Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add support for CURIE/URI normalization #372

Open
gaurav opened this issue Dec 2, 2024 · 1 comment
Open

Add support for CURIE/URI normalization #372

gaurav opened this issue Dec 2, 2024 · 1 comment

Comments

@gaurav
Copy link
Collaborator

gaurav commented Dec 2, 2024

@matentzn asked for:

add support for curie/uri normalisation with the curies package (https://github.com/biopragmatics/curies) and in particular extended prefixmap support (https://curies.readthedocs.io/en/stable/tutorial.html#loading-extended-prefix-maps). This allows people with different prefix preferences for curies to use the service seamlessly

This would be great to include -- in our case, we would default to using the prefix map from the Biolink model to expand CURIEs to URLs, and then potentially support a second prefix map that could turn them back into CURIEs for another system if needed. We would probably start with putting this into the KGX export, and then we could add it to additional outputs as needed.

@matentzn
Copy link

matentzn commented Dec 2, 2024

Awesome!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants