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Subtype-specific multi-omics predictors of clinical outcomes after neoadjuvant treatment in breast cancer

This github repository contains the codes for data analysis. The scripts are organised into seven folders:

  1. clinical: related to Figure 1

  2. genome: related to Figure 2

  3. epigenome: related to Figure 3

  4. transcriptome: related to Figure 4

  5. proteome: related to Figure 5

  6. machine_learning: related to Figure 6