From 7b2e6edb600340ba60be34d4098d1179ba9483e3 Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Fri, 3 Nov 2023 14:59:37 -0700 Subject: [PATCH 01/21] initial commit --- README.md | 2 +- manage.py | 22 + poetry.lock | 1658 +++++++++++++++++ pyproject.toml | 17 + tom_tns/__init__.py | 0 tom_tns/__pycache__/__init__.cpython-310.pyc | Bin 0 -> 141 bytes tom_tns/__pycache__/admin.cpython-310.pyc | Bin 0 -> 182 bytes tom_tns/__pycache__/apps.cpython-310.pyc | Bin 0 -> 421 bytes tom_tns/__pycache__/forms.cpython-310.pyc | Bin 0 -> 7945 bytes tom_tns/__pycache__/models.cpython-310.pyc | Bin 0 -> 179 bytes tom_tns/__pycache__/urls.cpython-310.pyc | Bin 0 -> 326 bytes tom_tns/__pycache__/views.cpython-310.pyc | Bin 0 -> 2628 bytes tom_tns/admin.py | 3 + tom_tns/apps.py | 6 + tom_tns/forms.py | 357 ++++ tom_tns/migrations/__init__.py | 0 .../__pycache__/__init__.cpython-310.pyc | Bin 0 -> 152 bytes tom_tns/models.py | 3 + tom_tns/templates/tom_tns/tns_report.html | 14 + tom_tns/tests.py | 3 + tom_tns/urls.py | 9 + tom_tns/views.py | 60 + tom_tns_base/__init__.py | 0 .../__pycache__/__init__.cpython-310.pyc | Bin 0 -> 146 bytes .../__pycache__/settings.cpython-310.pyc | Bin 0 -> 4767 bytes tom_tns_base/__pycache__/urls.cpython-310.pyc | Bin 0 -> 949 bytes tom_tns_base/__pycache__/wsgi.cpython-310.pyc | Bin 0 -> 559 bytes tom_tns_base/asgi.py | 16 + tom_tns_base/settings.py | 274 +++ tom_tns_base/urls.py | 23 + tom_tns_base/wsgi.py | 16 + 31 files changed, 2482 insertions(+), 1 deletion(-) create mode 100755 manage.py create mode 100644 poetry.lock create mode 100644 pyproject.toml create mode 100644 tom_tns/__init__.py create mode 100644 tom_tns/__pycache__/__init__.cpython-310.pyc create mode 100644 tom_tns/__pycache__/admin.cpython-310.pyc create mode 100644 tom_tns/__pycache__/apps.cpython-310.pyc create mode 100644 tom_tns/__pycache__/forms.cpython-310.pyc create mode 100644 tom_tns/__pycache__/models.cpython-310.pyc create mode 100644 tom_tns/__pycache__/urls.cpython-310.pyc create mode 100644 tom_tns/__pycache__/views.cpython-310.pyc create mode 100644 tom_tns/admin.py create mode 100644 tom_tns/apps.py create mode 100644 tom_tns/forms.py create mode 100644 tom_tns/migrations/__init__.py create mode 100644 tom_tns/migrations/__pycache__/__init__.cpython-310.pyc create mode 100644 tom_tns/models.py create mode 100644 tom_tns/templates/tom_tns/tns_report.html create mode 100644 tom_tns/tests.py create mode 100644 tom_tns/urls.py create mode 100644 tom_tns/views.py create mode 100644 tom_tns_base/__init__.py create mode 100644 tom_tns_base/__pycache__/__init__.cpython-310.pyc create mode 100644 tom_tns_base/__pycache__/settings.cpython-310.pyc create mode 100644 tom_tns_base/__pycache__/urls.cpython-310.pyc create mode 100644 tom_tns_base/__pycache__/wsgi.cpython-310.pyc create mode 100644 tom_tns_base/asgi.py create mode 100644 tom_tns_base/settings.py create mode 100644 tom_tns_base/urls.py create mode 100644 tom_tns_base/wsgi.py diff --git a/README.md b/README.md index b8ad17c..c5e9115 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,2 @@ -# tns_report +# tom_tns TOMtoolkit module for reporting transients to the TNS diff --git a/manage.py b/manage.py new file mode 100755 index 0000000..33a49e5 --- /dev/null +++ b/manage.py @@ -0,0 +1,22 @@ +#!/usr/bin/env python +"""Django's command-line utility for administrative tasks.""" +import os +import sys + + +def main(): + """Run administrative tasks.""" + os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'tom_tns_base.settings') + try: + from django.core.management import execute_from_command_line + except ImportError as exc: + raise ImportError( + "Couldn't import Django. Are you sure it's installed and " + "available on your PYTHONPATH environment variable? Did you " + "forget to activate a virtual environment?" + ) from exc + execute_from_command_line(sys.argv) + + +if __name__ == '__main__': + main() diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..f2b9010 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,1658 @@ +# This file is automatically @generated by Poetry and should not be changed by hand. + +[[package]] +name = "asdf" +version = "2.15.0" +description = "Python implementation of the ASDF Standard" +category = "main" +optional = false +python-versions = ">=3.8" +files = [ + {file = "asdf-2.15.0-py3-none-any.whl", hash = "sha256:11fae326d1f3a39a2c0c4cd42d4fcb789ef46f9ebe00c79564f34b066f05027a"}, + {file = "asdf-2.15.0.tar.gz", hash = "sha256:686f1c91ebf987d41f915cfb6aa70940d7ad17f87ede0be70463147ad2314587"}, +] + +[package.dependencies] +asdf-standard = ">=1.0.1" +asdf-transform-schemas = ">=0.3" +asdf-unit-schemas = ">=0.1" +importlib-metadata = ">=4.11.4" +importlib-resources = {version = ">=3", markers = 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b/tom_tns/admin.py new file mode 100644 index 0000000..8c38f3f --- /dev/null +++ b/tom_tns/admin.py @@ -0,0 +1,3 @@ +from django.contrib import admin + +# Register your models here. diff --git a/tom_tns/apps.py b/tom_tns/apps.py new file mode 100644 index 0000000..83bd424 --- /dev/null +++ b/tom_tns/apps.py @@ -0,0 +1,6 @@ +from django.apps import AppConfig + + +class TomTnsConfig(AppConfig): + default_auto_field = 'django.db.models.BigAutoField' + name = 'tom_tns' diff --git a/tom_tns/forms.py b/tom_tns/forms.py new file mode 100644 index 0000000..214e4ea --- /dev/null +++ b/tom_tns/forms.py @@ -0,0 +1,357 @@ +from django import forms +from crispy_forms.helper import FormHelper +from crispy_forms.layout import Layout, Row, Column, Submit, HTML +from crispy_forms.bootstrap import AppendedText +from datetime import datetime +import json +import os + + +TNS_FILTER_CHOICES = [ + (0, "Other"), + (1, "Clear"), + (10, "U-Johnson"), + (11, "B-Johnson"), + (12, "V-Johnson"), + (13, "R-Cousins"), + (14, "I-Cousins"), + (15, "J-Bessel"), + (16, "H-Bessel"), + (17, "K-Bessel"), + (18, "L"), + (19, "M"), + (20, "u-Sloan"), + (21, "g-Sloan"), + (22, "r-Sloan"), + (23, "i-Sloan"), + (24, "z-Sloan"), + (25, "y-P1"), + (26, "w-P1"), +] + +TNS_INSTRUMENT_CHOICES = [ + (0, "Other"), +] + +TNS_CLASSIFICATION_CHOICES = [ + (0, "Other"), + (1, "SN"), + (2, "SN I"), + (3, "SN Ia"), + (4, "SN Ib"), + (5, "SN Ic"), + (6, "SN Ib/c"), + (7, "SN Ic-BL"), + (9, "SN Ibn"), + (10, "SN II"), + (11, "SN IIP"), + (12, "SN IIL"), + (13, "SN IIn"), + (14, "SN IIb"), + (15, "SN I-faint"), + (16, "SN I-rapid"), + (18, "SLSN-I"), + (19, "SLSN-II"), + (20, "SLSN-R"), + (23, "Afterglow"), + (24, "LBV"), + (25, "ILRT"), + (26, "Nova"), + (27, "CV"), + (28, "Varstar"), + (29, "AGN"), + (30, "Galaxy"), + (31, "QSO"), + (40, "Light-Echo"), + (50, "Std-spec"), + (60, "Gap"), + (61, "Gap I"), + (62, "Gap II"), + (65, "LRN"), + (66, "FBOT"), + (70, "Kilonova"), + (99, "Impostor-SN"), + (100, "SN Ia-pec"), + (102, "SN Ia-SC"), + (103, "SN Ia-91bg-like"), + (104, "SN Ia-91T-like"), + (105, "SN Iax[02cx-like]"), + (106, "SN Ia-CSM"), + (107, "SN Ib-pec"), + (108, "SN Ic-pec"), + (109, "SN Icn"), + (110, "SN Ibn/Icn"), + (111, "SN II-pec"), + (112, "SN IIn-pec"), + (115, "SN Ib-Ca-rich"), + (116, "SN Ib/c-Ca-rich"), + (117, "SN Ic-Ca-rich"), + (118, "SN Ia-Ca-rich"), + (120, "TDE"), + (121, "TDE-H"), + (122, "TDE-He"), + (123, "TDE-H-He"), + (200, "WR"), + (201, "WR-WN"), + (202, "WR-RC"), + (203, "WR-WO"), + (210, "M dwarf"), +] + + +class TNSReportForm(forms.Form): + ra = forms.FloatField(label='R.A.') + dec = forms.FloatField(label='Dec.') + reporting_group = forms.ChoiceField(choices=[ + (66, "SAGUARO"), + ], initial=(66, "SAGUARO")) + discovery_data_source = forms.ChoiceField(choices=[ + (66, "SAGUARO"), + ], initial=(66, "SAGUARO")) + reporter = forms.CharField(widget=forms.Textarea(attrs={'rows': 1})) + discovery_date = forms.DateTimeField(initial=datetime.utcnow()) + at_type = forms.ChoiceField(choices=[ + (0, "Other"), + (1, "PSN"), + (2, "PNV"), + (3, "AGN"), + (4, "NUC"), + (5, "FRB"), + ], initial=(1, "PSN"), label='AT type') + archive = forms.ChoiceField(choices=[ + (0, "Other"), + (1, "SDSS"), + (2, "DSS"), + ], initial=(0, "Other")) + archival_remarks = forms.CharField(initial="CSS") + observation_date = forms.DateTimeField() + flux = forms.FloatField() + flux_error = forms.FloatField() + flux_units = forms.ChoiceField(choices=[ + (0, "Other"), + (1, "ABMag"), + (2, "STMag"), + (3, "VegaMag"), + (4, "erg cm(-2) sec(-1)"), + (5, "erg cm(-2) sec(-1) Hz(-1)"), + (6, "erg cm(-2) sec(-1) Ang(-1)"), + (7, "counts sec(-1)"), + (8, "Jy"), + (9, "mJy"), + (10, "Neutrino events"), + (33, "Photons sec(-1) cm(-2)"), + ], initial=(1, "ABMag")) + filter = forms.ChoiceField(choices=TNS_FILTER_CHOICES, initial=(22, "r-Sloan")) + instrument = forms.ChoiceField(choices=TNS_INSTRUMENT_CHOICES, initial=(0, "Other")) + limiting_flux = forms.FloatField(required=False) + exposure_time = forms.FloatField(required=False) + observer = forms.CharField(required=False) + discovery_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 1})) + photometry_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 1})) + nondetection_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 1})) + + def __init__(self, *args, **kwargs): + super().__init__(*args, **kwargs) + self.helper = FormHelper() + self.helper.layout = Layout( + Row( + Column('reporter', css_class='col-md-6'), + Column('reporting_group'), + Column('discovery_data_source'), + ), + Row( + Column(AppendedText('ra', 'deg')), + Column(AppendedText('dec', 'deg')), + Column('discovery_date'), + Column('at_type'), + ), + Row(Column('discovery_remarks')), + Row(HTML('

