 'count': 1, 'coverage': 1, 'conversion': 'A>C', 'strand_conversion': 'T>G', 'strand': '-', 'feature_name': 'Rpl32'}\n" ] }, { - "ename": "NameError", - "evalue": "name 'sys' is not defined", + "ename": "FileNotFoundError", + "evalue": "[Errno 2] No such file or directory: 'singlecell_tests/long_read_sc_test/final_filtered_site_info_annotated.tsv'", "output_type": "error", "traceback": [ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", - "\u001b[0;31mNameError\u001b[0m Traceback (most recent call last)", - "Cell \u001b[0;32mIn[31], line 234\u001b[0m\n\u001b[1;32m 232\u001b[0m sys\u001b[38;5;241m.\u001b[39mexit(\u001b[38;5;241m1\u001b[39m)\n\u001b[1;32m 233\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[0;32m--> 234\u001b[0m \u001b[43msys\u001b[49m\u001b[38;5;241m.\u001b[39mexit(\u001b[38;5;241m0\u001b[39m)\n", - "\u001b[0;31mNameError\u001b[0m: name 'sys' is not defined" + "\u001b[0;31mFileNotFoundError\u001b[0m Traceback (most recent call last)", + "Cell \u001b[0;32mIn[11], line 210\u001b[0m\n\u001b[1;32m 207\u001b[0m position \u001b[38;5;241m=\u001b[39m expectations\u001b[38;5;241m.\u001b[39mget(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mposition\u001b[39m\u001b[38;5;124m\"\u001b[39m)\n\u001b[1;32m 209\u001b[0m final_filtered_site_info_annotated \u001b[38;5;241m=\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;132;01m{}\u001b[39;00m\u001b[38;5;124m/\u001b[39m\u001b[38;5;132;01m{}\u001b[39;00m\u001b[38;5;124m/final_filtered_site_info_annotated.tsv\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;241m.\u001b[39mformat(folder, test_name)\n\u001b[0;32m--> 210\u001b[0m final_filtered_site_info_annotated_df \u001b[38;5;241m=\u001b[39m \u001b[43mpd\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mread_csv\u001b[49m\u001b[43m(\u001b[49m\u001b[43mfinal_filtered_site_info_annotated\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43msep\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;130;43;01m\\t\u001b[39;49;00m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mindex_col\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;241;43m0\u001b[39;49m\u001b[43m)\u001b[49m\n\u001b[1;32m 212\u001b[0m row_of_interest \u001b[38;5;241m=\u001b[39m final_filtered_site_info_annotated_df[\n\u001b[1;32m 213\u001b[0m (final_filtered_site_info_annotated_df[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mposition\u001b[39m\u001b[38;5;124m'\u001b[39m] \u001b[38;5;241m==\u001b[39m position) \u001b[38;5;241m&\u001b[39m\\\n\u001b[1;32m 214\u001b[0m (final_filtered_site_info_annotated_df[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mcontig\u001b[39m\u001b[38;5;124m'\u001b[39m]\u001b[38;5;241m.\u001b[39mastype(\u001b[38;5;28mstr\u001b[39m) \u001b[38;5;241m==\u001b[39m contig)\n\u001b[1;32m 215\u001b[0m ]\n\u001b[1;32m 218\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m barcode:\n", + "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/pandas/io/parsers/readers.py:912\u001b[0m, in \u001b[0;36mread_csv\u001b[0;34m(filepath_or_buffer, sep, delimiter, header, names, index_col, usecols, dtype, engine, converters, true_values, false_values, skipinitialspace, skiprows, skipfooter, nrows, na_values, keep_default_na, na_filter, verbose, skip_blank_lines, parse_dates, infer_datetime_format, keep_date_col, date_parser, date_format, dayfirst, cache_dates, iterator, chunksize, compression, thousands, decimal, lineterminator, quotechar, quoting, doublequote, escapechar, comment, encoding, encoding_errors, dialect, on_bad_lines, delim_whitespace, low_memory, memory_map, float_precision, storage_options, dtype_backend)\u001b[0m\n\u001b[1;32m 899\u001b[0m kwds_defaults \u001b[38;5;241m=\u001b[39m _refine_defaults_read(\n\u001b[1;32m 900\u001b[0m dialect,\n\u001b[1;32m 901\u001b[0m delimiter,\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 908\u001b[0m dtype_backend\u001b[38;5;241m=\u001b[39mdtype_backend,\n\u001b[1;32m 909\u001b[0m )\n\u001b[1;32m 910\u001b[0m kwds\u001b[38;5;241m.\u001b[39mupdate(kwds_defaults)\n\u001b[0;32m--> 912\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43m_read\u001b[49m\u001b[43m(\u001b[49m\u001b[43mfilepath_or_buffer\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mkwds\u001b[49m\u001b[43m)\u001b[49m\n", + "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/pandas/io/parsers/readers.py:577\u001b[0m, in \u001b[0;36m_read\u001b[0;34m(filepath_or_buffer, kwds)\u001b[0m\n\u001b[1;32m 574\u001b[0m _validate_names(kwds\u001b[38;5;241m.\u001b[39mget(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mnames\u001b[39m\u001b[38;5;124m\"\u001b[39m, \u001b[38;5;28;01mNone\u001b[39;00m))\n\u001b[1;32m 576\u001b[0m \u001b[38;5;66;03m# Create the parser.\u001b[39;00m\n\u001b[0;32m--> 577\u001b[0m parser \u001b[38;5;241m=\u001b[39m \u001b[43mTextFileReader\u001b[49m\u001b[43m(\u001b[49m\u001b[43mfilepath_or_buffer\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43mkwds\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 579\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m chunksize \u001b[38;5;129;01mor\u001b[39;00m iterator:\n\u001b[1;32m 580\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m parser\n", + "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/pandas/io/parsers/readers.py:1407\u001b[0m, in \u001b[0;36mTextFileReader.__init__\u001b[0;34m(self, f, engine, **kwds)\u001b[0m\n\u001b[1;32m 1404\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39moptions[\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mhas_index_names\u001b[39m\u001b[38;5;124m\"\u001b[39m] \u001b[38;5;241m=\u001b[39m kwds[\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mhas_index_names\u001b[39m\u001b[38;5;124m\"\u001b[39m]\n\u001b[1;32m 1406\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mhandles: IOHandles \u001b[38;5;241m|\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m\n\u001b[0;32m-> 1407\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_engine \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_make_engine\u001b[49m\u001b[43m(\u001b[49m\u001b[43mf\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mengine\u001b[49m\u001b[43m)\u001b[49m\n", + "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/pandas/io/parsers/readers.py:1661\u001b[0m, in \u001b[0;36mTextFileReader._make_engine\u001b[0;34m(self, f, engine)\u001b[0m\n\u001b[1;32m 1659\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mb\u001b[39m\u001b[38;5;124m\"\u001b[39m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;129;01min\u001b[39;00m mode:\n\u001b[1;32m 1660\u001b[0m mode \u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mb\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[0;32m-> 1661\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mhandles \u001b[38;5;241m=\u001b[39m \u001b[43mget_handle\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 1662\u001b[0m \u001b[43m \u001b[49m\u001b[43mf\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1663\u001b[0m \u001b[43m \u001b[49m\u001b[43mmode\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1664\u001b[0m \u001b[43m \u001b[49m\u001b[43mencoding\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43moptions\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mget\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mencoding\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;28;43;01mNone\u001b[39;49;00m\u001b[43m)\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1665\u001b[0m \u001b[43m \u001b[49m\u001b[43mcompression\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43moptions\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mget\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mcompression\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;28;43;01mNone\u001b[39;49;00m\u001b[43m)\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1666\u001b[0m \u001b[43m \u001b[49m\u001b[43mmemory_map\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43moptions\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mget\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mmemory_map\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;28;43;01mFalse\u001b[39;49;00m\u001b[43m)\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1667\u001b[0m \u001b[43m \u001b[49m\u001b[43mis_text\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mis_text\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1668\u001b[0m \u001b[43m \u001b[49m\u001b[43merrors\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43moptions\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mget\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mencoding_errors\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mstrict\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m)\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1669\u001b[0m \u001b[43m \u001b[49m\u001b[43mstorage_options\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43moptions\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mget\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mstorage_options\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;28;43;01mNone\u001b[39;49;00m\u001b[43m)\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1670\u001b[0m \u001b[43m\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 1671\u001b[0m \u001b[38;5;28;01massert\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mhandles \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m\n\u001b[1;32m 1672\u001b[0m f \u001b[38;5;241m=\u001b[39m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mhandles\u001b[38;5;241m.\u001b[39mhandle\n", + "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/pandas/io/common.py:859\u001b[0m, in \u001b[0;36mget_handle\u001b[0;34m(path_or_buf, mode, encoding, compression, memory_map, is_text, errors, storage_options)\u001b[0m\n\u001b[1;32m 854\u001b[0m \u001b[38;5;28;01melif\u001b[39;00m \u001b[38;5;28misinstance\u001b[39m(handle, \u001b[38;5;28mstr\u001b[39m):\n\u001b[1;32m 855\u001b[0m \u001b[38;5;66;03m# Check whether the filename is to be opened in binary mode.\u001b[39;00m\n\u001b[1;32m 856\u001b[0m \u001b[38;5;66;03m# Binary mode does not support 'encoding' and 'newline'.\u001b[39;00m\n\u001b[1;32m 857\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m ioargs\u001b[38;5;241m.\u001b[39mencoding \u001b[38;5;129;01mand\u001b[39;00m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mb\u001b[39m\u001b[38;5;124m\"\u001b[39m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;129;01min\u001b[39;00m ioargs\u001b[38;5;241m.\u001b[39mmode:\n\u001b[1;32m 858\u001b[0m \u001b[38;5;66;03m# Encoding\u001b[39;00m\n\u001b[0;32m--> 859\u001b[0m handle \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;43mopen\u001b[39;49m\u001b[43m(\u001b[49m\n\u001b[1;32m 860\u001b[0m \u001b[43m \u001b[49m\u001b[43mhandle\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 861\u001b[0m \u001b[43m \u001b[49m\u001b[43mioargs\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mmode\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 862\u001b[0m \u001b[43m \u001b[49m\u001b[43mencoding\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mioargs\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mencoding\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 863\u001b[0m \u001b[43m \u001b[49m\u001b[43merrors\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43merrors\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 864\u001b[0m \u001b[43m \u001b[49m\u001b[43mnewline\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m,\u001b[49m\n\u001b[1;32m 865\u001b[0m \u001b[43m \u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 866\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m 867\u001b[0m \u001b[38;5;66;03m# Binary mode\u001b[39;00m\n\u001b[1;32m 868\u001b[0m handle \u001b[38;5;241m=\u001b[39m \u001b[38;5;28mopen\u001b[39m(handle, ioargs\u001b[38;5;241m.\u001b[39mmode)\n", + "\u001b[0;31mFileNotFoundError\u001b[0m: [Errno 2] No such file or directory: 'singlecell_tests/long_read_sc_test/final_filtered_site_info_annotated.tsv'" ] } ], @@ -2433,33 +633,6 @@ " \"strand\": \"+\"\n", " }]\n", " },\n", - "\n", - " \"pair_test\": {\n", - " \"folder\": \"strandedness_tests\",\n", - " \"expectations\": [{\n", - " \"contig\": \"18\",\n", - " \"position\": 49491556,\n", - " \"count\": 2,\n", - " \"coverage\": 2,\n", - " \"num_rows\": 1,\n", - " \"strand_conversion\": \"C>T\",\n", - " \"strand\": \"-\",\n", - " \"feature_name\": \"RPL17-C18orf32,RPL17\",\n", - " \"feature_strand\": \"-,-\"\n", - " },\n", - " {\n", - " \"contig\": \"18\",\n", - " \"position\": 49567494,\n", - " \"count\": 2,\n", - " \"coverage\": 2,\n", - " \"num_rows\": 1,\n", - " \"strand_conversion\": \"C>T\",\n", - " \"strand\": \"+\",\n", - " \"feature_name\": \"LIPG\",\n", - " \"feature_strand\": \"+\"\n", - " }]\n", - " },\n", - " \n", " \"pair_test\": {\n", " \"folder\": \"strandedness_tests\",\n", " \"expectations\": [{\n", diff --git a/tests/singlecell_tests/scripts/only_5_cells_test.sh b/tests/singlecell_tests/scripts/only_5_cells_test.sh index a30624a..69d441b 100644 --- a/tests/singlecell_tests/scripts/only_5_cells_test.sh +++ b/tests/singlecell_tests/scripts/only_5_cells_test.sh @@ -16,5 +16,4 @@ $MARINE/tests/singlecell_tests/only_5_cells_test \ --barcode_tag "CB" \ --strandedness 2 \ --contigs "9" \ ---verbose \ --num_intervals_per_contig 16 \ No newline at end of file diff --git a/tests/strandedness_tests/scripts/pair_test.sh b/tests/strandedness_tests/scripts/pair_test.sh index e2fbcdd..415e8db 100644 --- a/tests/strandedness_tests/scripts/pair_test.sh +++ b/tests/strandedness_tests/scripts/pair_test.sh @@ -17,5 +17,5 @@ $MARINE/tests/strandedness_tests/pair_test \ --strandedness 2 \ --contigs 18 \ --sailor \ ---verbose \ +--keep_intermediate_files \ --num_intervals_per_contig 1 \ No newline at end of file diff --git a/tests/strandedness_tests/unstranded_pair_test/final_filtered_site_info.tsv b/tests/strandedness_tests/unstranded_pair_test/final_filtered_site_info.tsv index 07c506c..6fc92f0 100644 --- a/tests/strandedness_tests/unstranded_pair_test/final_filtered_site_info.tsv +++ b/tests/strandedness_tests/unstranded_pair_test/final_filtered_site_info.tsv @@ -1,15 +1,15 @@ site_id barcode contig position ref alt strand count coverage conversion strand_conversion -no_barcode_Citrine.dna_414_G_C_+ no_barcode Citrine.dna 414 G C + 1 18 G>C G>C +no_barcode_Citrine.dna_432_C_T_+ no_barcode Citrine.dna 432 C T + 1 22 C>T C>T no_barcode_Citrine.dna_437_A_G_+ no_barcode Citrine.dna 437 A G + 1 22 A>G A>G -no_barcode_Citrine.dna_435_C_T_+ no_barcode Citrine.dna 435 C T + 22 22 C>T C>T -no_barcode_Citrine.dna_149_C_G_+ no_barcode Citrine.dna 149 C G + 1 2 C>G C>G -no_barcode_Citrine.dna_441_C_A_+ no_barcode Citrine.dna 441 C A + 1 22 C>A C>A +no_barcode_Citrine.dna_438_C_A_+ no_barcode Citrine.dna 438 C A + 1 22 C>A C>A +no_barcode_Citrine.dna_439_A_G_+ no_barcode Citrine.dna 439 A G + 1 22 A>G A>G +no_barcode_Citrine.dna_428_A_G_+ no_barcode Citrine.dna 428 A G + 1 20 A>G A>G +no_barcode_Citrine.dna_454_T_G_+ no_barcode Citrine.dna 454 T G + 1 14 T>G T>G no_barcode_Citrine.dna_411_C_A_+ no_barcode Citrine.dna 411 C A + 1 18 C>A C>A +no_barcode_Citrine.dna_441_C_A_+ no_barcode Citrine.dna 441 C A + 1 22 C>A C>A +no_barcode_Citrine.dna_414_G_C_+ no_barcode Citrine.dna 414 G C + 1 18 G>C G>C no_barcode_Citrine.dna_431_A_G_+ no_barcode Citrine.dna 431 A G + 1 22 A>G A>G -no_barcode_Citrine.dna_21_G_A_+ no_barcode Citrine.dna 21 G A + 2 2 G>A G>A -no_barcode_Citrine.dna_432_C_T_+ no_barcode Citrine.dna 432 C T + 1 22 C>T C>T -no_barcode_Citrine.dna_439_A_G_+ no_barcode Citrine.dna 439 A G + 1 22 A>G A>G -no_barcode_Citrine.dna_438_C_A_+ no_barcode Citrine.dna 438 C A + 1 22 C>A C>A no_barcode_Citrine.dna_430_T_G_+ no_barcode Citrine.dna 430 T G + 2 22 T>G T>G -no_barcode_Citrine.dna_454_T_G_+ no_barcode Citrine.dna 454 T G + 1 14 T>G T>G -no_barcode_Citrine.dna_428_A_G_+ no_barcode Citrine.dna 428 A G + 1 20 A>G A>G +no_barcode_Citrine.dna_435_C_T_+ no_barcode Citrine.dna 435 C T + 22 22 C>T C>T +no_barcode_Citrine.dna_21_G_A_+ no_barcode Citrine.dna 21 G A + 2 2 G>A G>A +no_barcode_Citrine.dna_149_C_G_+ no_barcode Citrine.dna 149 C G + 1 2 C>G C>G From 50130bb9ec865f7d7c2c5ca08d38f6e4a4715caa Mon Sep 17 00:00:00 2001 From: Eric Kofman Date: Thu, 25 Jul 2024 14:40:01 -0700 Subject: [PATCH 08/10] comment --- src/core.py | 5 +- tests/integration_tests.ipynb | 2180 +++++++++++++++++++++++++++++++-- 2 files changed, 2072 insertions(+), 113 deletions(-) diff --git a/src/core.py b/src/core.py index 1ea5de6..1ef1a8c 100644 --- a/src/core.py +++ b/src/core.py @@ -49,6 +49,10 @@ def run_edit_identifier(bampath, output_folder, strandedness, barcode_tag="CB", max_ = len(edit_finding_jobs) with tqdm(total=max_) as pbar: for _ in p.imap_unordered(find_edits_and_split_bams_wrapper, edit_finding_jobs): + # values returned within array _ are: + # ~~~~ contig, label, barcode_to_concatted_reads_pl, total_reads, counts_df, time_df, total_time + # So the line overall_label_to_list_of_contents[_[0]][_[1]] = _[2] + # is equivalent to overall_label_to_list_of_contents[contig][label] = barcode_to_concatted_reads_pl pbar.update() if barcode_tag: @@ -59,7 +63,6 @@ def run_edit_identifier(bampath, output_folder, strandedness, barcode_tag="CB", counts_summary_df = _[4] all_counts_summary_dfs.append(counts_summary_df) - total_time = time.perf_counter() - start_time overall_total_reads += total_reads diff --git a/tests/integration_tests.ipynb b/tests/integration_tests.ipynb index 64ad1dd..69f7e86 100644 --- a/tests/integration_tests.ipynb +++ b/tests/integration_tests.ipynb @@ -60,7 +60,7 @@ }, { "cell_type": "code", - "execution_count": 17, + "execution_count": 19, "id": "ba12c2b8-2ccb-4866-86c8-a2284fd1229f", "metadata": { "scrolled": true @@ -73,6 +73,1987 @@ "/tscc/projects/ps-yeolab3/ekofman/sailor2/tests\n", "Running\n", "/tscc/projects/ps-yeolab3/ekofman/sailor2\n", + "unstranded_pair_test\n", + "Removing old files...\n", + "Running tests...\n", + "Assuming 1 cores available for multiprocessing. Set this to the number of available cores for optimal execution.\n", + "Arguments:\n", + "\tBAM filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/bams/citrine435.bam\n", + "\tAnnotation bedfile filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed\n", + "\tOutput folder:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/unstranded_pair_test\n", + "\tBarcode whitelist:\tNone\n", + "\tStrandedness:\t0\n", + "\tBarcode Tag:\tNone\n", + "\tPaired End:\tTrue\n", + "\tCoverage only:\tFalse\n", + "\tFiltering only:\tFalse\n", + "\tAnnotation only:\tFalse\n", + "\tSailor outputs:\tTrue\n", + "\tBedgraphs:\t['CT']\n", + "\tMinimum base quality:\t0\n", + "\tMinimum read quality:\t0\n", + "\tMinimum distance from end:\t0\n", + "\tMaximum edits per read:\tNone\n", + "\tContigs:\tall\n", + "\tNumber of intervals:\t1\n", + "\tCores:\t1\n", + "\tVerbose:\tFalse\n", + "\tKeep intermediate files:\tFalse\n", + "\tSkip coverage?:\tFalse\n", + "\n", + ":::: :::: ::: ::::::::: ::::::::::: :::: ::: :::::::::: \n", + "+:+:+: :+:+:+ :+: :+: :+: :+: :+: :+:+: :+: :+: \n", + "+:+ +:+:+ +:+ +:+ +:+ +:+ +:+ +:+ :+:+:+ +:+ +:+ \n", + "+#+ +:+ +#+ +#++:++#++: +#++:++#: +#+ +#+ +:+ +#+ +#++:++# \n", + "+#+ +#+ +#+ +#+ +#+ +#+ +#+ +#+ +#+#+# +#+ \n", + "#+# #+# #+# #+# #+# #+# #+# #+# #+#+# #+# \n", + "### ### ### ### ### ### ########### ### #### ########## \n", + "==================================================================\n", + "Multi-core Algorithm for Rapid Identification of Nucleotide Edits\n", + "==================================================================\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", + "WARNING /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/unstranded_pair_test is not empty\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", + "~~~~~~~~~~~~~~~~~~\n", + "Identifying edits\n", + "~~~~~~~~~~~~~~~~~~\n", + "Each contig is being split into 1 subsets...\n", + "\tContig Citrine.dna\n", + "1 total jobs\n", + "Reads processed:\t44\n", + "Time to process reads in min:\t0.02512\n", + "Read Summary:\n", + "edited 25\n", + "no_edits 19\n", + "total_edits 37\n", + "dtype: int64\n", + "\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Calculating coverage at edited sites, minimum read quality is 0...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "\tsplit Citrine.dna_000_0_741, 0/1...\n", + "Done grouping! Concatenating ...\n", + "Done concatenating!\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|██████████| 1/1 [00:01<00:00, 1.47s/it]\n", + "100%|██████████| 1/1 [00:01<00:00, 1.01s/it]\n", + "/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py:448: SettingWithCopyWarning: \n", + "A value is trying to be set on a copy of a slice from a DataFrame.\n", + "Try using .loc[row_indexer,col_indexer] = value instead\n", + "\n", + "See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy\n", + " sites_for_conversion['edit_fraction'] = sites_for_conversion['count']/sites_for_conversion['coverage']\n", + "/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py:449: SettingWithCopyWarning: \n", + "A value is trying to be set on a copy of a slice from a DataFrame.\n", + "Try using .loc[row_indexer,col_indexer] = value instead\n", + "\n", + "See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy\n", + " sites_for_conversion['start'] = sites_for_conversion['position'] - 1\n", + "***** WARNING: File /tmp/pybedtools.9on6r3qb.tmp has inconsistent naming convention for record:\n", + "Citrine.dna\t431\t433\tno_barcode_Citrine.dna_432_C_T_+\tC>T\t+\n", + "\n", + "***** WARNING: File /tmp/pybedtools.9on6r3qb.tmp has inconsistent naming convention for record:\n", + "Citrine.dna\t431\t433\tno_barcode_Citrine.dna_432_C_T_+\tC>T\t+\n", + "\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Concatenating results...\n", + "Done concatenating.\n", + "original 37\n", + "filtered 37\n", + "dtype: int64\n", + "Total time to calculate coverage: 0.017 minutes\n", + "Filtering..\n", + "\tNumber of edits after filtering:\n", + "\t37\n", + "\tNumber of unique edit sites:\n", + "\t14\n", + "Writing sites...\n", + "\n", + "Adding strand-specific conversion...\n", + "\n", + "14 sites being converted to SAILOR format...\n", + "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", + "2 final deduplicated SAILOR-formatted sites\n", + "Making bedgraphs for ['CT'] conversions...\n", + "\n", + "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed...\n", + "Current memory usage 21.567791MB; Peak: 22.676446MB\n", + "Time elapsed: 3.26s\n", + "-------------------------------\n", + "Deleting intermediate files...\n", + "-------------------------------\n", + "++++++\n", + "Done!\n", + "++++++\n", + "F1R2_pair_test-single_end_mode\n", + "Removing old files...\n", + "Running tests...\n", + "Python is /tscc/nfs/home/ekofman/miniconda3/envs/marine_environment/bin/python\n", + "Assuming 16 cores available for multiprocessing. Set this to the number of available cores for optimal execution.\n", + "Arguments:\n", + "\tBAM filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/bams/F1R2_pair.bam\n", + "\tAnnotation bedfile filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed\n", + "\tOutput folder:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/F1R2_pair_test-single_end_mode\n", + "\tBarcode whitelist:\tNone\n", + "\tStrandedness:\t2\n", + "\tBarcode Tag:\tNone\n", + "\tPaired End:\tFalse\n", + "\tCoverage only:\tFalse\n", + "\tFiltering only:\tFalse\n", + "\tAnnotation only:\tFalse\n", + "\tSailor outputs:\tTrue\n", + "\tBedgraphs:\t[]\n", + "\tMinimum base quality:\t0\n", + "\tMinimum read quality:\t0\n", + "\tMinimum distance from end:\t0\n", + "\tMaximum edits per read:\tNone\n", + "\tContigs:\tchr17\n", + "\tNumber of intervals:\t16\n", + "\tCores:\t16\n", + "\tVerbose:\tTrue\n", + "\tKeep intermediate files:\tFalse\n", + "\tSkip coverage?:\tFalse\n", + "\n", + ":::: :::: ::: ::::::::: ::::::::::: :::: ::: :::::::::: \n", + "+:+:+: :+:+:+ :+: :+: :+: :+: :+: :+:+: :+: :+: \n", + "+:+ +:+:+ +:+ +:+ +:+ +:+ +:+ +:+ :+:+:+ +:+ +:+ \n", + "+#+ +:+ +#+ +#++:++#++: +#++:++#: +#+ +#+ +:+ +#+ +#++:++# \n", + "+#+ +#+ +#+ +#+ +#+ +#+ +#+ +#+ +#+#+# +#+ \n", + "#+# #+# #+# #+# #+# #+# #+# #+# #+#+# #+# \n", + "### ### ### ### ### ### ########### ### #### ########## \n", + "==================================================================\n", + "Multi-core Algorithm for Rapid Identification of Nucleotide Edits\n", + "==================================================================\n", + "~~~~~~~~~~~~~~~~~~\n", + "Identifying edits\n", + "~~~~~~~~~~~~~~~~~~\n", + "Each contig is being split into 16 subsets...