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hardcoded_gff_files.tsv
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# Found in "Filtered Models ('best')":
Pyrtr1 Pyrtr1.filtered_proteins.broadModels.gff3.gz
Rhior3 Rhior3.filtered_proteins.BroadGene.gff3.gz
Malgl1 Malgl1.filtered_proteins.PGModels1.gff3.gz
Cryne_H99_1 Cryne_H99_1.filtered_proteins.BroadModels1.gff3.gz
Copci1 Copci1.filtered_proteins.BroadModels1.gff3.gz
#
# Found in "All models, Filtered and Not":
Calor1 Calor1.filtered_proteins.ExternalModels.gff3.gz
Glost2 Glost2.filtered_proteins.FilteredModels1.gff3.gz
Stano2 Stano2.filtered_proteins.ExternalModels.gff3.gz
Talma1_2 Talma1_2.filtered_proteins.ExternalModels.gff3.gz
Macph1 Macph1.filtered_proteins.ExternalModels.gff3.gz
Talst1_2 Talst1_2.filtered_proteins.JCVIModels.gff3.gz
Aspsac1 Aspsac1.filtered_proteins.FilteredModels1.gff3.gz
Aspuva1 Aspuva1.filtered_proteins.FilteredModels1.gff3.gz
Uncre1 Uncre1.filtered_proteins.BroadModels.gff3.gz
Pendi1 Pendi1.filtered_proteins.ExternalModels.gff3.gz
Micca1 Micca1.filtered_proteins.BroadModels.gff3.gz
Triru1 Triru1.filtered_proteins.BroadModels.gff3.gz
Triver1 Triver1.filtered_proteins.ExternalModels.gff3.gz
Artbe1 Artbe1.filtered_proteins.ExternalModels.gff3.gz
Aspcl1 Aspcl1.filtered_proteins.ExternalModels.gff3.gz
Aspni_NRRL3_1 Aspni_NRRL3_1.filtered_proteins.ExternalModels.gff3.gz
Asplac1 Asplac1.filtered_proteins.FilteredModels1.gff3.gz
Aspni_DSM_1 Aspni_DSM_1.filtered_proteins.ExternalModels.gff3.gz
Aspvad1 Aspvad1.filtered_proteins.FilteredModels1.gff3.gz
Aspeuc1 Aspeuc1.filtered_proteins.FilteredModels1.gff3.gz
Aspneo1 Aspneo1.filtered_proteins.FilteredModels1.gff3.gz
Aspka1_1 Aspka1_1.filtered_proteins.ExternalModels.gff3.gz
Asphet1 Asphet1.all_proteins.FilteredModels1.gff3.gz.tar.gz
Penox1 Penox1.filtered_proteins.ExternalModels.gff3.gz
Fusgr1 Fusgr1.filtered_proteins.ExternalModels.gff3.gz
PenchWisc1_1 PenchWisc1_1.filtered_proteins.ExternalModels.gff3.gz
Aspfl1 Aspfl1.filtered_proteins.ExternalModels.gff3.gz
Clagr3 Clagr3.filtered_proteins.Maker.gff3.gz
Hyspu1_1 Hyspu1_1_ExternalModels_2023-05-05.gff3.gz
Glalo1 Glalo1.filtered_proteins.ExternalModels.gff3.gz
Pseel1 Pseel1.filtered_proteins.ExternalModels.gff3.gz
Cocim1 Cocim1.filtered_proteins.BroadModels.gff3.gz
Lepmu1 Lepmu1.filtered_proteins.ExternalModels.gff3.gz
Rhyru1_1 Rhyru1_1_ExternalModels_2023-05-05.gff3.gz
Clafu1 Clafu1.filtered_proteins.ExternalModels.gff3.gz
Aspscl1 Aspscl1.filtered_proteins.FilteredModels1.gff3.gz
Eutla1 Eutla1.filtered_proteins.ExternalModels.gff3.gz
Apimo1 Apimo1.filtered_proteins.FilteredModels1.gff3.gz
Exoaq1 Exoaq1_GeneCatalog_20160901.gff3.gz
Aspte1 Aspte1.filtered_proteins.ExternalModels.gff3.gz
#
# Only choice
Clafu1 Clafu1_GeneCatalog_genes_20110826.gff.gz
#
# Old list. Was used to improve compatibility with antiSMASH's usage of bcbio.gff, but unclear if it's the best file
#Pacta1_2 Pacta1_2.filtered_proteins.Filteredmodels2.gff3.gz