Discovery Photometry

')), + Row( + Column('observation_date'), + Column('instrument'), + Column('limiting_flux'), + Column('observer'), + ), + Row( + Column('flux'), + Column('flux_error'), + Column('flux_units'), + Column('filter'), + ), + Row(Column('photometry_remarks')), + Row(HTML('

Last Nondetection

')), + Row( + Column('archive'), + Column('archival_remarks'), + Column('nondetection_remarks', css_class='col-md-6'), + ), + Row(Column(Submit('submit', 'Submit Report'))), + ) + + def generate_tns_report(self): + """ + Generate TNS bulk transient report according to the schema in this manual: + https://sandbox.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf + + Returns the report as a JSON-formatted string + """ + report_data = { + "at_report": { + "0": { + "ra": { + "value": self.cleaned_data['ra'], + }, + "dec": { + "value": self.cleaned_data['dec'], + }, + "reporting_group_id": self.cleaned_data['reporting_group'], + "discovery_data_source_id": self.cleaned_data['discovery_data_source'], + "reporter": self.cleaned_data['reporter'], + "discovery_datetime": self.cleaned_data['discovery_date'].strftime('%Y-%m-%d %H:%M:%S'), + "at_type": self.cleaned_data['at_type'], + "non_detection": { + "archiveid": self.cleaned_data['archive'], + "archival_remarks": self.cleaned_data['archival_remarks'], + "comments": self.cleaned_data['nondetection_remarks'], + }, + "photometry": { + "photometry_group": { + "0": { + "obsdate": self.cleaned_data['observation_date'].strftime('%Y-%m-%d %H:%M:%S'), + "flux": self.cleaned_data['flux'], + "flux_error": self.cleaned_data['flux_error'], + "flux_units": self.cleaned_data['flux_units'], + "filter_value": self.cleaned_data['filter'], + "instrument_value": self.cleaned_data['instrument'], + "limiting_flux": self.cleaned_data['limiting_flux'], + "exptime": self.cleaned_data['exposure_time'], + "observer": self.cleaned_data['observer'], + "comments": self.cleaned_data['comments'], + }, + } + }, + } + } + } + return json.dumps(report_data) + + +class TargetClassifyForm(forms.Form): + name = forms.CharField() + classifier = forms.CharField(widget=forms.Textarea(attrs={'rows': 1})) + classification = forms.ChoiceField(choices=TNS_CLASSIFICATION_CHOICES, initial=(1, "SN")) + redshift = forms.FloatField(required=False) + group = forms.ChoiceField(choices=[ + (66, "SAGUARO"), + ], initial=(66, "SAGUARO")) + classification_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 1})) + observation_date = forms.DateTimeField() + instrument = forms.ChoiceField(choices=TNS_INSTRUMENT_CHOICES, initial=(0, "Other")) + exposure_time = forms.FloatField(required=False) + observer = forms.CharField() + reducer = forms.CharField(required=False) + spectrum_type = forms.ChoiceField(choices=[ + (1, 'Object'), + (2, 'Host'), + (3, 'Sky'), + (4, 'Arcs'), + (5, 'Synthetic'), + ]) + ascii_file = forms.FileField(label='ASCII file') + fits_file = forms.FileField(label='FITS file', required=False) + spectrum_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 1})) + + def __init__(self, *args, **kwargs): + super().__init__(*args, **kwargs) + self.helper = FormHelper() + self.helper.layout = Layout( + Row( + Column('classifier', css_class='col-md-8'), + Column('group'), + ), + Row( + Column('name'), + Column('classification'), + Column('redshift'), + ), + Row(Column('classification_remarks')), + Row(HTML('