\n", + "contig_lengths_dict:{'chr1': 248956422, 'chr2': 242193529, 'chr3': 198295559, 'chr4': 190214555, 'chr5': 181538259, 'chr6': 170805979, 'chr7': 159345973, 'chr8': 145138636, 'chr9': 138394717, 'chr10': 133797422, 'chr11': 135086622, 'chr12': 133275309, 'chr13': 114364328, 'chr14': 107043718, 'chr15': 101991189, 'chr16': 90338345, 'chr17': 83257441, 'chr18': 80373285, 'chr19': 58617616, 'chr20': 64444167, 'chr21': 46709983, 'chr22': 50818468, 'chrX': 156040895, 'chrY': 57227415, 'chrM': 16569, 'chr1_KI270706v1_random': 175055, 'chr1_KI270707v1_random': 32032, 'chr1_KI270708v1_random': 127682, 'chr1_KI270709v1_random': 66860, 'chr1_KI270710v1_random': 40176, 'chr1_KI270711v1_random': 42210, 'chr1_KI270712v1_random': 176043, 'chr1_KI270713v1_random': 40745, 'chr1_KI270714v1_random': 41717, 'chr2_KI270715v1_random': 161471, 'chr2_KI270716v1_random': 153799, 'chr3_GL000221v1_random': 155397, 'chr4_GL000008v2_random': 209709, 'chr5_GL000208v1_random': 92689, 'chr9_KI270717v1_random': 40062, 'chr9_KI270718v1_random': 38054, 'chr9_KI270719v1_random': 176845, 'chr9_KI270720v1_random': 39050, 'chr11_KI270721v1_random': 100316, 'chr14_GL000009v2_random': 201709, 'chr14_GL000225v1_random': 211173, 'chr14_KI270722v1_random': 194050, 'chr14_GL000194v1_random': 191469, 'chr14_KI270723v1_random': 38115, 'chr14_KI270724v1_random': 39555, 'chr14_KI270725v1_random': 172810, 'chr14_KI270726v1_random': 43739, 'chr15_KI270727v1_random': 448248, 'chr16_KI270728v1_random': 1872759, 'chr17_GL000205v2_random': 185591, 'chr17_KI270729v1_random': 280839, 'chr17_KI270730v1_random': 112551, 'chr22_KI270731v1_random': 150754, 'chr22_KI270732v1_random': 41543, 'chr22_KI270733v1_random': 179772, 'chr22_KI270734v1_random': 165050, 'chr22_KI270735v1_random': 42811, 'chr22_KI270736v1_random': 181920, 'chr22_KI270737v1_random': 103838, 'chr22_KI270738v1_random': 99375, 'chr22_KI270739v1_random': 73985, 'chrY_KI270740v1_random': 37240, 'chrUn_KI270302v1': 2274, 'chrUn_KI270304v1': 2165, 'chrUn_KI270303v1': 1942, 'chrUn_KI270305v1': 1472, 'chrUn_KI270322v1': 21476, 'chrUn_KI270320v1': 4416, 'chrUn_KI270310v1': 1201, 'chrUn_KI270316v1': 1444, 'chrUn_KI270315v1': 2276, 'chrUn_KI270312v1': 998, 'chrUn_KI270311v1': 12399, 'chrUn_KI270317v1': 37690, 'chrUn_KI270412v1': 1179, 'chrUn_KI270411v1': 2646, 'chrUn_KI270414v1': 2489, 'chrUn_KI270419v1': 1029, 'chrUn_KI270418v1': 2145, 'chrUn_KI270420v1': 2321, 'chrUn_KI270424v1': 2140, 'chrUn_KI270417v1': 2043, 'chrUn_KI270422v1': 1445, 'chrUn_KI270423v1': 981, 'chrUn_KI270425v1': 1884, 'chrUn_KI270429v1': 1361, 'chrUn_KI270442v1': 392061, 'chrUn_KI270466v1': 1233, 'chrUn_KI270465v1': 1774, 'chrUn_KI270467v1': 3920, 'chrUn_KI270435v1': 92983, 'chrUn_KI270438v1': 112505, 'chrUn_KI270468v1': 4055, 'chrUn_KI270510v1': 2415, 'chrUn_KI270509v1': 2318, 'chrUn_KI270518v1': 2186, 'chrUn_KI270508v1': 1951, 'chrUn_KI270516v1': 1300, 'chrUn_KI270512v1': 22689, 'chrUn_KI270519v1': 138126, 'chrUn_KI270522v1': 5674, 'chrUn_KI270511v1': 8127, 'chrUn_KI270515v1': 6361, 'chrUn_KI270507v1': 5353, 'chrUn_KI270517v1': 3253, 'chrUn_KI270529v1': 1899, 'chrUn_KI270528v1': 2983, 'chrUn_KI270530v1': 2168, 'chrUn_KI270539v1': 993, 'chrUn_KI270538v1': 91309, 'chrUn_KI270544v1': 1202, 'chrUn_KI270548v1': 1599, 'chrUn_KI270583v1': 1400, 'chrUn_KI270587v1': 2969, 'chrUn_KI270580v1': 1553, 'chrUn_KI270581v1': 7046, 'chrUn_KI270579v1': 31033, 'chrUn_KI270589v1': 44474, 'chrUn_KI270590v1': 4685, 'chrUn_KI270584v1': 4513, 'chrUn_KI270582v1': 6504, 'chrUn_KI270588v1': 6158, 'chrUn_KI270593v1': 3041, 'chrUn_KI270591v1': 5796, 'chrUn_KI270330v1': 1652, 'chrUn_KI270329v1': 1040, 'chrUn_KI270334v1': 1368, 'chrUn_KI270333v1': 2699, 'chrUn_KI270335v1': 1048, 'chrUn_KI270338v1': 1428, 'chrUn_KI270340v1': 1428, 'chrUn_KI270336v1': 1026, 'chrUn_KI270337v1': 1121, 'chrUn_KI270363v1': 1803, 'chrUn_KI270364v1': 2855, 'chrUn_KI270362v1': 3530, 'chrUn_KI270366v1': 8320, 'chrUn_KI270378v1': 1048, 'chrUn_KI270379v1': 1045, 'chrUn_KI270389v1': 1298, 'chrUn_KI270390v1': 2387, 'chrUn_KI270387v1': 1537, 'chrUn_KI270395v1': 1143, 'chrUn_KI270396v1': 1880, 'chrUn_KI270388v1': 1216, 'chrUn_KI270394v1': 970, 'chrUn_KI270386v1': 1788, 'chrUn_KI270391v1': 1484, 'chrUn_KI270383v1': 1750, 'chrUn_KI270393v1': 1308, 'chrUn_KI270384v1': 1658, 'chrUn_KI270392v1': 971, 'chrUn_KI270381v1': 1930, 'chrUn_KI270385v1': 990, 'chrUn_KI270382v1': 4215, 'chrUn_KI270376v1': 1136, 'chrUn_KI270374v1': 2656, 'chrUn_KI270372v1': 1650, 'chrUn_KI270373v1': 1451, 'chrUn_KI270375v1': 2378, 'chrUn_KI270371v1': 2805, 'chrUn_KI270448v1': 7992, 'chrUn_KI270521v1': 7642, 'chrUn_GL000195v1': 182896, 'chrUn_GL000219v1': 179198, 'chrUn_GL000220v1': 161802, 'chrUn_GL000224v1': 179693, 'chrUn_KI270741v1': 157432, 'chrUn_GL000226v1': 15008, 'chrUn_GL000213v1': 164239, 'chrUn_KI270743v1': 210658, 'chrUn_KI270744v1': 168472, 'chrUn_KI270745v1': 41891, 'chrUn_KI270746v1': 66486, 'chrUn_KI270747v1': 198735, 'chrUn_KI270748v1': 93321, 'chrUn_KI270749v1': 158759, 'chrUn_KI270750v1': 148850, 'chrUn_KI270751v1': 150742, 'chrUn_KI270752v1': 27745, 'chrUn_KI270753v1': 62944, 'chrUn_KI270754v1': 40191, 'chrUn_KI270755v1': 36723, 'chrUn_KI270756v1': 79590, 'chrUn_KI270757v1': 71251, 'chrUn_GL000214v1': 137718, 'chrUn_KI270742v1': 186739, 'chrUn_GL000216v2': 176608, 'chrUn_GL000218v1': 161147, 'chrEBV': 171823}\n", + "\tContig chr17\n", + "16 total jobs\n", + "chr17:000, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:001, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:002, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:003, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:005, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 26A20G52\n", + "CIGAR tag 1S100M\n", + "is_reverse False\n", + "is_read1 True\n", + "is_read2 False\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse True\n", + "read id VH01429:22:AACFJ5NHV:1:2211:40480:18323\n", + "VH01429:22:AACFJ5NHV:1:2211:40480:18323\t99\t#16\t43044305\t255\t1S100M\t#16\t43044312\t107\tGTGCTACCAAGTTTATTTGCAGTGTTACCAGCACAACATTTACAAAACATATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGA\tarray('B', [12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 26, 12, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34])\t[('MD', '26A20G52'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 2), ('AS', 190)]\n", + "reverse_or_forward: -\n", + "----------------------------\n", + "MD tag: 26A20G52\n", + "CIGAR string 1S100M\n", + "Reference seq: TGCTACCAAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACGTATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGA\n", + "Aligned seq: GTGCTACCAAGTTTATTTGCAGTGTTACCAGCACAACATTTACAAAACATATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGA\n", + "Qualities: array('B', [12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 26, 12, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(4, 1), (0, 100)]\n", + "Aligned sequence before clipping (if needed):\n", + " GTGCTACCAAGTTTATTTGCAGTGTTACCAGCACAACATTTACAAAACATATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGA\n", + "Qualities before clipping:\n", + " array('B', [12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 26, 12, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 100)]\n", + "Aligned sequence after clipping (if needed):\n", + " TGCTACCAAGTTTATTTGCAGTGTTACCAGCACAACATTTACAAAACATATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGA\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 26, 12, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['26', '20', '52']\n", + "[26, 47, 100]\n", + "Indicated reference seq:\n", + " tgctaccaagtttatttgcagtgttaAcagcacaacatttacaaaacGtattttgtacaatcaagtcttcactgcccttgcacactgggggggctaggga\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " tgctaccaagtttatttgcagtgttaAcagcacaacatttacaaaacGtattttgtacaatcaagtcttcactgcccttgcacactgggggggctaggga\n", + "Fixed aligned seq:\n", + " TGCTACCAAGTTTATTTGCAGTGTTACCAGCACAACATTTACAAAACATATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGA\n", + "Finalized fixed aligned seq:\n", + " tgctaccaagtttatttgcagtgttaCcagcacaacatttacaaaacAtattttgtacaatcaagtcttcactgcccttgcacactgggggggctaggga\n", + "Indicated qualities:\n", + " 34343434343434343434263434343434343434342634343434261234343434342626343434343434343434341234341234343434343434123434343434343412343434343412343434343434343434342634342634343426343426343434342634343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['C', 'A']\n", + "ref bases ['A', 'G']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['C', 'A'], ref bases: ['A', 'G']\n", + "Getting info: C A 12 27\n", + "Getting info: A G 12 48\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 40G3T55\n", + "CIGAR tag 100M1S\n", + "is_reverse True\n", + "is_read1 False\n", + "is_read2 True\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse False\n", + "read id VH01429:22:AACFJ5NHV:1:2211:40480:18323\n", + "VH01429:22:AACFJ5NHV:1:2211:40480:18323\t147\t#16\t43044312\t255\t100M1S\t#16\t43044305\t-107\tAAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACATATGTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGAAGACCTAC\tarray('B', [34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 12])\t[('MD', '40G3T55'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 2), ('AS', 190)]\n", + "reverse_or_forward: -\n", + "----------------------------\n", + "MD tag: 40G3T55\n", + "CIGAR string 100M1S\n", + "Reference seq: AAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACGTATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGAAGACCTA\n", + "Aligned seq: AAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACATATGTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGAAGACCTAC\n", + "Qualities: array('B', [34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 12])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(0, 100), (4, 1)]\n", + "Aligned sequence before clipping (if needed):\n", + " AAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACATATGTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGAAGACCTAC\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 12])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 100)]\n", + "Aligned sequence after clipping (if needed):\n", + " AAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACATATGTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGAAGACCTA\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['40', '3', '55']\n", + "[40, 44, 100]\n", + "Indicated reference seq:\n", + " aagtttatttgcagtgttaacagcacaacatttacaaaacGtatTttgtacaatcaagtcttcactgcccttgcacactgggggggctagggaagaccta\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " aagtttatttgcagtgttaacagcacaacatttacaaaacGtatTttgtacaatcaagtcttcactgcccttgcacactgggggggctagggaagaccta\n", + "Fixed aligned seq:\n", + " AAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACATATGTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGAAGACCTA\n", + "Finalized fixed aligned seq:\n", + " aagtttatttgcagtgttaacagcacaacatttacaaaacAtatGttgtacaatcaagtcttcactgcccttgcacactgggggggctagggaagaccta\n", + "Indicated qualities:\n", + " 34343434343434263434342634343434341234343434263434343434343434343434343426343434343434341234343434343434343434343434263412343434343434343434342634343434343434343434343434343426343434263434343434343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['A', 'G']\n", + "ref bases ['G', 'T']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['A', 'G'], ref bases: ['G', 'T']\n", + "Getting info: A G 34 41\n", + "Getting info: G T 12 45\n", + "chr17:008, total reads: 2, counts_df: chr17\n", + "edited 2\n", + "total_edits 4\n", + "chr17:007, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:012, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:015, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:013, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "Reads processed:\t2\n", + "Time to process reads in min:\t0.15093\n", + "Read Summary:\n", + "edited 2\n", + "total_edits 4\n", + "dtype: int64\n", + "\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Calculating coverage at edited sites, minimum read quality is 0...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "\tsplit chr17_000_0_5203591, 0/16...\n", + "\tsplit chr17_010_52035910_57239501, 10/16...\n", + "Done grouping! Concatenating ...\n", + "Done concatenating!\n", + "edit_info_grouped_per_contig_combined dict_keys(['chr17_000_0_5203591', 'chr17_001_5203591_10407182', 'chr17_002_10407182_15610773', 'chr17_003_15610773_20814364', 'chr17_004_20814364_26017955', 'chr17_005_26017955_31221546', 'chr17_006_31221546_36425137', 'chr17_007_36425137_41628728', 'chr17_008_41628728_46832319', 'chr17_009_46832319_52035910', 'chr17_010_52035910_57239501', 'chr17_011_57239501_62443092', 'chr17_012_62443092_67646683', 'chr17_013_67646683_72850274', 'chr17_014_72850274_78053865', 'chr17_015_78053865_83257456'])\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|██████████| 16/16 [00:08<00:00, 1.83it/s]\n", + "100%|██████████| 16/16 [00:08<00:00, 1.89it/s]\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Concatenating results...\n", + "Done concatenating.\n", + "original 4\n", + "filtered 3\n", + "dtype: int64\n", + "Total time to calculate coverage: 0.145 minutes\n", + "Filtering..\n", + "\tNumber of edits after filtering:\n", + "\t3\n", + "\tNumber of unique edit sites:\n", + "\t3\n", + "Writing sites...\n", + "\n", + "Adding strand-specific conversion...\n", + "\n", + "3 sites being converted to SAILOR format...\n", + "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", + "1 final deduplicated SAILOR-formatted sites\n", + "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed...\n", + "Current memory usage 21.288258MB; Peak: 22.400914MB\n", + "Time elapsed: 18.62s\n", + "-------------------------------\n", + "Deleting intermediate files...\n", + "-------------------------------\n", + "++++++\n", + "Done!\n", + "++++++\n", + "F1R2_pair_test\n", + "Removing old files...\n", + "Running tests...\n", + "Assuming 16 cores available for multiprocessing. Set this to the number of available cores for optimal execution.\n", + "Arguments:\n", + "\tBAM filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/bams/F1R2_pair.bam\n", + "\tAnnotation bedfile filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed\n", + "\tOutput folder:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/F1R2_pair_test\n", + "\tBarcode whitelist:\tNone\n", + "\tStrandedness:\t2\n", + "\tBarcode Tag:\tNone\n", + "\tPaired End:\tTrue\n", + "\tCoverage only:\tFalse\n", + "\tFiltering only:\tFalse\n", + "\tAnnotation only:\tFalse\n", + "\tSailor outputs:\tTrue\n", + "\tBedgraphs:\t[]\n", + "\tMinimum base quality:\t0\n", + "\tMinimum read quality:\t0\n", + "\tMinimum distance from end:\t0\n", + "\tMaximum edits per read:\tNone\n", + "\tContigs:\tchr17\n", + "\tNumber of intervals:\t16\n", + "\tCores:\t16\n", + "\tVerbose:\tTrue\n", + "\tKeep intermediate files:\tFalse\n", + "\tSkip coverage?:\tFalse\n", + "\n", + ":::: :::: ::: ::::::::: ::::::::::: :::: ::: :::::::::: \n", + "+:+:+: :+:+:+ :+: :+: :+: :+: :+: :+:+: :+: :+: \n", + "+:+ +:+:+ +:+ +:+ +:+ +:+ +:+ +:+ :+:+:+ +:+ +:+ \n", + "+#+ +:+ +#+ +#++:++#++: +#++:++#: +#+ +#+ +:+ +#+ +#++:++# \n", + "+#+ +#+ +#+ +#+ +#+ +#+ +#+ +#+ +#+#+# +#+ \n", + "#+# #+# #+# #+# #+# #+# #+# #+# #+#+# #+# \n", + "### ### ### ### ### ### ########### ### #### ########## \n", + "==================================================================\n", + "Multi-core Algorithm for Rapid Identification of Nucleotide Edits\n", + "==================================================================\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", + "WARNING /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/F1R2_pair_test is not empty\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", + "~~~~~~~~~~~~~~~~~~\n", + "Identifying edits\n", + "~~~~~~~~~~~~~~~~~~\n", + "Each contig is being split into 16 subsets...\n", + "contig_lengths_dict:{'chr1': 248956422, 'chr2': 242193529, 'chr3': 198295559, 'chr4': 190214555, 'chr5': 181538259, 'chr6': 170805979, 'chr7': 159345973, 'chr8': 145138636, 'chr9': 138394717, 'chr10': 133797422, 'chr11': 135086622, 'chr12': 133275309, 'chr13': 114364328, 'chr14': 107043718, 'chr15': 101991189, 'chr16': 90338345, 'chr17': 83257441, 'chr18': 80373285, 'chr19': 58617616, 'chr20': 64444167, 'chr21': 46709983, 'chr22': 50818468, 'chrX': 156040895, 'chrY': 57227415, 'chrM': 16569, 'chr1_KI270706v1_random': 175055, 'chr1_KI270707v1_random': 32032, 'chr1_KI270708v1_random': 127682, 'chr1_KI270709v1_random': 66860, 'chr1_KI270710v1_random': 40176, 'chr1_KI270711v1_random': 42210, 'chr1_KI270712v1_random': 176043, 'chr1_KI270713v1_random': 40745, 'chr1_KI270714v1_random': 41717, 'chr2_KI270715v1_random': 161471, 'chr2_KI270716v1_random': 153799, 'chr3_GL000221v1_random': 155397, 'chr4_GL000008v2_random': 209709, 'chr5_GL000208v1_random': 92689, 'chr9_KI270717v1_random': 40062, 'chr9_KI270718v1_random': 38054, 'chr9_KI270719v1_random': 176845, 'chr9_KI270720v1_random': 39050, 'chr11_KI270721v1_random': 100316, 'chr14_GL000009v2_random': 201709, 'chr14_GL000225v1_random': 211173, 'chr14_KI270722v1_random': 194050, 'chr14_GL000194v1_random': 191469, 'chr14_KI270723v1_random': 38115, 'chr14_KI270724v1_random': 39555, 'chr14_KI270725v1_random': 172810, 'chr14_KI270726v1_random': 43739, 'chr15_KI270727v1_random': 448248, 'chr16_KI270728v1_random': 1872759, 'chr17_GL000205v2_random': 185591, 'chr17_KI270729v1_random': 280839, 'chr17_KI270730v1_random': 112551, 'chr22_KI270731v1_random': 150754, 'chr22_KI270732v1_random': 41543, 'chr22_KI270733v1_random': 179772, 'chr22_KI270734v1_random': 165050, 'chr22_KI270735v1_random': 42811, 'chr22_KI270736v1_random': 181920, 'chr22_KI270737v1_random': 103838, 'chr22_KI270738v1_random': 99375, 'chr22_KI270739v1_random': 73985, 'chrY_KI270740v1_random': 37240, 'chrUn_KI270302v1': 2274, 'chrUn_KI270304v1': 2165, 'chrUn_KI270303v1': 1942, 'chrUn_KI270305v1': 1472, 'chrUn_KI270322v1': 21476, 'chrUn_KI270320v1': 4416, 'chrUn_KI270310v1': 1201, 'chrUn_KI270316v1': 1444, 'chrUn_KI270315v1': 2276, 'chrUn_KI270312v1': 998, 'chrUn_KI270311v1': 12399, 'chrUn_KI270317v1': 37690, 'chrUn_KI270412v1': 1179, 'chrUn_KI270411v1': 2646, 'chrUn_KI270414v1': 2489, 'chrUn_KI270419v1': 1029, 'chrUn_KI270418v1': 2145, 'chrUn_KI270420v1': 2321, 'chrUn_KI270424v1': 2140, 'chrUn_KI270417v1': 2043, 'chrUn_KI270422v1': 1445, 'chrUn_KI270423v1': 981, 'chrUn_KI270425v1': 1884, 'chrUn_KI270429v1': 1361, 'chrUn_KI270442v1': 392061, 'chrUn_KI270466v1': 1233, 'chrUn_KI270465v1': 1774, 'chrUn_KI270467v1': 3920, 'chrUn_KI270435v1': 92983, 'chrUn_KI270438v1': 112505, 'chrUn_KI270468v1': 4055, 'chrUn_KI270510v1': 2415, 'chrUn_KI270509v1': 2318, 'chrUn_KI270518v1': 2186, 'chrUn_KI270508v1': 1951, 'chrUn_KI270516v1': 1300, 'chrUn_KI270512v1': 22689, 'chrUn_KI270519v1': 138126, 'chrUn_KI270522v1': 5674, 'chrUn_KI270511v1': 8127, 'chrUn_KI270515v1': 6361, 'chrUn_KI270507v1': 5353, 'chrUn_KI270517v1': 3253, 'chrUn_KI270529v1': 1899, 'chrUn_KI270528v1': 2983, 'chrUn_KI270530v1': 2168, 'chrUn_KI270539v1': 993, 'chrUn_KI270538v1': 91309, 'chrUn_KI270544v1': 1202, 'chrUn_KI270548v1': 1599, 'chrUn_KI270583v1': 1400, 'chrUn_KI270587v1': 2969, 'chrUn_KI270580v1': 1553, 'chrUn_KI270581v1': 7046, 'chrUn_KI270579v1': 31033, 'chrUn_KI270589v1': 44474, 'chrUn_KI270590v1': 4685, 'chrUn_KI270584v1': 4513, 'chrUn_KI270582v1': 6504, 'chrUn_KI270588v1': 6158, 'chrUn_KI270593v1': 3041, 'chrUn_KI270591v1': 5796, 'chrUn_KI270330v1': 1652, 'chrUn_KI270329v1': 1040, 'chrUn_KI270334v1': 1368, 'chrUn_KI270333v1': 2699, 'chrUn_KI270335v1': 1048, 'chrUn_KI270338v1': 1428, 'chrUn_KI270340v1': 1428, 'chrUn_KI270336v1': 1026, 'chrUn_KI270337v1': 1121, 'chrUn_KI270363v1': 1803, 'chrUn_KI270364v1': 2855, 'chrUn_KI270362v1': 3530, 'chrUn_KI270366v1': 8320, 'chrUn_KI270378v1': 1048, 'chrUn_KI270379v1': 1045, 'chrUn_KI270389v1': 1298, 'chrUn_KI270390v1': 2387, 'chrUn_KI270387v1': 1537, 'chrUn_KI270395v1': 1143, 'chrUn_KI270396v1': 1880, 'chrUn_KI270388v1': 1216, 'chrUn_KI270394v1': 970, 'chrUn_KI270386v1': 1788, 'chrUn_KI270391v1': 1484, 'chrUn_KI270383v1': 1750, 'chrUn_KI270393v1': 1308, 'chrUn_KI270384v1': 1658, 'chrUn_KI270392v1': 971, 'chrUn_KI270381v1': 1930, 'chrUn_KI270385v1': 990, 'chrUn_KI270382v1': 4215, 'chrUn_KI270376v1': 1136, 'chrUn_KI270374v1': 2656, 'chrUn_KI270372v1': 1650, 'chrUn_KI270373v1': 1451, 'chrUn_KI270375v1': 2378, 'chrUn_KI270371v1': 2805, 'chrUn_KI270448v1': 7992, 'chrUn_KI270521v1': 7642, 'chrUn_GL000195v1': 182896, 'chrUn_GL000219v1': 179198, 'chrUn_GL000220v1': 161802, 'chrUn_GL000224v1': 179693, 'chrUn_KI270741v1': 157432, 'chrUn_GL000226v1': 15008, 'chrUn_GL000213v1': 164239, 'chrUn_KI270743v1': 210658, 'chrUn_KI270744v1': 168472, 'chrUn_KI270745v1': 41891, 'chrUn_KI270746v1': 66486, 'chrUn_KI270747v1': 198735, 'chrUn_KI270748v1': 93321, 'chrUn_KI270749v1': 158759, 'chrUn_KI270750v1': 148850, 'chrUn_KI270751v1': 150742, 'chrUn_KI270752v1': 27745, 'chrUn_KI270753v1': 62944, 'chrUn_KI270754v1': 40191, 'chrUn_KI270755v1': 36723, 'chrUn_KI270756v1': 79590, 'chrUn_KI270757v1': 71251, 'chrUn_GL000214v1': 137718, 'chrUn_KI270742v1': 186739, 'chrUn_GL000216v2': 176608, 'chrUn_GL000218v1': 161147, 'chrEBV': 171823}\n", + "\tContig chr17\n", + "16 total jobs\n", + "chr17:000, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:001, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:002, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:003, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:005, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:007, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 26A20G52\n", + "CIGAR tag 1S100M\n", + "is_reverse False\n", + "is_read1 True\n", + "is_read2 False\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse True\n", + "read id VH01429:22:AACFJ5NHV:1:2211:40480:18323\n", + "VH01429:22:AACFJ5NHV:1:2211:40480:18323\t99\t#16\t43044305\t255\t1S100M\t#16\t43044312\t107\tGTGCTACCAAGTTTATTTGCAGTGTTACCAGCACAACATTTACAAAACATATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGA\tarray('B', [12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 26, 12, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34])\t[('MD', '26A20G52'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 2), ('AS', 190)]\n", + "reverse_or_forward: -\n", + "----------------------------\n", + "MD tag: 26A20G52\n", + "CIGAR string 1S100M\n", + "Reference seq: TGCTACCAAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACGTATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGA\n", + "Aligned seq: GTGCTACCAAGTTTATTTGCAGTGTTACCAGCACAACATTTACAAAACATATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGA\n", + "Qualities: array('B', [12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 26, 12, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(4, 1), (0, 100)]\n", + "Aligned sequence before clipping (if needed):\n", + " GTGCTACCAAGTTTATTTGCAGTGTTACCAGCACAACATTTACAAAACATATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGA\n", + "Qualities before clipping:\n", + " array('B', [12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 26, 12, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 100)]\n", + "Aligned sequence after clipping (if needed):\n", + " TGCTACCAAGTTTATTTGCAGTGTTACCAGCACAACATTTACAAAACATATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGA\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 26, 12, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['26', '20', '52']\n", + "[26, 47, 100]\n", + "Indicated reference seq:\n", + " tgctaccaagtttatttgcagtgttaAcagcacaacatttacaaaacGtattttgtacaatcaagtcttcactgcccttgcacactgggggggctaggga\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " tgctaccaagtttatttgcagtgttaAcagcacaacatttacaaaacGtattttgtacaatcaagtcttcactgcccttgcacactgggggggctaggga\n", + "Fixed aligned seq:\n", + " TGCTACCAAGTTTATTTGCAGTGTTACCAGCACAACATTTACAAAACATATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGA\n", + "Finalized fixed aligned seq:\n", + " tgctaccaagtttatttgcagtgttaCcagcacaacatttacaaaacAtattttgtacaatcaagtcttcactgcccttgcacactgggggggctaggga\n", + "Indicated qualities:\n", + " 34343434343434343434263434343434343434342634343434261234343434342626343434343434343434341234341234343434343434123434343434343412343434343412343434343434343434342634342634343426343426343434342634343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['C', 'A']\n", + "ref bases ['A', 'G']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['C', 'A'], ref bases: ['A', 'G']\n", + "Getting info: C A 12 27\n", + "Getting info: A G 12 48\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 40G3T55\n", + "CIGAR tag 100M1S\n", + "is_reverse True\n", + "is_read1 False\n", + "is_read2 True\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse False\n", + "read id VH01429:22:AACFJ5NHV:1:2211:40480:18323\n", + "VH01429:22:AACFJ5NHV:1:2211:40480:18323\t147\t#16\t43044312\t255\t100M1S\t#16\t43044305\t-107\tAAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACATATGTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGAAGACCTAC\tarray('B', [34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 12])\t[('MD', '40G3T55'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 2), ('AS', 190)]\n", + "reverse_or_forward: -\n", + "----------------------------\n", + "MD tag: 40G3T55\n", + "CIGAR string 100M1S\n", + "Reference seq: AAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACGTATTTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGAAGACCTA\n", + "Aligned seq: AAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACATATGTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGAAGACCTAC\n", + "Qualities: array('B', [34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 12])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(0, 100), (4, 1)]\n", + "Aligned sequence before clipping (if needed):\n", + " AAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACATATGTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGAAGACCTAC\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 12])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 100)]\n", + "Aligned sequence after clipping (if needed):\n", + " AAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACATATGTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGAAGACCTA\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['40', '3', '55']\n", + "[40, 44, 100]\n", + "Indicated reference seq:\n", + " aagtttatttgcagtgttaacagcacaacatttacaaaacGtatTttgtacaatcaagtcttcactgcccttgcacactgggggggctagggaagaccta\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " aagtttatttgcagtgttaacagcacaacatttacaaaacGtatTttgtacaatcaagtcttcactgcccttgcacactgggggggctagggaagaccta\n", + "Fixed aligned seq:\n", + " AAGTTTATTTGCAGTGTTAACAGCACAACATTTACAAAACATATGTTGTACAATCAAGTCTTCACTGCCCTTGCACACTGGGGGGGCTAGGGAAGACCTA\n", + "Finalized fixed aligned seq:\n", + " aagtttatttgcagtgttaacagcacaacatttacaaaacAtatGttgtacaatcaagtcttcactgcccttgcacactgggggggctagggaagaccta\n", + "Indicated qualities:\n", + " 34343434343434263434342634343434341234343434263434343434343434343434343426343434343434341234343434343434343434343434263412343434343434343434342634343434343434343434343434343426343434263434343434343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['A', 'G']\n", + "ref bases ['G', 'T']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['A', 'G'], ref bases: ['G', 'T']\n", + "Getting info: A G 34 41\n", + "Getting info: G T 12 45\n", + "chr17:008, total reads: 2, counts_df: chr17\n", + "edited 2\n", + "total_edits 4\n", + "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:013, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:012, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:015, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:014, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "Reads processed:\t2\n", + "Time to process reads in min:\t0.15098\n", + "Read Summary:\n", + "edited 2\n", + "total_edits 4\n", + "dtype: int64\n", + "\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Calculating coverage at edited sites, minimum read quality is 0...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "\tsplit chr17_000_0_5203591, 0/16...\n", + "\tsplit chr17_010_52035910_57239501, 10/16...\n", + "Done grouping! Concatenating ...\n", + "Done concatenating!\n", + "edit_info_grouped_per_contig_combined dict_keys(['chr17_000_0_5203591', 'chr17_001_5203591_10407182', 'chr17_002_10407182_15610773', 'chr17_003_15610773_20814364', 'chr17_004_20814364_26017955', 'chr17_005_26017955_31221546', 'chr17_006_31221546_36425137', 'chr17_007_36425137_41628728', 'chr17_008_41628728_46832319', 'chr17_009_46832319_52035910', 'chr17_010_52035910_57239501', 'chr17_011_57239501_62443092', 'chr17_012_62443092_67646683', 'chr17_013_67646683_72850274', 'chr17_014_72850274_78053865', 'chr17_015_78053865_83257456'])\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|██████████| 16/16 [00:08<00:00, 1.83it/s]\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/F1R2_pair_test/split_bams/chr17/chr17_008_41628728_46832319.bam.sorted.bam\n", + " chr17:43044352~~~~~~~`\n", + "coverage_at_pos 1\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/F1R2_pair_test/split_bams/chr17/chr17_008_41628728_46832319.bam.sorted.bam\n", + " chr17:43044331~~~~~~~`\n", + "coverage_at_pos 1\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/F1R2_pair_test/split_bams/chr17/chr17_008_41628728_46832319.bam.sorted.bam\n", + " chr17:43044356~~~~~~~`\n", + "coverage_at_pos 1\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|██████████| 16/16 [00:06<00:00, 2.39it/s]\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Concatenating results...\n", + "Done concatenating.\n", + "original 4\n", + "filtered 3\n", + "dtype: int64\n", + "Total time to calculate coverage: 0.116 minutes\n", + "Filtering..\n", + "\tNumber of edits after filtering:\n", + "\t3\n", + "\tNumber of unique edit sites:\n", + "\t3\n", + "Writing sites...\n", + "\n", + "Adding strand-specific conversion...\n", + "\n", + "3 sites being converted to SAILOR format...\n", + "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", + "1 final deduplicated SAILOR-formatted sites\n", + "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed...\n", + "Current memory usage 21.289436MB; Peak: 22.402017MB\n", + "Time elapsed: 16.87s\n", + "-------------------------------\n", + "Deleting intermediate files...\n", + "-------------------------------\n", + "++++++\n", + "Done!\n", + "++++++\n", + "F2R1_end_second_in_pair_test\n", + "Removing old files...\n", + "Running tests...\n", + "Assuming 16 cores available for multiprocessing. Set this to the number of available cores for optimal execution.\n", + "Arguments:\n", + "\tBAM filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/bams/F2R1_end_second_in_pair.bam\n", + "\tAnnotation bedfile filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed\n", + "\tOutput folder:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/F2R1_end_second_in_pair_test\n", + "\tBarcode whitelist:\tNone\n", + "\tStrandedness:\t2\n", + "\tBarcode Tag:\tNone\n", + "\tPaired End:\tTrue\n", + "\tCoverage only:\tFalse\n", + "\tFiltering only:\tFalse\n", + "\tAnnotation only:\tFalse\n", + "\tSailor outputs:\tTrue\n", + "\tBedgraphs:\t[]\n", + "\tMinimum base quality:\t0\n", + "\tMinimum read quality:\t0\n", + "\tMinimum distance from end:\t0\n", + "\tMaximum edits per read:\tNone\n", + "\tContigs:\tchr17\n", + "\tNumber of intervals:\t16\n", + "\tCores:\t16\n", + "\tVerbose:\tTrue\n", + "\tKeep intermediate files:\tFalse\n", + "\tSkip coverage?:\tFalse\n", + "\n", + ":::: :::: ::: ::::::::: ::::::::::: :::: ::: :::::::::: \n", + "+:+:+: :+:+:+ :+: :+: :+: :+: :+: :+:+: :+: :+: \n", + "+:+ +:+:+ +:+ +:+ +:+ +:+ +:+ +:+ :+:+:+ +:+ +:+ \n", + "+#+ +:+ +#+ +#++:++#++: +#++:++#: +#+ +#+ +:+ +#+ +#++:++# \n", + "+#+ +#+ +#+ +#+ +#+ +#+ +#+ +#+ +#+#+# +#+ \n", + "#+# #+# #+# #+# #+# #+# #+# #+# #+#+# #+# \n", + "### ### ### ### ### ### ########### ### #### ########## \n", + "==================================================================\n", + "Multi-core Algorithm for Rapid Identification of Nucleotide Edits\n", + "==================================================================\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", + "WARNING /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/F2R1_end_second_in_pair_test is not empty\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", + "~~~~~~~~~~~~~~~~~~\n", + "Identifying edits\n", + "~~~~~~~~~~~~~~~~~~\n", + "Each contig is being split into 16 subsets...