From 19c8f33e1317a14a056cfad5999cf6be4b364bc6 Mon Sep 17 00:00:00 2001 From: mstubb Date: Mon, 4 Jan 2016 10:42:22 +0000 Subject: [PATCH] More filename fixes to commit --- resources/igblast_dbs/human/imgt_tcr_db_d.fa | 12 + .../igblast_dbs/human/imgt_tcr_db_d.fa.nhr | Bin 0 -> 282 bytes .../igblast_dbs/human/imgt_tcr_db_d.fa.nin | Bin 0 -> 156 bytes .../igblast_dbs/human/imgt_tcr_db_d.fa.nog | Bin 0 -> 56 bytes .../igblast_dbs/human/imgt_tcr_db_d.fa.nsd | 12 + .../igblast_dbs/human/imgt_tcr_db_d.fa.nsi | Bin 0 -> 67 bytes .../igblast_dbs/human/imgt_tcr_db_d.fa.nsq | Bin 0 -> 25 bytes resources/igblast_dbs/human/imgt_tcr_db_j.fa | 224 +++ .../igblast_dbs/human/imgt_tcr_db_j.fa.nhr | Bin 0 -> 4512 bytes .../igblast_dbs/human/imgt_tcr_db_j.fa.nin | Bin 0 -> 1212 bytes .../igblast_dbs/human/imgt_tcr_db_j.fa.nog | Bin 0 -> 408 bytes .../igblast_dbs/human/imgt_tcr_db_j.fa.nsd | 188 ++ .../igblast_dbs/human/imgt_tcr_db_j.fa.nsi | Bin 0 -> 113 bytes .../igblast_dbs/human/imgt_tcr_db_j.fa.nsq | Bin 0 -> 1426 bytes resources/igblast_dbs/human/imgt_tcr_db_v.fa | 1603 +++++++++++++++++ .../igblast_dbs/human/imgt_tcr_db_v.fa.nhr | Bin 0 -> 13208 bytes .../igblast_dbs/human/imgt_tcr_db_v.fa.nin | Bin 0 -> 3312 bytes .../igblast_dbs/human/imgt_tcr_db_v.fa.nog | Bin 0 -> 1108 bytes .../igblast_dbs/human/imgt_tcr_db_v.fa.nsd | 538 ++++++ .../igblast_dbs/human/imgt_tcr_db_v.fa.nsi | Bin 0 -> 266 bytes .../igblast_dbs/human/imgt_tcr_db_v.fa.nsq | Bin 0 -> 18962 bytes 21 files changed, 2577 insertions(+) create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_d.fa create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_d.fa.nhr create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_d.fa.nin create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_d.fa.nog create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_d.fa.nsd create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_d.fa.nsi create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_d.fa.nsq create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_j.fa create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_j.fa.nhr create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_j.fa.nin create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_j.fa.nog create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_j.fa.nsd create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_j.fa.nsi create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_j.fa.nsq create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_v.fa create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_v.fa.nhr create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_v.fa.nin create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_v.fa.nog create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_v.fa.nsd create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_v.fa.nsi create mode 100644 resources/igblast_dbs/human/imgt_tcr_db_v.fa.nsq diff --git