Classification Spectrum

')), + Row( + Column('observation_date'), + Column('observer'), + Column('reducer'), + ), + Row( + Column('instrument'), + Column('exposure_time'), + Column('spectrum_type'), + ), + Row( + Column('ascii_file'), + Column('fits_file'), + ), + Row(Column('spectrum_remarks')), + Row(Column(Submit('submit', 'Submit Report'))), + ) + + def files_to_upload(self): + files_to_upload = {} + if self.cleaned_data['ascii_file'] is not None: + files_to_upload['files[0]'] = ( + os.path.basename(self.cleaned_data['ascii_file'].name), + self.cleaned_data['ascii_file'].open(), + 'text/plain' + ) + if self.cleaned_data['fits_file'] is not None: + files_to_upload['files[1]'] = ( + os.path.basename(self.cleaned_data['fits_file'].name), + self.cleaned_data['fits_file'].open(), + 'application/fits' + ) + return files_to_upload + + def generate_tns_report(self, new_filenames=None): + """ + Generate TNS bulk classification report according to the schema in this manual: + https://sandbox.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf + + Returns the report as a JSON-formatted string + """ + if new_filenames is None: + ascii_filename = os.path.basename(self.cleaned_data['ascii_file'].name) + else: + ascii_filename = new_filenames[0] + report_data = { + "classification_report": { + "0": { + "name": self.cleaned_data['name'], + "classifier": self.cleaned_data['classifier'], + "objtypeid": self.cleaned_data['classification'], + "redshift": self.cleaned_data['redshift'], + "groupid": self.cleaned_data['group'], + "remarks": self.cleaned_data['classification_remarks'], + "spectra": { + "spectra-group": { + "0": { + "obsdate": self.cleaned_data['observation_date'].strftime('%Y-%m-%d %H:%M:%S'), + "instrumentid": self.cleaned_data['instrument'], + "exptime": self.cleaned_data['exposure_time'], + "observer": self.cleaned_data['observer'], + "reducer": self.cleaned_data['reducer'], + "spectypeid": self.cleaned_data['spectrum_type'], + "ascii_file": ascii_filename, + "remarks": self.cleaned_data['spectrum_remarks'], + }, + } + }, + } + } + } + if self.cleaned_data['fits_file'] is not None: + if new_filenames is None: + fits_filename = os.path.basename(self.cleaned_data['fits_file'].name) + else: + fits_filename = new_filenames[1] + report_data['classification_report']['0']['spectra']['spectra_group']['0']['fits_file'] = fits_filename + return json.dumps(report_data) diff --git a/tom_tns/migrations/__init__.py b/tom_tns/migrations/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tom_tns/migrations/__pycache__/__init__.cpython-310.pyc b/tom_tns/migrations/__pycache__/__init__.cpython-310.pyc new file mode 100644 index 0000000000000000000000000000000000000000..dfec89c6e8e0c2f6655b948c3e1ee3b646ffecab GIT binary patch literal 152 zcmd1j<>g`kf-4n{sUZ3>h(HF6K#l_t7qb9~6oz01O-8?!3`HPe1o6vSKO;XkRX-~^ zBe5hkCowZmKRvTVza&35z9g?0PUmK(7bTWt<^zS|<1_OzOXB183My}L*yQG?l;)(` MfebBX0un3?0GmrAxBvhE literal 0 HcmV?d00001 diff --git a/tom_tns/models.py b/tom_tns/models.py new file mode 100644 index 0000000..71a8362 --- /dev/null +++ b/tom_tns/models.py @@ -0,0 +1,3 @@ +from django.db import models + +# Create your models here. diff --git a/tom_tns/templates/tom_tns/tns_report.html b/tom_tns/templates/tom_tns/tns_report.html new file mode 100644 index 0000000..df42dce --- /dev/null +++ b/tom_tns/templates/tom_tns/tns_report.html @@ -0,0 +1,14 @@ +{% extends 'tom_common/base.html' %} +{% load bootstrap4 crispy_forms_tags %} +{% block title %}Report to TNS{% endblock %} +{% block content %} +