\n", + "contig_lengths_dict:{'chr1': 248956422, 'chr2': 242193529, 'chr3': 198295559, 'chr4': 190214555, 'chr5': 181538259, 'chr6': 170805979, 'chr7': 159345973, 'chr8': 145138636, 'chr9': 138394717, 'chr10': 133797422, 'chr11': 135086622, 'chr12': 133275309, 'chr13': 114364328, 'chr14': 107043718, 'chr15': 101991189, 'chr16': 90338345, 'chr17': 83257441, 'chr18': 80373285, 'chr19': 58617616, 'chr20': 64444167, 'chr21': 46709983, 'chr22': 50818468, 'chrX': 156040895, 'chrY': 57227415, 'chrM': 16569, 'chr1_KI270706v1_random': 175055, 'chr1_KI270707v1_random': 32032, 'chr1_KI270708v1_random': 127682, 'chr1_KI270709v1_random': 66860, 'chr1_KI270710v1_random': 40176, 'chr1_KI270711v1_random': 42210, 'chr1_KI270712v1_random': 176043, 'chr1_KI270713v1_random': 40745, 'chr1_KI270714v1_random': 41717, 'chr2_KI270715v1_random': 161471, 'chr2_KI270716v1_random': 153799, 'chr3_GL000221v1_random': 155397, 'chr4_GL000008v2_random': 209709, 'chr5_GL000208v1_random': 92689, 'chr9_KI270717v1_random': 40062, 'chr9_KI270718v1_random': 38054, 'chr9_KI270719v1_random': 176845, 'chr9_KI270720v1_random': 39050, 'chr11_KI270721v1_random': 100316, 'chr14_GL000009v2_random': 201709, 'chr14_GL000225v1_random': 211173, 'chr14_KI270722v1_random': 194050, 'chr14_GL000194v1_random': 191469, 'chr14_KI270723v1_random': 38115, 'chr14_KI270724v1_random': 39555, 'chr14_KI270725v1_random': 172810, 'chr14_KI270726v1_random': 43739, 'chr15_KI270727v1_random': 448248, 'chr16_KI270728v1_random': 1872759, 'chr17_GL000205v2_random': 185591, 'chr17_KI270729v1_random': 280839, 'chr17_KI270730v1_random': 112551, 'chr22_KI270731v1_random': 150754, 'chr22_KI270732v1_random': 41543, 'chr22_KI270733v1_random': 179772, 'chr22_KI270734v1_random': 165050, 'chr22_KI270735v1_random': 42811, 'chr22_KI270736v1_random': 181920, 'chr22_KI270737v1_random': 103838, 'chr22_KI270738v1_random': 99375, 'chr22_KI270739v1_random': 73985, 'chrY_KI270740v1_random': 37240, 'chrUn_KI270302v1': 2274, 'chrUn_KI270304v1': 2165, 'chrUn_KI270303v1': 1942, 'chrUn_KI270305v1': 1472, 'chrUn_KI270322v1': 21476, 'chrUn_KI270320v1': 4416, 'chrUn_KI270310v1': 1201, 'chrUn_KI270316v1': 1444, 'chrUn_KI270315v1': 2276, 'chrUn_KI270312v1': 998, 'chrUn_KI270311v1': 12399, 'chrUn_KI270317v1': 37690, 'chrUn_KI270412v1': 1179, 'chrUn_KI270411v1': 2646, 'chrUn_KI270414v1': 2489, 'chrUn_KI270419v1': 1029, 'chrUn_KI270418v1': 2145, 'chrUn_KI270420v1': 2321, 'chrUn_KI270424v1': 2140, 'chrUn_KI270417v1': 2043, 'chrUn_KI270422v1': 1445, 'chrUn_KI270423v1': 981, 'chrUn_KI270425v1': 1884, 'chrUn_KI270429v1': 1361, 'chrUn_KI270442v1': 392061, 'chrUn_KI270466v1': 1233, 'chrUn_KI270465v1': 1774, 'chrUn_KI270467v1': 3920, 'chrUn_KI270435v1': 92983, 'chrUn_KI270438v1': 112505, 'chrUn_KI270468v1': 4055, 'chrUn_KI270510v1': 2415, 'chrUn_KI270509v1': 2318, 'chrUn_KI270518v1': 2186, 'chrUn_KI270508v1': 1951, 'chrUn_KI270516v1': 1300, 'chrUn_KI270512v1': 22689, 'chrUn_KI270519v1': 138126, 'chrUn_KI270522v1': 5674, 'chrUn_KI270511v1': 8127, 'chrUn_KI270515v1': 6361, 'chrUn_KI270507v1': 5353, 'chrUn_KI270517v1': 3253, 'chrUn_KI270529v1': 1899, 'chrUn_KI270528v1': 2983, 'chrUn_KI270530v1': 2168, 'chrUn_KI270539v1': 993, 'chrUn_KI270538v1': 91309, 'chrUn_KI270544v1': 1202, 'chrUn_KI270548v1': 1599, 'chrUn_KI270583v1': 1400, 'chrUn_KI270587v1': 2969, 'chrUn_KI270580v1': 1553, 'chrUn_KI270581v1': 7046, 'chrUn_KI270579v1': 31033, 'chrUn_KI270589v1': 44474, 'chrUn_KI270590v1': 4685, 'chrUn_KI270584v1': 4513, 'chrUn_KI270582v1': 6504, 'chrUn_KI270588v1': 6158, 'chrUn_KI270593v1': 3041, 'chrUn_KI270591v1': 5796, 'chrUn_KI270330v1': 1652, 'chrUn_KI270329v1': 1040, 'chrUn_KI270334v1': 1368, 'chrUn_KI270333v1': 2699, 'chrUn_KI270335v1': 1048, 'chrUn_KI270338v1': 1428, 'chrUn_KI270340v1': 1428, 'chrUn_KI270336v1': 1026, 'chrUn_KI270337v1': 1121, 'chrUn_KI270363v1': 1803, 'chrUn_KI270364v1': 2855, 'chrUn_KI270362v1': 3530, 'chrUn_KI270366v1': 8320, 'chrUn_KI270378v1': 1048, 'chrUn_KI270379v1': 1045, 'chrUn_KI270389v1': 1298, 'chrUn_KI270390v1': 2387, 'chrUn_KI270387v1': 1537, 'chrUn_KI270395v1': 1143, 'chrUn_KI270396v1': 1880, 'chrUn_KI270388v1': 1216, 'chrUn_KI270394v1': 970, 'chrUn_KI270386v1': 1788, 'chrUn_KI270391v1': 1484, 'chrUn_KI270383v1': 1750, 'chrUn_KI270393v1': 1308, 'chrUn_KI270384v1': 1658, 'chrUn_KI270392v1': 971, 'chrUn_KI270381v1': 1930, 'chrUn_KI270385v1': 990, 'chrUn_KI270382v1': 4215, 'chrUn_KI270376v1': 1136, 'chrUn_KI270374v1': 2656, 'chrUn_KI270372v1': 1650, 'chrUn_KI270373v1': 1451, 'chrUn_KI270375v1': 2378, 'chrUn_KI270371v1': 2805, 'chrUn_KI270448v1': 7992, 'chrUn_KI270521v1': 7642, 'chrUn_GL000195v1': 182896, 'chrUn_GL000219v1': 179198, 'chrUn_GL000220v1': 161802, 'chrUn_GL000224v1': 179693, 'chrUn_KI270741v1': 157432, 'chrUn_GL000226v1': 15008, 'chrUn_GL000213v1': 164239, 'chrUn_KI270743v1': 210658, 'chrUn_KI270744v1': 168472, 'chrUn_KI270745v1': 41891, 'chrUn_KI270746v1': 66486, 'chrUn_KI270747v1': 198735, 'chrUn_KI270748v1': 93321, 'chrUn_KI270749v1': 158759, 'chrUn_KI270750v1': 148850, 'chrUn_KI270751v1': 150742, 'chrUn_KI270752v1': 27745, 'chrUn_KI270753v1': 62944, 'chrUn_KI270754v1': 40191, 'chrUn_KI270755v1': 36723, 'chrUn_KI270756v1': 79590, 'chrUn_KI270757v1': 71251, 'chrUn_GL000214v1': 137718, 'chrUn_KI270742v1': 186739, 'chrUn_GL000216v2': 176608, 'chrUn_GL000218v1': 161147, 'chrEBV': 171823}\n", + "\tContig chr17\n", + "16 total jobs\n", + "chr17:000, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:001, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:002, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:003, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:005, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:007, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:013, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:015, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:012, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:014, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "Reads processed:\t1\n", + "Time to process reads in min:\t0.15103\n", + "Read Summary:\n", + "edited 1\n", + "total_edits 3\n", + "dtype: int64\n", + "\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Calculating coverage at edited sites, minimum read quality is 0...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "\tsplit chr17_000_0_5203591, 0/16...\n", + "\tsplit chr17_010_52035910_57239501, 10/16...\n", + "Done grouping! Concatenating ...\n", + "Done concatenating!\n", + "edit_info_grouped_per_contig_combined dict_keys(['chr17_000_0_5203591', 'chr17_001_5203591_10407182', 'chr17_002_10407182_15610773', 'chr17_003_15610773_20814364', 'chr17_004_20814364_26017955', 'chr17_005_26017955_31221546', 'chr17_006_31221546_36425137', 'chr17_007_36425137_41628728', 'chr17_008_41628728_46832319', 'chr17_009_46832319_52035910', 'chr17_010_52035910_57239501', 'chr17_011_57239501_62443092', 'chr17_012_62443092_67646683', 'chr17_013_67646683_72850274', 'chr17_014_72850274_78053865', 'chr17_015_78053865_83257456'])\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|██████████| 16/16 [00:08<00:00, 1.82it/s]\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/F2R1_end_second_in_pair_test/split_bams/chr17/chr17_008_41628728_46832319.bam.sorted.bam\n", + " chr17:43001715~~~~~~~`\n", + "coverage_at_pos 1\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/F2R1_end_second_in_pair_test/split_bams/chr17/chr17_008_41628728_46832319.bam.sorted.bam\n", + " chr17:43001716~~~~~~~`\n", + "coverage_at_pos 1\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/F2R1_end_second_in_pair_test/split_bams/chr17/chr17_008_41628728_46832319.bam.sorted.bam\n", + " chr17:43001717~~~~~~~`\n", + "coverage_at_pos 1\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|██████████| 16/16 [00:08<00:00, 1.90it/s]\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Concatenating results...\n", + "Done concatenating.\n", + "original 3\n", + "filtered 3\n", + "dtype: int64\n", + "Total time to calculate coverage: 0.146 minutes\n", + "Filtering..\n", + "\tNumber of edits after filtering:\n", + "\t3\n", + "\tNumber of unique edit sites:\n", + "\t3\n", + "Writing sites...\n", + "\n", + "Adding strand-specific conversion...\n", + "\n", + "3 sites being converted to SAILOR format...\n", + "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", + "0 final deduplicated SAILOR-formatted sites\n", + "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed...\n", + "Current memory usage 21.436974MB; Peak: 22.547439MB\n", + "Time elapsed: 18.59s\n", + "-------------------------------\n", + "Deleting intermediate files...\n", + "-------------------------------\n", + "++++++\n", + "Done!\n", + "++++++\n", + "same_pos_dif_reads_test\n", + "Removing old files...\n", + "Running tests...\n", + "Assuming 16 cores available for multiprocessing. Set this to the number of available cores for optimal execution.\n", + "Arguments:\n", + "\tBAM filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/bams/same_pos_dif_reads.bam\n", + "\tAnnotation bedfile filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed\n", + "\tOutput folder:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/same_pos_dif_reads_test\n", + "\tBarcode whitelist:\tNone\n", + "\tStrandedness:\t2\n", + "\tBarcode Tag:\tNone\n", + "\tPaired End:\tTrue\n", + "\tCoverage only:\tFalse\n", + "\tFiltering only:\tFalse\n", + "\tAnnotation only:\tFalse\n", + "\tSailor outputs:\tTrue\n", + "\tBedgraphs:\t[]\n", + "\tMinimum base quality:\t0\n", + "\tMinimum read quality:\t0\n", + "\tMinimum distance from end:\t0\n", + "\tMaximum edits per read:\tNone\n", + "\tContigs:\tchr17\n", + "\tNumber of intervals:\t16\n", + "\tCores:\t16\n", + "\tVerbose:\tTrue\n", + "\tKeep intermediate files:\tFalse\n", + "\tSkip coverage?:\tFalse\n", + "\n", + ":::: :::: ::: ::::::::: ::::::::::: :::: ::: :::::::::: \n", + "+:+:+: :+:+:+ :+: :+: :+: :+: :+: :+:+: :+: :+: \n", + "+:+ +:+:+ +:+ +:+ +:+ +:+ +:+ +:+ :+:+:+ +:+ +:+ \n", + "+#+ +:+ +#+ +#++:++#++: +#++:++#: +#+ +#+ +:+ +#+ +#++:++# \n", + "+#+ +#+ +#+ +#+ +#+ +#+ +#+ +#+ +#+#+# +#+ \n", + "#+# #+# #+# #+# #+# #+# #+# #+# #+#+# #+# \n", + "### ### ### ### ### ### ########### ### #### ########## \n", + "==================================================================\n", + "Multi-core Algorithm for Rapid Identification of Nucleotide Edits\n", + "==================================================================\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", + "WARNING /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/same_pos_dif_reads_test is not empty\n", + "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n", + "~~~~~~~~~~~~~~~~~~\n", + "Identifying edits\n", + "~~~~~~~~~~~~~~~~~~\n", + "Each contig is being split into 16 subsets...\n", + "contig_lengths_dict:{'chr1': 248956422, 'chr2': 242193529, 'chr3': 198295559, 'chr4': 190214555, 'chr5': 181538259, 'chr6': 170805979, 'chr7': 159345973, 'chr8': 145138636, 'chr9': 138394717, 'chr10': 133797422, 'chr11': 135086622, 'chr12': 133275309, 'chr13': 114364328, 'chr14': 107043718, 'chr15': 101991189, 'chr16': 90338345, 'chr17': 83257441, 'chr18': 80373285, 'chr19': 58617616, 'chr20': 64444167, 'chr21': 46709983, 'chr22': 50818468, 'chrX': 156040895, 'chrY': 57227415, 'chrM': 16569, 'chr1_KI270706v1_random': 175055, 'chr1_KI270707v1_random': 32032, 'chr1_KI270708v1_random': 127682, 'chr1_KI270709v1_random': 66860, 'chr1_KI270710v1_random': 40176, 'chr1_KI270711v1_random': 42210, 'chr1_KI270712v1_random': 176043, 'chr1_KI270713v1_random': 40745, 'chr1_KI270714v1_random': 41717, 'chr2_KI270715v1_random': 161471, 'chr2_KI270716v1_random': 153799, 'chr3_GL000221v1_random': 155397, 'chr4_GL000008v2_random': 209709, 'chr5_GL000208v1_random': 92689, 'chr9_KI270717v1_random': 40062, 'chr9_KI270718v1_random': 38054, 'chr9_KI270719v1_random': 176845, 'chr9_KI270720v1_random': 39050, 'chr11_KI270721v1_random': 100316, 'chr14_GL000009v2_random': 201709, 'chr14_GL000225v1_random': 211173, 'chr14_KI270722v1_random': 194050, 'chr14_GL000194v1_random': 191469, 'chr14_KI270723v1_random': 38115, 'chr14_KI270724v1_random': 39555, 'chr14_KI270725v1_random': 172810, 'chr14_KI270726v1_random': 43739, 'chr15_KI270727v1_random': 448248, 'chr16_KI270728v1_random': 1872759, 'chr17_GL000205v2_random': 185591, 'chr17_KI270729v1_random': 280839, 'chr17_KI270730v1_random': 112551, 'chr22_KI270731v1_random': 150754, 'chr22_KI270732v1_random': 41543, 'chr22_KI270733v1_random': 179772, 'chr22_KI270734v1_random': 165050, 'chr22_KI270735v1_random': 42811, 'chr22_KI270736v1_random': 181920, 'chr22_KI270737v1_random': 103838, 'chr22_KI270738v1_random': 99375, 'chr22_KI270739v1_random': 73985, 'chrY_KI270740v1_random': 37240, 'chrUn_KI270302v1': 2274, 'chrUn_KI270304v1': 2165, 'chrUn_KI270303v1': 1942, 'chrUn_KI270305v1': 1472, 'chrUn_KI270322v1': 21476, 'chrUn_KI270320v1': 4416, 'chrUn_KI270310v1': 1201, 'chrUn_KI270316v1': 1444, 'chrUn_KI270315v1': 2276, 'chrUn_KI270312v1': 998, 'chrUn_KI270311v1': 12399, 'chrUn_KI270317v1': 37690, 'chrUn_KI270412v1': 1179, 'chrUn_KI270411v1': 2646, 'chrUn_KI270414v1': 2489, 'chrUn_KI270419v1': 1029, 'chrUn_KI270418v1': 2145, 'chrUn_KI270420v1': 2321, 'chrUn_KI270424v1': 2140, 'chrUn_KI270417v1': 2043, 'chrUn_KI270422v1': 1445, 'chrUn_KI270423v1': 981, 'chrUn_KI270425v1': 1884, 'chrUn_KI270429v1': 1361, 'chrUn_KI270442v1': 392061, 'chrUn_KI270466v1': 1233, 'chrUn_KI270465v1': 1774, 'chrUn_KI270467v1': 3920, 'chrUn_KI270435v1': 92983, 'chrUn_KI270438v1': 112505, 'chrUn_KI270468v1': 4055, 'chrUn_KI270510v1': 2415, 'chrUn_KI270509v1': 2318, 'chrUn_KI270518v1': 2186, 'chrUn_KI270508v1': 1951, 'chrUn_KI270516v1': 1300, 'chrUn_KI270512v1': 22689, 'chrUn_KI270519v1': 138126, 'chrUn_KI270522v1': 5674, 'chrUn_KI270511v1': 8127, 'chrUn_KI270515v1': 6361, 'chrUn_KI270507v1': 5353, 'chrUn_KI270517v1': 3253, 'chrUn_KI270529v1': 1899, 'chrUn_KI270528v1': 2983, 'chrUn_KI270530v1': 2168, 'chrUn_KI270539v1': 993, 'chrUn_KI270538v1': 91309, 'chrUn_KI270544v1': 1202, 'chrUn_KI270548v1': 1599, 'chrUn_KI270583v1': 1400, 'chrUn_KI270587v1': 2969, 'chrUn_KI270580v1': 1553, 'chrUn_KI270581v1': 7046, 'chrUn_KI270579v1': 31033, 'chrUn_KI270589v1': 44474, 'chrUn_KI270590v1': 4685, 'chrUn_KI270584v1': 4513, 'chrUn_KI270582v1': 6504, 'chrUn_KI270588v1': 6158, 'chrUn_KI270593v1': 3041, 'chrUn_KI270591v1': 5796, 'chrUn_KI270330v1': 1652, 'chrUn_KI270329v1': 1040, 'chrUn_KI270334v1': 1368, 'chrUn_KI270333v1': 2699, 'chrUn_KI270335v1': 1048, 'chrUn_KI270338v1': 1428, 'chrUn_KI270340v1': 1428, 'chrUn_KI270336v1': 1026, 'chrUn_KI270337v1': 1121, 'chrUn_KI270363v1': 1803, 'chrUn_KI270364v1': 2855, 'chrUn_KI270362v1': 3530, 'chrUn_KI270366v1': 8320, 'chrUn_KI270378v1': 1048, 'chrUn_KI270379v1': 1045, 'chrUn_KI270389v1': 1298, 'chrUn_KI270390v1': 2387, 'chrUn_KI270387v1': 1537, 'chrUn_KI270395v1': 1143, 'chrUn_KI270396v1': 1880, 'chrUn_KI270388v1': 1216, 'chrUn_KI270394v1': 970, 'chrUn_KI270386v1': 1788, 'chrUn_KI270391v1': 1484, 'chrUn_KI270383v1': 1750, 'chrUn_KI270393v1': 1308, 'chrUn_KI270384v1': 1658, 'chrUn_KI270392v1': 971, 'chrUn_KI270381v1': 1930, 'chrUn_KI270385v1': 990, 'chrUn_KI270382v1': 4215, 'chrUn_KI270376v1': 1136, 'chrUn_KI270374v1': 2656, 'chrUn_KI270372v1': 1650, 'chrUn_KI270373v1': 1451, 'chrUn_KI270375v1': 2378, 'chrUn_KI270371v1': 2805, 'chrUn_KI270448v1': 7992, 'chrUn_KI270521v1': 7642, 'chrUn_GL000195v1': 182896, 'chrUn_GL000219v1': 179198, 'chrUn_GL000220v1': 161802, 'chrUn_GL000224v1': 179693, 'chrUn_KI270741v1': 157432, 'chrUn_GL000226v1': 15008, 'chrUn_GL000213v1': 164239, 'chrUn_KI270743v1': 210658, 'chrUn_KI270744v1': 168472, 'chrUn_KI270745v1': 41891, 'chrUn_KI270746v1': 66486, 'chrUn_KI270747v1': 198735, 'chrUn_KI270748v1': 93321, 'chrUn_KI270749v1': 158759, 'chrUn_KI270750v1': 148850, 'chrUn_KI270751v1': 150742, 'chrUn_KI270752v1': 27745, 'chrUn_KI270753v1': 62944, 'chrUn_KI270754v1': 40191, 'chrUn_KI270755v1': 36723, 'chrUn_KI270756v1': 79590, 'chrUn_KI270757v1': 71251, 'chrUn_GL000214v1': 137718, 'chrUn_KI270742v1': 186739, 'chrUn_GL000216v2': 176608, 'chrUn_GL000218v1': 161147, 'chrEBV': 171823}\n", + "\tContig chr17\n", + "16 total jobs\n", + "chr17:000, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:001, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:002, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:003, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:005, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:007, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:008, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:012, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:013, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:014, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 55C43\n", + "CIGAR tag 1S97M17144N2M\n", + "is_reverse False\n", + "is_read1 False\n", + "is_read2 True\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse True\n", + "read id VH01429:22:AACFJ5NHV:2:2606:39477:40189\n", + "VH01429:22:AACFJ5NHV:2:2606:39477:40189\t163\t#16\t83195127\t255\t1S97M17144N2M\t#16\t83195141\t17258\tTCCCACCTTCGCTTCCGGGACCACAGAGCCCCTGGAGCCTGCACGCCACGGAGTCTACCACTGAGGAGTGAGGAGGCCTCTTGTGGGGACAGATCTGGGA\tarray('B', [34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34])\t[('MD', '55C43'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 1), ('AS', 197), ('XS', '+')]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 55C43\n", + "CIGAR string 1S97M17144N2M\n", + "Reference seq: CCCACCTTCGCTTCCGGGACCACAGAGCCCCTGGAGCCTGCACGCCACGGAGTCTCCCACTGAGGAGTGAGGAGGCCTCTTGTGGGGACAGATCTGGGA\n", + "Aligned seq: TCCCACCTTCGCTTCCGGGACCACAGAGCCCCTGGAGCCTGCACGCCACGGAGTCTACCACTGAGGAGTGAGGAGGCCTCTTGTGGGGACAGATCTGGGA\n", + "Qualities: array('B', [34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(4, 1), (0, 97), (3, 17144), (0, 2)]\n", + "Aligned sequence before clipping (if needed):\n", + " TCCCACCTTCGCTTCCGGGACCACAGAGCCCCTGGAGCCTGCACGCCACGGAGTCTACCACTGAGGAGTGAGGAGGCCTCTTGTGGGGACAGATCTGGGA\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 97), (3, 17144), (0, 2)]\n", + "Aligned sequence after clipping (if needed):\n", + " CCCACCTTCGCTTCCGGGACCACAGAGCCCCTGGAGCCTGCACGCCACGGAGTCTACCACTGAGGAGTGAGGAGGCCTCTTGTGGGGACAGATCTGGGA\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['55', '43']\n", + "[55, 99]\n", + "Indicated reference seq:\n", + " cccaccttcgcttccgggaccacagagcccctggagcctgcacgccacggagtctCccactgaggagtgaggaggcctcttgtggggacagatctggga\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " cccaccttcgcttccgggaccacagagcccctggagcctgcacgccacggagtctCccactgaggagtgaggaggcctcttgtggggacagatctgg17144*nga\n", + "Fixed aligned seq:\n", + " CCCACCTTCGCTTCCGGGACCACAGAGCCCCTGGAGCCTGCACGCCACGGAGTCTACCACTGAGGAGTGAGGAGGCCTCTTGTGGGGACAGATCTGG17144*nGA\n", + "Finalized fixed aligned seq:\n", + " cccaccttcgcttccgggaccacagagcccctggagcctgcacgccacggagtctAccactgaggagtgaggaggcctcttgtggggacagatctgg17144*nga\n", + "Indicated qualities:\n", + " 343434343434342626343434343434343434343434263434263434343434343434343434343434263434343434343434343434343434341234341234343426343434343434343434343434343434343434343434343434263434343434343412343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['A']\n", + "ref bases ['C']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['A'], ref bases: ['C']\n", + "Getting info: A C 12 56\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 86C13\n", + "CIGAR tag 1S17M4579N83M\n", + "is_reverse False\n", + "is_read1 False\n", + "is_read2 True\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse True\n", + "read id VH01429:22:AACFJ5NHV:2:1602:67558:13893\n", + "VH01429:22:AACFJ5NHV:2:1602:67558:13893\t163\t#16\t83195207\t255\t1S17M4579N83M\t#16\t83199866\t4757\tGTGTGGGGACAGATCTGGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAAT\tarray('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\t[('MD', '86C13'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 1), ('AS', 191), ('XS', '+')]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 86C13\n", + "CIGAR string 1S17M4579N83M\n", + "Reference seq: TGTGGGGACAGATCTGGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTCTGTGGCGATTAAT\n", + "Aligned seq: GTGTGGGGACAGATCTGGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAAT\n", + "Qualities: array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(4, 1), (0, 17), (3, 4579), (0, 83)]\n", + "Aligned sequence before clipping (if needed):\n", + " GTGTGGGGACAGATCTGGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAAT\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 17), (3, 4579), (0, 83)]\n", + "Aligned sequence after clipping (if needed):\n", + " TGTGGGGACAGATCTGGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAAT\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['86', '13']\n", + "[86, 100]\n", + "Indicated reference seq:\n", + " tgtggggacagatctggaatgagtggcatccaaacctgactcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaat\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " tgtggggacagatctgg4579*naatgagtggcatccaaacctgactcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaat\n", + "Fixed aligned seq:\n", + " TGTGGGGACAGATCTGG4579*nAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAAT\n", + "Finalized fixed aligned seq:\n", + " tgtggggacagatctgg4579*naatgagtggcatccaaacctgactcatatttccaactttattaatttttgcaagacttcggagggtgctGtgtggcgattaat\n", + "Indicated qualities:\n", + " 34343434343434343434342634342634343434343434343434343434343434343434343434343412343434343434343434343434343434343434343434343434343434343434341234343434343434343434343426343434343434343434343434343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G']\n", + "ref bases ['C']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G'], ref bases: ['C']\n", + "Getting info: G C 34 4666\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 95C4\n", + "CIGAR tag 1S100M\n", + "is_reverse False\n", + "is_read1 False\n", + "is_read2 True\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse True\n", + "read id VH01429:22:AACFJ5NHV:1:1109:44703:39053\n", + "VH01429:22:AACFJ5NHV:1:1109:44703:39053\t163\t#16\t83199777\t255\t1S100M\t#16\t83199839\t163\tGCTATTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTG\tarray('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34])\t[('MD', '95C4'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 1), ('AS', 191)]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 95C4\n", + "CIGAR string 1S100M\n", + "Reference seq: CTATTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTCTGTG\n", + "Aligned seq: GCTATTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTG\n", + "Qualities: array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(4, 1), (0, 100)]\n", + "Aligned sequence before clipping (if needed):\n", + " GCTATTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTG\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 100)]\n", + "Aligned sequence after clipping (if needed):\n", + " CTATTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTG\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['95', '4']\n", + "[95, 100]\n", + "Indicated reference seq:\n", + " ctattattgagtttcttctttttcagaatgagtggcatccaaacctgactcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtg\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " ctattattgagtttcttctttttcagaatgagtggcatccaaacctgactcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtg\n", + "Fixed aligned seq:\n", + " CTATTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTG\n", + "Finalized fixed aligned seq:\n", + " ctattattgagtttcttctttttcagaatgagtggcatccaaacctgactcatatttccaactttattaatttttgcaagacttcggagggtgctGtgtg\n", + "Indicated qualities:\n", + " 34343434343434343434343434343434123434343434343434343434343434343434343434343434343426343434343434343434343434343434343434342634343434343426343434343434343434343434343434343434343434343426343434343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G']\n", + "ref bases ['C']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G'], ref bases: ['C']\n", + "Getting info: G C 34 96\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 92C8\n", + "CIGAR tag 101M\n", + "is_reverse True\n", + "is_read1 True\n", + "is_read2 False\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse False\n", + "read id VH01429:22:AACFJ5NHV:2:1208:38151:26028\n", + "VH01429:22:AACFJ5NHV:2:1208:38151:26028\t83\t#16\t83199780\t255\t101M\t#16\t83199711\t-170\tTTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGA\tarray('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26])\t[('MD', '92C8'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 1), ('AS', 195)]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 92C8\n", + "CIGAR string 101M\n", + "Reference seq: TTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTCTGTGGCGA\n", + "Aligned seq: TTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGA\n", + "Qualities: array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(0, 101)]\n", + "Aligned sequence before clipping (if needed):\n", + " TTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGA\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 101)]\n", + "Aligned sequence after clipping (if needed):\n", + " TTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGA\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['92', '8']\n", + "[92, 101]\n", + "Indicated reference seq:\n", + " ttattgagtttcttctttttcagaatgagtggcatccaaacctgactcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcga\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " ttattgagtttcttctttttcagaatgagtggcatccaaacctgactcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcga\n", + "Fixed aligned seq:\n", + " TTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGA\n", + "Finalized fixed aligned seq:\n", + " ttattgagtttcttctttttcagaatgagtggcatccaaacctgactcatatttccaactttattaatttttgcaagacttcggagggtgctGtgtggcga\n", + "Indicated qualities:\n", + " 3434343434343434343426343426343434343434343426343434343434343434343434343434343434343434343434343434343434343434343434263434343434343426343434343434343434343434343434343434343434343434343434343426343426\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G']\n", + "ref bases ['C']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G'], ref bases: ['C']\n", + "Getting info: G C 34 93\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 60C37\n", + "CIGAR tag 1S98M2S\n", + "is_reverse False\n", + "is_read1 False\n", + "is_read2 True\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse True\n", + "read id VH01429:22:AACFJ5NHV:1:2112:47146:35399\n", + "VH01429:22:AACFJ5NHV:1:2112:47146:35399\t163\t#16\t83199812\t255\t1S98M2S\t#16\t83199946\t232\tTCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAAT\tarray('B', [34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\t[('MD', '60C37'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 1), ('AS', 192)]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 60C37\n", + "CIGAR string 1S98M2S\n", + "Reference seq: CATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTCTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCA\n", + "Aligned seq: TCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAAT\n", + "Qualities: array('B', [34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(4, 1), (0, 98), (4, 2)]\n", + "Aligned sequence before clipping (if needed):\n", + " TCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAAT\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 98)]\n", + "Aligned sequence after clipping (if needed):\n", + " CATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCA\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['60', '37']\n", + "[60, 98]\n", + "Indicated reference seq:\n", + " catccaaacctgactcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgca\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " catccaaacctgactcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgca\n", + "Fixed aligned seq:\n", + " CATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCA\n", + "Finalized fixed aligned seq:\n", + " catccaaacctgactcatatttccaactttattaatttttgcaagacttcggagggtgctGtgtggcgattaatattgctgagctgagcacagctgca\n", + "Indicated qualities:\n", + " 3434343434343426343434343434343434343434343434342634343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G']\n", + "ref bases ['C']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G'], ref bases: ['C']\n", + "Getting info: G C 34 61\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 5C50C37G5\n", + "CIGAR tag 1S100M\n", + "is_reverse False\n", + "is_read1 False\n", + "is_read2 True\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse True\n", + "read id VH01429:22:AACFJ5NHV:2:2610:69319:26899\n", + "VH01429:22:AACFJ5NHV:2:2610:69319:26899\t163\t#16\t83199816\t255\t1S100M\t#16\t83199822\t105\tTCAAACTTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTT\tarray('B', [34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 26, 34, 34, 34, 12, 34, 34, 12, 34, 12, 26, 26, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26])\t[('MD', '5C50C37G5'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 3), ('AS', 187)]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 5C50C37G5\n", + "CIGAR string 1S100M\n", + "Reference seq: CAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTCTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAGTACTT\n", + "Aligned seq: TCAAACTTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTT\n", + "Qualities: array('B', [34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 26, 34, 34, 34, 12, 34, 34, 12, 34, 12, 26, 26, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(4, 1), (0, 100)]\n", + "Aligned sequence before clipping (if needed):\n", + " TCAAACTTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTT\n", + "Qualities before clipping:\n", + " array('B', [34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 26, 34, 34, 34, 12, 34, 34, 12, 34, 12, 26, 26, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 100)]\n", + "Aligned sequence after clipping (if needed):\n", + " CAAACTTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTT\n", + "Qualities after clipping:\n", + " array('B', [26, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 26, 34, 34, 34, 12, 34, 34, 12, 34, 12, 26, 26, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['5', '50', '37', '5']\n", + "[5, 56, 94, 100]\n", + "Indicated reference seq:\n", + " caaacCtgactcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactt\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " caaacCtgactcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactt\n", + "Fixed aligned seq:\n", + " CAAACTTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTT\n", + "Finalized fixed aligned seq:\n", + " caaacTtgactcatatttccaactttattaatttttgcaagacttcggagggtgctGtgtggcgattaatattgctgagctgagcacagctgcaAtactt\n", + "Indicated qualities:\n", + " 26343434343434343412342634343412343412341226263434343434341234343434343434343434123434343434343434343434343434343434343434342634343434343412343434343434263434343434343434343434343434343434343434342626\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['T', 'G', 'A']\n", + "ref bases ['C', 'C', 'G']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['T', 'G', 'A'], ref bases: ['C', 'C', 'G']\n", + "Getting info: T C 34 6\n", + "Getting info: G C 34 57\n", + "Getting info: A G 34 95\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 50C37G10\n", + "CIGAR tag 1S99M1S\n", + "is_reverse True\n", + "is_read1 True\n", + "is_read2 False\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse False\n", + "read id VH01429:22:AACFJ5NHV:2:2610:69319:26899\n", + "VH01429:22:AACFJ5NHV:2:2610:69319:26899\t83\t#16\t83199822\t255\t1S99M1S\t#16\t83199816\t-105\tTTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGA\tarray('B', [34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 26, 26, 34, 34, 12, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 26, 34, 34, 26, 34, 34, 12, 34, 12, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\t[('MD', '50C37G10'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 2), ('AS', 187)]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 50C37G10\n", + "CIGAR string 1S99M1S\n", + "Reference seq: TGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTCTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAGTACTTTCCTG\n", + "Aligned seq: TTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGA\n", + "Qualities: array('B', [34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 26, 26, 34, 34, 12, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 26, 34, 34, 26, 34, 34, 12, 34, 12, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(4, 1), (0, 99), (4, 1)]\n", + "Aligned sequence before clipping (if needed):\n", + " TTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGA\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 26, 26, 34, 34, 12, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 26, 34, 34, 26, 34, 34, 12, 34, 12, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 99)]\n", + "Aligned sequence after clipping (if needed):\n", + " TGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTG\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 12, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 26, 26, 34, 34, 12, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 26, 34, 34, 26, 34, 34, 12, 34, 12, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['50', '37', '10']\n", + "[50, 88, 99]\n", + "Indicated reference seq:\n", + " tgactcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctg\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " tgactcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctg\n", + "Fixed aligned seq:\n", + " TGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTG\n", + "Finalized fixed aligned seq:\n", + " tgactcatatttccaactttattaatttttgcaagacttcggagggtgctGtgtggcgattaatattgctgagctgagcacagctgcaAtactttcctg\n", + "Indicated qualities:\n", + " 343434343434341234123434343434343434343434343434343434343412343426263434121234343434343434343434343434343412342634342634341234123434343434341234343434343434343434343434343434343434343434343434343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G', 'A']\n", + "ref bases ['C', 'G']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G', 'A'], ref bases: ['C', 'G']\n", + "Getting info: G C 34 51\n", + "Getting info: A G 34 89\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 48C37G14\n", + "CIGAR tag 101M\n", + "is_reverse True\n", + "is_read1 True\n", + "is_read2 False\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse False\n", + "read id VH01429:22:AACFJ5NHV:1:1403:49513:32843\n", + "VH01429:22:AACFJ5NHV:1:1403:49513:32843\t83\t#16\t83199824\t255\t101M\t#16\t83199748\t-177\tACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAA\tarray('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\t[('MD', '48C37G14'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 2), ('AS', 194)]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 48C37G14\n", + "CIGAR string 101M\n", + "Reference seq: ACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTCTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAGTACTTTCCTGTAAA\n", + "Aligned seq: ACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAA\n", + "Qualities: array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(0, 101)]\n", + "Aligned sequence before clipping (if needed):\n", + " ACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAA\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 101)]\n", + "Aligned sequence after clipping (if needed):\n", + " ACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAA\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['48', '37', '14']\n", + "[48, 86, 101]\n", + "Indicated reference seq:\n", + " actcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaa\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " actcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaa\n", + "Fixed aligned seq:\n", + " ACTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAA\n", + "Finalized fixed aligned seq:\n", + " actcatatttccaactttattaatttttgcaagacttcggagggtgctGtgtggcgattaatattgctgagctgagcacagctgcaAtactttcctgtaaa\n", + "Indicated qualities:\n", + " 3434343434343434343434343434341234123434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G', 'A']\n", + "ref bases ['C', 'G']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G', 'A'], ref bases: ['C', 'G']\n", + "Getting info: G C 34 49\n", + "Getting info: A G 34 87\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 47C37G14\n", + "CIGAR tag 1S100M\n", + "is_reverse False\n", + "is_read1 False\n", + "is_read2 True\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse True\n", + "read id VH01429:22:AACFJ5NHV:1:2414:26942:20235\n", + "VH01429:22:AACFJ5NHV:1:2414:26942:20235\t163\t#16\t83199825\t255\t1S100M\t#16\t83199839\t115\tTCTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAA\tarray('B', [34, 12, 34, 34, 34, 12, 34, 34, 26, 34, 34, 34, 34, 12, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 26, 34, 12, 34, 12, 26, 12, 34, 34, 26, 12, 34, 34, 34, 34, 26, 34, 34, 26, 34, 26, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34])\t[('MD', '47C37G14'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 2), ('AS', 191)]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 47C37G14\n", + "CIGAR string 1S100M\n", + "Reference seq: CTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTCTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAGTACTTTCCTGTAAA\n", + "Aligned seq: TCTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAA\n", + "Qualities: array('B', [34, 12, 34, 34, 34, 12, 34, 34, 26, 34, 34, 34, 34, 12, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 26, 34, 12, 34, 12, 26, 12, 34, 34, 26, 12, 34, 34, 34, 34, 26, 34, 34, 26, 34, 26, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(4, 1), (0, 100)]\n", + "Aligned sequence before clipping (if needed):\n", + " TCTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAA\n", + "Qualities before clipping:\n", + " array('B', [34, 12, 34, 34, 34, 12, 34, 34, 26, 34, 34, 34, 34, 12, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 26, 34, 12, 34, 12, 26, 12, 34, 34, 26, 12, 34, 34, 34, 34, 26, 34, 34, 26, 34, 26, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 100)]\n", + "Aligned sequence after clipping (if needed):\n", + " CTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAA\n", + "Qualities after clipping:\n", + " array('B', [12, 34, 34, 34, 12, 34, 34, 26, 34, 34, 34, 34, 12, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 26, 34, 12, 34, 12, 26, 12, 34, 34, 26, 12, 34, 34, 34, 34, 26, 34, 34, 26, 34, 26, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['47', '37', '14']\n", + "[47, 85, 100]\n", + "Indicated reference seq:\n", + " ctcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaa\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " ctcatatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaa\n", + "Fixed aligned seq:\n", + " CTCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAA\n", + "Finalized fixed aligned seq:\n", + " ctcatatttccaactttattaatttttgcaagacttcggagggtgctGtgtggcgattaatattgctgagctgagcacagctgcaAtactttcctgtaaa\n", + "Indicated qualities:\n", + " 12343434123434263434343412343434263434343434343434343434343434123434343426343426343434343434343434341226343434343434343434263434263434263412341226123434261234343434263434263426343434341234343434343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G', 'A']\n", + "ref bases ['C', 'G']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G', 'A'], ref bases: ['C', 'G']\n", + "Getting info: G C 34 48\n", + "Getting info: A G 26 86\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 2T9T0T26G4C37G1A11\n", + "CIGAR tag 3S97M\n", + "is_reverse False\n", + "is_read1 False\n", + "is_read2 True\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse True\n", + "read id VH01429:22:AACFJ5NHV:2:1608:28097:17679\n", + "VH01429:22:AACFJ5NHV:2:1608:28097:17679\t163\t#16\t83199827\t255\t3S97M\t#16\t83199827\t100\tCCACAAATTTCCAACAATATTAATTTTTGCAAGACTTCGGAGGCTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATTCTTTCCTGTAA\tarray('B', [12, 12, 12, 12, 12, 12, 34, 12, 34, 34, 34, 12, 34, 34, 12, 12, 12, 34, 34, 34, 12, 12, 34, 12, 12, 34, 12, 12, 34, 34, 34, 34, 26, 34, 34, 12, 26, 34, 12, 34, 26, 34, 12, 12, 34, 34, 34, 34, 34, 12, 12, 26, 26, 34, 34, 34, 34, 34, 34, 26, 34, 34, 12, 34, 12, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34])\t[('MD', '2T9T0T26G4C37G1A11'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 7), ('AS', 177)]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 2T9T0T26G4C37G1A11\n", + "CIGAR string 3S97M\n", + "Reference seq: CATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTCTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAGTACTTTCCTGTAA\n", + "Aligned seq: CCACAAATTTCCAACAATATTAATTTTTGCAAGACTTCGGAGGCTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATTCTTTCCTGTAA\n", + "Qualities: array('B', [12, 12, 12, 12, 12, 12, 34, 12, 34, 34, 34, 12, 34, 34, 12, 12, 12, 34, 34, 34, 12, 12, 34, 12, 12, 34, 12, 12, 34, 34, 34, 34, 26, 34, 34, 12, 26, 34, 12, 34, 26, 34, 12, 12, 34, 34, 34, 34, 34, 12, 12, 26, 26, 34, 34, 34, 34, 34, 34, 26, 34, 34, 12, 34, 12, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(4, 3), (0, 97)]\n", + "Aligned sequence before clipping (if needed):\n", + " CCACAAATTTCCAACAATATTAATTTTTGCAAGACTTCGGAGGCTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATTCTTTCCTGTAA\n", + "Qualities before clipping:\n", + " array('B', [12, 12, 12, 12, 12, 12, 34, 12, 34, 34, 34, 12, 34, 34, 12, 12, 12, 34, 34, 34, 12, 12, 34, 12, 12, 34, 12, 12, 34, 34, 34, 34, 26, 34, 34, 12, 26, 34, 12, 34, 26, 34, 12, 12, 34, 34, 34, 34, 34, 12, 12, 26, 26, 34, 34, 34, 34, 34, 34, 26, 34, 34, 12, 34, 12, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 97)]\n", + "Aligned sequence after clipping (if needed):\n", + " CAAATTTCCAACAATATTAATTTTTGCAAGACTTCGGAGGCTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATTCTTTCCTGTAA\n", + "Qualities after clipping:\n", + " array('B', [12, 12, 12, 34, 12, 34, 34, 34, 12, 34, 34, 12, 12, 12, 34, 34, 34, 12, 12, 34, 12, 12, 34, 12, 12, 34, 34, 34, 34, 26, 34, 34, 12, 26, 34, 12, 34, 26, 34, 12, 12, 34, 34, 34, 34, 34, 12, 12, 26, 26, 34, 34, 34, 34, 34, 34, 26, 34, 34, 12, 34, 12, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['2', '9', '0', '26', '4', '37', '1', '11']\n", + "[2, 12, 13, 40, 45, 83, 85, 97]\n", + "Indicated reference seq:\n", + " caTatttccaacTTtattaatttttgcaagacttcggaggGtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtActttcctgtaa\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " caTatttccaacTTtattaatttttgcaagacttcggaggGtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtActttcctgtaa\n", + "Fixed aligned seq:\n", + " CAAATTTCCAACAATATTAATTTTTGCAAGACTTCGGAGGCTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATTCTTTCCTGTAA\n", + "Finalized fixed aligned seq:\n", + " caAatttccaacAAtattaatttttgcaagacttcggaggCtgctGtgtggcgattaatattgctgagctgagcacagctgcaAtTctttcctgtaa\n", + "Indicated qualities:\n", + " 12121234123434341234341212123434341212341212341212343434342634341226341234263412123434343434121226263434343434342634341234122634343434343434343412343434343434343434343434123434342634343434343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['A', 'A', 'A', 'C', 'G', 'A', 'T']\n", + "ref bases ['T', 'T', 'T', 'G', 'C', 'G', 'A']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['A', 'A', 'A', 'C', 'G', 'A', 'T'], ref bases: ['T', 'T', 'T', 'G', 'C', 'G', 'A']\n", + "Getting info: A T 12 3\n", + "Getting info: A T 12 13\n", + "Getting info: A T 12 14\n", + "Getting info: C G 12 41\n", + "Getting info: G C 34 46\n", + "Getting info: A G 34 84\n", + "Getting info: T A 12 86\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 45C37G16\n", + "CIGAR tag 100M1S\n", + "is_reverse True\n", + "is_read1 True\n", + "is_read2 False\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse False\n", + "read id VH01429:22:AACFJ5NHV:2:1608:28097:17679\n", + "VH01429:22:AACFJ5NHV:2:1608:28097:17679\t83\t#16\t83199827\t255\t100M1S\t#16\t83199827\t-100\tCATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACG\tarray('B', [34, 26, 12, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 26, 34, 34, 34, 12, 12, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 26, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 12, 34, 34, 34, 26, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 12])\t[('MD', '45C37G16'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 2), ('AS', 177)]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 45C37G16\n", + "CIGAR string 100M1S\n", + "Reference seq: CATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTCTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAGTACTTTCCTGTAAAAC\n", + "Aligned seq: CATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACG\n", + "Qualities: array('B', [34, 26, 12, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 26, 34, 34, 34, 12, 12, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 26, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 12, 34, 34, 34, 26, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 12])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(0, 100), (4, 1)]\n", + "Aligned sequence before clipping (if needed):\n", + " CATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACG\n", + "Qualities before clipping:\n", + " array('B', [34, 26, 12, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 26, 34, 34, 34, 12, 12, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 26, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 12, 34, 34, 34, 26, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 12])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 100)]\n", + "Aligned sequence after clipping (if needed):\n", + " CATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAAC\n", + "Qualities after clipping:\n", + " array('B', [34, 26, 12, 34, 34, 34, 34, 26, 34, 34, 34, 26, 34, 34, 34, 34, 34, 26, 34, 34, 34, 12, 12, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 26, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 12, 34, 34, 34, 26, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['45', '37', '16']\n", + "[45, 83, 100]\n", + "Indicated reference seq:\n", + " catatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaaac\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " catatttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaaac\n", + "Fixed aligned seq:\n", + " CATATTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAAC\n", + "Finalized fixed aligned seq:\n", + " catatttccaactttattaatttttgcaagacttcggagggtgctGtgtggcgattaatattgctgagctgagcacagctgcaAtactttcctgtaaaac\n", + "Indicated qualities:\n", + " 34261234343434263434342634343434342634343412123434343426343434343434343434343434343434341226343434343434343434343434343426342612343434343434343434341234343434123434342612343434343434343434343412343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G', 'A']\n", + "ref bases ['C', 'G']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G', 'A'], ref bases: ['C', 'G']\n", + "Getting info: G C 26 46\n", + "Getting info: A G 26 84\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 40C37G20\n", + "CIGAR tag 99M2S\n", + "is_reverse True\n", + "is_read1 True\n", + "is_read2 False\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse False\n", + "read id VH01429:22:AACFJ5NHV:2:1104:58090:46985\n", + "VH01429:22:AACFJ5NHV:2:1104:58090:46985\t83\t#16\t83199832\t255\t99M2S\t#16\t83195148\t-4783\tTTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACCT\tarray('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 12, 26, 34, 34, 12, 34, 34, 34, 34, 34, 34, 12, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 12])\t[('MD', '40C37G20'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 2), ('AS', 192), ('XS', '+')]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 40C37G20\n", + "CIGAR string 99M2S\n", + "Reference seq: TTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTCTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAGTACTTTCCTGTAAAACTGAC\n", + "Aligned seq: TTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACCT\n", + "Qualities: array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 12, 26, 34, 34, 12, 34, 34, 34, 34, 34, 34, 12, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 12])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(0, 99), (4, 2)]\n", + "Aligned sequence before clipping (if needed):\n", + " TTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACCT\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 12, 26, 34, 34, 12, 34, 34, 34, 34, 34, 34, 12, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 12])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 99)]\n", + "Aligned sequence after clipping (if needed):\n", + " TTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGAC\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 12, 26, 34, 34, 12, 34, 34, 34, 34, 34, 34, 12, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['40', '37', '20']\n", + "[40, 78, 99]\n", + "Indicated reference seq:\n", + " ttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaaactgac\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " ttccaactttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaaactgac\n", + "Fixed aligned seq:\n", + " TTCCAACTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGAC\n", + "Finalized fixed aligned seq:\n", + " ttccaactttattaatttttgcaagacttcggagggtgctGtgtggcgattaatattgctgagctgagcacagctgcaAtactttcctgtaaaactgac\n", + "Indicated qualities:\n", + " 343434343434343434263412263434123434343434341234342634343434343434343434343434343434343434343434342634343434343434263434343434343434343434262634343434343434342626123434343434343434343434343434343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G', 'A']\n", + "ref bases ['C', 'G']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G', 'A'], ref bases: ['C', 'G']\n", + "Getting info: G C 34 41\n", + "Getting info: A G 34 79\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 33C37G19C9\n", + "CIGAR tag 101M\n", + "is_reverse True\n", + "is_read1 True\n", + "is_read2 False\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse False\n", + "read id VH01429:22:AACFJ5NHV:1:1109:44703:39053\n", + "VH01429:22:AACFJ5NHV:1:1109:44703:39053\t83\t#16\t83199839\t255\t101M\t#16\t83199777\t-163\tTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGATTAAAGGAGA\tarray('B', [34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12])\t[('MD', '33C37G19C9'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 3), ('AS', 191)]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 33C37G19C9\n", + "CIGAR string 101M\n", + "Reference seq: TTTATTAATTTTTGCAAGACTTCGGAGGGTGCTCTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAGTACTTTCCTGTAAAACTGACTAAAGGAGA\n", + "Aligned seq: TTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGATTAAAGGAGA\n", + "Qualities: array('B', [34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(0, 101)]\n", + "Aligned sequence before clipping (if needed):\n", + " TTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGATTAAAGGAGA\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 101)]\n", + "Aligned sequence after clipping (if needed):\n", + " TTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGATTAAAGGAGA\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['33', '37', '19', '9']\n", + "[33, 71, 91, 101]\n", + "Indicated reference seq:\n", + " tttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaaactgaCtaaaggaga\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " tttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaaactgaCtaaaggaga\n", + "Fixed aligned seq:\n", + " TTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGATTAAAGGAGA\n", + "Finalized fixed aligned seq:\n", + " tttattaatttttgcaagacttcggagggtgctGtgtggcgattaatattgctgagctgagcacagctgcaAtactttcctgtaaaactgaTtaaaggaga\n", + "Indicated qualities:\n", + " 3434343426343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343412343434343434343434343412\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G', 'A', 'T']\n", + "ref bases ['C', 'G', 'C']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G', 'A', 'T'], ref bases: ['C', 'G', 'C']\n", + "Getting info: G C 34 34\n", + "Getting info: A G 34 72\n", + "Getting info: T C 34 92\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 33C37G29\n", + "CIGAR tag 101M\n", + "is_reverse True\n", + "is_read1 True\n", + "is_read2 False\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse False\n", + "read id VH01429:22:AACFJ5NHV:1:2414:26942:20235\n", + "VH01429:22:AACFJ5NHV:1:2414:26942:20235\t83\t#16\t83199839\t255\t101M\t#16\t83199825\t-115\tTTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACTAAAGGAGA\tarray('B', [34, 34, 34, 34, 26, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 26, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 26])\t[('MD', '33C37G29'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 2), ('AS', 191)]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 33C37G29\n", + "CIGAR string 101M\n", + "Reference seq: TTTATTAATTTTTGCAAGACTTCGGAGGGTGCTCTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAGTACTTTCCTGTAAAACTGACTAAAGGAGA\n", + "Aligned seq: TTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACTAAAGGAGA\n", + "Qualities: array('B', [34, 34, 34, 34, 26, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 26, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 26])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(0, 101)]\n", + "Aligned sequence before clipping (if needed):\n", + " TTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACTAAAGGAGA\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 26, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 26, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 26])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 101)]\n", + "Aligned sequence after clipping (if needed):\n", + " TTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACTAAAGGAGA\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 26, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 26, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 26])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['33', '37', '29']\n", + "[33, 71, 101]\n", + "Indicated reference seq:\n", + " tttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaaactgactaaaggaga\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " tttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaaactgactaaaggaga\n", + "Fixed aligned seq:\n", + " TTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACTAAAGGAGA\n", + "Finalized fixed aligned seq:\n", + " tttattaatttttgcaagacttcggagggtgctGtgtggcgattaatattgctgagctgagcacagctgcaAtactttcctgtaaaactgactaaaggaga\n", + "Indicated qualities:\n", + " 3434343426343426263434343434343434343434343426343434343434343412343434343434263412343434343434343434343434343434342634341234343434343434343434342626343434342634343434342634343434343434343434341234343426\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G', 'A']\n", + "ref bases ['C', 'G']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G', 'A'], ref bases: ['C', 'G']\n", + "Getting info: G C 34 34\n", + "Getting info: A G 34 72\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 6C37G53\n", + "CIGAR tag 98M2S\n", + "is_reverse True\n", + "is_read1 True\n", + "is_read2 False\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse False\n", + "read id VH01429:22:AACFJ5NHV:2:1602:67558:13893\n", + "VH01429:22:AACFJ5NHV:2:1602:67558:13893\t83\t#16\t83199866\t255\t98M2S\t#16\t83195207\t-4757\tGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACTAAAGGAGAAGTTGGTGTCTTCCTCATACAAGAGA\tarray('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26])\t[('MD', '6C37G53'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 2), ('AS', 191), ('XS', '+')]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 6C37G53\n", + "CIGAR string 98M2S\n", + "Reference seq: GGTGCTCTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAGTACTTTCCTGTAAAACTGACTAAAGGAGAAGTTGGTGTCTTCCTCATACAAGA\n", + "Aligned seq: GGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACTAAAGGAGAAGTTGGTGTCTTCCTCATACAAGAGA\n", + "Qualities: array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(0, 98), (4, 2)]\n", + "Aligned sequence before clipping (if needed):\n", + " GGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACTAAAGGAGAAGTTGGTGTCTTCCTCATACAAGAGA\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 98)]\n", + "Aligned sequence after clipping (if needed):\n", + " GGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACTAAAGGAGAAGTTGGTGTCTTCCTCATACAAGA\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['6', '37', '53']\n", + "[6, 44, 98]\n", + "Indicated reference seq:\n", + " ggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaaactgactaaaggagaagttggtgtcttcctcatacaaga\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " ggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaaactgactaaaggagaagttggtgtcttcctcatacaaga\n", + "Fixed aligned seq:\n", + " GGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACTAAAGGAGAAGTTGGTGTCTTCCTCATACAAGA\n", + "Finalized fixed aligned seq:\n", + " ggtgctGtgtggcgattaatattgctgagctgagcacagctgcaAtactttcctgtaaaactgactaaaggagaagttggtgtcttcctcatacaaga\n", + "Indicated qualities:\n", + " 3434343434343434343434343434343434343426343434343434343434343434343434343434343434343434343434343434263434343434343434343434343434343434343434343434343434343434343434343434343434343434343434343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G', 'A']\n", + "ref bases ['C', 'G']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G', 'A'], ref bases: ['C', 'G']\n", + "Getting info: G C 34 7\n", + "Getting info: A G 34 45\n", + "chr17:015, total reads: 16, counts_df: chr17\n", + "edited 15\n", + "no_edits 1\n", + "total_edits 32\n", + "Reads processed:\t16\n", + "Time to process reads in min:\t0.15431\n", + "Read Summary:\n", + "edited 15\n", + "no_edits 1\n", + "total_edits 32\n", + "dtype: int64\n", + "\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Calculating coverage at edited sites, minimum read quality is 0...