From dbcf52b38130e397d6162046144f0f9da63e73da Mon Sep 17 00:00:00 2001
From: wenyunie <143786716+wenyunie@users.noreply.github.com>
Date: Sun, 3 Dec 2023 11:06:16 -0800
Subject: [PATCH 1/2] clarifying knitting v.s. running cells

---
 README.md | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 0b0c74e..d1e70c7 100644
--- a/README.md
+++ b/README.md
@@ -53,7 +53,9 @@ If the user insists on using their own local terminal, then the user would need
 **Note2:** VERY IMPORTANT!!!!: If the user plans to use the containerized solution later, please remember to deactivate the .Rproj fist. Otherwise the activated .Rproj environment will be detected inside the container because of the .Rprofile file! This would overlay the self-contained container environment!!!
 
 
-To run the code for the analysis, open `analysis/analysis_report.Rmd` through Rstudio and under "Run" on the top right hand side, select "Run All". 
+To separately run the code for the analysis, open `analysis/analysis-plot.Rmd` through Rstudio and under "Run" on the top right hand side, select "Run All". 
+
+To separately render the final report, open `analysis/analysis_report.Rmd` through Rstudio and click "Knit". (please do not try to run code cells of this parent RMD file, it is meant provide structure only.)
 
 Users who find it difficult to manually reproduce the environment for running the analysis and rendering the report can follow the guide in the `Running Analyses via Containers` section.
 

From 5188e8cbcf5a85c591fe8f5a3f82375464a68c39 Mon Sep 17 00:00:00 2001
From: wenyunie <143786716+wenyunie@users.noreply.github.com>
Date: Sun, 3 Dec 2023 11:15:52 -0800
Subject: [PATCH 2/2] Update README.md typo

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index d1e70c7..ca06f1b 100644
--- a/README.md
+++ b/README.md
@@ -55,7 +55,7 @@ If the user insists on using their own local terminal, then the user would need
 
 To separately run the code for the analysis, open `analysis/analysis-plot.Rmd` through Rstudio and under "Run" on the top right hand side, select "Run All". 
 
-To separately render the final report, open `analysis/analysis_report.Rmd` through Rstudio and click "Knit". (please do not try to run code cells of this parent RMD file, it is meant provide structure only.)
+To separately render the final report, open `analysis/analysis_report.Rmd` through Rstudio and click "Knit". (please do not try to run code cells of this parent RMD file, it is meant to provide structure only.)
 
 Users who find it difficult to manually reproduce the environment for running the analysis and rendering the report can follow the guide in the `Running Analyses via Containers` section.