Report {{ target.name }} to the TNS

+
+
+
+ {% csrf_token %} + {% crispy form %} +
+
+
+{% endblock %} \ No newline at end of file diff --git a/tom_tns/tests.py b/tom_tns/tests.py new file mode 100644 index 0000000..7ce503c --- /dev/null +++ b/tom_tns/tests.py @@ -0,0 +1,3 @@ +from django.test import TestCase + +# Create your tests here. diff --git a/tom_tns/urls.py b/tom_tns/urls.py new file mode 100644 index 0000000..7245f34 --- /dev/null +++ b/tom_tns/urls.py @@ -0,0 +1,9 @@ +from django.urls import path + +from tom_tns.views import TNSFormView + +app_name = 'tom_tns' + +urlpatterns = [ + path('report/', TNSFormView.as_view(), name='report-tns'), +] diff --git a/tom_tns/views.py b/tom_tns/views.py new file mode 100644 index 0000000..65bda62 --- /dev/null +++ b/tom_tns/views.py @@ -0,0 +1,60 @@ +from django.urls import reverse_lazy +from django.views.generic.edit import ProcessFormView, TemplateResponseMixin, FormMixin +from django.shortcuts import redirect +from guardian.mixins import PermissionListMixin + +from tom_tns.forms import TNSReportForm, TNS_FILTER_CHOICES, TNS_INSTRUMENT_CHOICES, TNS_CLASSIFICATION_CHOICES +from tom_targets.models import Target + + +TNS_FILTER_IDS = {name: fid for fid, name in TNS_FILTER_CHOICES} +TNS_INSTRUMENT_IDS = {name: iid for iid, name in TNS_INSTRUMENT_CHOICES} +TNS_CLASSIFICATION_IDS = {name: cid for cid, name in TNS_CLASSIFICATION_CHOICES} + + +class TNSFormView(PermissionListMixin, TemplateResponseMixin, FormMixin, ProcessFormView): + """ + View that handles reporting a target to the TNS. + """ + form_class = TNSReportForm + template_name = 'tom_tns/tns_report.html' + + def get_context_data(self, **kwargs): + context = super().get_context_data(**kwargs) + context['target'] = Target.objects.get(pk=self.kwargs['pk']) + return context + + def get_initial(self): + target = Target.objects.get(pk=self.kwargs['pk']) + initial = { + 'ra': target.ra, + 'dec': target.dec, + 'reporter': f'{self.request.user.get_full_name()}, on behalf of SAGUARO', + } + photometry = target.reduceddatum_set.filter(data_type='photometry') + if photometry.exists(): + reduced_datum = photometry.latest() + initial['observation_date'] = reduced_datum.timestamp + initial['flux'] = reduced_datum.value['magnitude'] + initial['flux_error'] = reduced_datum.value['error'] + filter_name = reduced_datum.value.get('filter') + if filter_name in TNS_FILTER_IDS: + initial['filter'] = (TNS_FILTER_IDS[filter_name], filter_name) + instrument_name = reduced_datum.value.get('instrument') + if instrument_name in TNS_INSTRUMENT_IDS: + initial['instrument'] = (TNS_INSTRUMENT_IDS[instrument_name], instrument_name) + return initial + + def form_valid(self, form): + # report_id = send_tns_report(form.generate_tns_report()) + # iau_name = get_tns_report_reply(report_id, self.request) + + # update the target name + # if iau_name is not None: + # target = Target.objects.get(pk=self.kwargs['pk']) + # target.name = iau_name + # target.save() + return redirect(self.get_success_url()) + + def get_success_url(self): + return 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b/tom_tns_base/__pycache__/wsgi.cpython-310.pyc new file mode 100644 index 0000000000000000000000000000000000000000..f7485d448f9969beb93555b7277d236eb221a137 GIT binary patch literal 559 zcmYjP!EO^V5cN7~Qx=MPfS!Gg1ZzN?5JD8SL_v@qQiPO?z!2gjcm z&-fBA19Anm!7B?c@JnB5p8rWZA(LSiA5;)TdndMJ#KYrvN0ZU1n4X-SjVGh2_;7ms z@%_p5!|fFm9zxKr^20$K2$6IM5h?n3uu)T#X^5i5ZfIhQ18{5Ipo@8GRIrd2Cd9j2 zwBJe7K56IvK26ds@Kw2#0gTj+S32!kj literal 0 HcmV?d00001 diff --git a/tom_tns_base/asgi.py b/tom_tns_base/asgi.py new file mode 100644 index 0000000..93951c7 --- /dev/null +++ b/tom_tns_base/asgi.py @@ -0,0 +1,16 @@ +""" +ASGI config for tom_tns_base project. + +It exposes the ASGI callable as a module-level variable named ``application``. + +For more information on this file, see +https://docs.djangoproject.com/en/4.2/howto/deployment/asgi/ +""" + +import os + +from django.core.asgi import get_asgi_application + +os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'tom_tns_base.settings') + +application = get_asgi_application() diff --git a/tom_tns_base/settings.py b/tom_tns_base/settings.py new file mode 100644 index 0000000..1f9b8dd --- /dev/null +++ b/tom_tns_base/settings.py @@ -0,0 +1,274 @@ +""" +Django settings for tom_tns_base project. + +Generated by 'django-admin startproject' using Django 4.2.6. + +For more information on this file, see +https://docs.djangoproject.com/en/4.2/topics/settings/ + +For the full list of settings and their values, see +https://docs.djangoproject.com/en/4.2/ref/settings/ +""" + +from pathlib import Path +import os + +# Build paths inside the project like this: BASE_DIR / 'subdir'. +BASE_DIR = Path(__file__).resolve().parent.parent + + +# Quick-start development settings - unsuitable for production +# See https://docs.djangoproject.com/en/4.2/howto/deployment/checklist/ + +# SECURITY WARNING: keep the secret key used in production secret! +SECRET_KEY = 'django-insecure-&$%5ejf!3d$n^zyn$$u5k^2%8-koutb*&s-3*1on5p34nj1a0j' + +# SECURITY WARNING: don't run with debug turned on in production! +DEBUG = True + +ALLOWED_HOSTS = [] + + +# Application definition + +INSTALLED_APPS = [ + 'django.contrib.admin', + 'django.contrib.auth', + 'django.contrib.contenttypes', + 'django.contrib.sessions', + 'django.contrib.messages', + 'django.contrib.staticfiles', + 'django.contrib.sites', + 'django_extensions', + 'guardian', + 'tom_common', + 'django_comments', + 'bootstrap4', + 'crispy_forms', + 'crispy_bootstrap4', + 'rest_framework', + 'rest_framework.authtoken', + 'django_filters', + 'django_gravatar', + 'tom_targets', + 'tom_alerts', + 'tom_catalogs', + 'tom_observations', + 'tom_dataproducts', + 'tom_tns', +] + +CRISPY_TEMPLATE_PACK = 'bootstrap4' + +CRISPY_ALLOWED_TEMPLATE_PACKS = 'bootstrap4' + +MIDDLEWARE = [ + 'django.middleware.security.SecurityMiddleware', + 'django.contrib.sessions.middleware.SessionMiddleware', + 'django.middleware.common.CommonMiddleware', + 'django.middleware.csrf.CsrfViewMiddleware', + 'django.contrib.auth.middleware.AuthenticationMiddleware', + 'django.contrib.messages.middleware.MessageMiddleware', + 'django.middleware.clickjacking.XFrameOptionsMiddleware', +] + +ROOT_URLCONF = 'tom_tns_base.urls' + +TEMPLATES = [ + { + 'BACKEND': 'django.template.backends.django.DjangoTemplates', + 'DIRS': [], + 'APP_DIRS': True, + 'OPTIONS': { + 'context_processors': [ + 'django.template.context_processors.debug', + 'django.template.context_processors.request', + 'django.contrib.auth.context_processors.auth', + 'django.contrib.messages.context_processors.messages', + ], + }, + }, +] + +WSGI_APPLICATION = 'tom_tns_base.wsgi.application' + + +# Database +# https://docs.djangoproject.com/en/4.2/ref/settings/#databases + +DATABASES = { + 'default': { + 'ENGINE': 'django.db.backends.sqlite3', + 'NAME': BASE_DIR / 'db.sqlite3', + } +} + + +# Password validation +# https://docs.djangoproject.com/en/4.2/ref/settings/#auth-password-validators + +AUTH_PASSWORD_VALIDATORS = [ + { + 'NAME': 'django.contrib.auth.password_validation.UserAttributeSimilarityValidator', + }, + { + 'NAME': 'django.contrib.auth.password_validation.MinimumLengthValidator', + }, + { + 'NAME': 'django.contrib.auth.password_validation.CommonPasswordValidator', + }, + { + 'NAME': 'django.contrib.auth.password_validation.NumericPasswordValidator', + }, +] + + +# Internationalization +# https://docs.djangoproject.com/en/4.2/topics/i18n/ + +LANGUAGE_CODE = 'en-us' + +TIME_ZONE = 'UTC' + +USE_I18N = True + +USE_TZ = True + + +# Static files (CSS, JavaScript, Images) +# https://docs.djangoproject.com/en/4.2/howto/static-files/ + +STATIC_URL = 'static/' + +# Default primary key field type +# https://docs.djangoproject.com/en/4.2/ref/settings/#default-auto-field + +DEFAULT_AUTO_FIELD = 'django.db.models.BigAutoField' + +# TOM Specific configuration +TARGET_TYPE = 'SIDEREAL' + +FACILITIES = { + 'LCO': { + 'portal_url': 'https://observe.lco.global', + 'api_key': '', + }, + 'GEM': { + 'portal_url': { + 'GS': 'https://139.229.34.15:8443', + 'GN': 'https://128.171.88.221:8443', + }, + 'api_key': { + 'GS': '', + 'GN': '', + }, + 'user_email': '', + 'programs': { + 'GS-YYYYS-T-NNN': { + 'MM': 