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "\tsplit chr17_000_0_5203591, 0/16...\n", + "\tsplit chr17_010_52035910_57239501, 10/16...\n", + "Done grouping! Concatenating ...\n", + "Done concatenating!\n", + "edit_info_grouped_per_contig_combined dict_keys(['chr17_000_0_5203591', 'chr17_001_5203591_10407182', 'chr17_002_10407182_15610773', 'chr17_003_15610773_20814364', 'chr17_004_20814364_26017955', 'chr17_005_26017955_31221546', 'chr17_006_31221546_36425137', 'chr17_007_36425137_41628728', 'chr17_008_41628728_46832319', 'chr17_009_46832319_52035910', 'chr17_010_52035910_57239501', 'chr17_011_57239501_62443092', 'chr17_012_62443092_67646683', 'chr17_013_67646683_72850274', 'chr17_014_72850274_78053865', 'chr17_015_78053865_83257456'])\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|██████████| 16/16 [00:08<00:00, 1.79it/s]\n", + "100%|██████████| 16/16 [00:08<00:00, 1.82it/s]\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Concatenating results...\n", + "Done concatenating.\n", + "original 32\n", + "filtered 24\n", + "dtype: int64\n", + "Total time to calculate coverage: 0.151 minutes\n", + "Filtering..\n", + "\tNumber of edits after filtering:\n", + "\t24\n", + "\tNumber of unique edit sites:\n", + "\t10\n", + "Writing sites...\n", + "\n", + "Adding strand-specific conversion...\n", + "\n", + "10 sites being converted to SAILOR format...\n", + "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", + "2 final deduplicated SAILOR-formatted sites\n", + "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed...\n", + "Current memory usage 21.436933MB; Peak: 22.546578MB\n", + "Time elapsed: 19.22s\n", + "-------------------------------\n", + "Deleting intermediate files...\n", + "-------------------------------\n", + "++++++\n", + "Done!\n", + "++++++\n", + "tax1bp3_chr17_3665556_read_test\n", + "Removing old files...\n", + "Running tests...\n", + "Assuming 16 cores available for multiprocessing. Set this to the number of available cores for optimal execution.\n", + "Arguments:\n", + "\tBAM filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/bams/tax1bp3_chr17_3665556_read.bam\n", + "\tAnnotation bedfile filepath:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed\n", + "\tOutput folder:\t/tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/tax1bp3_chr17_3665556_read_test\n", + "\tBarcode whitelist:\tNone\n", + "\tStrandedness:\t2\n", + "\tBarcode Tag:\tNone\n", + "\tPaired End:\tTrue\n", + "\tCoverage only:\tFalse\n", + "\tFiltering only:\tFalse\n", + "\tAnnotation only:\tFalse\n", + "\tSailor outputs:\tTrue\n", + "\tBedgraphs:\t[]\n", + "\tMinimum base quality:\t0\n", + "\tMinimum read quality:\t0\n", + "\tMinimum distance from end:\t0\n", + "\tMaximum edits per read:\tNone\n", + "\tContigs:\tchr17\n", + "\tNumber of intervals:\t16\n", + "\tCores:\t16\n", + "\tVerbose:\tTrue\n", + "\tKeep intermediate files:\tFalse\n", + "\tSkip coverage?:\tFalse\n", + "\n", + ":::: :::: ::: ::::::::: ::::::::::: :::: ::: :::::::::: \n", + "+:+:+: :+:+:+ :+: :+: :+: :+: :+: :+:+: :+: :+: \n", + "+:+ +:+:+ +:+ +:+ +:+ +:+ +:+ +:+ :+:+:+ +:+ +:+ \n", + "+#+ +:+ +#+ +#++:++#++: +#++:++#: +#+ +#+ +:+ +#+ +#++:++# \n", + "+#+ +#+ +#+ +#+ +#+ +#+ +#+ +#+ +#+#+# +#+ \n", + "#+# #+# #+# #+# #+# #+# #+# #+# #+#+# #+# \n", + "### ### ### ### ### ### ########### ### #### ########## \n", + "==================================================================\n", + "Multi-core Algorithm for Rapid Identification of Nucleotide Edits\n", + "==================================================================\n", + "~~~~~~~~~~~~~~~~~~\n", + "Identifying edits\n", + "~~~~~~~~~~~~~~~~~~\n", + "Each contig is being split into 16 subsets...\n", + "contig_lengths_dict:{'chr1': 248956422, 'chr2': 242193529, 'chr3': 198295559, 'chr4': 190214555, 'chr5': 181538259, 'chr6': 170805979, 'chr7': 159345973, 'chr8': 145138636, 'chr9': 138394717, 'chr10': 133797422, 'chr11': 135086622, 'chr12': 133275309, 'chr13': 114364328, 'chr14': 107043718, 'chr15': 101991189, 'chr16': 90338345, 'chr17': 83257441, 'chr18': 80373285, 'chr19': 58617616, 'chr20': 64444167, 'chr21': 46709983, 'chr22': 50818468, 'chrX': 156040895, 'chrY': 57227415, 'chrM': 16569, 'chr1_KI270706v1_random': 175055, 'chr1_KI270707v1_random': 32032, 'chr1_KI270708v1_random': 127682, 'chr1_KI270709v1_random': 66860, 'chr1_KI270710v1_random': 40176, 'chr1_KI270711v1_random': 42210, 'chr1_KI270712v1_random': 176043, 'chr1_KI270713v1_random': 40745, 'chr1_KI270714v1_random': 41717, 'chr2_KI270715v1_random': 161471, 'chr2_KI270716v1_random': 153799, 'chr3_GL000221v1_random': 155397, 'chr4_GL000008v2_random': 209709, 'chr5_GL000208v1_random': 92689, 'chr9_KI270717v1_random': 40062, 'chr9_KI270718v1_random': 38054, 'chr9_KI270719v1_random': 176845, 'chr9_KI270720v1_random': 39050, 'chr11_KI270721v1_random': 100316, 'chr14_GL000009v2_random': 201709, 'chr14_GL000225v1_random': 211173, 'chr14_KI270722v1_random': 194050, 'chr14_GL000194v1_random': 191469, 'chr14_KI270723v1_random': 38115, 'chr14_KI270724v1_random': 39555, 'chr14_KI270725v1_random': 172810, 'chr14_KI270726v1_random': 43739, 'chr15_KI270727v1_random': 448248, 'chr16_KI270728v1_random': 1872759, 'chr17_GL000205v2_random': 185591, 'chr17_KI270729v1_random': 280839, 'chr17_KI270730v1_random': 112551, 'chr22_KI270731v1_random': 150754, 'chr22_KI270732v1_random': 41543, 'chr22_KI270733v1_random': 179772, 'chr22_KI270734v1_random': 165050, 'chr22_KI270735v1_random': 42811, 'chr22_KI270736v1_random': 181920, 'chr22_KI270737v1_random': 103838, 'chr22_KI270738v1_random': 99375, 'chr22_KI270739v1_random': 73985, 'chrY_KI270740v1_random': 37240, 'chrUn_KI270302v1': 2274, 'chrUn_KI270304v1': 2165, 'chrUn_KI270303v1': 1942, 'chrUn_KI270305v1': 1472, 'chrUn_KI270322v1': 21476, 'chrUn_KI270320v1': 4416, 'chrUn_KI270310v1': 1201, 'chrUn_KI270316v1': 1444, 'chrUn_KI270315v1': 2276, 'chrUn_KI270312v1': 998, 'chrUn_KI270311v1': 12399, 'chrUn_KI270317v1': 37690, 'chrUn_KI270412v1': 1179, 'chrUn_KI270411v1': 2646, 'chrUn_KI270414v1': 2489, 'chrUn_KI270419v1': 1029, 'chrUn_KI270418v1': 2145, 'chrUn_KI270420v1': 2321, 'chrUn_KI270424v1': 2140, 'chrUn_KI270417v1': 2043, 'chrUn_KI270422v1': 1445, 'chrUn_KI270423v1': 981, 'chrUn_KI270425v1': 1884, 'chrUn_KI270429v1': 1361, 'chrUn_KI270442v1': 392061, 'chrUn_KI270466v1': 1233, 'chrUn_KI270465v1': 1774, 'chrUn_KI270467v1': 3920, 'chrUn_KI270435v1': 92983, 'chrUn_KI270438v1': 112505, 'chrUn_KI270468v1': 4055, 'chrUn_KI270510v1': 2415, 'chrUn_KI270509v1': 2318, 'chrUn_KI270518v1': 2186, 'chrUn_KI270508v1': 1951, 'chrUn_KI270516v1': 1300, 'chrUn_KI270512v1': 22689, 'chrUn_KI270519v1': 138126, 'chrUn_KI270522v1': 5674, 'chrUn_KI270511v1': 8127, 'chrUn_KI270515v1': 6361, 'chrUn_KI270507v1': 5353, 'chrUn_KI270517v1': 3253, 'chrUn_KI270529v1': 1899, 'chrUn_KI270528v1': 2983, 'chrUn_KI270530v1': 2168, 'chrUn_KI270539v1': 993, 'chrUn_KI270538v1': 91309, 'chrUn_KI270544v1': 1202, 'chrUn_KI270548v1': 1599, 'chrUn_KI270583v1': 1400, 'chrUn_KI270587v1': 2969, 'chrUn_KI270580v1': 1553, 'chrUn_KI270581v1': 7046, 'chrUn_KI270579v1': 31033, 'chrUn_KI270589v1': 44474, 'chrUn_KI270590v1': 4685, 'chrUn_KI270584v1': 4513, 'chrUn_KI270582v1': 6504, 'chrUn_KI270588v1': 6158, 'chrUn_KI270593v1': 3041, 'chrUn_KI270591v1': 5796, 'chrUn_KI270330v1': 1652, 'chrUn_KI270329v1': 1040, 'chrUn_KI270334v1': 1368, 'chrUn_KI270333v1': 2699, 'chrUn_KI270335v1': 1048, 'chrUn_KI270338v1': 1428, 'chrUn_KI270340v1': 1428, 'chrUn_KI270336v1': 1026, 'chrUn_KI270337v1': 1121, 'chrUn_KI270363v1': 1803, 'chrUn_KI270364v1': 2855, 'chrUn_KI270362v1': 3530, 'chrUn_KI270366v1': 8320, 'chrUn_KI270378v1': 1048, 'chrUn_KI270379v1': 1045, 'chrUn_KI270389v1': 1298, 'chrUn_KI270390v1': 2387, 'chrUn_KI270387v1': 1537, 'chrUn_KI270395v1': 1143, 'chrUn_KI270396v1': 1880, 'chrUn_KI270388v1': 1216, 'chrUn_KI270394v1': 970, 'chrUn_KI270386v1': 1788, 'chrUn_KI270391v1': 1484, 'chrUn_KI270383v1': 1750, 'chrUn_KI270393v1': 1308, 'chrUn_KI270384v1': 1658, 'chrUn_KI270392v1': 971, 'chrUn_KI270381v1': 1930, 'chrUn_KI270385v1': 990, 'chrUn_KI270382v1': 4215, 'chrUn_KI270376v1': 1136, 'chrUn_KI270374v1': 2656, 'chrUn_KI270372v1': 1650, 'chrUn_KI270373v1': 1451, 'chrUn_KI270375v1': 2378, 'chrUn_KI270371v1': 2805, 'chrUn_KI270448v1': 7992, 'chrUn_KI270521v1': 7642, 'chrUn_GL000195v1': 182896, 'chrUn_GL000219v1': 179198, 'chrUn_GL000220v1': 161802, 'chrUn_GL000224v1': 179693, 'chrUn_KI270741v1': 157432, 'chrUn_GL000226v1': 15008, 'chrUn_GL000213v1': 164239, 'chrUn_KI270743v1': 210658, 'chrUn_KI270744v1': 168472, 'chrUn_KI270745v1': 41891, 'chrUn_KI270746v1': 66486, 'chrUn_KI270747v1': 198735, 'chrUn_KI270748v1': 93321, 'chrUn_KI270749v1': 158759, 'chrUn_KI270750v1': 148850, 'chrUn_KI270751v1': 150742, 'chrUn_KI270752v1': 27745, 'chrUn_KI270753v1': 62944, 'chrUn_KI270754v1': 40191, 'chrUn_KI270755v1': 36723, 'chrUn_KI270756v1': 79590, 'chrUn_KI270757v1': 71251, 'chrUn_GL000214v1': 137718, 'chrUn_KI270742v1': 186739, 'chrUn_GL000216v2': 176608, 'chrUn_GL000218v1': 161147, 'chrEBV': 171823}\n", + "\tContig chr17\n", + "16 total jobs\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 2C1C6G3A1G4G47\n", + "CIGAR tag 28S70M\n", + "is_reverse True\n", + "is_read1 True\n", + "is_read2 False\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse False\n", + "read id VH01429:22:AACFJ5NHV:2:2414:21053:15521\n", + "VH01429:22:AACFJ5NHV:2:2414:21053:15521\t83\t#16\t3665539\t255\t28S70M\t#16\t3665452\t-157\tCACAATAAGAGCCTATTTTGCTTCCTTAAAGGTGTGAAGTAAATTAATCATAAAAAGAAAGAAGCCAAAGAGAAAGGTACCTGGGTTCAACTAAAGCA\tarray('B', [26, 34, 34, 12, 12, 12, 26, 34, 34, 12, 34, 34, 12, 12, 26, 26, 12, 34, 12, 34, 12, 34, 34, 34, 12, 34, 12, 34, 34, 26, 12, 26, 34, 12, 34, 12, 34, 12, 26, 34, 26, 12, 34, 12, 34, 12, 12, 12, 12, 12, 12, 34, 34, 34, 34, 12, 12, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 12])\t[('MD', '2C1C6G3A1G4G47'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 6), ('AS', 151)]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 2C1C6G3A1G4G47\n", + "CIGAR string 28S70M\n", + "Reference seq: AACGCGTGAAGGAAAATGATCAGAAAAAGAAAGAAGCCAAAGAGAAAGGTACCTGGGTTCAACTAAAGCA\n", + "Aligned seq: CACAATAAGAGCCTATTTTGCTTCCTTAAAGGTGTGAAGTAAATTAATCATAAAAAGAAAGAAGCCAAAGAGAAAGGTACCTGGGTTCAACTAAAGCA\n", + "Qualities: array('B', [26, 34, 34, 12, 12, 12, 26, 34, 34, 12, 34, 34, 12, 12, 26, 26, 12, 34, 12, 34, 12, 34, 34, 34, 12, 34, 12, 34, 34, 26, 12, 26, 34, 12, 34, 12, 34, 12, 26, 34, 26, 12, 34, 12, 34, 12, 12, 12, 12, 12, 12, 34, 34, 34, 34, 12, 12, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 12])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(4, 28), (0, 70)]\n", + "Aligned sequence before clipping (if needed):\n", + " CACAATAAGAGCCTATTTTGCTTCCTTAAAGGTGTGAAGTAAATTAATCATAAAAAGAAAGAAGCCAAAGAGAAAGGTACCTGGGTTCAACTAAAGCA\n", + "Qualities before clipping:\n", + " array('B', [26, 34, 34, 12, 12, 12, 26, 34, 34, 12, 34, 34, 12, 12, 26, 26, 12, 34, 12, 34, 12, 34, 34, 34, 12, 34, 12, 34, 34, 26, 12, 26, 34, 12, 34, 12, 34, 12, 26, 34, 26, 12, 34, 12, 34, 12, 12, 12, 12, 12, 12, 34, 34, 34, 34, 12, 12, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 12])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 70)]\n", + "Aligned sequence after clipping (if needed):\n", + " AAGGTGTGAAGTAAATTAATCATAAAAAGAAAGAAGCCAAAGAGAAAGGTACCTGGGTTCAACTAAAGCA\n", + "Qualities after clipping:\n", + " array('B', [34, 26, 12, 26, 34, 12, 34, 12, 34, 12, 26, 34, 26, 12, 34, 12, 34, 12, 12, 12, 12, 12, 12, 34, 34, 34, 34, 12, 12, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 26, 34, 34, 34, 34, 34, 34, 34, 12])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['2', '1', '6', '3', '1', '4', '47']\n", + "[2, 4, 11, 15, 17, 22, 70]\n", + "Indicated reference seq:\n", + " aaCgCgtgaagGaaaAtGatcaGaaaaagaaagaagccaaagagaaaggtacctgggttcaactaaagca\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " aaCgCgtgaagGaaaAtGatcaGaaaaagaaagaagccaaagagaaaggtacctgggttcaactaaagca\n", + "Fixed aligned seq:\n", + " AAGGTGTGAAGTAAATTAATCATAAAAAGAAAGAAGCCAAAGAGAAAGGTACCTGGGTTCAACTAAAGCA\n", + "Finalized fixed aligned seq:\n", + " aaGgTgtgaagTaaaTtAatcaTaaaaagaaagaagccaaagagaaaggtacctgggttcaactaaagca\n", + "Indicated qualities:\n", + " 34261226341234123412263426123412341212121212123434343412123434341234343434343434343434343434343434343434343434343434343426263434343434343412\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G', 'T', 'T', 'T', 'A', 'T']\n", + "ref bases ['C', 'C', 'G', 'A', 'G', 'G']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G', 'T', 'T', 'T', 'A', 'T'], ref bases: ['C', 'C', 'G', 'A', 'G', 'G']\n", + "Getting info: G C 12 3\n", + "Getting info: T C 34 5\n", + "Getting info: T G 34 12\n", + "Getting info: T A 12 16\n", + "Getting info: A G 12 18\n", + "Getting info: T G 12 23\n", + "chr17:000, total reads: 1, counts_df: chr17\n", + "edited 1\n", + "total_edits 6\n", + "chr17:001, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:002, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:003, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:005, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:007, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:008, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "Reads processed:\t1\n", + "Time to process reads in min:\t0.1499\n", + "Read Summary:\n", + "edited 1\n", + "total_edits 6\n", + "dtype: int64\n", + "\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Calculating coverage at edited sites, minimum read quality is 0...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "\tsplit chr17_000_0_5203591, 0/16...\n", + "\tsplit chr17_010_52035910_57239501, 10/16...\n", + "Done grouping! Concatenating ...\n", + "Done concatenating!\n", + "edit_info_grouped_per_contig_combined dict_keys(['chr17_000_0_5203591', 'chr17_001_5203591_10407182', 'chr17_002_10407182_15610773', 'chr17_003_15610773_20814364', 'chr17_004_20814364_26017955', 'chr17_005_26017955_31221546', 'chr17_006_31221546_36425137', 'chr17_007_36425137_41628728', 'chr17_008_41628728_46832319', 'chr17_009_46832319_52035910', 'chr17_010_52035910_57239501', 'chr17_011_57239501_62443092', 'chr17_012_62443092_67646683', 'chr17_013_67646683_72850274', 'chr17_014_72850274_78053865', 'chr17_015_78053865_83257456'])\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|██████████| 16/16 [00:08<00:00, 1.83it/s]\n", + "100%|██████████| 16/16 [00:07<00:00, 2.09it/s]\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Concatenating results...\n", + "Done concatenating.\n", + "original 6\n", + "filtered 6\n", + "dtype: int64\n", + "Total time to calculate coverage: 0.132 minutes\n", + "Filtering..\n", + "\tNumber of edits after filtering:\n", + "\t6\n", + "\tNumber of unique edit sites:\n", + "\t6\n", + "Writing sites...\n", + "\n", + "Adding strand-specific conversion...\n", + "\n", + "6 sites being converted to SAILOR format...\n", + "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", + "1 final deduplicated SAILOR-formatted sites\n", + "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed...\n", + "Current memory usage 21.405846MB; Peak: 22.51619MB\n", + "Time elapsed: 17.81s\n", + "-------------------------------\n", + "Deleting intermediate files...\n", + "-------------------------------\n", + "++++++\n", + "Done!\n", + "++++++\n", "pair_test\n", "Removing old files...\n", "Running tests...\n", @@ -121,7 +2102,7 @@ "\tContig 18\n", "1 total jobs\n", "Reads processed:\t10\n", - "Time to process reads in min:\t0.01962\n", + "Time to process reads in min:\t0.0216\n", "Read Summary:\n", "edited 6\n", "no_edits 2\n", @@ -141,7 +2122,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 1/1 [00:01<00:00, 1.14s/it]\n", + "100%|██████████| 1/1 [00:01<00:00, 1.26s/it]\n", "100%|██████████| 1/1 [00:01<00:00, 1.19s/it]\n" ] }, @@ -168,8 +2149,8 @@ "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", "2 final deduplicated SAILOR-formatted sites\n", "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/cellranger-GRCh38-3.0.0.annotation.genes.bed...\n", - "Current memory usage 21.320465MB; Peak: 22.430359MB\n", - "Time elapsed: 3.12s\n", + "Current memory usage 21.319782MB; Peak: 22.42987MB\n", + "Time elapsed: 3.36s\n", "++++++\n", "Done!\n", "++++++\n" @@ -190,8 +2171,7 @@ "export MARINE=/tscc/projects/ps-yeolab3/ekofman/sailor2/\n", "export mypython=/tscc/nfs/home/ekofman/miniconda3/envs/marine_environment/bin/python\n", "\n", - "#for t in \"unstranded_pair_test\" \"F1R2_pair_test-single_end_mode\" \"F1R2_pair_test\" \"F2R1_end_second_in_pair_test\" \"same_pos_dif_reads_test\" \"tax1bp3_chr17_3665556_read_test\" \"pair_test\"\n", - "for t in \"pair_test\"\n", + "for t in \"unstranded_pair_test\" \"F1R2_pair_test-single_end_mode\" \"F1R2_pair_test\" \"F2R1_end_second_in_pair_test\" \"same_pos_dif_reads_test\" \"tax1bp3_chr17_3665556_read_test\" \"pair_test\"\n", "do\n", " echo $t\n", " echo \"Removing old files...\"\n", @@ -206,7 +2186,7 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": 20, "id": "57192b28-b498-4f81-bdcd-0d4d14f644ff", "metadata": { "scrolled": true @@ -267,7 +2247,7 @@ "\tContig 9\n", "16 total jobs\n", "Reads processed:\t31\n", - "Time to process reads in min:\t0.1486\n", + "Time to process reads in min:\t0.15101\n", "Read Summary:\n", "edited 31\n", "total_edits 99\n", @@ -286,15 +2266,14 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 16/16 [00:08<00:00, 1.85it/s]\n" + "100%|██████████| 16/16 [00:08<00:00, 1.82it/s]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "\t4 suffixes\n", - "Total time to concat and write bams: 0.143 minutes\n", + "Total time to concat and write bams: 0.141 minutes\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -308,42 +2287,38 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 1/1 [00:08<00:00, 8.33s/it]\n", - " 0%| | 0/4 [00:07\n", - " run(bam_filepath, \n", - " File \"/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py\", line 347, in run\n", - " results, total_time, total_seconds_for_contig_df = coverage_processing(output_folder, \n", - " File \"/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py\", line 132, in coverage_processing\n", - " results, total_time, total_seconds_for_contig = run_coverage_calculator(edit_info_grouped_per_contig_combined, output_folder,\n", - " File \"/tscc/projects/ps-yeolab3/ekofman/sailor2/src/core.py\", line 327, in run_coverage_calculator\n", - " for _ in p.imap_unordered(get_coverage_wrapper, coverage_counting_job_params):\n", - " File \"/tscc/nfs/home/ekofman/miniconda3/envs/marine_environment/lib/python3.8/multiprocessing/pool.py\", line 868, in next\n", - " raise value\n", - "AttributeError: 'DataFrameGroupBy' object has no attribute 'coverage'\n" + "100%|██████████| 1/1 [00:08<00:00, 8.23s/it]\n", + "100%|██████████| 4/4 [00:07<00:00, 2.00s/it]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ + "Concatenating results...\n", + "Done concatenating.\n", + "original 99\n", + "filtered 99\n", + "dtype: int64\n", + "Total time to calculate coverage: 0.138 minutes\n", + "Filtering..\n", + "\tNumber of edits after filtering:\n", + "\t99\n", + "\tNumber of unique edit sites:\n", + "\t73\n", + "Writing sites...\n", + "\n", + "Adding strand-specific conversion...\n", + "\n", + "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/cellranger-mm10-3.0.0.annotation.genes.bed...\n", + "Current memory usage 21.632608MB; Peak: 22.739356MB\n", + "Time elapsed: 26.69s\n", + "-------------------------------\n", + "Deleting intermediate files...\n", + "-------------------------------\n", + "++++++\n", + "Done!\n", + "++++++\n", "long_read_sc_test\n", "Removing old files...\n", "Running old tests...\n", @@ -393,7 +2368,7 @@ "\tContig 6\n", "4 total jobs\n", "Reads processed:\t13\n", - "Time to process reads in min:\t0.14613\n", + "Time to process reads in min:\t0.14743\n", "Read Summary:\n", "edited 3\n", "no_edits 10\n", @@ -413,14 +2388,15 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 4/4 [00:08<00:00, 2.12s/it]\n" + "100%|██████████| 4/4 [00:08<00:00, 2.14s/it]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Total time to concat and write bams: 0.331 minutes\n", + "\t400 suffixes\n", + "Total time to concat and write bams: 0.337 minutes\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -433,50 +2409,38 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 1/1 [00:19<00:00, 19.47s/it]\n", - " 0%| | 0/400 [00:07\n", - " run(bam_filepath, \n", - " File \"/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py\", line 347, in run\n", - " results, total_time, total_seconds_for_contig_df = coverage_processing(output_folder, \n", - " File \"/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py\", line 132, in coverage_processing\n", - " results, total_time, total_seconds_for_contig = run_coverage_calculator(edit_info_grouped_per_contig_combined, output_folder,\n", - " File \"/tscc/projects/ps-yeolab3/ekofman/sailor2/src/core.py\", line 327, in run_coverage_calculator\n", - " for _ in p.imap_unordered(get_coverage_wrapper, coverage_counting_job_params):\n", - " File \"/tscc/nfs/home/ekofman/miniconda3/envs/marine_environment/lib/python3.8/multiprocessing/pool.py\", line 868, in next\n", - " raise value\n", - "AttributeError: 'DataFrameGroupBy' object has no attribute 'coverage'\n" + "100%|██████████| 1/1 [00:19<00:00, 19.88s/it]\n", + "100%|██████████| 400/400 [00:10<00:00, 36.66it/s] \n" ] }, { - "ename": "CalledProcessError", - "evalue": "Command 'b'\\npwd\\necho \"Running\"\\n\\ncd ..\\npwd\\n\\nexport MARINE=/tscc/projects/ps-yeolab3/ekofman/sailor2/\\nexport mypython=/tscc/nfs/home/ekofman/miniconda3/envs/marine_environment/bin/python\\n\\ntests_folder=\"tests/singlecell_tests/\"\\nfor t in \"only_5_cells_test\" \"long_read_sc_test\"\\n\\ndo\\n echo $t\\n echo \"Removing old files...\"\\n rm $tests_folder$t/* -r\\n\\n echo \"Running old tests...\"\\n bash tests/singlecell_tests/scripts/$t.sh $mypython\\n \\ndone\\n'' returned non-zero exit status 1.", - "output_type": "error", - "traceback": [ - "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", - "\u001b[0;31mCalledProcessError\u001b[0m Traceback (most recent call last)", - "Cell \u001b[0;32mIn[8], line 1\u001b[0m\n\u001b[0;32m----> 1\u001b[0m \u001b[43mget_ipython\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mrun_cell_magic\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;124;43mbash\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mpwd\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mecho \u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mRunning\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mcd ..\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mpwd\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mexport MARINE=/tscc/projects/ps-yeolab3/ekofman/sailor2/\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mexport mypython=/tscc/nfs/home/ekofman/miniconda3/envs/marine_environment/bin/python\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mtests_folder=\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mtests/singlecell_tests/\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mfor t in \u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43monly_5_cells_test\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43m \u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mlong_read_sc_test\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mdo\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m echo $t\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m echo \u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mRemoving old files...\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m rm $tests_folder$t/* -r\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m echo \u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mRunning old tests...\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m bash tests/singlecell_tests/scripts/$t.sh $mypython\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m \u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43mdone\u001b[39;49m\u001b[38;5;130;43;01m\\n\u001b[39;49;00m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m)\u001b[49m\n", - "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/IPython/core/interactiveshell.py:2478\u001b[0m, in \u001b[0;36mInteractiveShell.run_cell_magic\u001b[0;34m(self, magic_name, line, cell)\u001b[0m\n\u001b[1;32m 2476\u001b[0m \u001b[38;5;28;01mwith\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mbuiltin_trap:\n\u001b[1;32m 2477\u001b[0m args \u001b[38;5;241m=\u001b[39m (magic_arg_s, cell)\n\u001b[0;32m-> 2478\u001b[0m result \u001b[38;5;241m=\u001b[39m \u001b[43mfn\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43margs\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43mkwargs\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 2480\u001b[0m \u001b[38;5;66;03m# The code below prevents the output from being displayed\u001b[39;00m\n\u001b[1;32m 2481\u001b[0m \u001b[38;5;66;03m# when using magics with decodator @output_can_be_silenced\u001b[39;00m\n\u001b[1;32m 2482\u001b[0m \u001b[38;5;66;03m# when the last Python token in the expression is a ';'.\u001b[39;00m\n\u001b[1;32m 2483\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;28mgetattr\u001b[39m(fn, magic\u001b[38;5;241m.\u001b[39mMAGIC_OUTPUT_CAN_BE_SILENCED, \u001b[38;5;28;01mFalse\u001b[39;00m):\n", - "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/IPython/core/magics/script.py:153\u001b[0m, in \u001b[0;36mScriptMagics._make_script_magic..named_script_magic\u001b[0;34m(line, cell)\u001b[0m\n\u001b[1;32m 151\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m 152\u001b[0m line \u001b[38;5;241m=\u001b[39m script\n\u001b[0;32m--> 153\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mshebang\u001b[49m\u001b[43m(\u001b[49m\u001b[43mline\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mcell\u001b[49m\u001b[43m)\u001b[49m\n", - "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/IPython/core/magics/script.py:305\u001b[0m, in \u001b[0;36mScriptMagics.shebang\u001b[0;34m(self, line, cell)\u001b[0m\n\u001b[1;32m 300\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m args\u001b[38;5;241m.\u001b[39mraise_error \u001b[38;5;129;01mand\u001b[39;00m p\u001b[38;5;241m.\u001b[39mreturncode \u001b[38;5;241m!=\u001b[39m \u001b[38;5;241m0\u001b[39m:\n\u001b[1;32m 301\u001b[0m \u001b[38;5;66;03m# If we get here and p.returncode is still None, we must have\u001b[39;00m\n\u001b[1;32m 302\u001b[0m \u001b[38;5;66;03m# killed it but not yet seen its return code. We don't wait for it,\u001b[39;00m\n\u001b[1;32m 303\u001b[0m \u001b[38;5;66;03m# in case it's stuck in uninterruptible sleep. -9 = SIGKILL\u001b[39;00m\n\u001b[1;32m 304\u001b[0m rc \u001b[38;5;241m=\u001b[39m p\u001b[38;5;241m.\u001b[39mreturncode \u001b[38;5;129;01mor\u001b[39;00m \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m9\u001b[39m\n\u001b[0;32m--> 305\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m CalledProcessError(rc, cell)\n", - "\u001b[0;31mCalledProcessError\u001b[0m: Command 'b'\\npwd\\necho \"Running\"\\n\\ncd ..