diff --git a/README.md b/README.md index 985e87e..b6ec514 100644 --- a/README.md +++ b/README.md @@ -14,6 +14,9 @@ As an output, a networkx graph of the gene regulatory network with integrated sc ## System requirements +
+show requirements + ### Hardware requirements `snp2cell` can run on a standard computer with enough RAM to hold the used datasets in memory. @@ -34,6 +37,8 @@ A python version `>=3.5` and `<3.12` is required for all dependencies to work. Various python libraries are used, listed in `setup.py`, including the python scientific stack, `networkx` and `scanpy`. `snp2cell` and all dependencies can be installed via `pip` (see below). +
+ ## Installation *Optional: create and activate a new conda environment (with python<3.12):* @@ -42,12 +47,6 @@ mamba create -n snp2cell "python<3.12" mamba activate snp2cell ``` -### Install with pip - -**from PyPI** - -*will be added* - **from github** ```bash @@ -86,4 +85,4 @@ snp2cell --install-completion bash ## Citation -*to be added* +`iss_patcher` is part of the forthcoming manuscript *"A multiomic atlas of human early skeletal development"* by To, Fei, Pett et al. Stay tuned for details!