From da7a47c655483ad25573055d3152cc733422ff15 Mon Sep 17 00:00:00 2001 From: Jon Date: Tue, 23 Apr 2024 00:23:52 +0000 Subject: [PATCH 1/6] Initial changes for submission through hermes support --- README.md | 57 +++++- tom_tns/forms.py | 276 ++++++++++++++++++++++++++--- tom_tns/templatetags/tns_extras.py | 63 +++++-- tom_tns/tns_api.py | 27 +++ tom_tns/urls.py | 1 + 5 files changed, 386 insertions(+), 38 deletions(-) diff --git a/README.md b/README.md index 65ee692..de229fd 100644 --- a/README.md +++ b/README.md @@ -17,12 +17,15 @@ TOMtoolkit module for reporting transients to the TNS ] ``` -3. Add your TNS credentials to your `settings.py` if they don't already exist for the TNS Broker. +3. Add TNS or Hermes account credentials to your `settings.py` to enable different methods of sharing. If you don't have access to a TNS Bot for your TOM, you can make one from the [TNS website](https://www.wis-tns.org/bots). + + NOTE: If you are testing on the sandbox, the sandbox is only synced every Sunday, so new bots created using the above link won't show up until after the next update. + + ### Submit to TNS directly (no hermes) + Add your TNS credentials to your `settings.py` if they don't already exist for the TNS Broker. - NOTE: If you are testing on the sandbox, the sandbox is only synced every Sunday, so new bots created using the above link -won't show up until after the next update. ```python BROKERS = { @@ -33,11 +36,44 @@ won't show up until after the next update. 'api_key': os.getenv('TNS_API_KEY', ''), # This is the API key for the associated BOT 'tns_base_url': 'https://sandbox.wis-tns.org/api', # This is the sandbox URL. Use https://www.wis-tns.org/api for live submission. 'group_names': ['bot_group', 'PI_group'], # Optional List. Include if you wish to use any affiliated Group Names when reporting. + 'filter_mapping': { + 'o': 'Other', + 'c': 'Clear', + ... + }, # Optional mapping from your reduced datum filter values to TNS filter options. + 'default_authors': 'Foo Bar ' # Optional default authors string to populate the author fields for tns submission. If not specified, defaults to saying " using ". }, } ``` -5. Include the tom_tns URLconf in your project `urls.py`: + ### Submit to TNS through Hermes + If you want to submit to the TNS through [HERMES](https://hermes.lco.global), then you must first configure your [hermes account profile](https://hermes.lco.global/profile) to have your TNS credentials associated with your account. Then you must add your hermes credentials you `settings.py` in the `DATA_SHARING` section. This method of TNS submission will take precedence if `ENABLE_TNS` is set to True in your hermes `DATA_SHARING` details. + + NOTE: If you don't set TNS credentials in your hermes account profile, TNS submission will still work but use the default Hermes_Bot account for TNS submission. + + + ```python + DATA_SHARING = { + ... + 'hermes': { + 'DISPLAY_NAME': 'hermes', + 'BASE_URL': 'https://hermes-dev.lco.global/', + 'HERMES_API_KEY': 'YourHermesAPITokenHere', + 'DEFAULT_AUTHORS': 'String of default author list for your submissions heres', # Optional default authors string to populate the author fields for tns submission. If not specified, defaults to saying " using ". + 'USER_TOPICS': ['hermes.discovery', 'hermes.classification', ...] # This is a list of hermes topics you will be allowed to share on. hermes.discovery and hermes.classification are automatically used for TNS submissions of those types. + 'TNS_GROUP_NAMES': ['bot_group', 'PI_group'], # Optional List. Include if you wish to use any affiliated Group Names when reporting to TNS. + 'FILTER_MAPPING': { + 'o': 'Other', + 'c': 'Clear', + ... + }, # Optional mapping from your reduced datum filter values to TNS filter options. + 'ENABLE_TNS': False # Set to True to enable TNS submissions through Hermes + }, + } + ``` + + +4. Include the tom_tns URLconf in your project `urls.py`: ```python urlpatterns = [ ... @@ -45,6 +81,17 @@ won't show up until after the next update. ] ``` -Once configured, a `TNS` button should appear below the Target Name. +Once configured, a `TNS` button should appear below the Target Name on the default Target Detail page. + +If you have customized the Target Details page of your TOM, or if you would like to add entrypoints to the tom_tns form from other TOM pages, including those referencing a specific data product or reduced datum's values, then you can do that by including the code below somewhere in your templates: + +```html + Submit to TNS +``` + +The datum_pk is optional. If it is not specified, the latest photometry reduced datum will be used to pre-fill the discovery report form, and the latest spectroscopy reduced datum will be used to pre-fill the classification report form. If you specifiy a datum pk, then that datum and associated data product will be used to pre-fill the proper forms. + +For example, if you want to add a link next to each data product to submit it to TNS, then you could just use the dataproducts first datum id for the `datum_pk`. + NOTE: Users who are using `tomtoolkit<2.15.12` will have to add the TNS button manually. diff --git a/tom_tns/forms.py b/tom_tns/forms.py index 132c5b1..ca12a63 100644 --- a/tom_tns/forms.py +++ b/tom_tns/forms.py @@ -2,16 +2,33 @@ from django import forms from django.conf import settings +from django.core.exceptions import ValidationError -from tom_tns.tns_api import get_tns_values, get_tns_credentials, get_reverse_tns_values, pre_upload_files_to_tns +from tom_tns.tns_api import (get_tns_values, get_tns_credentials, get_reverse_tns_values, + pre_upload_files_to_tns, submit_through_hermes) +from tom_dataproducts.models import DataProduct from crispy_forms.helper import FormHelper