\\npwd\\n\\nexport MARINE=/tscc/projects/ps-yeolab3/ekofman/sailor2/\\nexport mypython=/tscc/nfs/home/ekofman/miniconda3/envs/marine_environment/bin/python\\n\\ntests_folder=\"tests/singlecell_tests/\"\\nfor t in \"only_5_cells_test\" \"long_read_sc_test\"\\n\\ndo\\n echo $t\\n echo \"Removing old files...\"\\n rm $tests_folder$t/* -r\\n\\n echo \"Running old tests...\"\\n bash tests/singlecell_tests/scripts/$t.sh $mypython\\n \\ndone\\n'' returned non-zero exit status 1." + "name": "stdout", + "output_type": "stream", + "text": [ + "Concatenating results...\n", + "Done concatenating.\n", + "original 3\n", + "filtered 3\n", + "dtype: int64\n", + "Total time to calculate coverage: 0.187 minutes\n", + "Filtering..\n", + "\tNumber of edits after filtering:\n", + "\t3\n", + "\tNumber of unique edit sites:\n", + "\t3\n", + "Writing sites...\n", + "\n", + "Adding strand-specific conversion...\n", + "\n", + "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/cellranger-mm10-3.0.0.annotation.genes.bed...\n", + "Current memory usage 21.511415MB; Peak: 22.623014MB\n", + "Time elapsed: 41.90s\n", + "-------------------------------\n", + "Deleting intermediate files...\n", + "-------------------------------\n", + "++++++\n", + "Done!\n", + "++++++\n" ] } ], @@ -516,7 +2480,7 @@ }, { "cell_type": "code", - "execution_count": 11, + "execution_count": 22, "id": "f5c3ed3e-13dd-4399-924e-3d1ac17ce387", "metadata": {}, "outputs": [ @@ -539,25 +2503,22 @@ "\t >>> pair_test passed! <<<\n", "\n", "\tExpecting: {'contig': '18', 'position': 49567494, 'count': 2, 'coverage': 2, 'num_rows': 1, 'strand_conversion': 'C>T', 'strand': '+', 'feature_name': 'LIPG', 'feature_strand': '+'}\n", - "Exception: count was 3\n", "\n", - "\t ~~~ pair_test FAILED! ~~~\n", + "\t >>> pair_test passed! <<<\n", "\n", "\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Checking results for F1R2_pair_test\n", "\tExpecting: {'contig': 'chr17', 'position': 43044352, 'count': 1, 'coverage': 1, 'conversion': 'G>A', 'num_rows': 1, 'strand_conversion': 'C>T', 'strand': '-', 'feature_name': 'BRCA1', 'feature_strand': '-'}\n", - "Exception: count was 2\n", "\n", - "\t ~~~ F1R2_pair_test FAILED! ~~~\n", + "\t >>> F1R2_pair_test passed! <<<\n", "\n", "\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Checking results for F1R2_pair_test-single_end_mode\n", "\tExpecting: {'contig': 'chr17', 'position': 43044352, 'count': 1, 'coverage': 2, 'conversion': 'G>A', 'num_rows': 1, 'strand_conversion': 'C>T', 'strand': '-', 'feature_name': 'BRCA1', 'feature_strand': '-'}\n", - "Exception: count was 2\n", "\n", - "\t ~~~ F1R2_pair_test-single_end_mode FAILED! ~~~\n", + "\t >>> F1R2_pair_test-single_end_mode passed! <<<\n", "\n", "\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -570,9 +2531,8 @@ "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Checking results for same_pos_dif_reads_test\n", "\tExpecting: {'contig': 'chr17', 'position': 83199872, 'count': 9, 'coverage': 9, 'conversion': 'C>G', 'strand_conversion': 'C>G', 'strand': '+', 'feature_name': 'AC139099.2'}\n", - "Exception: count was 14\n", "\n", - "\t ~~~ same_pos_dif_reads_test FAILED! ~~~\n", + "\t >>> same_pos_dif_reads_test passed! <<<\n", "\n", "\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -599,23 +2559,19 @@ "\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Checking results for long_read_sc_test\n", - "\tExpecting: {'contig': '6', 'barcode': 'ENSMUST00000203816-AACGTGTTGGAGAGGG-16-G', 'position': 115807969, 'num_rows': 1, 'count': 1, 'coverage': 1, 'conversion': 'A>C', 'strand_conversion': 'T>G', 'strand': '-', 'feature_name': 'Rpl32'}\n" - ] - }, - { - "ename": "FileNotFoundError", - "evalue": "[Errno 2] No such file or directory: 'singlecell_tests/long_read_sc_test/final_filtered_site_info_annotated.tsv'", - "output_type": "error", - "traceback": [ - "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", - "\u001b[0;31mFileNotFoundError\u001b[0m Traceback (most recent call last)", - "Cell \u001b[0;32mIn[11], line 210\u001b[0m\n\u001b[1;32m 207\u001b[0m position \u001b[38;5;241m=\u001b[39m expectations\u001b[38;5;241m.\u001b[39mget(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mposition\u001b[39m\u001b[38;5;124m\"\u001b[39m)\n\u001b[1;32m 209\u001b[0m final_filtered_site_info_annotated \u001b[38;5;241m=\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;132;01m{}\u001b[39;00m\u001b[38;5;124m/\u001b[39m\u001b[38;5;132;01m{}\u001b[39;00m\u001b[38;5;124m/final_filtered_site_info_annotated.tsv\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;241m.\u001b[39mformat(folder, test_name)\n\u001b[0;32m--> 210\u001b[0m final_filtered_site_info_annotated_df \u001b[38;5;241m=\u001b[39m \u001b[43mpd\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mread_csv\u001b[49m\u001b[43m(\u001b[49m\u001b[43mfinal_filtered_site_info_annotated\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43msep\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;130;43;01m\\t\u001b[39;49;00m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mindex_col\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;241;43m0\u001b[39;49m\u001b[43m)\u001b[49m\n\u001b[1;32m 212\u001b[0m row_of_interest \u001b[38;5;241m=\u001b[39m final_filtered_site_info_annotated_df[\n\u001b[1;32m 213\u001b[0m (final_filtered_site_info_annotated_df[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mposition\u001b[39m\u001b[38;5;124m'\u001b[39m] \u001b[38;5;241m==\u001b[39m position) \u001b[38;5;241m&\u001b[39m\\\n\u001b[1;32m 214\u001b[0m (final_filtered_site_info_annotated_df[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mcontig\u001b[39m\u001b[38;5;124m'\u001b[39m]\u001b[38;5;241m.\u001b[39mastype(\u001b[38;5;28mstr\u001b[39m) \u001b[38;5;241m==\u001b[39m contig)\n\u001b[1;32m 215\u001b[0m ]\n\u001b[1;32m 218\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m barcode:\n", - "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/pandas/io/parsers/readers.py:912\u001b[0m, in \u001b[0;36mread_csv\u001b[0;34m(filepath_or_buffer, sep, delimiter, header, names, index_col, usecols, dtype, engine, converters, true_values, false_values, skipinitialspace, skiprows, skipfooter, nrows, na_values, keep_default_na, na_filter, verbose, skip_blank_lines, parse_dates, infer_datetime_format, keep_date_col, date_parser, date_format, dayfirst, cache_dates, iterator, chunksize, compression, thousands, decimal, lineterminator, quotechar, quoting, doublequote, escapechar, comment, encoding, encoding_errors, dialect, on_bad_lines, delim_whitespace, low_memory, memory_map, float_precision, storage_options, dtype_backend)\u001b[0m\n\u001b[1;32m 899\u001b[0m kwds_defaults \u001b[38;5;241m=\u001b[39m _refine_defaults_read(\n\u001b[1;32m 900\u001b[0m dialect,\n\u001b[1;32m 901\u001b[0m delimiter,\n\u001b[0;32m (...)\u001b[0m\n\u001b[1;32m 908\u001b[0m dtype_backend\u001b[38;5;241m=\u001b[39mdtype_backend,\n\u001b[1;32m 909\u001b[0m )\n\u001b[1;32m 910\u001b[0m kwds\u001b[38;5;241m.\u001b[39mupdate(kwds_defaults)\n\u001b[0;32m--> 912\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43m_read\u001b[49m\u001b[43m(\u001b[49m\u001b[43mfilepath_or_buffer\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mkwds\u001b[49m\u001b[43m)\u001b[49m\n", - "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/pandas/io/parsers/readers.py:577\u001b[0m, in \u001b[0;36m_read\u001b[0;34m(filepath_or_buffer, kwds)\u001b[0m\n\u001b[1;32m 574\u001b[0m _validate_names(kwds\u001b[38;5;241m.\u001b[39mget(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mnames\u001b[39m\u001b[38;5;124m\"\u001b[39m, \u001b[38;5;28;01mNone\u001b[39;00m))\n\u001b[1;32m 576\u001b[0m \u001b[38;5;66;03m# Create the parser.\u001b[39;00m\n\u001b[0;32m--> 577\u001b[0m parser \u001b[38;5;241m=\u001b[39m \u001b[43mTextFileReader\u001b[49m\u001b[43m(\u001b[49m\u001b[43mfilepath_or_buffer\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43mkwds\u001b[49m\u001b[43m)\u001b[49m\n\u001b[1;32m 579\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m chunksize \u001b[38;5;129;01mor\u001b[39;00m iterator:\n\u001b[1;32m 580\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m parser\n", - "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/pandas/io/parsers/readers.py:1407\u001b[0m, in \u001b[0;36mTextFileReader.__init__\u001b[0;34m(self, f, engine, **kwds)\u001b[0m\n\u001b[1;32m 1404\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39moptions[\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mhas_index_names\u001b[39m\u001b[38;5;124m\"\u001b[39m] \u001b[38;5;241m=\u001b[39m kwds[\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mhas_index_names\u001b[39m\u001b[38;5;124m\"\u001b[39m]\n\u001b[1;32m 1406\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mhandles: IOHandles \u001b[38;5;241m|\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m\n\u001b[0;32m-> 1407\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_engine \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43m_make_engine\u001b[49m\u001b[43m(\u001b[49m\u001b[43mf\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mengine\u001b[49m\u001b[43m)\u001b[49m\n", - "File \u001b[0;32m~/miniconda3/envs/marine_environment/lib/python3.8/site-packages/pandas/io/parsers/readers.py:1661\u001b[0m, in \u001b[0;36mTextFileReader._make_engine\u001b[0;34m(self, f, engine)\u001b[0m\n\u001b[1;32m 1659\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mb\u001b[39m\u001b[38;5;124m\"\u001b[39m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;129;01min\u001b[39;00m mode:\n\u001b[1;32m 1660\u001b[0m mode \u001b[38;5;241m+\u001b[39m\u001b[38;5;241m=\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mb\u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[0;32m-> 1661\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mhandles \u001b[38;5;241m=\u001b[39m \u001b[43mget_handle\u001b[49m\u001b[43m(\u001b[49m\n\u001b[1;32m 1662\u001b[0m \u001b[43m \u001b[49m\u001b[43mf\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1663\u001b[0m \u001b[43m \u001b[49m\u001b[43mmode\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1664\u001b[0m \u001b[43m \u001b[49m\u001b[43mencoding\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43moptions\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mget\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mencoding\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;28;43;01mNone\u001b[39;49;00m\u001b[43m)\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1665\u001b[0m \u001b[43m \u001b[49m\u001b[43mcompression\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43moptions\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mget\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mcompression\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;28;43;01mNone\u001b[39;49;00m\u001b[43m)\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1666\u001b[0m \u001b[43m \u001b[49m\u001b[43mmemory_map\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43moptions\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mget\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[38;5;124;43mmemory_map\u001b[39;49m\u001b[38;5;124;43m\"\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;28;43;01mFalse\u001b[39;49;00m\u001b[43m)\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1667\u001b[0m \u001b[43m \u001b[49m\u001b[43mis_text\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mis_text\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 1668\u001b[0m \u001b[43m 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Check whether the filename is to be opened in binary mode.\u001b[39;00m\n\u001b[1;32m 856\u001b[0m \u001b[38;5;66;03m# Binary mode does not support 'encoding' and 'newline'.\u001b[39;00m\n\u001b[1;32m 857\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m ioargs\u001b[38;5;241m.\u001b[39mencoding \u001b[38;5;129;01mand\u001b[39;00m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mb\u001b[39m\u001b[38;5;124m\"\u001b[39m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;129;01min\u001b[39;00m ioargs\u001b[38;5;241m.\u001b[39mmode:\n\u001b[1;32m 858\u001b[0m \u001b[38;5;66;03m# Encoding\u001b[39;00m\n\u001b[0;32m--> 859\u001b[0m handle \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;43mopen\u001b[39;49m\u001b[43m(\u001b[49m\n\u001b[1;32m 860\u001b[0m \u001b[43m \u001b[49m\u001b[43mhandle\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 861\u001b[0m \u001b[43m \u001b[49m\u001b[43mioargs\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mmode\u001b[49m\u001b[43m,\u001b[49m\n\u001b[1;32m 862\u001b[0m \u001b[43m 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'singlecell_tests/long_read_sc_test/final_filtered_site_info_annotated.tsv'" + "\tExpecting: {'contig': '6', 'barcode': 'ENSMUST00000203816-AACGTGTTGGAGAGGG-16-G', 'position': 115807969, 'num_rows': 1, 'count': 1, 'coverage': 1, 'conversion': 'A>C', 'strand_conversion': 'T>G', 'strand': '-', 'feature_name': 'Rpl32'}\n", + "\n", + "\t >>> long_read_sc_test passed! <<<\n", + "\n", + "\tExpecting: {'contig': '6', 'barcode': 'ENSMUST00000081840-AAGTCGTACCAGGCTC-40-C', 'position': 115805653, 'num_rows': 1, 'count': 1, 'coverage': 1, 'conversion': 'G>A', 'strand_conversion': 'C>T', 'strand': '-', 'feature_name': 'Rpl32'}\n", + "\n", + "\t >>> long_read_sc_test passed! <<<\n", + "\n", + "\tExpecting: {'contig': '6', 'barcode': 'ENSMUST00000081840-AACGTGTTGGAGAGGG-40-G', 'position': 115807015, 'num_rows': 1, 'count': 1, 'coverage': 8, 'conversion': 'C>T', 'strand_conversion': 'G>A', 'strand': '-', 'feature_name': 'Rpl32'}\n", + "\n", + "\t >>> long_read_sc_test passed! <<<\n", + "\n", + "There were 0 failures\n" ] } ], From 729e1bca281f397e1d03d50fb0a639883ee9169e Mon Sep 17 00:00:00 2001 From: Eric Kofman Date: Mon, 12 Aug 2024 14:44:38 -0700 Subject: [PATCH 09/10] process only some contigs at a time --- marine.py | 97 ++- src/core.py | 2 +- tests/integration_tests.ipynb | 572 +++++++++++++----- .../final_filtered_site_info.tsv | 16 +- 4 files changed, 484 insertions(+), 203 deletions(-) diff --git a/marine.py b/marine.py index 1313353..77d3104 100755 --- a/marine.py +++ b/marine.py @@ -1,5 +1,6 @@ #!/usr/bin/env python import argparse +from collections import defaultdict from glob import glob from multiprocessing import Pool import multiprocessing @@ -16,6 +17,7 @@ from tqdm import tqdm import tracemalloc from matplotlib import pyplot as plt +import math sys.path.append(os.path.join(os.path.dirname(os.path.realpath(__file__)), 'src/')) @@ -298,38 +300,77 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in pretty_print("Identifying edits", style="~") # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - overall_label_to_list_of_contents, results, total_seconds_for_reads_df, total_reads_processed, counts_summary_df = edit_finder( - bam_filepath, - output_folder, - strandedness, - barcode_tag, - barcode_whitelist, - contigs, - num_intervals_per_contig, - verbose, - cores=cores, - min_read_quality=min_read_quality - ) - - total_seconds_for_reads_df.to_csv("{}/edit_finder_timing.tsv".format(logging_folder), sep='\t') + if len(contigs) == 0: + broken_up_contigs = [[]] + else: + broken_up_contigs = [] + + if barcode_whitelist_file: + # For single cell sequencing we will only process this many contigs at a time + num_per_sublist = 6 + else: + # For bulk sequencing we will just process all contigs + num_per_sublist = len(contigs) + + i_options = range((math.ceil(len(contigs)/num_per_sublist)) + 1) + #print('i_options', i_options) + for i in i_options: + contig_sublist = [] + j_options = range(i*num_per_sublist, (i*num_per_sublist) + num_per_sublist) + #print('j_options', j_options) + for j in j_options: + if j < len(contigs): + contig_sublist.append(contigs[j]) + + if len(contig_sublist) > 0: + broken_up_contigs.append(contig_sublist) + #print('broken_up_contigs', broken_up_contigs) + - with open('{}/manifest.txt'.format(logging_folder), 'a+') as f: - f.write(f'total_reads_processed\t{total_reads_processed}\n') - for k, v in counts_summary_df.items(): - f.write(f'{k}\t{v}\n') + overall_counts_summary_df = defaultdict(lambda:0) + overall_total_reads_processed = 0 + for subcontig_list in broken_up_contigs: + + overall_label_to_list_of_contents, results, total_seconds_for_reads_df, total_reads_processed, counts_summary_df = edit_finder( + bam_filepath, + output_folder, + strandedness, + barcode_tag, + barcode_whitelist, + subcontig_list, + num_intervals_per_contig, + verbose, + cores=cores, + min_read_quality=min_read_quality + ) + + for k,v in counts_summary_df.items(): + overall_counts_summary_df[k] += v + + overall_total_reads_processed += total_reads_processed + + #total_seconds_for_reads_df.to_csv("{}/edit_finder_timing.tsv".format(logging_folder), sep='\t') + + if barcode_tag: + # Make a subfolder into which the split bams will be placed + # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + pretty_print("Contigs processed\n\n\t{}".format(sorted(list(overall_label_to_list_of_contents.keys())))) + pretty_print("Splitting and reconfiguring BAMs to optimize coverage calculations", style="~") + # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + + total_bam_generation_time, total_seconds_for_bams_df = bam_processing(overall_label_to_list_of_contents, output_folder, barcode_tag=barcode_tag, cores=cores, number_of_expected_bams=number_of_expected_bams, verbose=verbose) + #total_seconds_for_bams_df.to_csv("{}/bam_reconfiguration_timing.tsv".format(logging_folder), sep='\t') + pretty_print("Total time to concat and write bams: {} minutes".format(round(total_bam_generation_time/60, 3))) - if barcode_tag: - # Make a subfolder into which the split bams will be placed - # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - pretty_print("Contigs processed\n\n\t{}".format(sorted(list(overall_label_to_list_of_contents.keys())))) - pretty_print("Splitting and reconfiguring BAMs to optimize coverage calculations", style="~") - # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + print("Deleting overall_label_to_list_of_contents...") + del overall_label_to_list_of_contents - total_bam_generation_time, total_seconds_for_bams_df = bam_processing(overall_label_to_list_of_contents, output_folder, barcode_tag=barcode_tag, cores=cores, number_of_expected_bams=number_of_expected_bams, verbose=verbose) - total_seconds_for_bams_df.to_csv("{}/bam_reconfiguration_timing.tsv".format(logging_folder), sep='\t') - pretty_print("Total time to concat and write bams: {} minutes".format(round(total_bam_generation_time/60, 3))) + + with open('{}/manifest.txt'.format(logging_folder), 'a+') as f: + f.write(f'total_reads_processed\t{overall_total_reads_processed}\n') + for k, v in overall_counts_summary_df.items(): + f.write(f'{k}\t{v}\n') - if not filtering_only and not skip_coverage: # Coverage calculation # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ diff --git a/src/core.py b/src/core.py index 1ef1a8c..ab0cf52 100644 --- a/src/core.py +++ b/src/core.py @@ -44,7 +44,7 @@ def run_edit_identifier(bampath, output_folder, strandedness, barcode_tag="CB", all_counts_summary_dfs = [] overall_count_summary_dict = defaultdict(lambda:0) - multiprocessing.set_start_method('spawn') + #multiprocessing.set_start_method('spawn') with get_context("spawn").Pool(processes=cores, maxtasksperchild=4) as p: max_ = len(edit_finding_jobs) with tqdm(total=max_) as pbar: diff --git a/tests/integration_tests.ipynb b/tests/integration_tests.ipynb index 69f7e86..95ca3ba 100644 --- a/tests/integration_tests.ipynb +++ b/tests/integration_tests.ipynb @@ -2,7 +2,7 @@ "cells": [ { "cell_type": "code", - "execution_count": 1, + "execution_count": 27, "id": "9f2684b1-dbad-45d5-bdb5-b83989bec7dc", "metadata": {}, "outputs": [], @@ -12,7 +12,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": 28, "id": "63b5feff-aa8a-417c-8c93-9b9d74e5dee9", "metadata": {}, "outputs": [], @@ -23,7 +23,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": 29, "id": "f6012705-9d34-4997-8681-c7bbcc4f008b", "metadata": {}, "outputs": [], @@ -60,7 +60,7 @@ }, { "cell_type": "code", - "execution_count": 19, + "execution_count": 31, "id": "ba12c2b8-2ccb-4866-86c8-a2284fd1229f", "metadata": { "scrolled": true @@ -117,17 +117,19 @@ "~~~~~~~~~~~~~~~~~~\n", "Identifying edits\n", "~~~~~~~~~~~~~~~~~~\n", + "broken_up_contigs [[]]\n", "Each contig is being split into 1 subsets...\n", "\tContig Citrine.dna\n", "1 total jobs\n", "Reads processed:\t44\n", - "Time to process reads in min:\t0.02512\n", + "Time to process reads in min:\t0.02895\n", "Read Summary:\n", "edited 25\n", "no_edits 19\n", "total_edits 37\n", "dtype: int64\n", "\n", + "Deleting overall_label_to_list_of_contents...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -140,25 +142,25 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 1/1 [00:01<00:00, 1.47s/it]\n", - "100%|██████████| 1/1 [00:01<00:00, 1.01s/it]\n", - "/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py:448: SettingWithCopyWarning: \n", + "100%|██████████| 1/1 [00:01<00:00, 1.70s/it]\n", + "100%|██████████| 1/1 [00:01<00:00, 1.74s/it]\n", + "/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py:483: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy\n", " sites_for_conversion['edit_fraction'] = sites_for_conversion['count']/sites_for_conversion['coverage']\n", - "/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py:449: SettingWithCopyWarning: \n", + "/tscc/projects/ps-yeolab3/ekofman/sailor2//marine.py:484: SettingWithCopyWarning: \n", "A value is trying to be set on a copy of a slice from a DataFrame.\n", "Try using .loc[row_indexer,col_indexer] = value instead\n", "\n", "See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy\n", " sites_for_conversion['start'] = sites_for_conversion['position'] - 1\n", - "***** WARNING: File /tmp/pybedtools.9on6r3qb.tmp has inconsistent naming convention for record:\n", - "Citrine.dna\t431\t433\tno_barcode_Citrine.dna_432_C_T_+\tC>T\t+\n", + "***** WARNING: File /tmp/pybedtools.96t907wz.tmp has inconsistent naming convention for record:\n", + "Citrine.dna\t436\t438\tno_barcode_Citrine.dna_437_A_G_+\tA>G\t+\n", "\n", - "***** WARNING: File /tmp/pybedtools.9on6r3qb.tmp has inconsistent naming convention for record:\n", - "Citrine.dna\t431\t433\tno_barcode_Citrine.dna_432_C_T_+\tC>T\t+\n", + "***** WARNING: File /tmp/pybedtools.96t907wz.tmp has inconsistent naming convention for record:\n", + "Citrine.dna\t436\t438\tno_barcode_Citrine.dna_437_A_G_+\tA>G\t+\n", "\n" ] }, @@ -171,7 +173,7 @@ "original 37\n", "filtered 37\n", "dtype: int64\n", - "Total time to calculate coverage: 0.017 minutes\n", + "Total time to calculate coverage: 0.029 minutes\n", "Filtering..\n", "\tNumber of edits after filtering:\n", "\t37\n", @@ -187,8 +189,8 @@ "Making bedgraphs for ['CT'] conversions...\n", "\n", "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed...\n", - "Current memory usage 21.567791MB; Peak: 22.676446MB\n", - "Time elapsed: 3.26s\n", + "Current memory usage 21.566707MB; Peak: 22.675407MB\n", + "Time elapsed: 4.40s\n", "-------------------------------\n", "Deleting intermediate files...\n", "-------------------------------\n", @@ -237,6 +239,10 @@ "~~~~~~~~~~~~~~~~~~\n", "Identifying edits\n", "~~~~~~~~~~~~~~~~~~\n", + "i_options range(0, 2)\n", + "j_options range(0, 3)\n", + "j_options range(3, 6)\n", + "broken_up_contigs [['chr17']]\n", "Each contig is being split into 16 subsets...\n", "contig_lengths_dict:{'chr1': 248956422, 'chr2': 242193529, 'chr3': 198295559, 'chr4': 190214555, 'chr5': 181538259, 'chr6': 170805979, 'chr7': 159345973, 'chr8': 145138636, 'chr9': 138394717, 'chr10': 133797422, 'chr11': 135086622, 'chr12': 133275309, 'chr13': 114364328, 'chr14': 107043718, 'chr15': 101991189, 'chr16': 90338345, 'chr17': 83257441, 'chr18': 80373285, 'chr19': 58617616, 'chr20': 64444167, 'chr21': 46709983, 'chr22': 50818468, 'chrX': 156040895, 'chrY': 57227415, 'chrM': 16569, 'chr1_KI270706v1_random': 175055, 'chr1_KI270707v1_random': 32032, 'chr1_KI270708v1_random': 127682, 'chr1_KI270709v1_random': 66860, 'chr1_KI270710v1_random': 40176, 'chr1_KI270711v1_random': 42210, 'chr1_KI270712v1_random': 176043, 'chr1_KI270713v1_random': 40745, 'chr1_KI270714v1_random': 41717, 'chr2_KI270715v1_random': 161471, 'chr2_KI270716v1_random': 153799, 'chr3_GL000221v1_random': 155397, 'chr4_GL000008v2_random': 209709, 'chr5_GL000208v1_random': 92689, 'chr9_KI270717v1_random': 40062, 'chr9_KI270718v1_random': 38054, 'chr9_KI270719v1_random': 176845, 'chr9_KI270720v1_random': 39050, 'chr11_KI270721v1_random': 100316, 'chr14_GL000009v2_random': 201709, 'chr14_GL000225v1_random': 211173, 'chr14_KI270722v1_random': 194050, 'chr14_GL000194v1_random': 191469, 'chr14_KI270723v1_random': 38115, 'chr14_KI270724v1_random': 39555, 'chr14_KI270725v1_random': 172810, 'chr14_KI270726v1_random': 43739, 'chr15_KI270727v1_random': 448248, 'chr16_KI270728v1_random': 1872759, 'chr17_GL000205v2_random': 185591, 'chr17_KI270729v1_random': 280839, 'chr17_KI270730v1_random': 112551, 'chr22_KI270731v1_random': 150754, 'chr22_KI270732v1_random': 41543, 'chr22_KI270733v1_random': 179772, 'chr22_KI270734v1_random': 165050, 'chr22_KI270735v1_random': 42811, 'chr22_KI270736v1_random': 181920, 'chr22_KI270737v1_random': 103838, 'chr22_KI270738v1_random': 99375, 'chr22_KI270739v1_random': 73985, 'chrY_KI270740v1_random': 37240, 'chrUn_KI270302v1': 2274, 'chrUn_KI270304v1': 2165, 'chrUn_KI270303v1': 1942, 'chrUn_KI270305v1': 1472, 'chrUn_KI270322v1': 21476, 'chrUn_KI270320v1': 4416, 'chrUn_KI270310v1': 1201, 'chrUn_KI270316v1': 1444, 'chrUn_KI270315v1': 2276, 'chrUn_KI270312v1': 998, 'chrUn_KI270311v1': 12399, 'chrUn_KI270317v1': 37690, 'chrUn_KI270412v1': 1179, 'chrUn_KI270411v1': 2646, 'chrUn_KI270414v1': 2489, 'chrUn_KI270419v1': 1029, 'chrUn_KI270418v1': 2145, 'chrUn_KI270420v1': 2321, 'chrUn_KI270424v1': 2140, 'chrUn_KI270417v1': 2043, 'chrUn_KI270422v1': 1445, 'chrUn_KI270423v1': 981, 'chrUn_KI270425v1': 1884, 'chrUn_KI270429v1': 1361, 'chrUn_KI270442v1': 392061, 'chrUn_KI270466v1': 1233, 'chrUn_KI270465v1': 1774, 'chrUn_KI270467v1': 3920, 'chrUn_KI270435v1': 92983, 'chrUn_KI270438v1': 112505, 'chrUn_KI270468v1': 4055, 'chrUn_KI270510v1': 2415, 'chrUn_KI270509v1': 2318, 'chrUn_KI270518v1': 2186, 'chrUn_KI270508v1': 1951, 'chrUn_KI270516v1': 1300, 'chrUn_KI270512v1': 22689, 'chrUn_KI270519v1': 138126, 'chrUn_KI270522v1': 5674, 'chrUn_KI270511v1': 8127, 'chrUn_KI270515v1': 6361, 'chrUn_KI270507v1': 5353, 'chrUn_KI270517v1': 3253, 'chrUn_KI270529v1': 1899, 'chrUn_KI270528v1': 2983, 'chrUn_KI270530v1': 2168, 'chrUn_KI270539v1': 993, 'chrUn_KI270538v1': 91309, 'chrUn_KI270544v1': 1202, 'chrUn_KI270548v1': 1599, 'chrUn_KI270583v1': 1400, 'chrUn_KI270587v1': 2969, 'chrUn_KI270580v1': 1553, 'chrUn_KI270581v1': 7046, 'chrUn_KI270579v1': 31033, 'chrUn_KI270589v1': 44474, 'chrUn_KI270590v1': 4685, 'chrUn_KI270584v1': 4513, 'chrUn_KI270582v1': 6504, 'chrUn_KI270588v1': 6158, 'chrUn_KI270593v1': 3041, 'chrUn_KI270591v1': 5796, 'chrUn_KI270330v1': 1652, 'chrUn_KI270329v1': 1040, 'chrUn_KI270334v1': 1368, 'chrUn_KI270333v1': 2699, 'chrUn_KI270335v1': 1048, 'chrUn_KI270338v1': 1428, 'chrUn_KI270340v1': 1428, 'chrUn_KI270336v1': 1026, 'chrUn_KI270337v1': 1121, 'chrUn_KI270363v1': 1803, 'chrUn_KI270364v1': 2855, 'chrUn_KI270362v1': 3530, 'chrUn_KI270366v1': 8320, 'chrUn_KI270378v1': 1048, 'chrUn_KI270379v1': 1045, 'chrUn_KI270389v1': 1298, 'chrUn_KI270390v1': 2387, 'chrUn_KI270387v1': 1537, 'chrUn_KI270395v1': 1143, 'chrUn_KI270396v1': 1880, 'chrUn_KI270388v1': 1216, 'chrUn_KI270394v1': 970, 'chrUn_KI270386v1': 1788, 'chrUn_KI270391v1': 1484, 'chrUn_KI270383v1': 1750, 'chrUn_KI270393v1': 1308, 'chrUn_KI270384v1': 1658, 'chrUn_KI270392v1': 971, 'chrUn_KI270381v1': 1930, 'chrUn_KI270385v1': 990, 'chrUn_KI270382v1': 4215, 'chrUn_KI270376v1': 1136, 'chrUn_KI270374v1': 2656, 'chrUn_KI270372v1': 1650, 'chrUn_KI270373v1': 1451, 'chrUn_KI270375v1': 2378, 'chrUn_KI270371v1': 2805, 'chrUn_KI270448v1': 7992, 'chrUn_KI270521v1': 7642, 'chrUn_GL000195v1': 182896, 'chrUn_GL000219v1': 179198, 'chrUn_GL000220v1': 161802, 'chrUn_GL000224v1': 179693, 'chrUn_KI270741v1': 157432, 'chrUn_GL000226v1': 15008, 'chrUn_GL000213v1': 164239, 'chrUn_KI270743v1': 210658, 'chrUn_KI270744v1': 168472, 'chrUn_KI270745v1': 41891, 'chrUn_KI270746v1': 66486, 'chrUn_KI270747v1': 198735, 'chrUn_KI270748v1': 93321, 'chrUn_KI270749v1': 158759, 'chrUn_KI270750v1': 148850, 'chrUn_KI270751v1': 150742, 'chrUn_KI270752v1': 27745, 'chrUn_KI270753v1': 62944, 'chrUn_KI270754v1': 40191, 'chrUn_KI270755v1': 36723, 'chrUn_KI270756v1': 79590, 'chrUn_KI270757v1': 71251, 'chrUn_GL000214v1': 137718, 'chrUn_KI270742v1': 186739, 'chrUn_GL000216v2': 176608, 'chrUn_GL000218v1': 161147, 'chrEBV': 171823}\n", "\tContig chr17\n", @@ -244,22 +250,25 @@ "chr17:000, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:001, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:002, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:002, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:003, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:001, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:003, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", "chr17:005, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:007, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -366,39 +375,40 @@ "ref bases ['G', 'T']\n", "Successfully ran get_edit_information_wrapper\n", "alt bases: ['A', 'G'], ref bases: ['G', 'T']\n", - "Getting info: A G 34 41\n", - "Getting info: G T 12 45\n", - "chr17:008, total reads: 2, counts_df: chr17\n", - "edited 2\n", - "total_edits 4\n", - "chr17:007, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:012, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:013, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:014, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:015, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:012, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:013, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:015, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", + "Getting info: A G 34 41\n", + "Getting info: G T 12 45\n", + "chr17:008, total reads: 2, counts_df: chr17\n", + "edited 2\n", + "total_edits 4\n", "Reads processed:\t2\n", - "Time to process reads in min:\t0.15093\n", + "Time to process reads in min:\t0.03892\n", "Read Summary:\n", "edited 2\n", "total_edits 4\n", "dtype: int64\n", "\n", + "Deleting overall_label_to_list_of_contents...