AR28B no btl file for first cast, need to get bottle metadata from LTER_sample_log.xls

[sbeaulieu]

We literally did not receive a btl file for AR28B cast 1. I think the present API workflow needs the btl file to obtain bottle metadata. In the absence of btl file, the API output skips nutrients without bottle metadata. Luckily, the Sosik lab includes some bottle metadata in their LTER_sample_log.xls, i.e., bottle number and target depth. For this cruise, cast 1, there should be 3 bottles sampled for nutrients each with 2 replicates. Handwritten log may include times when bottles tripped.

[ecrockford]

There's no bottle file because we had to trip the niskins manually via the CTD deck box because something was messed up on the computer. On the hand written CTD cast sheet for a few of the niskins tripped there are scan counts of when they were tripped which could potentially be used for making a bottle file

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On 10/21/2019 1:46 PM, Stace Beaulieu wrote: We literally did not receive a btl file for AR28B cast 1. I think the present API workflow needs the btl file to obtain bottle metadata. In the absence of btl file, the API output skips nutrients without bottle metadata. Luckily, the Sosik lab includes some bottle metadata in their LTER_sample_log.xls, i.e., bottle number and target depth. For this cruise, cast 1, there should be 3 bottles sampled for nutrients each with 2 replicates. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#20?email_source=notifications&email_token=ADMUKXIAIWMUWR4R4AUKH3TQPXTFTA5CNFSM4JDCD6YKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HTILUSQ>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADMUKXJGFMSCG4ZWRJJ4F2DQPXTFTANCNFSM4JDCD6YA>.

[joefutrelle]

Check if OOI has a revised bottle metadata file for this cast.

[ecrockford]

OOI does not have a revised bottle file in alfresco. Not in raw or processed directories.
OOI > Coastal Pioneer Array > Cruise Data > Pioneer-10_AR28_2018-03-23 > Ship Data > Leg 2 (AR28b) > ctd > process
OOI > Coastal Pioneer Array > Cruise Data > Pioneer-10_AR28_2018-03-23 > Ship Data > Leg 2 (AR28b) > ctd

They don't really care about this cast because it was at an LTER site, not an OOI official cast.

[joefutrelle]

See #35 #36

[joannekoch]

With #103 fix, ar28b_nut.csv now includes 3 bottles sampled for cast 1 for nutrients each with 2 replicates. The sample_ids are 525, 526, 527, 528, 416, 417.