from crispy_forms.layout import Layout, Row, Column, Submit, HTML -from crispy_forms.bootstrap import AppendedText +from crispy_forms.bootstrap import AppendedText, Alert, Accordion, AccordionGroup from datetime import datetime -class TNSReportForm(forms.Form): +HERMES_FLUX_UNITS = [ + ("AB mag", "AB mag"), ("Vega mag", "Vega mag"), + ("mJy", "mJy"), ("erg / s / cm² / Å", "erg / s / cm² / Å") +] + +class BaseReportForm(forms.Form): + def is_set(self, field): + if field in self.cleaned_data and self.cleaned_data[field]: + return True + return False + + +class TNSReportForm(BaseReportForm): + submitter = forms.CharField(required=True, widget=forms.HiddenInput()) + object_name = forms.CharField(required=True, widget=forms.HiddenInput()) ra = forms.FloatField(label='R.A.') dec = forms.FloatField(label='Dec.') reporting_group = forms.ChoiceField(choices=[]) @@ -19,8 +36,15 @@ class TNSReportForm(forms.Form): reporter = forms.CharField(widget=forms.Textarea(attrs={'rows': 1}), label='Reporter Name(s) / Author List') discovery_date = forms.DateTimeField(initial=datetime.utcnow()) at_type = forms.ChoiceField(choices=[], label='AT type') - archive = forms.ChoiceField(choices=[]) - archival_remarks = forms.CharField() + archive = forms.ChoiceField(required=False, choices=[]) + archival_remarks = forms.CharField(required=False) + nondetection_observation_date = forms.DateTimeField(required=False, label='Observation date') + nondetection_flux = forms.FloatField(required=False, label='Flux') + nondetection_flux_units = forms.ChoiceField(choices=[], required=False, label='Flux units') + nondetection_filter = forms.ChoiceField(choices=[], required=False, label='Filter') + nondetection_instrument = forms.ChoiceField(choices=[], required=False, label='Instrument') + nondetection_observer = forms.CharField(required=False, label='Observer') + nondetection_exposure_time = forms.FloatField(required=False, label='Exposure time') observation_date = forms.DateTimeField() flux = forms.FloatField() flux_error = forms.FloatField() @@ -44,13 +68,25 @@ def __init__(self, *args, **kwargs): self.fields['at_type'].choices = get_tns_values('at_types') self.fields['at_type'].initial = (1, "PSN") self.fields['filter'].choices = get_tns_values('filters') - self.fields['filter'].initial = (22, "r-Sloan") + self.fields['filter'].initial = ("22", "r-Sloan") + self.fields['nondetection_filter'].choices = get_tns_values('filters') + self.fields['nondetection_filter'].initial = ("22", "r-Sloan") self.fields['archive'].choices = get_tns_values('archives') - self.fields['archive'].initial = (0, "Other") + self.fields['archive'].initial = ("0", "Other") self.fields['instrument'].choices = get_tns_values('instruments') - self.fields['instrument'].initial = (0, "Other") - self.fields['flux_units'].choices = get_tns_values('units') - self.fields['flux_units'].initial = (1, "ABMag") + self.fields['instrument'].initial = ("0", "Other") + self.fields['nondetection_instrument'].choices = get_tns_values('instruments') + self.fields['nondetection_instrument'].initial = ("0", "Other") + if submit_through_hermes(): + self.fields['flux_units'].choices = HERMES_FLUX_UNITS + self.fields['flux_units'].initial = ("AB mag", "AB mag") + self.fields['nondetection_flux_units'].choices = HERMES_FLUX_UNITS + self.fields['nondetection_flux_units'].initial = ("AB mag", "AB mag") + else: + self.fields['flux_units'].choices = get_tns_values('units') + self.fields['flux_units'].initial = (1, "ABMag") + self.fields['nondetection_flux_units'].choices = get_tns_values('units') + self.fields['nondetection_flux_units'].initial = (1, "ABMag") # set choices of reporting groups to list set in settings.py bot_tns_group_names = get_tns_credentials().get('group_names', []) @@ -69,6 +105,7 @@ def __init__(self, *args, **kwargs): self.helper = FormHelper() self.helper.layout = Layout( + 'submitter', 'object_name', Row( Column('reporter', css_class='col-md-6'), Column('reporting_group'), @@ -96,14 +133,115 @@ def __init__(self, *args, **kwargs): ), Row(Column('photometry_remarks')), Row(HTML('

Last Nondetection

')), - Row( - Column('archive'), - Column('archival_remarks'), - Column('nondetection_remarks', css_class='col-md-6'), + Alert( + content="""Fill out either the Archive information, or the Detection information for the last nondetection + """, + css_class='alert-warning' + ), + Accordion( + AccordionGroup('Archive information', + Row( + Column('archive'), + Column('archival_remarks'), + ), + ), + AccordionGroup('Detection information', + Row( + Column('nondetection_observation_date'), + Column('nondetection_instrument'), + Column('nondetection_exposure_time'), + Column('nondetection_observer'), + ), + Row( + Column('nondetection_flux'), + Column('nondetection_flux_units'), + Column('nondetection_filter'), + ), + Row(Column('nondetection_remarks', css_class='col-md-12')) + ) ), Row(Column(Submit('submit', 'Submit Report'))), ) + def clean(self): + super().clean() + # Either the archival info or nondetection flux info must be set for a valid TNS submission + if not self.is_set('archiveid') or not self.is_set('archival_remarks'): + if any([not self.is_set(field) for field in [ + 'nondetection_flux', 'nondetection_instrument', 'nondetection_filter', 'nondetection_observation_date' + ]]): + raise ValidationError("Must set either last nondetection archival information, or last nondetection flux, obsdate, filter and instrument") + + def generate_hermes_report(self): + """ + Generate Hermes TNS discovery report according to the hermes schema + + Returns the report as a Dict to be sent as JSON + """ + hermes_report = { + 'topic': 'hermes.discovery', + 'title': f'{self.cleaned_data["object_name"]} TNS discovery report', + 