major.tick.percentage is not used any more

[cesarforteslima]

Hi,
I was using shinyCircos like two weeks ago, and I'm now getting this error message and I cannot plot anything anymore.

major.tick.percentage is not used anymore, please directly use the argument major.tick.length.

I think the error is from the function below but I'm not sure.

circos.genomicInitialize.new <-
function (data, sector.names = NULL, major.by = NULL, unit = "", plotType, tickLabelsStartFromZero = TRUE, track.height = 0.05,
...)

                                  if(all(c("axis", "labels") %in% plotType)){
                                    circos.axis(h = 0, major.at = major.at, labels = major.tick.labels, 
                                                labels.cex = 0.49 * par("cex"), labels.facing = "clockwise", 
                                                **major.tick.percentage** = 0.2)
                                    circos.text(mean(xlim), 1.2, labels = sector.names[sector.index], 
                                                cex = par("cex")-0.1, adj = c(0.5, -0.1*par("cex")*6-(par("cex")-1)*3), niceFacing = TRUE)
                                  }
                                  else if("labels" %in% plotType){
                                    circos.text(mean(xlim), 0, labels = sector.names[sector.index], 
                                                cex = par("cex")-0.1, adj = c(0.5, -0.1*par("cex")*6-(par("cex")-1)*3), niceFacing = TRUE)
                                  }
                                  else if("axis" %in% plotType){
                                    circos.axis(h = 0, major.at = major.at, labels = major.tick.labels, 
                                                labels.cex = 0.49 * par("cex"), labels.facing = "clockwise", 
                                                **major.tick.percentage** = 0.2)

Thanks in advance for your help.

Best,
Cesar

[choman-star]

Hi Cesar, did you ever get a fix for this? I have started having the same issue