From cacb357f79c76162ccad63d3f55d7e71a6380d45 Mon Sep 17 00:00:00 2001 From: mstubb Date: Wed, 21 Oct 2015 13:11:39 +0100 Subject: [PATCH] Added readme text to emphasise need to unzip base transcriptomes --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index dfeb729..2747bf2 100644 --- a/README.md +++ b/README.md @@ -102,7 +102,7 @@ Type of sequence to be analysed. Since TraCeR currently only works with TCR sequ [kallisto_options] base_transcriptome = /path/to/kallisto/transcriptome -Location of the transcriptome fasta file to which the specific TCR sequences will be appended from each cell. Can be downloaded from http://bio.math.berkeley.edu/kallisto/transcriptomes/ and many other places. +Location of the transcriptome fasta file to which the specific TCR sequences will be appended from each cell. Can be downloaded from http://bio.math.berkeley.edu/kallisto/transcriptomes/ and many other places. This must be a plain-text fasta file so decompress it if necessary (files from the Kallisto link are gzipped). ##Using TraCeR## Tracer has two modes *assemble* and *summarise*.