'submit_to_tns': True, + 'submitter': self.cleaned_data['submitter'], + 'authors': self.cleaned_data['reporter'], # TODO: Set the initial authors on the field from the settings + 'data': { + 'targets': [{ + 'name': self.cleaned_data['object_name'], + 'ra': self.cleaned_data['ra'], + 'dec': self.cleaned_data['dec'], + 'new_discovery': True, + 'discovery_info': { + 'date': self.cleaned_data['discovery_date'].isoformat(), + 'discovery_source': dict(self.fields['discovery_data_source'].choices)[self.cleaned_data['discovery_data_source']], + 'reporting_group': dict(self.fields['reporting_group'].choices)[self.cleaned_data['reporting_group']], + 'transient_type': dict(self.fields['at_type'].choices)[int(self.cleaned_data['at_type'])], + } + }], + 'photometry': [{ + 'target_name': self.cleaned_data['object_name'], + 'date_obs': self.cleaned_data['observation_date'].isoformat(), + 'instrument': dict(self.fields['instrument'].choices)[self.cleaned_data['instrument']], + 'bandpass': dict(self.fields['filter'].choices)[self.cleaned_data['filter']], + "brightness": self.cleaned_data['flux'], + "brightness_error": self.cleaned_data['flux_error'], + "brightness_unit": self.cleaned_data['flux_units'], + }] + }, + } + if self.is_set('discovery_remarks'): + hermes_report['data']['targets'][0]['comments'] = self.cleaned_data['discovery_remarks'] + if self.is_set('photometry_remarks'): + hermes_report['data']['photometry'][0]['comments'] = self.cleaned_data['photometry_remarks'] + if self.is_set('exposure_time'): + hermes_report['data']['photometry'][0]['exposure_time'] = self.cleaned_data['exposure_time'] + if self.is_set('observer'): + hermes_report['data']['photometry'][0]['observer'] = self.cleaned_data['observer'] + if self.is_set('limiting_flux'): + hermes_report['data']['photometry'][0]['limiting_brightness'] = self.cleaned_data['limiting_flux'] + + if self.is_set('archiveid') and self.is_set('archival_remarks'): + hermes_report['data']['targets'][0]['discovery_info']['nondetection_source'] = dict(self.fields['archiveid'].choices)[self.cleaned_data['archiveid']] + hermes_report['data']['targets'][0]['discovery_info']['nondetection_comments'] = self.cleaned_data['archival_remarks'] + elif all([self.is_set(field) for field in [ + 'nondetection_flux', 'nondetection_instrument', 'nondetection_filter', 'nondetection_observation_date' + ]]): + nondetection = { + 'limiting_brightness': self.cleaned_data['nondetection_flux'], + 'limiting_brightness_unit': self.cleaned_data['nondetection_flux_units'], + 'date_obs': self.cleaned_data['nondetection_observation_date'], + 'bandpass': self.cleaned_data['nondetection_filter'], + 'instrument': self.cleaned_data['nondetection_instrument'], + } + if self.is_set('nondetection_exposure_time'): + nondetection['exposure_time'] = self.cleaned_data['nondetection_exposure_time'] + if self.is_set('nondetection_observer'): + nondetection['observer'] = self.cleaned_data['nondetection_observer'] + if self.is_set('nondetection_remarks'): + nondetection['comments'] = self.cleaned_data['nondetection_remarks'] + hermes_report['data']['photometry'].append(nondetection) + + return hermes_report, [] + def generate_tns_report(self): """ Generate TNS bulk transient report according to the schema in this manual: @@ -153,11 +291,14 @@ def generate_tns_report(self): return report_data -class TNSClassifyForm(forms.Form): - object_name = forms.CharField() +class TNSClassifyForm(BaseReportForm): + submitter = forms.CharField(required=False, widget=forms.HiddenInput()) + object_name = forms.CharField(required=False) + ra = forms.FloatField(required=False, widget=forms.HiddenInput()) + dec = forms.FloatField(required=False, widget=forms.HiddenInput()) classifier = forms.CharField(widget=forms.Textarea(attrs={'rows': 1}), label='Classifier Name(s) / Author List') classification = forms.ChoiceField(choices=[]) - redshift = forms.FloatField(required=False) + redshift = forms.FloatField(required=False, widget=forms.TextInput()) reporting_group = forms.ChoiceField(choices=[]) classification_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 2})) observation_date = forms.DateTimeField() @@ -166,8 +307,12 @@ class TNSClassifyForm(forms.Form): observer = forms.CharField() reducer = forms.CharField(required=False) spectrum_type = forms.ChoiceField(choices=[]) - ascii_file = forms.FileField(label='ASCII file', required=True, widget=forms.ClearableFileInput()) - fits_file = forms.FileField(label='FITS file', required=False, widget=forms.ClearableFileInput()) + ascii_file = forms.ChoiceField(label='ASCII file', choices=[], required=True) + fits_file = forms.ChoiceField(label='FITS file', choices=[], required=False) + ascii_file_description = forms.CharField(label='ASCII file description', required=False) + fits_file_description = forms.CharField(label='FITS file description', required=False) + ascii_file_override = forms.FileField(label='ASCII file override', required=False, widget=forms.FileInput()) + fits_file_override = forms.FileField(label='FITS file override', required=False, widget=forms.FileInput()) spectrum_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 2})) def __init__(self, *args, **kwargs): @@ -181,6 +326,8 @@ def __init__(self, *args, **kwargs): self.fields['classification'].choices = get_tns_values('object_types') self.fields['classification'].initial = (1, "SN") self.fields['spectrum_type'].choices = get_tns_values('spectra_types') + self.fields['ascii_file'].choices = kwargs['initial']['ascii_file_choices'] + self.fields['fits_file'].choices = kwargs['initial']['fits_file_choices'] # set choices of reporting groups to list set in settings.py bot_tns_group_names = get_tns_credentials().get('group_names', []) @@ -195,6 +342,7 @@ def __init__(self, *args, **kwargs): self.helper = FormHelper() self.helper.layout = Layout( + 'submitter', 'ra', 'dec', Row( Column('classifier', css_class='col-md-8'), Column('reporting_group'), @@ -220,10 +368,86 @@ def __init__(self, *args, **kwargs): Column('ascii_file'), Column('fits_file'), ), + Row( + Column('ascii_file_override'), + Column('fits_file_override'), + ), + Row( + Column('ascii_file_description'), + Column('fits_file_description'), + ), Row(Column('spectrum_remarks')), Row(Column(Submit('submit', 'Submit Classification'))), ) + def generate_hermes_report(self): + """ + Generate Hermes TNS classification report according to the hermes schema + + Returns the report as a Dict to be sent as JSON + """ + if self.is_set('ascii_file_override'): + ascii_file = self.cleaned_data['ascii_file_override'] + else: + ascii_file = DataProduct.objects.get(pk=self.cleaned_data['ascii_file']).data + if self.is_set('fits_file_override'): + fits_file = self.cleaned_data['fits_file_override'] + elif self.is_set('fits_file'): + fits_file = DataProduct.objects.get(pk=self.cleaned_data['fits_file']).data + else: + fits_file = None + hermes_report = { + 'topic': 'hermes.classification', + 'title': f'{self.cleaned_data["object_name"]} TNS classification report', + 'submit_to_tns': True, + 'submitter': self.cleaned_data['submitter'], + 'authors': self.cleaned_data['classifier'], # TODO: Set the initial authors on the field from the settings + 'data': { + 'targets': [{ + 'name': self.cleaned_data['object_name'], + 'ra': self.cleaned_data['ra'], + 'dec': self.cleaned_data['dec'], + 'new_discovery': False, + 'discovery_info': { + 'reporting_group': dict(self.fields['reporting_group'].choices)[self.cleaned_data['reporting_group']] + } + }], + 'spectroscopy': [{ + 'target_name': self.cleaned_data['object_name'], + 'date_obs': self.cleaned_data['observation_date'].isoformat(), + 'instrument': dict(self.fields['instrument'].choices)[self.cleaned_data['instrument']], + 'spec_type': dict(self.fields['spectrum_type'].choices)[self.cleaned_data['spectrum_type']], + 'classification': dict(self.fields['classification'].choices)[self.cleaned_data['classification']], + 'observer': self.cleaned_data['observer'], + 'file_info': [ + { + 'name': ascii_file.name, + 'description': self.cleaned_data.get('ascii_file_description', '') + } + ] + }] + }, + } + files = [ascii_file] + if self.is_set('redshift'): + hermes_report['data']['targets'][0]['redshift'] = self.cleaned_data['redshift'] + if self.is_set('classification_remarks'): + hermes_report['data']['targets'][0]['comments'] = self.cleaned_data['classification_remarks'] + if self.is_set('reducer'): + hermes_report['data']['spectroscopy'][0]['reducer'] = self.cleaned_data['reducer'] + if self.is_set('exposure_time'): + hermes_report['data']['spectroscopy'][0]['exposure_time'] = self.cleaned_data['exposure_time'] + if fits_file: + hermes_report['data']['spectroscopy'][0]['file_info'].append({ + 'name': fits_file.name, + 'description': self.cleaned_data.get('fits_file_description', '') + }) + files.append(fits_file) + if self.is_set('spectrum_remarks'): + hermes_report['data']['spectroscopy'][0]['comments'] = self.cleaned_data['spectrum_remarks'] + + return hermes_report, files + def generate_tns_report(self): """ Generate TNS bulk classification report according to the schema in this manual: @@ -231,8 +455,18 @@ def generate_tns_report(self): Returns the report as a JSON-formatted string """ - file_list = {'ascii_file': self.cleaned_data['ascii_file'], - 'fits_file': self.cleaned_data['fits_file'], + if self.is_set('ascii_file_override'): + ascii_file = self.cleaned_data['ascii_file_override'] + else: + ascii_file = DataProduct.objects.get(pk=self.cleaned_data['ascii_file']).data + if self.is_set('fits_file_override'): + fits_file = self.cleaned_data['fits_file_override'] + elif self.is_set('fits_file'): + fits_file = DataProduct.objects.get(pk=self.cleaned_data['fits_file']).data + else: + fits_file = None + file_list = {'ascii_file': ascii_file, + 'fits_file': fits_file, 'other_files': []} try: tns_filenames = pre_upload_files_to_tns(file_list) diff --git a/tom_tns/templatetags/tns_extras.py b/tom_tns/templatetags/tns_extras.py index 9802739..6f60238 100644 --- a/tom_tns/templatetags/tns_extras.py +++ b/tom_tns/templatetags/tns_extras.py @@ -1,7 +1,7 @@ from django import template from django.conf import settings -from tom_tns.tns_api import get_tns_values +from tom_tns.tns_api import get_tns_values, map_filter_to_tns, default_authors from tom_tns.forms import TNSReportForm, TNSClassifyForm register = template.Library() @@ -21,21 +21,34 @@ def report_to_tns(context): """ target = context['target'] initial = { + 'object_name': target.name, 'ra': target.ra, 'dec': target.dec, + 'submitter': context['request'].user.email, 'reporter': f"{getattr(context['request'].user, 'get_full_name()', 'Anonymous User')}," f" using {settings.TOM_NAME}", } - # Get photometry if available - photometry = target.reduceddatum_set.filter(data_type='photometry') - if photometry.exists(): - reduced_datum = photometry.latest() + + reporter = default_authors() + if reporter: + initial['reporter'] = reporter + + reduced_datum = None + if 'datum' in context: + reduced_datum = context['datum'] + else: + # Get photometry if available + photometry = target.reduceddatum_set.filter(data_type='photometry') + if photometry.exists(): + reduced_datum = photometry.latest() + if reduced_datum: initial['observation_date'] = reduced_datum.timestamp initial['flux'] = reduced_datum.value.get('magnitude') initial['flux_error'] = reduced_datum.value.get('error') filter_name = reduced_datum.value.get('filter') - if filter_name in TNS_FILTER_IDS: - initial['filter'] = (TNS_FILTER_IDS[filter_name], filter_name) + mapped_filter = map_filter_to_tns(filter_name) + if mapped_filter in TNS_FILTER_IDS: + initial['filter'] = (TNS_FILTER_IDS[mapped_filter], mapped_filter) instrument_name = reduced_datum.value.get('instrument') if instrument_name in TNS_INSTRUMENT_IDS: initial['instrument'] = (TNS_INSTRUMENT_IDS[instrument_name], instrument_name) @@ -53,18 +66,44 @@ def classify_with_tns(context): target = context['target'] initial = { 'object_name': target.name.replace('AT', '').replace('SN', ''), + 'ra': target.ra, + 'dec': target.dec, + 'submitter': context['request'].user.email, 'classifier': f"{getattr(context['request'].user, 'get_full_name()', 'Anonymous User')}," f" using {settings.TOM_NAME}", } - # Get spectroscopy if available - spectra = target.reduceddatum_set.filter(data_type='spectroscopy') - if spectra.exists(): - reduced_datum = spectra.latest() + + classifier = default_authors() + if classifier: + initial['classifier'] = classifier + + # Get the list of chocies for ascii and fits files for those fields + ascii_files = [] + fits_files = [(None, '')] + for data_product in target.dataproduct_set.all(): + if data_product.get_file_extension().lower() in ['.ascii', '.txt']: + ascii_files.append((data_product.pk, data_product.get_file_name())) + elif data_product.get_file_extension().lower() in ['.fits', '.fits.fz']: + fits_files.append((data_product.pk, data_product.get_file_name())) + initial['ascii_file_choices'] = ascii_files + initial['fits_file_choices'] = fits_files + + # Get the spectra details from the latest spectra reduced datum or one passed in + reduced_datum = None + if 'datum' in context: + reduced_datum = context['datum'] + else: + spectra = target.reduceddatum_set.filter(data_type='spectroscopy') + if spectra.exists(): + reduced_datum = spectra.latest() + if reduced_datum: initial['observation_date'] = reduced_datum.timestamp - initial['ascii_file'] = reduced_datum.data_product.data + if reduced_datum.data_product.get_file_extension().lower() in ['.ascii', '.txt']: + initial['ascii_file'] = (reduced_datum.data_product.pk, reduced_datum.data_product.get_file_name()) instrument_name = reduced_datum.value.get('instrument') if instrument_name in TNS_INSTRUMENT_IDS: initial['instrument'] = (TNS_INSTRUMENT_IDS[instrument_name], instrument_name) + tns_classify_form = TNSClassifyForm(initial=initial) return {'target': target, 'form': tns_classify_form} diff --git a/tom_tns/tns_api.py b/tom_tns/tns_api.py index a7e9daf..bf73a9a 100644 --- a/tom_tns/tns_api.py +++ b/tom_tns/tns_api.py @@ -16,6 +16,33 @@ class BadTnsRequest(Exception): pass +def submit_through_hermes(): + """ Check if hermes credentials exist and are setup so TNS messages should be sent through hermes + Returns True if it should go through hermes, False if it should go directly to TNS + """ + if hasattr(settings, 'DATA_SHARING') and settings.DATA_SHARING.get('hermes', {}).get('ENABLE_TNS', False): + return True + return False + + +def map_filter_to_tns(filter): + """ Checks if a filter mapping was set in the settings, and if so returns the mapped value for the filter passed in + """ + if submit_through_hermes(): + return settings.DATA_SHARING.get('hermes', {}).get('FILTER_MAPPING', {}).get(filter) + else: + return settings.BROKERS.get('TNS', {}).get('filter_mapping', {}).get(filter) + + +def default_authors(): + """ Returns default authors if set in the settings, otherwise empty string. + """ + if submit_through_hermes(): + return settings.DATA_SHARING.get('hermes', {}).get('DEFAULT_AUTHORS', '') + else: + return settings.BROKERS.get('TNS', {}).get('default_authors', '') + + def get_tns_credentials(): """ Get the TNS credentials from settings.py. diff --git a/tom_tns/urls.py b/tom_tns/urls.py index b8936aa..b2c016d 100644 --- a/tom_tns/urls.py +++ b/tom_tns/urls.py @@ -7,6 +7,7 @@ urlpatterns = [ path('/', TNSFormView.as_view(), name='report-tns'), + path('/', TNSFormView.as_view(), name='report-tns'), path('/report', TNSSubmitView.as_view(form_class=TNSReportForm), name='submit-report'), path('/classify', TNSSubmitView.as_view(form_class=TNSClassifyForm), name='submit-classify'), ] From 882e591f56d9cc2d02c55048ddf11ef2bc2d1aaa Mon Sep 17 00:00:00 2001 From: Jon Date: Tue, 23 Apr 2024 00:32:52 +0000 Subject: [PATCH 2/6] Fix some formatting issues --- tom_tns/forms.py | 38 ++++++++++++++++++++++++-------------- 1 file changed, 24 insertions(+), 14 deletions(-) diff --git a/tom_tns/forms.py b/tom_tns/forms.py index ca12a63..b78ca3c 100644 --- a/tom_tns/forms.py +++ b/tom_tns/forms.py @@ -19,6 +19,7 @@ ("mJy", "mJy"), ("erg / s / cm² / Å", "erg / s / cm² / Å") ] + class BaseReportForm(forms.Form): def is_set(self, field): if field in self.cleaned_data and self.cleaned_data[field]: @@ -134,7 +135,8 @@ def __init__(self, *args, **kwargs): Row(Column('photometry_remarks')), Row(HTML('

Last Nondetection

