diff --git a/docs/2-acknowledgements.html b/docs/2-acknowledgements.html index b9f45d4..9fce185 100644 --- a/docs/2-acknowledgements.html +++ b/docs/2-acknowledgements.html @@ -24,7 +24,7 @@ - + @@ -33,15 +33,15 @@ - - - - - - - - - + + + + + + + + + @@ -51,10 +51,10 @@ - - - - + + + + + # Aspects of good quality code .pull-left[ @@ -335,10 +353,6 @@ ``` ## Error in py_call_impl(callable, dots$args, dots$keywords): IndexError: Index higher than vector length. -## -## Detailed traceback: -## File "<string>", line 1, in <module> -## File "<string>", line 3, in read_vector_value ``` -- #### Why not simply adjust the function output? @@ -389,7 +403,8 @@ ``` ``` -## Warning in read_vector_value(index = 6): Index higher than vector length. +## Warning in read_vector_value(index = 6): Index higher than +## vector length. ``` ``` @@ -424,10 +439,6 @@ ``` ## Error in py_call_impl(callable, dots$args, dots$keywords): IndexError: Index higher than vector length. -## -## Detailed traceback: -## File "<string>", line 2, in <module> -## File "<string>", line 3, in read_vector_value ``` ] @@ -564,7 +575,7 @@ ``` ``` -## <unittest.main.TestProgram object at 0x7f9cf5b06710> +## <unittest.main.TestProgram object at 0x0000018EF1D00A30> ## ## .. ## ---------------------------------------------------------------------- @@ -594,7 +605,7 @@ ``` -## <unittest.main.TestProgram object at 0x7f9cf5af14a8> +## <unittest.main.TestProgram object at 0x0000018EF1C8FA60> ## ## ..F ## ====================================================================== @@ -605,7 +616,7 @@ ## AssertionError: 10 != 11 ## ## ---------------------------------------------------------------------- -## Ran 3 tests in 0.001s +## Ran 3 tests in 0.000s ## ## FAILED (failures=1) ``` diff --git a/docs/slides/slides_documentation.html b/docs/slides/slides_documentation.html index d181407..90758b3 100644 --- a/docs/slides/slides_documentation.html +++ b/docs/slides/slides_documentation.html @@ -8,6 +8,11 @@ + + + + + @@ -21,6 +26,18 @@ + + + + + # Project documentation #### Why do you need documentation? diff --git a/docs/slides/slides_introduction.html b/docs/slides/slides_introduction.html index e950e30..38d0de8 100644 --- a/docs/slides/slides_introduction.html +++ b/docs/slides/slides_introduction.html @@ -4,9 +4,15 @@ Welcome! + + + + + + @@ -20,6 +26,17 @@ + + + + # Thanks! - To you for being here! diff --git a/docs/slides/slides_project-setup.html b/docs/slides/slides_project-setup.html index 1deb6f5..94f0d71 100644 --- a/docs/slides/slides_project-setup.html +++ b/docs/slides/slides_project-setup.html @@ -4,9 +4,15 @@ Setting up a project + + + + + + @@ -20,6 +26,18 @@ + + + + + # Research compendium > A research compendium is a collection of *all digital parts of a research project* including data, code, texts (...). The collection is created in such a way that reproducing all results is straightforward. diff --git a/docs/slides/slides_reproducibility.html b/docs/slides/slides_reproducibility.html index 6a81684..85c2657 100644 --- a/docs/slides/slides_reproducibility.html +++ b/docs/slides/slides_reproducibility.html @@ -8,6 +8,11 @@ + + + + + @@ -21,6 +26,18 @@ + + + + + # Let's think about the future... -- @@ -41,7 +58,7 @@ - Only do this following exercise if you are OK with your code staying online! - You will not be able to do this with a private repository. -Zenodo and Github have a pipeline that makes your life easier! (_Check the full how-to [on GitHub](https://guides.github.com/activities/citable-code/)._) +Zenodo and Github have a pipeline that makes your life easier! (_Check the full how-to [on GitHub](https://docs.github.com/en/repositories/archiving-a-github-repository/referencing-and-citing-content#issuing-a-persistent-identifier-for-your-repository-with-zenodo)._) #### Your turn: - Go to: [sandbox.zenodo.org](https://sandbox.zenodo.org/), and log in with GitHub. (If you do not have GitHub, simply sign up for a zenodo account; some of the coming steps you will need to do manually...) @@ -52,12 +69,13 @@ # Select your repository -![toggle](https://guides.github.com/activities/citable-code/zenodo-toggle-on.png) +![toggle](https://web.archive.org/web/20211021121037if_/https://guides.github.com/activities/citable-code/zenodo-toggle-on.png) + --- # Release your project! -![release](https://guides.github.com/activities/citable-code/repo-view.png) +![release](https://web.archive.org/web/20211026201828if_/https://guides.github.com/activities/citable-code/repo-view.png) ... and follow the workflow! @@ -80,7 +98,7 @@ Your code is now uploading to Zenodo: you can check it under the 'upload' tab: -![citable-upload](https://guides.github.com/activities/citable-code/upload-tab.png) +![citable-upload](https://web.archive.org/web/20211026201828if_/https://guides.github.com/activities/citable-code/upload-tab.png) --- # Getting your DOI @@ -88,7 +106,7 @@ - Click 'publish' - Voilá! -![zenodo-upload](https://guides.github.com/activities/citable-code/zenodo-form.png) +![zenodo-upload](https://web.archive.org/web/20211026201828if_/https://guides.github.com/activities/citable-code/zenodo-form.png) --- # Getting your DOI @@ -110,13 +128,15 @@ #### Let's exchange projects! -Please go to [tinyurl.com/repco-share](https://docs.google.com/spreadsheets/d/1FlQnSj8ipbUNhZgr_nS1PHnaapL8SvamWcfPjKTaBhA/edit#gid=0), and fill out: +Please go to the second tab in the status chart [tinyurl.com/repcochart](https://docs.google.com/spreadsheets/d/1J3SfR2C0cghVjUPGCjk9UXZzipB3c7HL5Z1iicK8adc/edit#gid=600881461), and fill out: - your project name - your project (github) URL - your name - the language in which the project was written in the yellow columns. + +NB this information will be deleted right after the course -- #### Now, write your name in one of the blue columns behind a project you will reproduce.