Directory Organisation

Background

There is a very simple directory structure.
💽 for ♻️ of experimental data to make it FAIR

./ directory

readme.md - general background
the subdirectories are listed below

source directory

ExperimentChecklists2Json.py - script that generates the experiment checklist template and
test_ExperimentChecklists2Json.py

docs directory

ExperimentChecklistTechnicalDoc.md - more technical background
directory_organisation_explanation.md
ExptChecklistpng.png

data directory

./examples:

./data/input: - JSON file that specifies for all the experiments types what fields and values are needed.

This is what to edit if one wishes to make a change

ExperimentChecklistIn.json
test_ExperimentChecklistIn.json

schema: - these are the schemas that the filled out template will be tested against.

GENOMIC_schema.json
METABARCODING_schema.json
METATRANSCRIPTOMIC_schema.json
TEST_schema.json
TEST_schema_hack.json
TEST_type_schema.json
TRANSCRIPTOMIC_schema.json

output: - - automatically generated template

GENOMIC.json
METABARCODING.json
METATRANSCRIPTOMIC.json
TEST.json
TEST_hack.json
TEST_type.json
TRANSCRIPTOMIC.json

output_test: - automatically generated template

GENOMIC.json
METABARCODING.json
METATRANSCRIPTOMIC.json
TEST.json
TEST_type.json
TRANSCRIPTOMIC.json