autofix bulk for sc

YeoLab · Nov 21, 2024 · 8303fba · 8303fba
1 parent dbede5a
commit 8303fba
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/read_process.py b/src/read_process.py
@@ -131,7 +131,7 @@ def get_read_information(read, contig, barcode_tag='CB', verbose=False, stranded
     is_read1 = read.is_read1
     is_read2 = read.is_read2
 
-    if barcode_tag:
+    if read.has_tag('CB'): # ie == 'CB'
         # Assuming R2 from 10x data contains the seqence 
         is_read1 = False
         is_read2 = True