a/resources/igblast_dbs/human/imgt_tcr_db_d.fa b/resources/igblast_dbs/human/imgt_tcr_db_d.fa new file mode 100644 index 0000000..19b9f83 --- /dev/null +++ b/resources/igblast_dbs/human/imgt_tcr_db_d.fa @@ -0,0 +1,12 @@ +>TRBD1*01 +gggacagggggc +>TRBD2*01 +gggactagcggggggg +>TRBD2*02 +gggactagcgggaggg +>TRDD1*01 +gaaatagt +>TRDD2*01 +ccttcctac +>TRDD3*01 +actgggggatacg diff --git a/resources/igblast_dbs/human/imgt_tcr_db_d.fa.nhr b/resources/igblast_dbs/human/imgt_tcr_db_d.fa.nhr new file mode 100644 index 0000000000000000000000000000000000000000..e95920660bb06e830ebd3242ee26813dd52ae840 GIT binary patch literal 282 zcmXqLFlboNAjQDIun^2z*dWCb66EA!sAXUX6a<4s4NQzsrU4G+MkFgYf||%c&~z8l Q9OL3bl4D$4jIp~N0D9#+F8}}l literal 0 HcmV?d00001 diff --git a/resources/igblast_dbs/human/imgt_tcr_db_d.fa.nin b/resources/igblast_dbs/human/imgt_tcr_db_d.fa.nin new file mode 100644 index 0000000000000000000000000000000000000000..ec17bd7fdfe91b5a7f956d45a5665de0795b4047 GIT binary patch literal 156 zcmZQzU|?Z@0D;Wh^pg0JFiHVwMj&PdVlE)&2Vx;076oESAjTyw2>?a>4!i&W literal 0 HcmV?d00001 diff --git a/resources/igblast_dbs/human/imgt_tcr_db_d.fa.nog b/resources/igblast_dbs/human/imgt_tcr_db_d.fa.nog new file mode 100644 index 0000000000000000000000000000000000000000..32e2cca10b00367456495e05b333e4dc1f77372d GIT binary patch literal 56 XcmZQzU|?i`02Uy{24%yk|2O~uEczGp literal 0 HcmV?d00001 diff --git a/resources/igblast_dbs/human/imgt_tcr_db_d.fa.nsd b/resources/igblast_dbs/human/imgt_tcr_db_d.fa.nsd new file mode 100644 index 0000000..775e351 --- /dev/null +++ b/resources/igblast_dbs/human/imgt_tcr_db_d.fa.nsd @@ -0,0 +1,12 @@ +lcl|trbd1*010 +lcl|trbd2*011 +lcl|trbd2*022 +lcl|trdd1*013 +lcl|trdd2*014 +lcl|trdd3*015 +trbd1*010 +trbd2*011 +trbd2*022 +trdd1*013 +trdd2*014 +trdd3*015 diff --git a/resources/igblast_dbs/human/imgt_tcr_db_d.fa.nsi b/resources/igblast_dbs/human/imgt_tcr_db_d.fa.nsi new file mode 100644 index 0000000000000000000000000000000000000000..990ad5a31018a19acc960b4b4a650453860479f0 GIT binary patch literal 67 zcmZQzU|?imU|<5`IY7(<#2~%{1A_pNLIEIo6CifZNzSP$DN0H))G{z+GGG7zb)*Ji literal 0 HcmV?d00001 diff --git a/resources/igblast_dbs/human/imgt_tcr_db_d.fa.nsq b/resources/igblast_dbs/human/imgt_tcr_db_d.fa.nsq new file mode 100644 index 0000000000000000000000000000000000000000..3c2624cebd6d627a4782405554c208412fcdd5ea GIT binary patch literal 25 ecmZQr;kA-sMN!r&5TV7;aGD`L#!+sSVIu%~NeMXs literal 0 HcmV?d00001 diff --git a/resources/igblast_dbs/human/imgt_tcr_db_j.fa b/resources/igblast_dbs/human/imgt_tcr_db_j.fa new file mode 100644 index 0000000..21463fb --- /dev/null +++ b/resources/igblast_dbs/human/imgt_tcr_db_j.fa @@ -0,0 +1,224 @@ +>TRAJ1*01 +gtatgaaagtattacctcccagttgcaatttggcaaaggaaccagagtttccacttctcc +cc +>TRAJ10*01 +atactcacgggaggaggaaacaaactcacctttgggacaggcactcagctaaaagtggaa +ctca +>TRAJ11*01 +tgaattcaggatacagcaccctcacctttgggaaggggactatgcttctagtctctccag +>TRAJ12*01 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