From f53d5345f4d553ef79cfc2116f24f186e778194a Mon Sep 17 00:00:00 2001
From: Justin Bousquin <bousquin.justin@epa.gov>
Date: Wed, 17 Jan 2024 16:34:39 -0600
Subject: [PATCH] Update test_r.yaml

try using shell to run as R
---
 .github/workflows/test_r.yaml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/test_r.yaml b/.github/workflows/test_r.yaml
index 5c0c61e..e022a38 100644
--- a/.github/workflows/test_r.yaml
+++ b/.github/workflows/test_r.yaml
@@ -58,10 +58,11 @@ jobs:
           python -m pip install --no-deps .
           pip install -r requirements.txt
       
-      - name: point R to pip env
+      - name: Run pip env using R reticulate
         run: |
           install.packages("reticulate")
           import("harmonize_wq")
+          shell: Rscript {0}
         
       - name: Run pytest
         run: pytest -v harmonize_wq