DESCRIPTION

Package: cobrar
Title: Constraint-Based Metabolic Network Analysis in R
Version: 0.1.1
Authors@R: 
    c(person("Silvio", "Waschina", email = "s.waschina@nutrinf.uni-kiel.de", role = c("aut", "cre"),
             comment = c(ORCID = "0000-0002-6290-3593")),
      person("Johannes", "Zimmermann", role = c("aut"),
             comment = c(ORCID = "0000-0002-5041-1954")),
      person("Sina", "Zimmermann", role = c("aut"),
             comment = c(ORCID = "0009-0005-0537-4970"))
      )
URL: https://github.com/Waschina/cobrar, https://waschina.github.io/cobrar/
Description: Structures and functions to perform constraint-based metabolic network analysis, e.g., the prediction of metabolic fluxes using Flux Balance Analysis (FBA).
Depends:
    Matrix
License: GPL (>= 3)
SystemRequirements:
    libSBML (>= 5.16),
    GLPK (>= 4.65)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
LinkingTo: 
    Rcpp,
    RcppArmadillo
Imports: 
    Rcpp,
    methods
Suggests: 
    knitr,
    rmarkdown,
    ggplot2
VignetteBuilder: knitr
Collate: 
    'ConstraintsClass.R'
    'FluxPredictionClass.R'
    'LPproblemClass.R'
    'LPproblem_glpkClass.R'
    'ModelOrgClass.R'
    'ModelCommClass.R'
    'RcppExports.R'
    'annotation.R'
    'checkId.R'
    'chemoinformatics.R'
    'cobrar.R'
    'deadEndMetabolites.R'
    'fba.R'
    'findExchReact.R'
    'fixBMRatios.R'
    'fluxBMCoupling.R'
    'fluxdist_analysis.R'
    'fva.R'
    'geneDel.R'
    'guessBMReaction.R'
    'io.R'
    'joinModels.R'
    'model_modifications.R'
    'parseBoolean.R'
    'pfba.R'
    'pfba_heuristic.R'
    'printers.R'