We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Hi,
I have a problem downloading both from pubmlst and cgmlst: I have Julia 1.6, downloaded and installed manually, then tried the example:
src/mentalist download_pubmlst -k 31 -o campy_mlst_fasta_files -s 28 --db campy_mlst.db ERROR: LoadError: LoadError: LoadError: On worker 2: TypeError: in Type{...} expression, expected UnionAll, got Type{Mer{DNAAlphabet{2}, 31}} Stacktrace: [1] top-level scope @ none:1 [2] eval @ ./boot.jl:360 [3] #103 @ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/process_messages.jl:274 [4] run_work_thunk @ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/process_messages.jl:63 [5] run_work_thunk @ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/process_messages.jl:72 [6] #96 @ ./task.jl:411
...and 1 more exception.
Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:369 [2] macro expansion @ ./task.jl:388 [inlined] [3] remotecall_eval(m::Module, procs::Vector{Int64}, ex::Expr) @ Distributed /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/macros.jl:223 [4] top-level scope @ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/macros.jl:207 [5] include(fname::String) @ Base.MainInclude ./client.jl:444 [6] top-level scope @ ~/Desktop/MentaLiST-master/src/build_db_functions.jl:8 [7] include(fname::String) @ Base.MainInclude ./client.jl:444 [8] top-level scope @ ~/Desktop/MentaLiST-master/src/mentalist:345 in expression starting at /home/mor/Desktop/MentaLiST-master/src/db_graph.jl:12 in expression starting at /home/mor/Desktop/MentaLiST-master/src/build_db_functions.jl:8 in expression starting at /home/mor/Desktop/MentaLiST-master/src/mentalist:323
I also tried cgmlst for my chosen bacteria: src/mentalist download_cgmlst --db acinetobacter -k 20 -o acinetobacter.db -s 3956907 ERROR: LoadError: LoadError: LoadError: TaskFailedException
nested task error: TypeError: in Type{...} expression, expected UnionAll, got Type{Mer{DNAAlphabet{2}, 31}} Stacktrace: [1] top-level scope @ none:1 [2] eval @ ./boot.jl:360 [inlined] [3] (::Distributed.var"#155#156"{Module, Expr})() @ Distributed ./task.jl:411
Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:369 [2] macro expansion @ ./task.jl:388 [inlined] [3] remotecall_eval(m::Module, procs::Vector{Int64}, ex::Expr) @ Distributed /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/macros.jl:223 [4] top-level scope @ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/macros.jl:207 [5] include(fname::String) @ Base.MainInclude ./client.jl:444 [6] top-level scope @ ~/Desktop/MentaLiST-master/src/build_db_functions.jl:8 [7] include(fname::String) @ Base.MainInclude ./client.jl:444 [8] top-level scope @ ~/Desktop/MentaLiST-master/src/mentalist:357 in expression starting at /home/mor/Desktop/MentaLiST-master/src/db_graph.jl:12 in expression starting at /home/mor/Desktop/MentaLiST-master/src/build_db_functions.jl:8 in expression starting at /home/mor/Desktop/MentaLiST-master/src/mentalist:323
any help will be appreciated
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Hi,
I have a problem downloading both from pubmlst and cgmlst:
I have Julia 1.6, downloaded and installed manually, then tried the example:
src/mentalist download_pubmlst -k 31 -o campy_mlst_fasta_files -s 28 --db campy_mlst.db
ERROR: LoadError: LoadError: LoadError: On worker 2:
TypeError: in Type{...} expression, expected UnionAll, got Type{Mer{DNAAlphabet{2}, 31}}
Stacktrace:
[1] top-level scope
@ none:1
[2] eval
@ ./boot.jl:360
[3] #103
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/process_messages.jl:274
[4] run_work_thunk
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/process_messages.jl:63
[5] run_work_thunk
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/process_messages.jl:72
[6] #96
@ ./task.jl:411
...and 1 more exception.
Stacktrace:
[1] sync_end(c::Channel{Any})
@ Base ./task.jl:369
[2] macro expansion
@ ./task.jl:388 [inlined]
[3] remotecall_eval(m::Module, procs::Vector{Int64}, ex::Expr)
@ Distributed /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/macros.jl:223
[4] top-level scope
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/macros.jl:207
[5] include(fname::String)
@ Base.MainInclude ./client.jl:444
[6] top-level scope
@ ~/Desktop/MentaLiST-master/src/build_db_functions.jl:8
[7] include(fname::String)
@ Base.MainInclude ./client.jl:444
[8] top-level scope
@ ~/Desktop/MentaLiST-master/src/mentalist:345
in expression starting at /home/mor/Desktop/MentaLiST-master/src/db_graph.jl:12
in expression starting at /home/mor/Desktop/MentaLiST-master/src/build_db_functions.jl:8
in expression starting at /home/mor/Desktop/MentaLiST-master/src/mentalist:323
I also tried cgmlst for my chosen bacteria:
src/mentalist download_cgmlst --db acinetobacter -k 20 -o acinetobacter.db -s 3956907
ERROR: LoadError: LoadError: LoadError: TaskFailedException
Stacktrace:
[1] sync_end(c::Channel{Any})
@ Base ./task.jl:369
[2] macro expansion
@ ./task.jl:388 [inlined]
[3] remotecall_eval(m::Module, procs::Vector{Int64}, ex::Expr)
@ Distributed /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/macros.jl:223
[4] top-level scope
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Distributed/src/macros.jl:207
[5] include(fname::String)
@ Base.MainInclude ./client.jl:444
[6] top-level scope
@ ~/Desktop/MentaLiST-master/src/build_db_functions.jl:8
[7] include(fname::String)
@ Base.MainInclude ./client.jl:444
[8] top-level scope
@ ~/Desktop/MentaLiST-master/src/mentalist:357
in expression starting at /home/mor/Desktop/MentaLiST-master/src/db_graph.jl:12
in expression starting at /home/mor/Desktop/MentaLiST-master/src/build_db_functions.jl:8
in expression starting at /home/mor/Desktop/MentaLiST-master/src/mentalist:323
any help will be appreciated
The text was updated successfully, but these errors were encountered: