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A good solution to this would be to check for any read-only cells in the source/release notebook, and overwrite the student's copy with the instructors copy
Basically I think in the cleaning step we can just check whether nb["cell_type"] == nb["metadata"]["nbgrader"]["cell_type"] and if not, replace the main cell_type with the nbgrader cell_type
I will fix that in prefect-by-assignment but will leave this open for rudaux-1.0-dev
Students often accidentally change the type of read-only cells (e.g. from markdown to raw). This causes nbgrader to break.
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