#Pench1 Pench1.filtered_proteins.FilteredModels1.gff3.gz
#Cocvi1 Cocvi1.filtered_proteins.FilteredModels1.gff3.gz
#Galma1 Galma1.filtered_proteins.FilteredModels2.gff3.gz
#Cocca1 Cocca1.filtered_proteins.FilteredModels1.gff3.gz
#Clafu1 Clafu1.filtered_proteins.ExternalModels.gff3.gz
#Coclu2 Coclu2.filtered_proteins.FilteredModels1.gff3.gz
#Apimo1 Apimo1.filtered_proteins.FilteredModels1.gff3.gz
#Neofi1 Neofi1.filtered_proteins.ExternalModels.gff3.gz
#Umbra1 Umbra1.filtered_proteins.FilteredModels1.gff3.gz
#Aspzo1 Aspzo1.filtered_proteins.GeneCatalog_2013_12_03_15_38.gff3.gz
#Melsp1 Melsp1.filtered_proteins.FilteredModels1.gff3.gz
#Yarli1 Yarli1.filtered_proteins.ExternalModels.gff3.gz
#Aspcl1 Aspcl1.filtered_proteins.ExternalModels.gff3.gz
#Monru1 Monru1.filtered_proteins.FilteredModels1.gff3.gz
#Pneji1 Pneji1.filtered_proteins.ExternalModels.gff3.gz
#Theau1 Theau1.filtered_proteins.FilteredModels1.gff3.gz
#Aspfl1 Aspfl1.filtered_proteins.ExternalModels.gff3.gz
#Tapde1_1 Tapde1_1.filtered_proteins.ExternalModels.gff3.gz
#Antlo1 Antlo1.filtered_proteins.ExternalModels.gff3.gz
#Aspni_DSM_1 Aspni_DSM_1.filtered_proteins.ExternalModels.gff3.gz
#Ompol1 Ompol1.filtered_proteins.ExternalModels.gff3.gz
#Neopa1 Neopa1.filtered_proteins.ExternalModels.gff3.gz
#Pucst1 Pucst1.filtered_proteins.ExternalModels.gff3.gz
#Pyrco1 Pyrco1.filtered_proteins.ExternalModels.gff3.gz
#Uncre1 Uncre1.filtered_proteins.BroadModels.gff3.gz
#Rhiso1 Rhiso1.filtered_proteins.ExternalModels.gff3.gz
#Veral1 Veral1.filtered_proteins.BroadModels.gff3.gz
#Monpe1_1 Monpe1_1.filtered_proteins.ExternalModels.gff3.gz
#Entbi1 Entbi1.filtered_proteins.ExternalModels.gff3.gz
#Psean1_1 Psean1_1.filtered_proteins.ExternalModels.gff3.gz
#PenchWisc1_1 PenchWisc1_1.filtered_proteins.ExternalModels.gff3.gz
#Talst1_2 Talst1_2.filtered_proteins.JCVIModels.gff3.gz
#Talma1_2 Talma1_2.filtered_proteins.ExternalModels.gff3.gz
#Picst3 Picst3.filtered_proteins.GeneCatalog.gff3.gz
#Altal1 Altal1.FilteredModels1.gff3.gz
#Glost2 Glost2.filtered_proteins.FilteredModels1.gff3.gz
#Blade1 Blade1.filtered_proteins.BroadModels.gff3.gz
#Sclhys1_1 Sclhys1_1_Primary_Alleles.gff.gz
#Catan2 Catan2_primary_alleles.gff3
#Aspuva1 Aspuva1.filtered_proteins.FilteredModels1.gff3.gz
#Aspeuc1 Aspeuc1.filtered_proteins.FilteredModels1.gff3.gz
#Asphet1 Asphet1.filtered_proteins.FilteredModels1.gff3.gz
#Aspscl1 Aspscl1.filtered_proteins.FilteredModels1.gff3.gz
#Aspneo1 Aspneo1.filtered_proteins.FilteredModels1.gff3.gz
#Aspsac1 Aspsac1.filtered_proteins.FilteredModels1.gff3.gz
#Asplac1 Asplac1.filtered_proteins.FilteredModels1.gff3.gz
#Blugra3_16 Blugra3_16_GeneCatalog_20200602.gff3.gz
#LacbiD101_1 LacbiD101_1.filtered_proteins.FilteredModels1.gff3.gz
#Tubma1 Tubma1.filtered_proteins.FilteredModels3.gff3.gz
#Seppo1 Seppo1.filtered_proteins.FilteredModels1.gff3.gz