'Std: Some descriptive text', + 'NN': 'Rap: Some descriptive text' + }, + 'GN-YYYYS-T-NNN': { + 'QQ': 'Std: Some descriptive text', + 'PP': 'Rap: Some descriptive text', + }, + }, + }, +} + +# Define the valid data product types for your TOM. Be careful when removing items, as previously valid types will no +# longer be valid, and may cause issues unless the offending records are modified. +DATA_PRODUCT_TYPES = { + 'photometry': ('photometry', 'Photometry'), + 'fits_file': ('fits_file', 'FITS File'), + 'spectroscopy': ('spectroscopy', 'Spectroscopy'), + 'image_file': ('image_file', 'Image File') +} + +DATA_PROCESSORS = { + 'photometry': 'tom_dataproducts.processors.photometry_processor.PhotometryProcessor', + 'spectroscopy': 'tom_dataproducts.processors.spectroscopy_processor.SpectroscopyProcessor', +} + +TOM_FACILITY_CLASSES = [ + 'tom_observations.facilities.lco.LCOFacility', + 'tom_observations.facilities.gemini.GEMFacility', + 'tom_observations.facilities.soar.SOARFacility', + 'tom_observations.facilities.lt.LTFacility' +] + +TOM_ALERT_CLASSES = [ + 'tom_alerts.brokers.alerce.ALeRCEBroker', + 'tom_alerts.brokers.antares.ANTARESBroker', + 'tom_alerts.brokers.gaia.GaiaBroker', + 'tom_alerts.brokers.lasair.LasairBroker', + 'tom_alerts.brokers.scout.ScoutBroker', + 'tom_alerts.brokers.tns.TNSBroker', +] + +BROKERS = { + 'TNS': { + 'api_key': '' + } +} + +HARVESTERS = { + 'TNS': { + 'api_key': '' + } +} + +SAVE_TEST_ALERTS = os.getenv('SAVE_TEST_ALERTS', True) + +# Define extra target fields here. Types can be any of "number", "string", "boolean" or "datetime" +# See https://tomtoolkit.github.io/docs/target_fields for documentation on this feature +# For example: +# EXTRA_FIELDS = [ +# {'name': 'redshift', 'type': 'number'}, +# {'name': 'discoverer', 'type': 'string'} +# {'name': 'eligible', 'type': 'boolean'}, +# {'name': 'dicovery_date', 'type': 'datetime'} +# ] +EXTRA_FIELDS = [] + +# Authentication strategy can either be LOCKED (required login for all views) +# or READ_ONLY (read only access to views) +AUTH_STRATEGY = 'READ_ONLY' + +# Row-level data permissions restrict users from viewing certain objects unless they are a member of the group to which +# the object belongs. Setting this value to True will allow all `ObservationRecord`, `DataProduct`, and `ReducedDatum` +# objects to be seen by everyone. Setting it to False will allow users to specify which groups can access +# `ObservationRecord`, `DataProduct`, and `ReducedDatum` objects. +TARGET_PERMISSIONS_ONLY = True + +# URLs that should be allowed access even with AUTH_STRATEGY = LOCKED +# for example: OPEN_URLS = ['/', '/about'] +OPEN_URLS = [] + +HOOKS = { + 'target_post_save': 'tom_common.hooks.target_post_save', + 'observation_change_state': 'tom_common.hooks.observation_change_state', + 'data_product_post_upload': 'tom_dataproducts.hooks.data_product_post_upload' +} + +AUTO_THUMBNAILS = False + +THUMBNAIL_MAX_SIZE = (0, 0) + +THUMBNAIL_DEFAULT_SIZE = (200, 200) + +HINTS_ENABLED = True +HINT_LEVEL = 20 + +REST_FRAMEWORK = { + 'DEFAULT_PERMISSION_CLASSES': [ + ], + 'TEST_REQUEST_DEFAULT_FORMAT': 'json', + 'DEFAULT_PAGINATION_CLASS': 'rest_framework.pagination.LimitOffsetPagination', + 'PAGE_SIZE': 100 +} + +try: + from local_settings import * # noqa +except ImportError: + pass \ No newline at end of file diff --git a/tom_tns_base/urls.py b/tom_tns_base/urls.py new file mode 100644 index 0000000..d1e8eb0 --- /dev/null +++ b/tom_tns_base/urls.py @@ -0,0 +1,23 @@ +""" +URL configuration for tom_tns_base project. + +The `urlpatterns` list routes URLs to views. For more information please see: + https://docs.djangoproject.com/en/4.2/topics/http/urls/ +Examples: +Function views + 1. Add an import: from my_app import views + 2. Add a URL to urlpatterns: path('', views.home, name='home') +Class-based views + 1. Add an import: from other_app.views import Home + 2. Add a URL to urlpatterns: path('', Home.as_view(), name='home') +Including another URLconf + 1. Import the include() function: from django.urls import include, path + 2. Add a URL to urlpatterns: path('blog/', include('blog.urls')) +""" +from django.urls import include, path + +urlpatterns = [ + # path('', include('tom_common.urls')), + path('tns/', include('tom_tns.urls')), + path('', include('tom_common.urls')), +] diff --git a/tom_tns_base/wsgi.py b/tom_tns_base/wsgi.py new file mode 100644 index 0000000..9bdca2e --- /dev/null +++ b/tom_tns_base/wsgi.py @@ -0,0 +1,16 @@ +""" +WSGI config for tom_tns_base project. + +It exposes the WSGI callable as a module-level variable named ``application``. + +For more information on this file, see +https://docs.djangoproject.com/en/4.2/howto/deployment/wsgi/ +""" + +import os + +from django.core.wsgi import get_wsgi_application + +os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'tom_tns_base.settings') + +application = get_wsgi_application() From bd1792b04a7acc2ed7c0a3b9d563084c536b6a5c Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Mon, 6 Nov 2023 14:48:52 -0800 Subject: [PATCH 02/21] update readme / add target pk to url --- README.md | 30 ++++++++++++++++++++++++++++-- tom_tns/urls.py | 2 +- 2 files changed, 29 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index c5e9115..49f0c74 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,28 @@ -# tom_tns -TOMtoolkit module for reporting transients to the TNS +# Transient Name Server (TNS) Report and Classification plugin for TOM Toolkit +TOMtoolkit module for reporting transients to the TNS + +## Installation + +1. Install the package into your TOM environment: + ```bash + pip install tom-tns + ``` + +2. In your project `settings.py`, add `tom_tns` to your `INSTALLED_APPS` setting: + + ```python + INSTALLED_APPS = [ + ... + 'tom_nonlocalizedevents', + ] + ``` + + Also add your TNS credentials to your `settins.py` if they don't already exist for the TNS Broker. + +3. Include the tom_nonlocalizedevent URLconf in your project `urls.py`: + ```python + urlpatterns = [ + ... + path('tns/', include('tom_tns.urls', namespace='tns')), + ] + ``` diff --git a/tom_tns/urls.py b/tom_tns/urls.py index 7245f34..44018c6 100644 --- a/tom_tns/urls.py +++ b/tom_tns/urls.py @@ -5,5 +5,5 @@ app_name = 'tom_tns' urlpatterns = [ - path('report/', TNSFormView.as_view(), name='report-tns'), + path('/report/', TNSFormView.as_view(), name='report-tns'), ] From 25849f37baee10e5419b532cd7d523bd10a67d3d Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Tue, 7 Nov 2023 17:40:57 -0800 Subject: [PATCH 03/21] pull form options from tns --- tom_tns/__pycache__/forms.cpython-310.pyc | Bin 7945 -> 6745 bytes tom_tns/__pycache__/urls.cpython-310.pyc | Bin 326 -> 335 bytes tom_tns/__pycache__/views.cpython-310.pyc | Bin 2628 -> 2910 bytes tom_tns/forms.py | 163 +++++----------------- tom_tns/tns_report.py | 155 ++++++++++++++++++++ tom_tns/views.py | 17 ++- 6 files changed, 202 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import os -TNS_FILTER_CHOICES = [ - (0, "Other"), - (1, "Clear"), - (10, "U-Johnson"), - (11, "B-Johnson"), - (12, "V-Johnson"), - (13, "R-Cousins"), - (14, "I-Cousins"), - (15, "J-Bessel"), - (16, "H-Bessel"), - (17, "K-Bessel"), - (18, "L"), - (19, "M"), - (20, "u-Sloan"), - (21, "g-Sloan"), - (22, "r-Sloan"), - (23, "i-Sloan"), - (24, "z-Sloan"), - (25, "y-P1"), - (26, "w-P1"), -] - -TNS_INSTRUMENT_CHOICES = [ - (0, "Other"), -] - -TNS_CLASSIFICATION_CHOICES = [ - (0, "Other"), - (1, "SN"), - (2, "SN I"), - (3, "SN Ia"), - (4, "SN Ib"), - (5, "SN Ic"), - (6, "SN Ib/c"), - (7, "SN Ic-BL"), - (9, "SN Ibn"), - (10, "SN II"), - (11, "SN IIP"), - (12, "SN IIL"), - (13, "SN IIn"), - (14, "SN IIb"), - (15, "SN I-faint"), - (16, "SN I-rapid"), - (18, "SLSN-I"), - (19, "SLSN-II"), - (20, "SLSN-R"), - (23, "Afterglow"), - (24, "LBV"), - (25, "ILRT"), - (26, "Nova"), - (27, "CV"), - (28, "Varstar"), - (29, "AGN"), - (30, "Galaxy"), - (31, "QSO"), - (40, "Light-Echo"), - (50, "Std-spec"), - (60, "Gap"), - (61, "Gap I"), - (62, "Gap II"), - (65, "LRN"), - (66, "FBOT"), - (70, "Kilonova"), - (99, "Impostor-SN"), - (100, "SN Ia-pec"), - (102, "SN Ia-SC"), - (103, "SN Ia-91bg-like"), - (104, "SN Ia-91T-like"), - (105, "SN Iax[02cx-like]"), - (106, "SN Ia-CSM"), - (107, "SN Ib-pec"), - (108, "SN Ic-pec"), - (109, "SN Icn"), - (110, "SN Ibn/Icn"), - (111, "SN II-pec"), - (112, "SN IIn-pec"), - (115, "SN Ib-Ca-rich"), - (116, "SN Ib/c-Ca-rich"), - (117, "SN Ic-Ca-rich"), - (118, "SN Ia-Ca-rich"), - (120, "TDE"), - (121, "TDE-H"), - (122, "TDE-He"), - (123, "TDE-H-He"), - (200, "WR"), - (201, "WR-WN"), - (202, "WR-RC"), - (203, "WR-WO"), - (210, "M dwarf"), -] - - class TNSReportForm(forms.Form): ra = forms.FloatField(label='R.A.') dec = forms.FloatField(label='Dec.') - reporting_group = forms.ChoiceField(choices=[ - (66, "SAGUARO"), - ], initial=(66, "SAGUARO")) - discovery_data_source = forms.ChoiceField(choices=[ - (66, "SAGUARO"), - ], initial=(66, "SAGUARO")) + reporting_group = forms.ChoiceField(choices=[]) + discovery_data_source = forms.ChoiceField(choices=[]) reporter = forms.CharField(widget=forms.Textarea(attrs={'rows': 1})) discovery_date = forms.DateTimeField(initial=datetime.utcnow()) - at_type = forms.ChoiceField(choices=[ - (0, "Other"), - (1, "PSN"), - (2, "PNV"), - (3, "AGN"), - (4, "NUC"), - (5, "FRB"), - ], initial=(1, "PSN"), label='AT type') - archive = forms.ChoiceField(choices=[ - (0, "Other"), - (1, "SDSS"), - (2, "DSS"), - ], initial=(0, "Other")) + at_type = forms.ChoiceField(choices=[], label='AT type') + archive = forms.ChoiceField(choices=[]) archival_remarks = forms.CharField(initial="CSS") observation_date = forms.DateTimeField() flux = forms.FloatField() flux_error = forms.FloatField() - flux_units = forms.ChoiceField(choices=[ - (0, "Other"), - (1, "ABMag"), - (2, "STMag"), - (3, "VegaMag"), - (4, "erg cm(-2) sec(-1)"), - (5, "erg cm(-2) sec(-1) Hz(-1)"), - (6, "erg cm(-2) sec(-1) Ang(-1)"), - (7, "counts sec(-1)"), - (8, "Jy"), - (9, "mJy"), - (10, "Neutrino events"), - (33, "Photons sec(-1) cm(-2)"), - ], initial=(1, "ABMag")) - filter = forms.ChoiceField(choices=TNS_FILTER_CHOICES, initial=(22, "r-Sloan")) - instrument = forms.ChoiceField(choices=TNS_INSTRUMENT_CHOICES, initial=(0, "Other")) + flux_units = forms.ChoiceField(choices=[]) + filter = forms.ChoiceField(choices=[]) + instrument = forms.ChoiceField(choices=[]) limiting_flux = forms.FloatField(required=False) exposure_time = forms.FloatField(required=False) observer = forms.CharField(required=False) @@ -152,6 +36,27 @@ class TNSReportForm(forms.Form): def __init__(self, *args, **kwargs): super().__init__(*args, **kwargs) + self.fields['reporting_group'].choices = get_tns_values('groups') + self.fields['discovery_data_source'].choices = get_tns_values('groups') + self.fields['at_type'].choices = get_tns_values('at_types') + self.fields['at_type'].initial = (1, "PSN") + self.fields['filter'].choices = get_tns_values('filters') + self.fields['filter'].initial = (22, "r-Sloan") + self.fields['archive'].choices = get_tns_values('archives') + self.fields['instrument'].choices = get_tns_values('instruments') + self.fields['instrument'].initial = (0, "Other") + self.fields['flux_units'].choices = get_tns_values('units') + self.fields['flux_units'].initial = (1, "ABMag") + + # set initial group if tom_name is in the list of tns group names + tns_group_name = get_tns_credentials().get('group_name', None) + if not tns_group_name: + tns_group_name = settings.TOM_NAME + default_group = get_reverse_tns_values('groups', tns_group_name) + if default_group: + self.fields['reporting_group'].initial = default_group + self.fields['discovery_data_source'].initial = default_group + self.helper = FormHelper() self.helper.layout = Layout( Row( @@ -240,14 +145,14 @@ def generate_tns_report(self): class TargetClassifyForm(forms.Form): name = forms.CharField() classifier = forms.CharField(widget=forms.Textarea(attrs={'rows': 1})) - classification = forms.ChoiceField(choices=TNS_CLASSIFICATION_CHOICES, initial=(1, "SN")) + classification = forms.ChoiceField(choices=[], initial=(1, "SN")) redshift = forms.FloatField(required=False) group = forms.ChoiceField(choices=[ (66, "SAGUARO"), ], initial=(66, "SAGUARO")) classification_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 1})) observation_date = forms.DateTimeField() - instrument = forms.ChoiceField(choices=TNS_INSTRUMENT_CHOICES, initial=(0, "Other")) + instrument = forms.ChoiceField(choices=[], initial=(0, "Other")) exposure_time = forms.FloatField(required=False) observer = forms.CharField() reducer = forms.CharField(required=False) diff --git a/tom_tns/tns_report.py b/tom_tns/tns_report.py new file mode 100644 index 0000000..80aa2b4 --- /dev/null +++ b/tom_tns/tns_report.py @@ -0,0 +1,155 @@ +import requests +from urllib.parse import urljoin + +from django.core.cache import cache +from django.conf import settings + +import logging +logger = logging.getLogger(__name__) + + +def get_tns_credentials(): + """ + Get the TNS credentials from settings.py. + """ + return settings.BROKERS['TNS'] + + +def get_tns_values(option_list): + """ Retrieve the TNS options. These are cached for one hour. + Returns a list of tuples, each tuple containing the option value and the option label. + """ + all_tns_values = cache.get("all_tns_values", {}) + if not all_tns_values: + all_tns_values, _ = populate_tns_values() + selected_values = all_tns_values[option_list] + tuple_list = [] + if isinstance(selected_values, list): + tuple_list = [(v, v) for v in selected_values] + if isinstance(selected_values, dict): + tuple_list = [(k, v) for k, v in selected_values.items()] + return tuple_list + + +def get_reverse_tns_values(option_list, value=None): + """ Retrieve the reverse mapping of TNS options used to go from option to value. + I.e. reversed_tns_values['groups'] = { + 'group name 1': 1, + 'group name 2': 4, + 'group whatever': 129 + } + """ + reversed_tns_values = cache.get("reverse_tns_values", {}) + if not reversed_tns_values: + _, reversed_tns_values = populate_tns_values() + if not value: + return reversed_tns_values[option_list] + try: + return reversed_tns_values[option_list][value], value + except KeyError: + return None + + +def populate_tns_values(): + """pull all the values from the TNS API""" + + # Need to spoof a web based user agent or TNS will block the request :( + SPOOF_USER_AGENT = 'Mozilla/5.0 (X11; Linux i686; rv:110.0) Gecko/20100101 Firefox/110.0.' + + tns_base_url = get_tns_credentials()['tns_base_url'] + all_tns_values = {} + reversed_tns_values = {} + try: + resp = requests.get(urljoin(tns_base_url, 'api/values/'), + headers={'user-agent': SPOOF_USER_AGENT}) + resp.raise_for_status() + all_tns_values = resp.json().get('data', {}) + reversed_tns_values = reverse_tns_values(all_tns_values) + cache.set("all_tns_values", all_tns_values, 3600) + cache.set("reverse_tns_values", reversed_tns_values, 3600) + except Exception as e: + logging.warning(f"Failed to retrieve tns values: {repr(e)}") + return all_tns_values, reversed_tns_values + + +def reverse_tns_values(all_tns_values): + reversed_tns_values = {} + for key, values in all_tns_values.items(): + if isinstance(values, list): + reversed_tns_values[key] = {value: index for index, value in enumerate(values)} + elif isinstance(values, dict): + reversed_tns_values[key] = {v: k for k, v in values.items()} + return reversed_tns_values + + +def upload_files_to_tns(files): + """ + Upload files to the Transient Name Server according to this manual: + https://sandbox.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf + """ + json_data = {'api_key': TNS['api_key']} + response = requests.post(TNS_URL + '/file-upload', headers={'User-Agent': TNS_MARKER}, data=json_data, files=files) + response.raise_for_status() + new_filenames = response.json()['data'] + logger.info(f"Uploaded {', '.join(new_filenames)} to the TNS") + return new_filenames + + +def send_tns_report(data): + """ + Send a JSON bulk report to the Transient Name Server according to this manual: + https://sandbox.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf + """ + json_data = {'api_key': TNS['api_key'], 'data': data} + response = requests.post(TNS_URL + '/bulk-report', headers={'User-Agent': TNS_MARKER}, data=json_data) + response.raise_for_status() + report_id = response.json()['data']['report_id'] + logger.info(f'Sent TNS report ID {report_id:d}') + return report_id + + +def get_tns_report_reply(report_id, request): + """ + Get feedback from the Transient Name Server in response to a bulk report according to this manual: + https://sandbox.