DESCRIPTION

Package: indelfindr
Title: Indel Detection from Human Genomic Sequence Data
Version: 1.0.0
Authors@R: 
    person("George", "Tollefson", email = "george_tollefson@brown.edu", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7924-7844"))
Description: The indelfindr package contains functions which power INDELfindR, our tool for calling complex and simple insertion and deletions in aligned human genomic sequence data.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Imports: argparse (>= 2.1.3), 
         plyr (>= 1.8.6), 
         tidyverse (>= 1.3.1),
         stringr (>= 1.4.0),
         inline (>= 0.3.19), 
         bettermc (>= 1.1.2),
         purrr (>= 0.3.4),
         dplyr (>= 1.0.8),
         GenomicFeatures (>= 1.46.1),
         BSgenome.Hsapiens.UCSC.hg38 (== 1.4.4),
	 BSgenome.Hsapiens.UCSC.hg19 (== 1.4.3),
         bamsignals (>= 1.26.0),
         GenomicAlignments (>= 1.30.0),
         IRanges (>= 2.28.0),
         Rsamtools (>= 2.10.0),    
         S4Vectors (>= 0.32.3),
         GenomicRanges (>= 1.46.1),
         GenomeInfoDb (>= 1.30.1)  
Suggests: 
    knitr,
    rmarkdown
VignetteBuilder: knitr