diff --git a/docs/quick_tour.md b/docs/quick_tour.md index dd20f7e..8c21f24 100644 --- a/docs/quick_tour.md +++ b/docs/quick_tour.md @@ -23,7 +23,7 @@ Here we use the `mESC` data from the BEELINE benchmark. The `mESC` data comes fr If you want to see the inference on a larger network with 14,000+ genes and 8,000+ cells, check out the other example. -``` +```python bl_dt, bl_gt = rd.data.load_beeline( benchmark_data='mESC', benchmark_setting='1000_STRING' ) @@ -31,11 +31,16 @@ bl_dt, bl_gt = rd.data.load_beeline( Here, `load_beeline` gives you a tuple, where the first element is an anndata of the single cell experession data and the second element is an array of all the ground truth links (based on the STRING network in this case). -``` +```md +```python bl_dt ``` + +```{code-output} AnnData object with n_obs × n_vars = 421 × 1620 obs: 'cell_type', 'cell_type_index' +``` +``` ## GRN Inference