')), Alert( - content="""Fill out either the Archive information, or the Detection information for the last nondetection + content="""Fill out either the Archive information, + or the Detection information for the last nondetection """, css_class='alert-warning' ), @@ -146,18 +148,18 @@ def __init__(self, *args, **kwargs): ), ), AccordionGroup('Detection information', - Row( + Row( Column('nondetection_observation_date'), Column('nondetection_instrument'), Column('nondetection_exposure_time'), Column('nondetection_observer'), - ), - Row( + ), + Row( Column('nondetection_flux'), Column('nondetection_flux_units'), Column('nondetection_filter'), - ), - Row(Column('nondetection_remarks', css_class='col-md-12')) + ), + Row(Column('nondetection_remarks', css_class='col-md-12')) ) ), Row(Column(Submit('submit', 'Submit Report'))), @@ -170,7 +172,10 @@ def clean(self): if any([not self.is_set(field) for field in [ 'nondetection_flux', 'nondetection_instrument', 'nondetection_filter', 'nondetection_observation_date' ]]): - raise ValidationError("Must set either last nondetection archival information, or last nondetection flux, obsdate, filter and instrument") + raise ValidationError( + "Must set either last nondetection archival information," + "or last nondetection flux, obsdate, filter and instrument" + ) def generate_hermes_report(self): """ @@ -192,8 +197,10 @@ def generate_hermes_report(self): 'new_discovery': True, 'discovery_info': { 'date': self.cleaned_data['discovery_date'].isoformat(), - 'discovery_source': dict(self.fields['discovery_data_source'].choices)[self.cleaned_data['discovery_data_source']], - 'reporting_group': dict(self.fields['reporting_group'].choices)[self.cleaned_data['reporting_group']], + 'discovery_source': dict( + self.fields['discovery_data_source'].choices)[self.cleaned_data['discovery_data_source']], + 'reporting_group': dict( + self.fields['reporting_group'].choices)[self.cleaned_data['reporting_group']], 'transient_type': dict(self.fields['at_type'].choices)[int(self.cleaned_data['at_type'])], } }], @@ -220,11 +227,13 @@ def generate_hermes_report(self): hermes_report['data']['photometry'][0]['limiting_brightness'] = self.cleaned_data['limiting_flux'] if self.is_set('archiveid') and self.is_set('archival_remarks'): - hermes_report['data']['targets'][0]['discovery_info']['nondetection_source'] = dict(self.fields['archiveid'].choices)[self.cleaned_data['archiveid']] - hermes_report['data']['targets'][0]['discovery_info']['nondetection_comments'] = self.cleaned_data['archival_remarks'] + discovery_info = hermes_report['data']['targets'][0]['discovery_info'] + discovery_info['nondetection_source'] = dict( + self.fields['archiveid'].choices)[self.cleaned_data['archiveid']] + discovery_info['nondetection_comments'] = self.cleaned_data['archival_remarks'] elif all([self.is_set(field) for field in [ - 'nondetection_flux', 'nondetection_instrument', 'nondetection_filter', 'nondetection_observation_date' - ]]): + 'nondetection_flux', 'nondetection_instrument', 'nondetection_filter', 'nondetection_observation_date' + ]]): nondetection = { 'limiting_brightness': self.cleaned_data['nondetection_flux'], 'limiting_brightness_unit': self.cleaned_data['nondetection_flux_units'], @@ -409,7 +418,8 @@ def generate_hermes_report(self): 'dec': self.cleaned_data['dec'], 'new_discovery': False, 'discovery_info': { - 'reporting_group': dict(self.fields['reporting_group'].choices)[self.cleaned_data['reporting_group']] + 'reporting_group': dict( + self.fields['reporting_group'].choices)[self.cleaned_data['reporting_group']] } }], 'spectroscopy': [{ From 4a333d277631b6b8b34adff375a22bdd337667b2 Mon Sep 17 00:00:00 2001 From: Jon Date: Thu, 25 Apr 2024 05:32:38 +0000 Subject: [PATCH 3/6] Some final changes and testing --- tom_tns/forms.py | 15 ++++++----- tom_tns/hermes_api.py | 56 +++++++++++++++++++++++++++++++++++++++ tom_tns/views.py | 61 ++++++++++++++++++++++++++++++++----------- 3 files changed, 110 insertions(+), 22 deletions(-) create mode 100644 tom_tns/hermes_api.py diff --git a/tom_tns/forms.py b/tom_tns/forms.py index b78ca3c..628881c 100644 --- a/tom_tns/forms.py +++ b/tom_tns/forms.py @@ -1,4 +1,5 @@ import requests +import os from django import forms from django.conf import settings @@ -168,7 +169,7 @@ def __init__(self, *args, **kwargs): def clean(self): super().clean() # Either the archival info or nondetection flux info must be set for a valid TNS submission - if not self.is_set('archiveid') or not self.is_set('archival_remarks'): + if not self.is_set('archive') or not self.is_set('archival_remarks'): if any([not self.is_set(field) for field in [ 'nondetection_flux', 'nondetection_instrument', 'nondetection_filter', 'nondetection_observation_date' ]]): @@ -184,7 +185,7 @@ def generate_hermes_report(self): Returns the report as a Dict to be sent as JSON """ hermes_report = { - 'topic': 'hermes.discovery', + 'topic': 'hermes.test', 'title': f'{self.cleaned_data["object_name"]} TNS discovery report', 'submit_to_tns': True, 'submitter': self.cleaned_data['submitter'], @@ -226,10 +227,10 @@ def generate_hermes_report(self): if self.is_set('limiting_flux'): hermes_report['data']['photometry'][0]['limiting_brightness'] = self.cleaned_data['limiting_flux'] - if self.is_set('archiveid') and self.is_set('archival_remarks'): + if self.is_set('archive') and self.is_set('archival_remarks'): discovery_info = hermes_report['data']['targets'][0]['discovery_info'] discovery_info['nondetection_source'] = dict( - self.fields['archiveid'].choices)[self.cleaned_data['archiveid']] + self.fields['archive'].choices)[self.cleaned_data['archive']] discovery_info['nondetection_comments'] = self.cleaned_data['archival_remarks'] elif all([self.is_set(field) for field in [ 'nondetection_flux', 'nondetection_instrument', 'nondetection_filter', 'nondetection_observation_date' @@ -406,7 +407,7 @@ def generate_hermes_report(self): else: fits_file = None hermes_report = { - 'topic': 'hermes.classification', + 'topic': 'hermes.test', 'title': f'{self.cleaned_data["object_name"]} TNS classification report', 'submit_to_tns': True, 'submitter': self.cleaned_data['submitter'], @@ -431,7 +432,7 @@ def generate_hermes_report(self): 'observer': self.cleaned_data['observer'], 'file_info': [ { - 'name': ascii_file.name, + 'name': os.path.basename(ascii_file.name), 'description': self.cleaned_data.get('ascii_file_description', '') } ] @@ -449,7 +450,7 @@ def generate_hermes_report(self): hermes_report['data']['spectroscopy'][0]['exposure_time'] = self.cleaned_data['exposure_time'] if