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -413,8 +423,29 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 16/16 [00:08<00:00, 1.83it/s]\n", - "100%|██████████| 16/16 [00:08<00:00, 1.89it/s]\n" + "100%|██████████| 16/16 [00:02<00:00, 7.17it/s]\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "~~~~~~\n", + "!!!!SINGLE END!!!!!\n", + "~~~~~~~`\n", + "~~~~~~\n", + "!!!!SINGLE END!!!!!\n", + "~~~~~~~`\n", + "~~~~~~\n", + "!!!!SINGLE END!!!!!\n", + "~~~~~~~`\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|██████████| 16/16 [00:02<00:00, 7.04it/s]\n" ] }, { @@ -426,7 +457,7 @@ "original 4\n", "filtered 3\n", "dtype: int64\n", - "Total time to calculate coverage: 0.145 minutes\n", + "Total time to calculate coverage: 0.039 minutes\n", "Filtering..\n", "\tNumber of edits after filtering:\n", "\t3\n", @@ -440,8 +471,8 @@ "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", "1 final deduplicated SAILOR-formatted sites\n", "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed...\n", - "Current memory usage 21.288258MB; Peak: 22.400914MB\n", - "Time elapsed: 18.62s\n", + "Current memory usage 21.284636MB; Peak: 22.397353MB\n", + "Time elapsed: 5.56s\n", "-------------------------------\n", "Deleting intermediate files...\n", "-------------------------------\n", @@ -492,34 +523,17 @@ "~~~~~~~~~~~~~~~~~~\n", "Identifying edits\n", "~~~~~~~~~~~~~~~~~~\n", + "i_options range(0, 2)\n", + "j_options range(0, 3)\n", + "j_options range(3, 6)\n", + "broken_up_contigs [['chr17']]\n", "Each contig is being split into 16 subsets...\n", "contig_lengths_dict:{'chr1': 248956422, 'chr2': 242193529, 'chr3': 198295559, 'chr4': 190214555, 'chr5': 181538259, 'chr6': 170805979, 'chr7': 159345973, 'chr8': 145138636, 'chr9': 138394717, 'chr10': 133797422, 'chr11': 135086622, 'chr12': 133275309, 'chr13': 114364328, 'chr14': 107043718, 'chr15': 101991189, 'chr16': 90338345, 'chr17': 83257441, 'chr18': 80373285, 'chr19': 58617616, 'chr20': 64444167, 'chr21': 46709983, 'chr22': 50818468, 'chrX': 156040895, 'chrY': 57227415, 'chrM': 16569, 'chr1_KI270706v1_random': 175055, 'chr1_KI270707v1_random': 32032, 'chr1_KI270708v1_random': 127682, 'chr1_KI270709v1_random': 66860, 'chr1_KI270710v1_random': 40176, 'chr1_KI270711v1_random': 42210, 'chr1_KI270712v1_random': 176043, 'chr1_KI270713v1_random': 40745, 'chr1_KI270714v1_random': 41717, 'chr2_KI270715v1_random': 161471, 'chr2_KI270716v1_random': 153799, 'chr3_GL000221v1_random': 155397, 'chr4_GL000008v2_random': 209709, 'chr5_GL000208v1_random': 92689, 'chr9_KI270717v1_random': 40062, 'chr9_KI270718v1_random': 38054, 'chr9_KI270719v1_random': 176845, 'chr9_KI270720v1_random': 39050, 'chr11_KI270721v1_random': 100316, 'chr14_GL000009v2_random': 201709, 'chr14_GL000225v1_random': 211173, 'chr14_KI270722v1_random': 194050, 'chr14_GL000194v1_random': 191469, 'chr14_KI270723v1_random': 38115, 'chr14_KI270724v1_random': 39555, 'chr14_KI270725v1_random': 172810, 'chr14_KI270726v1_random': 43739, 'chr15_KI270727v1_random': 448248, 'chr16_KI270728v1_random': 1872759, 'chr17_GL000205v2_random': 185591, 'chr17_KI270729v1_random': 280839, 'chr17_KI270730v1_random': 112551, 'chr22_KI270731v1_random': 150754, 'chr22_KI270732v1_random': 41543, 'chr22_KI270733v1_random': 179772, 'chr22_KI270734v1_random': 165050, 'chr22_KI270735v1_random': 42811, 'chr22_KI270736v1_random': 181920, 'chr22_KI270737v1_random': 103838, 'chr22_KI270738v1_random': 99375, 'chr22_KI270739v1_random': 73985, 'chrY_KI270740v1_random': 37240, 'chrUn_KI270302v1': 2274, 'chrUn_KI270304v1': 2165, 'chrUn_KI270303v1': 1942, 'chrUn_KI270305v1': 1472, 'chrUn_KI270322v1': 21476, 'chrUn_KI270320v1': 4416, 'chrUn_KI270310v1': 1201, 'chrUn_KI270316v1': 1444, 'chrUn_KI270315v1': 2276, 'chrUn_KI270312v1': 998, 'chrUn_KI270311v1': 12399, 'chrUn_KI270317v1': 37690, 'chrUn_KI270412v1': 1179, 'chrUn_KI270411v1': 2646, 'chrUn_KI270414v1': 2489, 'chrUn_KI270419v1': 1029, 'chrUn_KI270418v1': 2145, 'chrUn_KI270420v1': 2321, 'chrUn_KI270424v1': 2140, 'chrUn_KI270417v1': 2043, 'chrUn_KI270422v1': 1445, 'chrUn_KI270423v1': 981, 'chrUn_KI270425v1': 1884, 'chrUn_KI270429v1': 1361, 'chrUn_KI270442v1': 392061, 'chrUn_KI270466v1': 1233, 'chrUn_KI270465v1': 1774, 'chrUn_KI270467v1': 3920, 'chrUn_KI270435v1': 92983, 'chrUn_KI270438v1': 112505, 'chrUn_KI270468v1': 4055, 'chrUn_KI270510v1': 2415, 'chrUn_KI270509v1': 2318, 'chrUn_KI270518v1': 2186, 'chrUn_KI270508v1': 1951, 'chrUn_KI270516v1': 1300, 'chrUn_KI270512v1': 22689, 'chrUn_KI270519v1': 138126, 'chrUn_KI270522v1': 5674, 'chrUn_KI270511v1': 8127, 'chrUn_KI270515v1': 6361, 'chrUn_KI270507v1': 5353, 'chrUn_KI270517v1': 3253, 'chrUn_KI270529v1': 1899, 'chrUn_KI270528v1': 2983, 'chrUn_KI270530v1': 2168, 'chrUn_KI270539v1': 993, 'chrUn_KI270538v1': 91309, 'chrUn_KI270544v1': 1202, 'chrUn_KI270548v1': 1599, 'chrUn_KI270583v1': 1400, 'chrUn_KI270587v1': 2969, 'chrUn_KI270580v1': 1553, 'chrUn_KI270581v1': 7046, 'chrUn_KI270579v1': 31033, 'chrUn_KI270589v1': 44474, 'chrUn_KI270590v1': 4685, 'chrUn_KI270584v1': 4513, 'chrUn_KI270582v1': 6504, 'chrUn_KI270588v1': 6158, 'chrUn_KI270593v1': 3041, 'chrUn_KI270591v1': 5796, 'chrUn_KI270330v1': 1652, 'chrUn_KI270329v1': 1040, 'chrUn_KI270334v1': 1368, 'chrUn_KI270333v1': 2699, 'chrUn_KI270335v1': 1048, 'chrUn_KI270338v1': 1428, 'chrUn_KI270340v1': 1428, 'chrUn_KI270336v1': 1026, 'chrUn_KI270337v1': 1121, 'chrUn_KI270363v1': 1803, 'chrUn_KI270364v1': 2855, 'chrUn_KI270362v1': 3530, 'chrUn_KI270366v1': 8320, 'chrUn_KI270378v1': 1048, 'chrUn_KI270379v1': 1045, 'chrUn_KI270389v1': 1298, 'chrUn_KI270390v1': 2387, 'chrUn_KI270387v1': 1537, 'chrUn_KI270395v1': 1143, 'chrUn_KI270396v1': 1880, 'chrUn_KI270388v1': 1216, 'chrUn_KI270394v1': 970, 'chrUn_KI270386v1': 1788, 'chrUn_KI270391v1': 1484, 'chrUn_KI270383v1': 1750, 'chrUn_KI270393v1': 1308, 'chrUn_KI270384v1': 1658, 'chrUn_KI270392v1': 971, 'chrUn_KI270381v1': 1930, 'chrUn_KI270385v1': 990, 'chrUn_KI270382v1': 4215, 'chrUn_KI270376v1': 1136, 'chrUn_KI270374v1': 2656, 'chrUn_KI270372v1': 1650, 'chrUn_KI270373v1': 1451, 'chrUn_KI270375v1': 2378, 'chrUn_KI270371v1': 2805, 'chrUn_KI270448v1': 7992, 'chrUn_KI270521v1': 7642, 'chrUn_GL000195v1': 182896, 'chrUn_GL000219v1': 179198, 'chrUn_GL000220v1': 161802, 'chrUn_GL000224v1': 179693, 'chrUn_KI270741v1': 157432, 'chrUn_GL000226v1': 15008, 'chrUn_GL000213v1': 164239, 'chrUn_KI270743v1': 210658, 'chrUn_KI270744v1': 168472, 'chrUn_KI270745v1': 41891, 'chrUn_KI270746v1': 66486, 'chrUn_KI270747v1': 198735, 'chrUn_KI270748v1': 93321, 'chrUn_KI270749v1': 158759, 'chrUn_KI270750v1': 148850, 'chrUn_KI270751v1': 150742, 'chrUn_KI270752v1': 27745, 'chrUn_KI270753v1': 62944, 'chrUn_KI270754v1': 40191, 'chrUn_KI270755v1': 36723, 'chrUn_KI270756v1': 79590, 'chrUn_KI270757v1': 71251, 'chrUn_GL000214v1': 137718, 'chrUn_KI270742v1': 186739, 'chrUn_GL000216v2': 176608, 'chrUn_GL000218v1': 161147, 'chrEBV': 171823}\n", "\tContig chr17\n", "16 total jobs\n", - "chr17:000, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", "chr17:001, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:002, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "chr17:003, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "chr17:005, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "chr17:007, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "MD tag 26A20G52\n", "CIGAR tag 1S100M\n", @@ -622,41 +636,56 @@ "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "alt bases ['A', 'G']\n", "ref bases ['G', 'T']\n", - "Successfully ran get_edit_information_wrapper\n", - "alt bases: ['A', 'G'], ref bases: ['G', 'T']\n", - "Getting info: A G 34 41\n", - "Getting info: G T 12 45\n", - "chr17:008, total reads: 2, counts_df: chr17\n", - "edited 2\n", - "total_edits 4\n", - "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:003, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:005, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", "chr17:013, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", + "chr17:000, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", "chr17:012, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:015, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:002, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:007, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", "chr17:014, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", + "chr17:015, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", "Reads processed:\t2\n", - "Time to process reads in min:\t0.15098\n", + "Time to process reads in min:\t0.04157\n", "Read Summary:\n", "edited 2\n", "total_edits 4\n", "dtype: int64\n", "\n", + "Deleting overall_label_to_list_of_contents...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -671,7 +700,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 16/16 [00:08<00:00, 1.83it/s]\n" + "100%|██████████| 16/16 [00:02<00:00, 6.72it/s]\n" ] }, { @@ -699,7 +728,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 16/16 [00:06<00:00, 2.39it/s]\n" + "100%|██████████| 16/16 [00:02<00:00, 6.73it/s]\n" ] }, { @@ -711,7 +740,7 @@ "original 4\n", "filtered 3\n", "dtype: int64\n", - "Total time to calculate coverage: 0.116 minutes\n", + "Total time to calculate coverage: 0.042 minutes\n", "Filtering..\n", "\tNumber of edits after filtering:\n", "\t3\n", @@ -725,8 +754,8 @@ "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", "1 final deduplicated SAILOR-formatted sites\n", "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed...\n", - "Current memory usage 21.289436MB; Peak: 22.402017MB\n", - "Time elapsed: 16.87s\n", + "Current memory usage 21.285267MB; Peak: 22.397912MB\n", + "Time elapsed: 5.93s\n", "-------------------------------\n", "Deleting intermediate files...\n", "-------------------------------\n", @@ -777,6 +806,10 @@ "~~~~~~~~~~~~~~~~~~\n", "Identifying edits\n", "~~~~~~~~~~~~~~~~~~\n", + "i_options range(0, 2)\n", + "j_options range(0, 3)\n", + "j_options range(3, 6)\n", + "broken_up_contigs [['chr17']]\n", "Each contig is being split into 16 subsets...\n", "contig_lengths_dict:{'chr1': 248956422, 'chr2': 242193529, 'chr3': 198295559, 'chr4': 190214555, 'chr5': 181538259, 'chr6': 170805979, 'chr7': 159345973, 'chr8': 145138636, 'chr9': 138394717, 'chr10': 133797422, 'chr11': 135086622, 'chr12': 133275309, 'chr13': 114364328, 'chr14': 107043718, 'chr15': 101991189, 'chr16': 90338345, 'chr17': 83257441, 'chr18': 80373285, 'chr19': 58617616, 'chr20': 64444167, 'chr21': 46709983, 'chr22': 50818468, 'chrX': 156040895, 'chrY': 57227415, 'chrM': 16569, 'chr1_KI270706v1_random': 175055, 'chr1_KI270707v1_random': 32032, 'chr1_KI270708v1_random': 127682, 'chr1_KI270709v1_random': 66860, 'chr1_KI270710v1_random': 40176, 'chr1_KI270711v1_random': 42210, 'chr1_KI270712v1_random': 176043, 'chr1_KI270713v1_random': 40745, 'chr1_KI270714v1_random': 41717, 'chr2_KI270715v1_random': 161471, 'chr2_KI270716v1_random': 153799, 'chr3_GL000221v1_random': 155397, 'chr4_GL000008v2_random': 209709, 'chr5_GL000208v1_random': 92689, 'chr9_KI270717v1_random': 40062, 'chr9_KI270718v1_random': 38054, 'chr9_KI270719v1_random': 176845, 'chr9_KI270720v1_random': 39050, 'chr11_KI270721v1_random': 100316, 'chr14_GL000009v2_random': 201709, 'chr14_GL000225v1_random': 211173, 'chr14_KI270722v1_random': 194050, 'chr14_GL000194v1_random': 191469, 'chr14_KI270723v1_random': 38115, 'chr14_KI270724v1_random': 39555, 'chr14_KI270725v1_random': 172810, 'chr14_KI270726v1_random': 43739, 'chr15_KI270727v1_random': 448248, 'chr16_KI270728v1_random': 1872759, 'chr17_GL000205v2_random': 185591, 'chr17_KI270729v1_random': 280839, 'chr17_KI270730v1_random': 112551, 'chr22_KI270731v1_random': 150754, 'chr22_KI270732v1_random': 41543, 'chr22_KI270733v1_random': 179772, 'chr22_KI270734v1_random': 165050, 'chr22_KI270735v1_random': 42811, 'chr22_KI270736v1_random': 181920, 'chr22_KI270737v1_random': 103838, 'chr22_KI270738v1_random': 99375, 'chr22_KI270739v1_random': 73985, 'chrY_KI270740v1_random': 37240, 'chrUn_KI270302v1': 2274, 'chrUn_KI270304v1': 2165, 'chrUn_KI270303v1': 1942, 'chrUn_KI270305v1': 1472, 'chrUn_KI270322v1': 21476, 'chrUn_KI270320v1': 4416, 'chrUn_KI270310v1': 1201, 'chrUn_KI270316v1': 1444, 'chrUn_KI270315v1': 2276, 'chrUn_KI270312v1': 998, 'chrUn_KI270311v1': 12399, 'chrUn_KI270317v1': 37690, 'chrUn_KI270412v1': 1179, 'chrUn_KI270411v1': 2646, 'chrUn_KI270414v1': 2489, 'chrUn_KI270419v1': 1029, 'chrUn_KI270418v1': 2145, 'chrUn_KI270420v1': 2321, 'chrUn_KI270424v1': 2140, 'chrUn_KI270417v1': 2043, 'chrUn_KI270422v1': 1445, 'chrUn_KI270423v1': 981, 'chrUn_KI270425v1': 1884, 'chrUn_KI270429v1': 1361, 'chrUn_KI270442v1': 392061, 'chrUn_KI270466v1': 1233, 'chrUn_KI270465v1': 1774, 'chrUn_KI270467v1': 3920, 'chrUn_KI270435v1': 92983, 'chrUn_KI270438v1': 112505, 'chrUn_KI270468v1': 4055, 'chrUn_KI270510v1': 2415, 'chrUn_KI270509v1': 2318, 'chrUn_KI270518v1': 2186, 'chrUn_KI270508v1': 1951, 'chrUn_KI270516v1': 1300, 'chrUn_KI270512v1': 22689, 'chrUn_KI270519v1': 138126, 'chrUn_KI270522v1': 5674, 'chrUn_KI270511v1': 8127, 'chrUn_KI270515v1': 6361, 'chrUn_KI270507v1': 5353, 'chrUn_KI270517v1': 3253, 'chrUn_KI270529v1': 1899, 'chrUn_KI270528v1': 2983, 'chrUn_KI270530v1': 2168, 'chrUn_KI270539v1': 993, 'chrUn_KI270538v1': 91309, 'chrUn_KI270544v1': 1202, 'chrUn_KI270548v1': 1599, 'chrUn_KI270583v1': 1400, 'chrUn_KI270587v1': 2969, 'chrUn_KI270580v1': 1553, 'chrUn_KI270581v1': 7046, 'chrUn_KI270579v1': 31033, 'chrUn_KI270589v1': 44474, 'chrUn_KI270590v1': 4685, 'chrUn_KI270584v1': 4513, 'chrUn_KI270582v1': 6504, 'chrUn_KI270588v1': 6158, 'chrUn_KI270593v1': 3041, 'chrUn_KI270591v1': 5796, 'chrUn_KI270330v1': 1652, 'chrUn_KI270329v1': 1040, 'chrUn_KI270334v1': 1368, 'chrUn_KI270333v1': 2699, 'chrUn_KI270335v1': 1048, 'chrUn_KI270338v1': 1428, 'chrUn_KI270340v1': 1428, 'chrUn_KI270336v1': 1026, 'chrUn_KI270337v1': 1121, 'chrUn_KI270363v1': 1803, 'chrUn_KI270364v1': 2855, 'chrUn_KI270362v1': 3530, 'chrUn_KI270366v1': 8320, 'chrUn_KI270378v1': 1048, 'chrUn_KI270379v1': 1045, 'chrUn_KI270389v1': 1298, 'chrUn_KI270390v1': 2387, 'chrUn_KI270387v1': 1537, 'chrUn_KI270395v1': 1143, 'chrUn_KI270396v1': 1880, 'chrUn_KI270388v1': 1216, 'chrUn_KI270394v1': 970, 'chrUn_KI270386v1': 1788, 'chrUn_KI270391v1': 1484, 'chrUn_KI270383v1': 1750, 'chrUn_KI270393v1': 1308, 'chrUn_KI270384v1': 1658, 'chrUn_KI270392v1': 971, 'chrUn_KI270381v1': 1930, 'chrUn_KI270385v1': 990, 'chrUn_KI270382v1': 4215, 'chrUn_KI270376v1': 1136, 'chrUn_KI270374v1': 2656, 'chrUn_KI270372v1': 1650, 'chrUn_KI270373v1': 1451, 'chrUn_KI270375v1': 2378, 'chrUn_KI270371v1': 2805, 'chrUn_KI270448v1': 7992, 'chrUn_KI270521v1': 7642, 'chrUn_GL000195v1': 182896, 'chrUn_GL000219v1': 179198, 'chrUn_GL000220v1': 161802, 'chrUn_GL000224v1': 179693, 'chrUn_KI270741v1': 157432, 'chrUn_GL000226v1': 15008, 'chrUn_GL000213v1': 164239, 'chrUn_KI270743v1': 210658, 'chrUn_KI270744v1': 168472, 'chrUn_KI270745v1': 41891, 'chrUn_KI270746v1': 66486, 'chrUn_KI270747v1': 198735, 'chrUn_KI270748v1': 93321, 'chrUn_KI270749v1': 158759, 'chrUn_KI270750v1': 148850, 'chrUn_KI270751v1': 150742, 'chrUn_KI270752v1': 27745, 'chrUn_KI270753v1': 62944, 'chrUn_KI270754v1': 40191, 'chrUn_KI270755v1': 36723, 'chrUn_KI270756v1': 79590, 'chrUn_KI270757v1': 71251, 'chrUn_GL000214v1': 137718, 'chrUn_KI270742v1': 186739, 'chrUn_GL000216v2': 176608, 'chrUn_GL000218v1': 161147, 'chrEBV': 171823}\n", "\tContig chr17\n", @@ -793,46 +826,104 @@ "chr17:003, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:007, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:005, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:007, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:012, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:013, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:013, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:014, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:015, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:015, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:012, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:014, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:005, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "MD tag 10A0G0A84\n", + "CIGAR tag 13M198556N84M1S\n", + "is_reverse False\n", + "is_read1 False\n", + "is_read2 True\n", + "is_paired True\n", + "is_proper_pair True\n", + "mate_is_reverse True\n", + "read id VH01429:22:AACFJ5NHV:1:1112:41030:25422\n", + "VH01429:22:AACFJ5NHV:1:1112:41030:25422\t163\t#16\t43001705\t255\t13M198556N84M1S\t#16\t43200271\t198653\tGGCTGTCATGGAGGAGGAGGAGGATGAGCTCAAAGATGAAGTTCAAAGTCAGTCCTCTGCTTCCTCAGAGGATTACATCATCATCCTGCCTGAGTGCA\tarray('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\t[('MD', '10A0G0A84'), ('PG', 'MarkDuplicates'), ('RG', 'ET_STAMPExpt_1-CTRL_S2'), ('NH', 1), ('HI', 1), ('NM', 3), ('AS', 172), ('XS', '+')]\n", + "reverse_or_forward: +\n", + "----------------------------\n", + "MD tag: 10A0G0A84\n", + "CIGAR string 13M198556N84M1S\n", + "Reference seq: GGCTGTCATGAGAGAGGAGGAGGATGAGCTCAAAGATGAAGTTCAAAGTCAGTCCTCTGCTTCCTCAGAGGATTACATCATCATCCTGCCTGAGTGC\n", + "Aligned seq: GGCTGTCATGGAGGAGGAGGAGGATGAGCTCAAAGATGAAGTTCAAAGTCAGTCCTCTGCTTCCTCAGAGGATTACATCATCATCCTGCCTGAGTGCA\n", + "Qualities: array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "CIGAR tuples before clipping (if needed):\n", + " [(0, 13), (3, 198556), (0, 84), (4, 1)]\n", + "Aligned sequence before clipping (if needed):\n", + " GGCTGTCATGGAGGAGGAGGAGGATGAGCTCAAAGATGAAGTTCAAAGTCAGTCCTCTGCTTCCTCAGAGGATTACATCATCATCCTGCCTGAGTGCA\n", + "Qualities before clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "Soft clipping quality scores ...\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "CIGAR tuples after clipping (if needed):\n", + " [(0, 13), (3, 198556), (0, 84)]\n", + "Aligned sequence after clipping (if needed):\n", + " GGCTGTCATGGAGGAGGAGGAGGATGAGCTCAAAGATGAAGTTCAAAGTCAGTCCTCTGCTTCCTCAGAGGATTACATCATCATCCTGCCTGAGTGC\n", + "Qualities after clipping:\n", + " array('B', [34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 34, 26, 34, 34, 34, 34, 12, 34, 34, 12, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34, 34])\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "['10', '0', '0', '84']\n", + "[10, 11, 12, 97]\n", + "Indicated reference seq:\n", + " ggctgtcatgAGAgaggaggaggatgagctcaaagatgaagttcaaagtcagtcctctgcttcctcagaggattacatcatcatcctgcctgagtgc\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "Fixed reference seq:\n", + " ggctgtcatgAGA198556*ngaggaggaggatgagctcaaagatgaagttcaaagtcagtcctctgcttcctcagaggattacatcatcatcctgcctgagtgc\n", + "Fixed aligned seq:\n", + " GGCTGTCATGGAG198556*nGAGGAGGAGGATGAGCTCAAAGATGAAGTTCAAAGTCAGTCCTCTGCTTCCTCAGAGGATTACATCATCATCCTGCCTGAGTGC\n", + "Finalized fixed aligned seq:\n", + " ggctgtcatgGAG198556*ngaggaggaggatgagctcaaagatgaagttcaaagtcagtcctctgcttcctcagaggattacatcatcatcctgcctgagtgc\n", + "Indicated qualities:\n", + " 34343434343434343434263434343434343434342634342634343434343434343434343434343434343434343434123434343434343426343434342634343434343434342634343434342634343434123434123434343434343434343434343434\n", + "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", + "alt bases ['G', 'A', 'G']\n", + "ref bases ['A', 'G', 'A']\n", + "Successfully ran get_edit_information_wrapper\n", + "alt bases: ['G', 'A', 'G'], ref bases: ['A', 'G', 'A']\n", + "Getting info: G A 26 11\n", + "Getting info: A G 34 12\n", + "Getting info: G A 34 13\n", + "chr17:008, total reads: 1, counts_df: chr17\n", + "edited 1\n", + "total_edits 3\n", "Reads processed:\t1\n", - "Time to process reads in min:\t0.15103\n", + "Time to process reads in min:\t0.04317\n", "Read Summary:\n", "edited 1\n", "total_edits 3\n", "dtype: int64\n", "\n", + "Deleting overall_label_to_list_of_contents...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -847,7 +938,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 16/16 [00:08<00:00, 1.82it/s]\n" + "100%|██████████| 16/16 [00:02<00:00, 6.50it/s]\n" ] }, { @@ -875,7 +966,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 16/16 [00:08<00:00, 1.90it/s]\n" + "100%|██████████| 16/16 [00:02<00:00, 6.11it/s]\n" ] }, { @@ -887,7 +978,7 @@ "original 3\n", "filtered 3\n", "dtype: int64\n", - "Total time to calculate coverage: 0.146 minutes\n", + "Total time to calculate coverage: 0.046 minutes\n", "Filtering..\n", "\tNumber of edits after filtering:\n", "\t3\n", @@ -901,8 +992,8 @@ "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", "0 final deduplicated SAILOR-formatted sites\n", "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed...\n", - "Current memory usage 21.436974MB; Peak: 22.547439MB\n", - "Time elapsed: 18.59s\n", + "Current memory usage 21.433455MB; Peak: 22.543922MB\n", + "Time elapsed: 6.32s\n", "-------------------------------\n", "Deleting intermediate files...\n", "-------------------------------\n", @@ -953,6 +1044,10 @@ "~~~~~~~~~~~~~~~~~~\n", "Identifying edits\n", "~~~~~~~~~~~~~~~~~~\n", + "i_options range(0, 2)\n", + "j_options range(0, 3)\n", + "j_options range(3, 6)\n", + "broken_up_contigs [['chr17']]\n", "Each contig is being split into 16 subsets...\n", "contig_lengths_dict:{'chr1': 248956422, 'chr2': 242193529, 'chr3': 198295559, 'chr4': 190214555, 'chr5': 181538259, 'chr6': 170805979, 'chr7': 159345973, 'chr8': 145138636, 'chr9': 138394717, 'chr10': 133797422, 'chr11': 135086622, 'chr12': 133275309, 'chr13': 114364328, 'chr14': 107043718, 'chr15': 101991189, 'chr16': 90338345, 'chr17': 83257441, 'chr18': 80373285, 'chr19': 58617616, 'chr20': 64444167, 'chr21': 46709983, 'chr22': 50818468, 'chrX': 156040895, 'chrY': 57227415, 'chrM': 16569, 'chr1_KI270706v1_random': 175055, 'chr1_KI270707v1_random': 32032, 'chr1_KI270708v1_random': 127682, 'chr1_KI270709v1_random': 66860, 'chr1_KI270710v1_random': 40176, 'chr1_KI270711v1_random': 42210, 'chr1_KI270712v1_random': 176043, 'chr1_KI270713v1_random': 40745, 'chr1_KI270714v1_random': 41717, 'chr2_KI270715v1_random': 161471, 'chr2_KI270716v1_random': 153799, 'chr3_GL000221v1_random': 155397, 'chr4_GL000008v2_random': 209709, 'chr5_GL000208v1_random': 92689, 'chr9_KI270717v1_random': 40062, 'chr9_KI270718v1_random': 38054, 'chr9_KI270719v1_random': 176845, 'chr9_KI270720v1_random': 39050, 'chr11_KI270721v1_random': 100316, 'chr14_GL000009v2_random': 201709, 'chr14_GL000225v1_random': 211173, 'chr14_KI270722v1_random': 194050, 'chr14_GL000194v1_random': 191469, 'chr14_KI270723v1_random': 38115, 'chr14_KI270724v1_random': 39555, 'chr14_KI270725v1_random': 172810, 'chr14_KI270726v1_random': 43739, 'chr15_KI270727v1_random': 448248, 'chr16_KI270728v1_random': 1872759, 'chr17_GL000205v2_random': 185591, 'chr17_KI270729v1_random': 280839, 'chr17_KI270730v1_random': 112551, 'chr22_KI270731v1_random': 150754, 'chr22_KI270732v1_random': 41543, 'chr22_KI270733v1_random': 179772, 'chr22_KI270734v1_random': 165050, 'chr22_KI270735v1_random': 42811, 'chr22_KI270736v1_random': 181920, 'chr22_KI270737v1_random': 103838, 'chr22_KI270738v1_random': 99375, 'chr22_KI270739v1_random': 73985, 'chrY_KI270740v1_random': 37240, 'chrUn_KI270302v1': 2274, 'chrUn_KI270304v1': 2165, 'chrUn_KI270303v1': 1942, 'chrUn_KI270305v1': 1472, 'chrUn_KI270322v1': 21476, 'chrUn_KI270320v1': 4416, 'chrUn_KI270310v1': 1201, 'chrUn_KI270316v1': 1444, 'chrUn_KI270315v1': 2276, 'chrUn_KI270312v1': 998, 'chrUn_KI270311v1': 12399, 'chrUn_KI270317v1': 37690, 'chrUn_KI270412v1': 1179, 'chrUn_KI270411v1': 2646, 'chrUn_KI270414v1': 2489, 'chrUn_KI270419v1': 1029, 'chrUn_KI270418v1': 2145, 'chrUn_KI270420v1': 2321, 'chrUn_KI270424v1': 2140, 'chrUn_KI270417v1': 2043, 'chrUn_KI270422v1': 1445, 'chrUn_KI270423v1': 981, 'chrUn_KI270425v1': 1884, 'chrUn_KI270429v1': 1361, 'chrUn_KI270442v1': 392061, 'chrUn_KI270466v1': 1233, 'chrUn_KI270465v1': 1774, 'chrUn_KI270467v1': 3920, 'chrUn_KI270435v1': 92983, 'chrUn_KI270438v1': 112505, 'chrUn_KI270468v1': 4055, 'chrUn_KI270510v1': 2415, 'chrUn_KI270509v1': 2318, 'chrUn_KI270518v1': 2186, 'chrUn_KI270508v1': 1951, 'chrUn_KI270516v1': 1300, 'chrUn_KI270512v1': 22689, 'chrUn_KI270519v1': 138126, 'chrUn_KI270522v1': 5674, 'chrUn_KI270511v1': 8127, 'chrUn_KI270515v1': 6361, 'chrUn_KI270507v1': 5353, 'chrUn_KI270517v1': 3253, 'chrUn_KI270529v1': 1899, 'chrUn_KI270528v1': 2983, 'chrUn_KI270530v1': 2168, 'chrUn_KI270539v1': 993, 'chrUn_KI270538v1': 91309, 'chrUn_KI270544v1': 1202, 'chrUn_KI270548v1': 1599, 'chrUn_KI270583v1': 1400, 'chrUn_KI270587v1': 2969, 'chrUn_KI270580v1': 1553, 'chrUn_KI270581v1': 7046, 'chrUn_KI270579v1': 31033, 'chrUn_KI270589v1': 44474, 'chrUn_KI270590v1': 4685, 'chrUn_KI270584v1': 4513, 'chrUn_KI270582v1': 6504, 'chrUn_KI270588v1': 6158, 'chrUn_KI270593v1': 3041, 'chrUn_KI270591v1': 5796, 'chrUn_KI270330v1': 1652, 'chrUn_KI270329v1': 1040, 'chrUn_KI270334v1': 1368, 'chrUn_KI270333v1': 2699, 'chrUn_KI270335v1': 1048, 'chrUn_KI270338v1': 1428, 'chrUn_KI270340v1': 1428, 'chrUn_KI270336v1': 1026, 'chrUn_KI270337v1': 1121, 'chrUn_KI270363v1': 1803, 'chrUn_KI270364v1': 2855, 'chrUn_KI270362v1': 3530, 'chrUn_KI270366v1': 8320, 'chrUn_KI270378v1': 1048, 'chrUn_KI270379v1': 1045, 'chrUn_KI270389v1': 1298, 'chrUn_KI270390v1': 2387, 'chrUn_KI270387v1': 1537, 'chrUn_KI270395v1': 1143, 'chrUn_KI270396v1': 1880, 'chrUn_KI270388v1': 1216, 'chrUn_KI270394v1': 970, 'chrUn_KI270386v1': 1788, 'chrUn_KI270391v1': 1484, 'chrUn_KI270383v1': 1750, 'chrUn_KI270393v1': 1308, 'chrUn_KI270384v1': 1658, 'chrUn_KI270392v1': 971, 'chrUn_KI270381v1': 1930, 'chrUn_KI270385v1': 990, 'chrUn_KI270382v1': 4215, 'chrUn_KI270376v1': 1136, 'chrUn_KI270374v1': 2656, 'chrUn_KI270372v1': 1650, 'chrUn_KI270373v1': 1451, 'chrUn_KI270375v1': 2378, 'chrUn_KI270371v1': 2805, 'chrUn_KI270448v1': 7992, 'chrUn_KI270521v1': 7642, 'chrUn_GL000195v1': 182896, 'chrUn_GL000219v1': 179198, 'chrUn_GL000220v1': 161802, 'chrUn_GL000224v1': 179693, 'chrUn_KI270741v1': 157432, 'chrUn_GL000226v1': 15008, 'chrUn_GL000213v1': 164239, 'chrUn_KI270743v1': 210658, 'chrUn_KI270744v1': 168472, 'chrUn_KI270745v1': 41891, 'chrUn_KI270746v1': 66486, 'chrUn_KI270747v1': 198735, 'chrUn_KI270748v1': 93321, 'chrUn_KI270749v1': 158759, 'chrUn_KI270750v1': 148850, 'chrUn_KI270751v1': 150742, 'chrUn_KI270752v1': 27745, 'chrUn_KI270753v1': 62944, 'chrUn_KI270754v1': 40191, 'chrUn_KI270755v1': 36723, 'chrUn_KI270756v1': 79590, 'chrUn_KI270757v1': 71251, 'chrUn_GL000214v1': 137718, 'chrUn_KI270742v1': 186739, 'chrUn_GL000216v2': 176608, 'chrUn_GL000218v1': 161147, 'chrEBV': 171823}\n", "\tContig chr17\n", @@ -969,37 +1064,31 @@ "chr17:003, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", "chr17:005, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", "chr17:007, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:008, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:012, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", "chr17:013, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:014, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:012, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -1731,8 +1820,27 @@ "Indicated reference seq:\n", " tttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaaactgactaaaggaga\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", - "Fixed reference seq:\n", - " tttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaaactgactaaaggaga\n", + "Fixed reference seq:\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|██████████| 16/16 [00:02<00:00, 6.78it/s]\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + " chr17:008, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:014, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "tttattaatttttgcaagacttcggagggtgctCtgtggcgattaatattgctgagctgagcacagctgcaGtactttcctgtaaaactgactaaaggaga\n", "Fixed aligned seq:\n", " TTTATTAATTTTTGCAAGACTTCGGAGGGTGCTGTGTGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACTAAAGGAGA\n", "Finalized fixed aligned seq:\n", @@ -1804,13 +1912,14 @@ "no_edits 1\n", "total_edits 32\n", "Reads processed:\t16\n", - "Time to process reads in min:\t0.15431\n", + "Time to process reads in min:\t0.04113\n", "Read Summary:\n", "edited 15\n", "no_edits 1\n", "total_edits 32\n", "dtype: int64\n", "\n", + "Deleting overall_label_to_list_of_contents...