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Hello! I have a conceptual question regarding the meaning of the p-values generated by CellphoneDB.
I understood from the protocols paper by Efremova et al. (2020) that the p-value indicates the likelihood of the interaction being specific to a given cluster / cell-type. Therefore, I would expect that low p-values would only be present between a few clusters for a given gene interaction. However, in my dot plot of CellphoneDB results, I obtain results such as these:
where interactions such as CD74_MIF and EGFR_AREG have low p-values across several combinations of clusters.
How is this possible? Please let me know what you think.
The text was updated successfully, but these errors were encountered:
bhavyaac
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Conceptual question about p-value
P-values high across clusters? [conceptual question]
Sep 20, 2021
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Hello! I have a conceptual question regarding the meaning of the p-values generated by CellphoneDB.
I understood from the protocols paper by Efremova et al. (2020) that the p-value indicates the likelihood of the interaction being specific to a given cluster / cell-type. Therefore, I would expect that low p-values would only be present between a few clusters for a given gene interaction. However, in my dot plot of CellphoneDB results, I obtain results such as these:
where interactions such as CD74_MIF and EGFR_AREG have low p-values across several combinations of clusters.
How is this possible? Please let me know what you think.
The text was updated successfully, but these errors were encountered: