Plan for Milestone 3

[monazhu]

Goal: further modularize the project by pulling out functions/code from the main analysis document into .R files. Each member of the group will work on the same function as they did last week.

• Michelle: contour plot
• Rory: pearson's correlation test
• Wenyu: t-test
• Mona: data cleaning

(Note: We will still need to modularize our t-test visualization code to make this work - we will figure out later who will take on this task based on availability)

We will also be making a bash file that clarifies the input/output of each step process. We will first start by putting placeholders in the bash file first before finalizing each components

[monazhu]

Just making a note of additional things we need to do:

• Update 03-analysis-plot.Rmd to remove code chunks (maybe rename folder to report?)
• Update references to bibtext format in new file called references.bib (put inside report folder)
• Update docker/renv files (docopt)

Is there anything else I'm missing?

[wenyunie]

@monazhu Thanks for the summary, Mona, I think it is pretty much it. Just to highlight, I see in the requirements, we should also use bookdown to reference the figures and tables, which also means bookdown will be an additional dependency.