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf + + Posts an informational message in a banner on the page using ``request`` + """ + json_data = {'api_key': TNS['api_key'], 'report_id': report_id} + for _ in range(6): + time.sleep(5) + response = requests.post(TNS_URL + '/bulk-report-reply', headers={'User-Agent': TNS_MARKER}, data=json_data) + if response.ok: + break + response.raise_for_status() + feedback_section = response.json()['data']['feedback'] + feedbacks = [] + if 'at_report' in feedback_section: + feedbacks += feedback_section['at_report'] + if 'classification_report' in feedback_section: + feedbacks += feedback_section['classification_report'][0]['classification_messages'] + for feedback in feedbacks: + if '100' in feedback: # transient object was inserted + iau_name = 'AT' + feedback['100']['objname'] + log_message = f'New transient {iau_name} was created' + logger.info(log_message) + messages.success(request, log_message) + break + elif '101' in feedback: # transient object exists + iau_name = feedback['101']['prefix'] + feedback['101']['objname'] + log_message = f'Existing transient {iau_name} was reported' + logger.info(log_message) + messages.info(request, log_message) + break + elif '121' in feedback: # object name prefix has changed + iau_name = feedback['121']['new_object_name'] + log_message = f'Transient name changed to {iau_name}' + logger.info(log_message) + messages.success(request, log_message) + break + else: # this should never happen + iau_name = None + log_message = 'Problem getting response from TNS' + logger.error(log_message) + messages.error(request, log_message) + return iau_name \ No newline at end of file diff --git a/tom_tns/views.py b/tom_tns/views.py index 65bda62..75acd04 100644 --- a/tom_tns/views.py +++ b/tom_tns/views.py @@ -1,15 +1,24 @@ +from django.conf import settings from django.urls import reverse_lazy from django.views.generic.edit import ProcessFormView, TemplateResponseMixin, FormMixin from django.shortcuts import redirect from guardian.mixins import PermissionListMixin -from tom_tns.forms import TNSReportForm, TNS_FILTER_CHOICES, TNS_INSTRUMENT_CHOICES, TNS_CLASSIFICATION_CHOICES +from tom_tns.forms import TNSReportForm +from tom_tns.tns_report import get_tns_credentials, get_tns_values from tom_targets.models import Target +import json -TNS_FILTER_IDS = {name: fid for fid, name in TNS_FILTER_CHOICES} -TNS_INSTRUMENT_IDS = {name: iid for iid, name in TNS_INSTRUMENT_CHOICES} -TNS_CLASSIFICATION_IDS = {name: cid for cid, name in TNS_CLASSIFICATION_CHOICES} + +TNS_URL = 'https://sandbox.wis-tns.org/api' # TODO: change this to the main site +TNS_credentials = get_tns_credentials() +TNS_MARKER = 'tns_marker' + json.dumps({'tns_id': TNS_credentials['bot_id'], + 'type': 'bot', + 'name': TNS_credentials['bot_name']}) +TNS_FILTER_IDS = {name: fid for fid, name in get_tns_values('filters')} +TNS_INSTRUMENT_IDS = {name: iid for iid, name in get_tns_values('instruments')} +TNS_CLASSIFICATION_IDS = {name: cid for cid, name in get_tns_values('object_types')} class TNSFormView(PermissionListMixin, TemplateResponseMixin, FormMixin, ProcessFormView): From c314167135e24f303b8e3dd5355c4dcea637619b Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Wed, 8 Nov 2023 17:09:52 -0800 Subject: [PATCH 04/21] merge forms under single view --- tom_tns/forms.py | 55 +++++++----- tom_tns/templates/tom_tns/tns_report.html | 66 ++++++++++++-- tom_tns/views.py | 102 +++++++++++++++++----- 3 files changed, 172 insertions(+), 51 deletions(-) diff --git a/tom_tns/forms.py b/tom_tns/forms.py index b2823df..6ef2193 100644 --- a/tom_tns/forms.py +++ b/tom_tns/forms.py @@ -16,7 +16,7 @@ class TNSReportForm(forms.Form): dec = forms.FloatField(label='Dec.') reporting_group = forms.ChoiceField(choices=[]) discovery_data_source = forms.ChoiceField(choices=[]) - reporter = forms.CharField(widget=forms.Textarea(attrs={'rows': 1})) + reporter = forms.CharField(widget=forms.Textarea(attrs={'rows': 1}), label='Reporter Name(s) / Author List') discovery_date = forms.DateTimeField(initial=datetime.utcnow()) at_type = forms.ChoiceField(choices=[], label='AT type') archive = forms.ChoiceField(choices=[]) @@ -30,9 +30,9 @@ class TNSReportForm(forms.Form): limiting_flux = forms.FloatField(required=False) exposure_time = forms.FloatField(required=False) observer = forms.CharField(required=False) - discovery_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 1})) - photometry_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 1})) - nondetection_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 1})) + discovery_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 2})) + photometry_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 2})) + nondetection_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 2})) def __init__(self, *args, **kwargs): super().__init__(*args, **kwargs) @@ -142,41 +142,48 @@ def generate_tns_report(self): return json.dumps(report_data) -class TargetClassifyForm(forms.Form): - name = forms.CharField() - classifier = forms.CharField(widget=forms.Textarea(attrs={'rows': 1})) - classification = forms.ChoiceField(choices=[], initial=(1, "SN")) +class TNSClassifyForm(forms.Form): + object_name = forms.CharField() + classifier = forms.CharField(widget=forms.Textarea(attrs={'rows': 1}), label='Classifier Name(s) / Author List') + classification = forms.ChoiceField(choices=[]) redshift = forms.FloatField(required=False) - group = forms.ChoiceField(choices=[ - (66, "SAGUARO"), - ], initial=(66, "SAGUARO")) - classification_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 1})) + reporting_group = forms.ChoiceField(choices=[]) + classification_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 2})) observation_date = forms.DateTimeField() - instrument = forms.ChoiceField(choices=[], initial=(0, "Other")) + instrument = forms.ChoiceField(choices=[]) exposure_time = forms.FloatField(required=False) observer = forms.CharField() reducer = forms.CharField(required=False) - spectrum_type = forms.ChoiceField(choices=[ - (1, 'Object'), - (2, 'Host'), - (3, 'Sky'), - (4, 'Arcs'), - (5, 'Synthetic'), - ]) + spectrum_type = forms.ChoiceField(choices=[]) ascii_file = forms.FileField(label='ASCII file') fits_file = forms.FileField(label='FITS file', required=False) - spectrum_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 1})) + spectrum_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 2})) def __init__(self, *args, **kwargs): super().__init__(*args, **kwargs) + self.fields['reporting_group'].choices = get_tns_values('groups') + self.fields['instrument'].choices = get_tns_values('instruments') + self.fields['instrument'].initial = (0, "Other") + self.fields['classification'].choices = get_tns_values('object_types') + self.fields['classification'].initial = (1, "SN") + self.fields['spectrum_type'].choices = get_tns_values('spectra_types') + + # set initial group if tom_name is in the list of tns group names + tns_group_name = get_tns_credentials().get('group_name', None) + if not tns_group_name: + tns_group_name = settings.TOM_NAME + default_group = get_reverse_tns_values('groups', tns_group_name) + if default_group: + self.fields['reporting_group'].initial = default_group + self.helper = FormHelper() self.helper.layout = Layout( Row( Column('classifier', css_class='col-md-8'), - Column('group'), + Column('reporting_group'), ), Row( - Column('name'), + Column('object_name'), Column('classification'), Column('redshift'), ), @@ -197,7 +204,7 @@ def __init__(self, *args, **kwargs): Column('fits_file'), ), Row(Column('spectrum_remarks')), - Row(Column(Submit('submit', 'Submit Report'))), + Row(Column(Submit('submit', 'Submit Classification'))), ) def files_to_upload(self): diff --git a/tom_tns/templates/tom_tns/tns_report.html b/tom_tns/templates/tom_tns/tns_report.html index df42dce..e731fb0 100644 --- a/tom_tns/templates/tom_tns/tns_report.html +++ b/tom_tns/templates/tom_tns/tns_report.html @@ -1,14 +1,66 @@ {% extends 'tom_common/base.html' %} {% load bootstrap4 crispy_forms_tags %} {% block title %}Report to TNS{% endblock %} +{% block additional_css %} {% endblock %} {% block content %} -