fits_file: hermes_report['data']['spectroscopy'][0]['file_info'].append({ - 'name': fits_file.name, + 'name': os.path.basename(fits_file.name), 'description': self.cleaned_data.get('fits_file_description', '') }) files.append(fits_file) diff --git a/tom_tns/hermes_api.py b/tom_tns/hermes_api.py new file mode 100644 index 0000000..b62772f --- /dev/null +++ b/tom_tns/hermes_api.py @@ -0,0 +1,56 @@ +from django.conf import settings +from django.contrib import messages +from urllib.parse import urljoin + +import requests +import json +import logging +import os + +logger = logging.getLogger(__name__) + + +def get_object_from_response(response_json): + # If the submission is successful, then pull out the tns_object name from the references and return it + references = response_json.get('data', {}).get('references', []) + for reference in references: + if reference.get('source') == 'tns_object': + return reference.get('citation') + return None + + +def submit_to_hermes(hermes_message, files, request): + hermes_submit_url = urljoin(settings.DATA_SHARING.get('hermes', {}).get('BASE_URL', ''), 'api/v0/submit_message/') + headers = {'Authorization': f"Token {settings.DATA_SHARING.get('hermes', {}).get('HERMES_API_KEY', '')}"} + response_json = {} + try: + if not files: + # Can submit simple json payload to hermes, and this assumed to be a new discovery + response = requests.post(url=hermes_submit_url, json=hermes_message, headers=headers) + response_json = response.json() + response.raise_for_status() + logger.info(f"Sent TNS discovery message through Hermes with uuid {response_json.get('uuid')}") + return get_object_from_response(response_json) + else: + # There are files, so this must be a classification submission + data = {'data': json.dumps(hermes_message)} + files_to_submit = [] + for file in files: + content_type = 'text/plain' + if file.name.endswith('fits') or file.name.endswith('fits.fz'): + content_type = 'application/fits' + files_to_submit.append(('files', (os.path.basename(file.name), file.open('rb'), content_type))) + response = requests.post(url=hermes_submit_url, data=data, files=files_to_submit, headers=headers) + response_json = response.json() + response.raise_for_status() + logger.info(f"Sent TNS classification message through Hermes with uuid {response_json.get('uuid')}") + return get_object_from_response(response_json) + except Exception as e: + error_msg = 'Failed to Submit message to Hermes/TNS' + if response_json: + error_msg += f': {response_json}' + else: + error_msg += f': {repr(e)}' + logger.error(error_msg) + messages.error(request, error_msg) + return None \ No newline at end of file diff --git a/tom_tns/views.py b/tom_tns/views.py index 7bc891c..8f8eb14 100644 --- a/tom_tns/views.py +++ b/tom_tns/views.py @@ -8,8 +8,11 @@ from guardian.mixins import PermissionListMixin from tom_tns import __version__ -from tom_tns.tns_api import send_tns_report, get_tns_report_reply, get_tns_credentials, BadTnsRequest +from tom_tns.tns_api import (send_tns_report, get_tns_report_reply, get_tns_credentials, + submit_through_hermes, BadTnsRequest) +from tom_tns.hermes_api import submit_to_hermes from tom_targets.models import Target, TargetName +from tom_dataproducts.models import ReducedDatum import json @@ -23,14 +26,21 @@ class TNSFormView(PermissionListMixin, TemplateView): def get_context_data(self, **kwargs): context = super().get_context_data(**kwargs) + context['default_form'] = 'report' target = Target.objects.get(pk=self.kwargs['pk']) + if 'datum_pk' in self.kwargs: + try: + context['datum'] = ReducedDatum.objects.get(pk=self.kwargs['datum_pk']) + if context['datum'].data_type == 'spectroscopy': + context['default_form'] = 'classify' + except ReducedDatum.DoesNotExist: + pass context['tns_configured'] = bool(get_tns_credentials()) context['target'] = target context['version'] = __version__ # from tom_tns.__init__.py # We want to establish a default tab to display. # by default, we start on report, but change to classify if the target name starts with AT. # If the target has an SN name, we warn the user that the target has likely been classified already. - context['default_form'] = 'report' for name in target.names: if name.upper().startswith('AT'): context['default_form'] = 'classify' @@ -44,6 +54,20 @@ class TNSSubmitView(FormView): """ This View is used to submit the TNS report forms. """ + def get_initial(self): + # Must override get_initial to pass in the file choice options or it will fail validation + initial = super().get_initial() + target = Target.objects.get(pk=self.kwargs['pk']) + ascii_files = [] + fits_files = [(None, '')] + for data_product in target.dataproduct_set.all(): + if data_product.get_file_extension().lower() in ['.ascii', '.txt']: + ascii_files.append((data_product.pk, data_product.get_file_name())) + elif data_product.get_file_extension().lower() in ['.fits', '.fits.fz']: + fits_files.append((data_product.pk, data_product.get_file_name())) + initial['ascii_file_choices'] = ascii_files + initial['fits_file_choices'] = fits_files + return initial def get_success_url(self): return reverse_lazy('targets:detail', kwargs=self.kwargs) @@ -58,21 +82,28 @@ def form_valid(self, form): If the Form is successfully constructed, we generate the TNS report and submit it to the TNS. """ try: - # Build TNS Report - tns_report = form.generate_tns_report() - # Submit TNS Report - report_id = send_tns_report(json.dumps(tns_report)) - # Get IAU name from Report Reply - iau_name = get_tns_report_reply(report_id, self.request) - if iau_name is not None: + iau_name = None + if submit_through_hermes(): + hermes_report, files = form.generate_hermes_report() + iau_name = submit_to_hermes(hermes_report, files, self.request) + else: + # Build TNS Report + tns_report = form.generate_tns_report() + # Submit TNS Report + report_id = send_tns_report(json.dumps(tns_report)) + # Get IAU name from Report Reply + iau_name = get_tns_report_reply(report_id, self.request) + + if iau_name: # update the target name in Tom DB target = Target.objects.get(pk=self.kwargs['pk']) - old_name = target.name - target.name = iau_name - target.save() - # Save old name as alias - new_alias = TargetName(name=old_name, target=target) - new_alias.save() + if target.name != iau_name: + old_name = target.name + target.name = iau_name + target.save() + # Save old name as alias + new_alias = TargetName(name=old_name, target=target) + new_alias.save() except (requests.exceptions.HTTPError, BadTnsRequest) as e: messages.error(self.request, f'TNS returned an error: {e}') return HttpResponseRedirect(self.get_success_url()) From 7af384167a8fb3dc232e96d23a3b23ef5ce7ee70 Mon Sep 17 00:00:00 2001 From: Jon Date: Thu, 25 Apr 2024 05:42:35 +0000 Subject: [PATCH 4/6] fix whitespace --- tom_tns/hermes_api.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tom_tns/hermes_api.py b/tom_tns/hermes_api.py index b62772f..3604b22 100644 --- a/tom_tns/hermes_api.py +++ b/tom_tns/hermes_api.py @@ -53,4 +53,4 @@ def submit_to_hermes(hermes_message, files, request): error_msg += f': {repr(e)}' logger.error(error_msg) messages.error(request, error_msg) - return None \ No newline at end of file + return None From 60fbe225ed0288633c2eeae7caed9de6f0ac0901 Mon Sep 17 00:00:00 2001 From: Jon Date: Mon, 13 May 2024 20:46:47 +0000 Subject: [PATCH 5/6] Update readme with comments --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index de229fd..2282792 100644 --- a/README.md +++ b/README.md @@ -41,7 +41,7 @@ TOMtoolkit module for reporting transients to the TNS 'c': 'Clear', ... }, # Optional mapping from your reduced datum filter values to TNS filter options. - 'default_authors': 'Foo Bar ' # Optional default authors string to populate the author fields for tns submission. If not specified, defaults to saying " using ". + 'default_authors': 'Foo Bar , Rando Calrissian, et al.' # Optional default authors string to populate the author fields for tns submission. If not specified, defaults to saying " using ". }, } ``` @@ -59,7 +59,7 @@ TOMtoolkit module for reporting transients to the TNS 'DISPLAY_NAME': 'hermes', 'BASE_URL': 'https://hermes-dev.lco.global/', 'HERMES_API_KEY': 'YourHermesAPITokenHere', - 'DEFAULT_AUTHORS': 'String of default author list for your submissions heres', # Optional default authors string to populate the author fields for tns submission. If not specified, defaults to saying " using ". + 'DEFAULT_AUTHORS': 'Foo Bar , Rando Calrissian, et al.', # Optional default authors string to populate the author fields for tns submission. If not specified, defaults to saying " using ". 'USER_TOPICS': ['hermes.discovery', 'hermes.classification', ...] # This is a list of hermes topics you will be allowed to share on. hermes.discovery and hermes.classification are automatically used for TNS submissions of those types. 'TNS_GROUP_NAMES': ['bot_group', 'PI_group'], # Optional List. Include if you wish to use any affiliated Group Names when reporting to TNS. 'FILTER_MAPPING': { From 7b472c1b93039545e019efdc02b6b82325fb5a09 Mon Sep 17 00:00:00 2001 From: Jon Date: Mon, 13 May 2024 21:50:56 +0000 Subject: [PATCH 6/6] Update poetry lock file --- poetry.lock | 1013 ++++++++++++++++++++++++++++++--------------------- 1 file changed, 591 insertions(+), 422 deletions(-) diff --git a/poetry.lock b/poetry.lock index 7dc7aba..d5ec0ce 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. [[package]] name = "asdf" @@ -20,8 +20,8 @@ importlib-resources = {version = ">=3", markers = "python_version < \"3.9\""} jmespath = ">=0.6.2" jsonschema = ">=4.0.1,<4.18" numpy = [ - {version = ">=1.20,<1.25", markers = "python_version < \"3.9\""}, {version = ">=1.20", markers = "python_version >= \"3.9\""}, + {version = ">=1.20,<1.25", markers = "python_version < \"3.9\""}, ] packaging = ">=19" pyyaml = ">=5.4.1" @@ -113,22 +113,18 @@ test = ["asdf (>=2.8.0)", "asdf-astropy", "pytest", "scipy"] [[package]] name = "asdf-unit-schemas" -version = "0.1.0" -description = "ASDF schemas for units" +version = "0.2.0" +description = "DEPRECATED: ASDF schemas for units" optional = false python-versions = ">=3.8" files = [ - {file = "asdf_unit_schemas-0.1.0-py3-none-any.whl", hash = "sha256:0e104b53c23a9e15541cfa5d101613d2724a9124fc56301324512659afb470d5"}, - {file = "asdf_unit_schemas-0.1.0.tar.gz", hash = "sha256:42b78d67213efe4ffd4529fb0e58d9c7a0dab5cbf8839b230f1bc0a446bff999"}, + {file = 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+python-versions = ">=3.8" files = [ - {file = "asgiref-3.7.2-py3-none-any.whl", hash = "sha256:89b2ef2247e3b562a16eef663bc0e2e703ec6468e2fa8a5cd61cd449786d4f6e"}, - {file = "asgiref-3.7.2.tar.gz", hash = "sha256:9e0ce3aa93a819ba5b45120216b23878cf6e8525eb3848653452b4192b92afed"}, + {file = "asgiref-3.8.1-py3-none-any.whl", hash = "sha256:3e1e3ecc849832fe52ccf2cb6686b7a55f82bb1d6aee72a58826471390335e47"}, + {file = "asgiref-3.8.1.tar.gz", hash = "sha256:c343bd80a0bec947a9860adb4c432ffa7db769836c64238fc34bdc3fec84d590"}, ] [package.dependencies] @@ -170,17 +166,17 @@ tests = ["mypy (>=0.800)", "pytest", "pytest-asyncio"] [[package]] name = "astroplan" -version = "0.9.1" +version = "0.10" description = "Observation planning package for astronomers" optional = false python-versions = ">=3.7" files = [ - {file = "astroplan-0.9.1.tar.gz", hash = "sha256:d98c5ea58f6131de391aa66c78e0b4d77649359b29dbc8fdee9385e0408c2f4b"}, + {file = "astroplan-0.10.tar.gz", hash = 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