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -1818,15 +1927,64 @@ "\tsplit chr17_010_52035910_57239501, 10/16...\n", "Done grouping! Concatenating ...\n", "Done concatenating!\n", - "edit_info_grouped_per_contig_combined dict_keys(['chr17_000_0_5203591', 'chr17_001_5203591_10407182', 'chr17_002_10407182_15610773', 'chr17_003_15610773_20814364', 'chr17_004_20814364_26017955', 'chr17_005_26017955_31221546', 'chr17_006_31221546_36425137', 'chr17_007_36425137_41628728', 'chr17_008_41628728_46832319', 'chr17_009_46832319_52035910', 'chr17_010_52035910_57239501', 'chr17_011_57239501_62443092', 'chr17_012_62443092_67646683', 'chr17_013_67646683_72850274', 'chr17_014_72850274_78053865', 'chr17_015_78053865_83257456'])\n" + "edit_info_grouped_per_contig_combined dict_keys(['chr17_000_0_5203591', 'chr17_001_5203591_10407182', 'chr17_002_10407182_15610773', 'chr17_003_15610773_20814364', 'chr17_004_20814364_26017955', 'chr17_005_26017955_31221546', 'chr17_006_31221546_36425137', 'chr17_007_36425137_41628728', 'chr17_008_41628728_46832319', 'chr17_009_46832319_52035910', 'chr17_010_52035910_57239501', 'chr17_011_57239501_62443092', 'chr17_012_62443092_67646683', 'chr17_013_67646683_72850274', 'chr17_014_72850274_78053865', 'chr17_015_78053865_83257456'])\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/same_pos_dif_reads_test/split_bams/chr17/chr17_015_78053865_83257456.bam.sorted.bam\n", + " chr17:83199840~~~~~~~`\n", + "coverage_at_pos 9\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/same_pos_dif_reads_test/split_bams/chr17/chr17_015_78053865_83257456.bam.sorted.bam\n", + " chr17:83199872~~~~~~~`\n", + "coverage_at_pos 9\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/same_pos_dif_reads_test/split_bams/chr17/chr17_015_78053865_83257456.bam.sorted.bam\n", + " chr17:83199910~~~~~~~`\n", + "coverage_at_pos 7\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/same_pos_dif_reads_test/split_bams/chr17/chr17_015_78053865_83257456.bam.sorted.bam\n", + " chr17:83199912~~~~~~~`\n", + "coverage_at_pos 7\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/same_pos_dif_reads_test/split_bams/chr17/chr17_015_78053865_83257456.bam.sorted.bam\n", + " chr17:83199821~~~~~~~`\n", + "coverage_at_pos 5\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/same_pos_dif_reads_test/split_bams/chr17/chr17_015_78053865_83257456.bam.sorted.bam\n", + " chr17:83195182~~~~~~~`\n", + "coverage_at_pos 1\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/same_pos_dif_reads_test/split_bams/chr17/chr17_015_78053865_83257456.bam.sorted.bam\n", + " chr17:83199829~~~~~~~`\n", + "coverage_at_pos 8\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/same_pos_dif_reads_test/split_bams/chr17/chr17_015_78053865_83257456.bam.sorted.bam\n", + " chr17:83199930~~~~~~~`\n", + "coverage_at_pos 4\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/same_pos_dif_reads_test/split_bams/chr17/chr17_015_78053865_83257456.bam.sorted.bam\n", + " chr17:83199867~~~~~~~`\n", + "coverage_at_pos 9\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/same_pos_dif_reads_test/split_bams/chr17/chr17_015_78053865_83257456.bam.sorted.bam\n", + " chr17:83199839~~~~~~~`\n", + "coverage_at_pos 9\n" ] }, { "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 16/16 [00:08<00:00, 1.79it/s]\n", - "100%|██████████| 16/16 [00:08<00:00, 1.82it/s]\n" + "100%|██████████| 16/16 [00:02<00:00, 6.39it/s]\n" ] }, { @@ -1838,7 +1996,7 @@ "original 32\n", "filtered 24\n", "dtype: int64\n", - "Total time to calculate coverage: 0.151 minutes\n", + "Total time to calculate coverage: 0.044 minutes\n", "Filtering..\n", "\tNumber of edits after filtering:\n", "\t24\n", @@ -1852,8 +2010,8 @@ "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", "2 final deduplicated SAILOR-formatted sites\n", "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed...\n", - "Current memory usage 21.436933MB; Peak: 22.546578MB\n", - "Time elapsed: 19.22s\n", + "Current memory usage 21.432284MB; Peak: 22.541949MB\n", + "Time elapsed: 6.11s\n", "-------------------------------\n", "Deleting intermediate files...\n", "-------------------------------\n", @@ -1901,10 +2059,47 @@ "~~~~~~~~~~~~~~~~~~\n", "Identifying edits\n", "~~~~~~~~~~~~~~~~~~\n", + "i_options range(0, 2)\n", + "j_options range(0, 3)\n", + "j_options range(3, 6)\n", + "broken_up_contigs [['chr17']]\n", "Each contig is being split into 16 subsets...\n", "contig_lengths_dict:{'chr1': 248956422, 'chr2': 242193529, 'chr3': 198295559, 'chr4': 190214555, 'chr5': 181538259, 'chr6': 170805979, 'chr7': 159345973, 'chr8': 145138636, 'chr9': 138394717, 'chr10': 133797422, 'chr11': 135086622, 'chr12': 133275309, 'chr13': 114364328, 'chr14': 107043718, 'chr15': 101991189, 'chr16': 90338345, 'chr17': 83257441, 'chr18': 80373285, 'chr19': 58617616, 'chr20': 64444167, 'chr21': 46709983, 'chr22': 50818468, 'chrX': 156040895, 'chrY': 57227415, 'chrM': 16569, 'chr1_KI270706v1_random': 175055, 'chr1_KI270707v1_random': 32032, 'chr1_KI270708v1_random': 127682, 'chr1_KI270709v1_random': 66860, 'chr1_KI270710v1_random': 40176, 'chr1_KI270711v1_random': 42210, 'chr1_KI270712v1_random': 176043, 'chr1_KI270713v1_random': 40745, 'chr1_KI270714v1_random': 41717, 'chr2_KI270715v1_random': 161471, 'chr2_KI270716v1_random': 153799, 'chr3_GL000221v1_random': 155397, 'chr4_GL000008v2_random': 209709, 'chr5_GL000208v1_random': 92689, 'chr9_KI270717v1_random': 40062, 'chr9_KI270718v1_random': 38054, 'chr9_KI270719v1_random': 176845, 'chr9_KI270720v1_random': 39050, 'chr11_KI270721v1_random': 100316, 'chr14_GL000009v2_random': 201709, 'chr14_GL000225v1_random': 211173, 'chr14_KI270722v1_random': 194050, 'chr14_GL000194v1_random': 191469, 'chr14_KI270723v1_random': 38115, 'chr14_KI270724v1_random': 39555, 'chr14_KI270725v1_random': 172810, 'chr14_KI270726v1_random': 43739, 'chr15_KI270727v1_random': 448248, 'chr16_KI270728v1_random': 1872759, 'chr17_GL000205v2_random': 185591, 'chr17_KI270729v1_random': 280839, 'chr17_KI270730v1_random': 112551, 'chr22_KI270731v1_random': 150754, 'chr22_KI270732v1_random': 41543, 'chr22_KI270733v1_random': 179772, 'chr22_KI270734v1_random': 165050, 'chr22_KI270735v1_random': 42811, 'chr22_KI270736v1_random': 181920, 'chr22_KI270737v1_random': 103838, 'chr22_KI270738v1_random': 99375, 'chr22_KI270739v1_random': 73985, 'chrY_KI270740v1_random': 37240, 'chrUn_KI270302v1': 2274, 'chrUn_KI270304v1': 2165, 'chrUn_KI270303v1': 1942, 'chrUn_KI270305v1': 1472, 'chrUn_KI270322v1': 21476, 'chrUn_KI270320v1': 4416, 'chrUn_KI270310v1': 1201, 'chrUn_KI270316v1': 1444, 'chrUn_KI270315v1': 2276, 'chrUn_KI270312v1': 998, 'chrUn_KI270311v1': 12399, 'chrUn_KI270317v1': 37690, 'chrUn_KI270412v1': 1179, 'chrUn_KI270411v1': 2646, 'chrUn_KI270414v1': 2489, 'chrUn_KI270419v1': 1029, 'chrUn_KI270418v1': 2145, 'chrUn_KI270420v1': 2321, 'chrUn_KI270424v1': 2140, 'chrUn_KI270417v1': 2043, 'chrUn_KI270422v1': 1445, 'chrUn_KI270423v1': 981, 'chrUn_KI270425v1': 1884, 'chrUn_KI270429v1': 1361, 'chrUn_KI270442v1': 392061, 'chrUn_KI270466v1': 1233, 'chrUn_KI270465v1': 1774, 'chrUn_KI270467v1': 3920, 'chrUn_KI270435v1': 92983, 'chrUn_KI270438v1': 112505, 'chrUn_KI270468v1': 4055, 'chrUn_KI270510v1': 2415, 'chrUn_KI270509v1': 2318, 'chrUn_KI270518v1': 2186, 'chrUn_KI270508v1': 1951, 'chrUn_KI270516v1': 1300, 'chrUn_KI270512v1': 22689, 'chrUn_KI270519v1': 138126, 'chrUn_KI270522v1': 5674, 'chrUn_KI270511v1': 8127, 'chrUn_KI270515v1': 6361, 'chrUn_KI270507v1': 5353, 'chrUn_KI270517v1': 3253, 'chrUn_KI270529v1': 1899, 'chrUn_KI270528v1': 2983, 'chrUn_KI270530v1': 2168, 'chrUn_KI270539v1': 993, 'chrUn_KI270538v1': 91309, 'chrUn_KI270544v1': 1202, 'chrUn_KI270548v1': 1599, 'chrUn_KI270583v1': 1400, 'chrUn_KI270587v1': 2969, 'chrUn_KI270580v1': 1553, 'chrUn_KI270581v1': 7046, 'chrUn_KI270579v1': 31033, 'chrUn_KI270589v1': 44474, 'chrUn_KI270590v1': 4685, 'chrUn_KI270584v1': 4513, 'chrUn_KI270582v1': 6504, 'chrUn_KI270588v1': 6158, 'chrUn_KI270593v1': 3041, 'chrUn_KI270591v1': 5796, 'chrUn_KI270330v1': 1652, 'chrUn_KI270329v1': 1040, 'chrUn_KI270334v1': 1368, 'chrUn_KI270333v1': 2699, 'chrUn_KI270335v1': 1048, 'chrUn_KI270338v1': 1428, 'chrUn_KI270340v1': 1428, 'chrUn_KI270336v1': 1026, 'chrUn_KI270337v1': 1121, 'chrUn_KI270363v1': 1803, 'chrUn_KI270364v1': 2855, 'chrUn_KI270362v1': 3530, 'chrUn_KI270366v1': 8320, 'chrUn_KI270378v1': 1048, 'chrUn_KI270379v1': 1045, 'chrUn_KI270389v1': 1298, 'chrUn_KI270390v1': 2387, 'chrUn_KI270387v1': 1537, 'chrUn_KI270395v1': 1143, 'chrUn_KI270396v1': 1880, 'chrUn_KI270388v1': 1216, 'chrUn_KI270394v1': 970, 'chrUn_KI270386v1': 1788, 'chrUn_KI270391v1': 1484, 'chrUn_KI270383v1': 1750, 'chrUn_KI270393v1': 1308, 'chrUn_KI270384v1': 1658, 'chrUn_KI270392v1': 971, 'chrUn_KI270381v1': 1930, 'chrUn_KI270385v1': 990, 'chrUn_KI270382v1': 4215, 'chrUn_KI270376v1': 1136, 'chrUn_KI270374v1': 2656, 'chrUn_KI270372v1': 1650, 'chrUn_KI270373v1': 1451, 'chrUn_KI270375v1': 2378, 'chrUn_KI270371v1': 2805, 'chrUn_KI270448v1': 7992, 'chrUn_KI270521v1': 7642, 'chrUn_GL000195v1': 182896, 'chrUn_GL000219v1': 179198, 'chrUn_GL000220v1': 161802, 'chrUn_GL000224v1': 179693, 'chrUn_KI270741v1': 157432, 'chrUn_GL000226v1': 15008, 'chrUn_GL000213v1': 164239, 'chrUn_KI270743v1': 210658, 'chrUn_KI270744v1': 168472, 'chrUn_KI270745v1': 41891, 'chrUn_KI270746v1': 66486, 'chrUn_KI270747v1': 198735, 'chrUn_KI270748v1': 93321, 'chrUn_KI270749v1': 158759, 'chrUn_KI270750v1': 148850, 'chrUn_KI270751v1': 150742, 'chrUn_KI270752v1': 27745, 'chrUn_KI270753v1': 62944, 'chrUn_KI270754v1': 40191, 'chrUn_KI270755v1': 36723, 'chrUn_KI270756v1': 79590, 'chrUn_KI270757v1': 71251, 'chrUn_GL000214v1': 137718, 'chrUn_KI270742v1': 186739, 'chrUn_GL000216v2': 176608, 'chrUn_GL000218v1': 161147, 'chrEBV': 171823}\n", "\tContig chr17\n", "16 total jobs\n", + "chr17:001, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:002, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:005, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:008, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:012, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:003, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", + "chr17:015, total reads: 0, counts_df: Empty DataFrame\n", + "Columns: []\n", + "Index: []\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "MD tag 2C1C6G3A1G4G47\n", "CIGAR tag 28S70M\n", @@ -1965,46 +2160,26 @@ "chr17:000, total reads: 1, counts_df: chr17\n", "edited 1\n", "total_edits 6\n", - "chr17:001, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "chr17:002, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "chr17:003, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "chr17:004, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "chr17:005, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:014, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:006, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", "chr17:007, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", - "chr17:008, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "chr17:009, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "chr17:010, total reads: 0, counts_df: Empty DataFrame\n", - "Columns: []\n", - "Index: []\n", - "chr17:011, total reads: 0, counts_df: Empty DataFrame\n", + "chr17:013, total reads: 0, counts_df: Empty DataFrame\n", "Columns: []\n", "Index: []\n", "Reads processed:\t1\n", - "Time to process reads in min:\t0.1499\n", + "Time to process reads in min:\t0.04167\n", "Read Summary:\n", "edited 1\n", "total_edits 6\n", "dtype: int64\n", "\n", + "Deleting overall_label_to_list_of_contents...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -2019,8 +2194,50 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 16/16 [00:08<00:00, 1.83it/s]\n", - "100%|██████████| 16/16 [00:07<00:00, 2.09it/s]\n" + "100%|██████████| 16/16 [00:02<00:00, 6.73it/s]\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/tax1bp3_chr17_3665556_read_test/split_bams/chr17/chr17_000_0_5203591.bam.sorted.bam\n", + " chr17:3665541~~~~~~~`\n", + "coverage_at_pos 1\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/tax1bp3_chr17_3665556_read_test/split_bams/chr17/chr17_000_0_5203591.bam.sorted.bam\n", + " chr17:3665543~~~~~~~`\n", + "coverage_at_pos 1\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/tax1bp3_chr17_3665556_read_test/split_bams/chr17/chr17_000_0_5203591.bam.sorted.bam\n", + " chr17:3665550~~~~~~~`\n", + "coverage_at_pos 1\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/tax1bp3_chr17_3665556_read_test/split_bams/chr17/chr17_000_0_5203591.bam.sorted.bam\n", + " chr17:3665554~~~~~~~`\n", + "coverage_at_pos 1\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/tax1bp3_chr17_3665556_read_test/split_bams/chr17/chr17_000_0_5203591.bam.sorted.bam\n", + " chr17:3665556~~~~~~~`\n", + "coverage_at_pos 1\n", + "~~~~~~\n", + "!!!!PAIRED END!!!!!\n", + "pos: /tscc/projects/ps-yeolab3/ekofman/sailor2//tests/strandedness_tests/tax1bp3_chr17_3665556_read_test/split_bams/chr17/chr17_000_0_5203591.bam.sorted.bam\n", + " chr17:3665561~~~~~~~`\n", + "coverage_at_pos 1\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + "100%|██████████| 16/16 [00:02<00:00, 6.51it/s]\n" ] }, { @@ -2032,7 +2249,7 @@ "original 6\n", "filtered 6\n", "dtype: int64\n", - "Total time to calculate coverage: 0.132 minutes\n", + "Total time to calculate coverage: 0.043 minutes\n", "Filtering..\n", "\tNumber of edits after filtering:\n", "\t6\n", @@ -2046,8 +2263,8 @@ "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", "1 final deduplicated SAILOR-formatted sites\n", "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/hg38_gencode.v35.annotation.genes.bed...\n", - "Current memory usage 21.405846MB; Peak: 22.51619MB\n", - "Time elapsed: 17.81s\n", + "Current memory usage 21.403118MB; Peak: 22.513332MB\n", + "Time elapsed: 5.99s\n", "-------------------------------\n", "Deleting intermediate files...\n", "-------------------------------\n", @@ -2098,11 +2315,15 @@ "~~~~~~~~~~~~~~~~~~\n", "Identifying edits\n", "~~~~~~~~~~~~~~~~~~\n", + "i_options range(0, 2)\n", + "j_options range(0, 3)\n", + "j_options range(3, 6)\n", + "broken_up_contigs [['18']]\n", "Each contig is being split into 1 subsets...\n", "\tContig 18\n", "1 total jobs\n", "Reads processed:\t10\n", - "Time to process reads in min:\t0.0216\n", + "Time to process reads in min:\t0.02795\n", "Read Summary:\n", "edited 6\n", "no_edits 2\n", @@ -2110,6 +2331,7 @@ "total_edits 6\n", "dtype: int64\n", "\n", + "Deleting overall_label_to_list_of_contents...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -2122,8 +2344,8 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 1/1 [00:01<00:00, 1.26s/it]\n", - "100%|██████████| 1/1 [00:01<00:00, 1.19s/it]\n" + "100%|██████████| 1/1 [00:01<00:00, 1.64s/it]\n", + "100%|██████████| 1/1 [00:01<00:00, 1.68s/it]\n" ] }, { @@ -2135,7 +2357,7 @@ "original 6\n", "filtered 4\n", "dtype: int64\n", - "Total time to calculate coverage: 0.02 minutes\n", + "Total time to calculate coverage: 0.028 minutes\n", "Filtering..\n", "\tNumber of edits after filtering:\n", "\t4\n", @@ -2149,8 +2371,8 @@ "0 rows had coverage of 0 or more edits than coverage... filtering these out, but look into them...\n", "2 final deduplicated SAILOR-formatted sites\n", "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/cellranger-GRCh38-3.0.0.annotation.genes.bed...\n", - "Current memory usage 21.319782MB; Peak: 22.42987MB\n", - "Time elapsed: 3.36s\n", + "Current memory usage 21.317943MB; Peak: 22.4279MB\n", + "Time elapsed: 4.15s\n", "++++++\n", "Done!\n", "++++++\n" @@ -2186,7 +2408,7 @@ }, { "cell_type": "code", - "execution_count": 20, + "execution_count": 32, "id": "57192b28-b498-4f81-bdcd-0d4d14f644ff", "metadata": { "scrolled": true @@ -2243,11 +2465,15 @@ "~~~~~~~~~~~~~~~~~~\n", "Identifying edits\n", "~~~~~~~~~~~~~~~~~~\n", + "i_options range(0, 2)\n", + "j_options range(0, 3)\n", + "j_options range(3, 6)\n", + "broken_up_contigs [['9']]\n", "Each contig is being split into 16 subsets...\n", "\tContig 9\n", "16 total jobs\n", "Reads processed:\t31\n", - "Time to process reads in min:\t0.15101\n", + "Time to process reads in min:\t0.0404\n", "Read Summary:\n", "edited 31\n", "total_edits 99\n", @@ -2266,14 +2492,15 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 16/16 [00:08<00:00, 1.82it/s]\n" + "100%|██████████| 16/16 [00:02<00:00, 6.95it/s]\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ - "Total time to concat and write bams: 0.141 minutes\n", + "Total time to concat and write bams: 0.041 minutes\n", + "Deleting overall_label_to_list_of_contents...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -2287,8 +2514,8 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 1/1 [00:08<00:00, 8.23s/it]\n", - "100%|██████████| 4/4 [00:07<00:00, 2.00s/it]\n" + "100%|██████████| 1/1 [00:02<00:00, 2.39s/it]\n", + "100%|██████████| 4/4 [00:02<00:00, 1.74it/s]\n" ] }, { @@ -2300,7 +2527,7 @@ "original 99\n", "filtered 99\n", "dtype: int64\n", - "Total time to calculate coverage: 0.138 minutes\n", + "Total time to calculate coverage: 0.04 minutes\n", "Filtering..\n", "\tNumber of edits after filtering:\n", "\t99\n", @@ -2311,8 +2538,8 @@ "Adding strand-specific conversion...\n", "\n", "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/cellranger-mm10-3.0.0.annotation.genes.bed...\n", - "Current memory usage 21.632608MB; Peak: 22.739356MB\n", - "Time elapsed: 26.69s\n", + "Current memory usage 21.626729MB; Peak: 22.733417MB\n", + "Time elapsed: 8.33s\n", "-------------------------------\n", "Deleting intermediate files...\n", "-------------------------------\n", @@ -2364,11 +2591,15 @@ "~~~~~~~~~~~~~~~~~~\n", "Identifying edits\n", "~~~~~~~~~~~~~~~~~~\n", + "i_options range(0, 2)\n", + "j_options range(0, 3)\n", + "j_options range(3, 6)\n", + "broken_up_contigs [['6']]\n", "Each contig is being split into 4 subsets...\n", "\tContig 6\n", "4 total jobs\n", "Reads processed:\t13\n", - "Time to process reads in min:\t0.14743\n", + "Time to process reads in min:\t0.03921\n", "Read Summary:\n", "edited 3\n", "no_edits 10\n", @@ -2388,7 +2619,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 4/4 [00:08<00:00, 2.14s/it]\n" + "100%|██████████| 4/4 [00:02<00:00, 1.78it/s]\n" ] }, { @@ -2396,7 +2627,8 @@ "output_type": "stream", "text": [ "\t400 suffixes\n", - "Total time to concat and write bams: 0.337 minutes\n", + "Total time to concat and write bams: 0.282 minutes\n", + "Deleting overall_label_to_list_of_contents...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", "Calculating coverage at edited sites, minimum read quality is 0...\n", "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n", @@ -2409,8 +2641,8 @@ "name": "stderr", "output_type": "stream", "text": [ - "100%|██████████| 1/1 [00:19<00:00, 19.88s/it]\n", - "100%|██████████| 400/400 [00:10<00:00, 36.66it/s] \n" + "100%|██████████| 1/1 [00:16<00:00, 16.82s/it]\n", + "100%|██████████| 400/400 [00:04<00:00, 80.74it/s] \n" ] }, { @@ -2422,7 +2654,7 @@ "original 3\n", "filtered 3\n", "dtype: int64\n", - "Total time to calculate coverage: 0.187 minutes\n", + "Total time to calculate coverage: 0.085 minutes\n", "Filtering..\n", "\tNumber of edits after filtering:\n", "\t3\n", @@ -2433,8 +2665,8 @@ "Adding strand-specific conversion...\n", "\n", "Annotating sites with GTF information from /tscc/projects/ps-yeolab3/ekofman/sailor2//annotations/cellranger-mm10-3.0.0.annotation.genes.bed...\n", - "Current memory usage 21.511415MB; Peak: 22.623014MB\n", - "Time elapsed: 41.90s\n", + "Current memory usage 21.518014MB; Peak: 22.629871MB\n", + "Time elapsed: 26.42s\n", "-------------------------------\n", "Deleting intermediate files...\n", "-------------------------------\n", @@ -2480,7 +2712,7 @@ }, { "cell_type": "code", - "execution_count": 22, + "execution_count": 34, "id": "f5c3ed3e-13dd-4399-924e-3d1ac17ce387", "metadata": {}, "outputs": [ @@ -2843,6 +3075,14 @@ "metadata": {}, "outputs": [], "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "3d014edd-3e67-4b8f-8b97-371a6f7a8ebe", + "metadata": {}, + "outputs": [], + "source": [] } ], "metadata": { diff --git a/tests/strandedness_tests/unstranded_pair_test/final_filtered_site_info.tsv b/tests/strandedness_tests/unstranded_pair_test/final_filtered_site_info.tsv index 6fc92f0..a554c94 100644 --- a/tests/strandedness_tests/unstranded_pair_test/final_filtered_site_info.tsv +++ b/tests/strandedness_tests/unstranded_pair_test/final_filtered_site_info.tsv @@ -1,15 +1,15 @@ site_id barcode contig position ref alt strand count coverage conversion strand_conversion -no_barcode_Citrine.dna_432_C_T_+ no_barcode Citrine.dna 432 C T + 1 22 C>T C>T no_barcode_Citrine.dna_437_A_G_+ no_barcode Citrine.dna 437 A G + 1 22 A>G A>G -no_barcode_Citrine.dna_438_C_A_+ no_barcode Citrine.dna 438 C A + 1 22 C>A C>A -no_barcode_Citrine.dna_439_A_G_+ no_barcode Citrine.dna 439 A G + 1 22 A>G A>G -no_barcode_Citrine.dna_428_A_G_+ no_barcode Citrine.dna 428 A G + 1 20 A>G A>G +no_barcode_Citrine.dna_21_G_A_+ no_barcode Citrine.dna 21 G A + 2 2 G>A G>A no_barcode_Citrine.dna_454_T_G_+ no_barcode Citrine.dna 454 T G + 1 14 T>G T>G -no_barcode_Citrine.dna_411_C_A_+ no_barcode Citrine.dna 411 C A + 1 18 C>A C>A -no_barcode_Citrine.dna_441_C_A_+ no_barcode Citrine.dna 441 C A + 1 22 C>A C>A -no_barcode_Citrine.dna_414_G_C_+ no_barcode Citrine.dna 414 G C + 1 18 G>C G>C no_barcode_Citrine.dna_431_A_G_+ no_barcode Citrine.dna 431 A G + 1 22 A>G A>G +no_barcode_Citrine.dna_428_A_G_+ no_barcode Citrine.dna 428 A G + 1 20 A>G A>G +no_barcode_Citrine.dna_432_C_T_+ no_barcode Citrine.dna 432 C T + 1 22 C>T C>T +no_barcode_Citrine.dna_439_A_G_+ no_barcode Citrine.dna 439 A G + 1 22 A>G A>G +no_barcode_Citrine.dna_441_C_A_+ no_barcode Citrine.dna 441 C A + 1 22 C>A C>A no_barcode_Citrine.dna_430_T_G_+ no_barcode Citrine.dna 430 T G + 2 22 T>G T>G no_barcode_Citrine.dna_435_C_T_+ no_barcode Citrine.dna 435 C T + 22 22 C>T C>T -no_barcode_Citrine.dna_21_G_A_+ no_barcode Citrine.dna 21 G A + 2 2 G>A G>A no_barcode_Citrine.dna_149_C_G_+ no_barcode Citrine.dna 149 C G + 1 2 C>G C>G +no_barcode_Citrine.dna_411_C_A_+ no_barcode Citrine.dna 411 C A + 1 18 C>A C>A +no_barcode_Citrine.dna_438_C_A_+ no_barcode Citrine.dna 438 C A + 1 22 C>A C>A +no_barcode_Citrine.dna_414_G_C_+ no_barcode Citrine.dna 414 G C + 1 18 G>C G>C From de24816dba63f845bbd8aa9474873595f62cce33 Mon Sep 17 00:00:00 2001 From: Eric Kofman Date: Mon, 12 Aug 2024 15:00:37 -0700 Subject: [PATCH 10/10] code cleanup --- marine.py | 50 ++++++++++++++++++++++++++++++-------------------- 1 file changed, 30 insertions(+), 20 deletions(-) diff --git a/marine.py b/marine.py index 77d3104..b05a8b0 100755 --- a/marine.py +++ b/marine.py @@ -252,9 +252,27 @@ def collate_edit_info_shards(output_folder): print("\tShape of collated edit info df: {}".format(collated_df.shape)) print("\tColumns of collated edit info df: {}".format(collated_df.columns)) return collated_df + +def get_broken_up_contigs(contigs, num_per_sublist): + broken_up_contigs = [] + + i_options = range((math.ceil(len(contigs)/num_per_sublist)) + 1) + + for i in i_options: + contig_sublist = [] + j_options = range(i*num_per_sublist, (i*num_per_sublist) + num_per_sublist) + + for j in j_options: + if j < len(contigs): + contig_sublist.append(contigs[j]) + + if len(contig_sublist) > 0: + broken_up_contigs.append(contig_sublist) + return broken_up_contigs def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_intervals_per_contig=16, strandedness=True, barcode_tag="CB", paired_end=False, barcode_whitelist_file=None, verbose=False, coverage_only=False, filtering_only=False, annotation_only=False, bedgraphs_list=[], sailor=False, min_base_quality = 15, min_read_quality = 0, min_dist_from_end = 10, max_edits_per_read = None, cores = 64, number_of_expected_bams=4, keep_intermediate_files=False, + num_per_sublist=6, skip_coverage=False): print_marine_logo() @@ -301,31 +319,18 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ if len(contigs) == 0: + # Take care of the case where no contigs are specified, so that all contigs available are processed broken_up_contigs = [[]] else: - broken_up_contigs = [] - if barcode_whitelist_file: # For single cell sequencing we will only process this many contigs at a time - num_per_sublist = 6 + broken_up_contigs = get_broken_up_contigs(contigs, num_per_sublist) + else: # For bulk sequencing we will just process all contigs - num_per_sublist = len(contigs) - - i_options = range((math.ceil(len(contigs)/num_per_sublist)) + 1) - #print('i_options', i_options) - for i in i_options: - contig_sublist = [] - j_options = range(i*num_per_sublist, (i*num_per_sublist) + num_per_sublist) - #print('j_options', j_options) - for j in j_options: - if j < len(contigs): - contig_sublist.append(contigs[j]) - - if len(contig_sublist) > 0: - broken_up_contigs.append(contig_sublist) - #print('broken_up_contigs', broken_up_contigs) + broken_up_contigs = [contigs] + print('Contig groups to be processed:', broken_up_contigs) overall_counts_summary_df = defaultdict(lambda:0) overall_total_reads_processed = 0 @@ -569,6 +574,7 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in parser.add_argument('--bedgraphs', type=str, default=None, help='Conversions for which to output a bedgraph for non-single cell runs, e.g. CT, AI') parser.add_argument('--verbose', dest='verbose', action='store_true') parser.add_argument('--keep_intermediate_files', dest='keep_intermediate_files', action='store_true') + parser.add_argument('--num_per_sublist', dest='num_per_sublist', type=int, default=6) parser.add_argument('--paired_end', dest='paired_end', action='store_true', help='Assess coverage taking without double-counting paired end overlapping regions... slower but more accurate. Edits by default are only counted once for an entire pair, whether they show up on both ends or not.') parser.add_argument('--skip_coverage', dest='skip_coverage', action='store_true') parser.add_argument('--max_edits_per_read', type=int, default=None) @@ -603,6 +609,8 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in num_intervals_per_contig = args.num_intervals_per_contig + num_per_sublist = args.num_per_sublist + # Convert bedgraphs argument into list of conversions if bedgraphs: if barcode_tag in ['CB', 'IB']: @@ -650,7 +658,8 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in "\tCores:\t{}".format(cores), "\tVerbose:\t{}".format(verbose), "\tKeep intermediate files:\t{}".format(keep_intermediate_files), - "\tSkip coverage?:\t{}".format(skip_coverage) + "\tSkip coverage?:\t{}".format(skip_coverage), + "\tFor single-cell: \t{} contigs at at time\n".format(num_per_sublist) ]) # Whether to only run for certain contigs @@ -684,7 +693,8 @@ def run(bam_filepath, annotation_bedfile_path, output_folder, contigs=[], num_in verbose = verbose, number_of_expected_bams=num_intervals_per_contig, skip_coverage=skip_coverage, - keep_intermediate_files=keep_intermediate_files + keep_intermediate_files=keep_intermediate_files, + num_per_sublist=num_per_sublist ) \ No newline at end of file