Report {{ target.name }} to the TNS

-
-
-
- {% csrf_token %} - {% crispy form %} -
+

Submit {{ target.name }} Information to the TNS

+{% if default_form == 'supernova' %} +
Warning: This target {{target.names}} may have already been reported to and classified with the TNS
+{% endif %} +
+ +
+ +
+ {% if default_form == 'classify' %} +
+
Warning: This target {{target.names}} may have already been reported to the TNS
+ {% else %} +
+ {% endif %} +
+
+

Report {{ target.name }} to the TNS

+
+
+ {% csrf_token %} + {% crispy report_form %} +
+
+
+ {% if default_form == 'classify' %} +
+ {% else %} +
+ {% if default_form != 'supernova' %} +
Warning: This target {{target.names}} may not have been reported to the TNS yet
+ {% endif %} + {% endif %} +
+
+

Classify {{ target.name }} with the TNS

+
+
+ {% csrf_token %} + {% crispy classify_form %} +
+
+ {% endblock %} \ No newline at end of file diff --git a/tom_tns/views.py b/tom_tns/views.py index 75acd04..0e203e9 100644 --- a/tom_tns/views.py +++ b/tom_tns/views.py @@ -1,10 +1,11 @@ from django.conf import settings from django.urls import reverse_lazy from django.views.generic.edit import ProcessFormView, TemplateResponseMixin, FormMixin +from django.views.generic.base import TemplateView from django.shortcuts import redirect from guardian.mixins import PermissionListMixin -from tom_tns.forms import TNSReportForm +from tom_tns.forms import TNSReportForm, TNSClassifyForm from tom_tns.tns_report import get_tns_credentials, get_tns_values from tom_targets.models import Target @@ -21,16 +22,77 @@ TNS_CLASSIFICATION_IDS = {name: cid for cid, name in get_tns_values('object_types')} -class TNSFormView(PermissionListMixin, TemplateResponseMixin, FormMixin, ProcessFormView): - """ - View that handles reporting a target to the TNS. - """ - form_class = TNSReportForm +# class TNSFormView(PermissionListMixin, TemplateResponseMixin, FormMixin, ProcessFormView): +# """ +# View that handles reporting a target to the TNS. +# """ +# template_name = 'tom_tns/tns_report.html' +# +# def get_context_data(self, **kwargs): +# context = super().get_context_data(**kwargs) +# context['target'] = Target.objects.get(pk=self.kwargs['pk']) +# context['report_form'] = TNSReportForm(initial=self.get_initial()) +# context['classify_form'] = TNSClassifyForm(initial=self.get_initial()) +# return context +# +# def get_initial(self): +# target = Target.objects.get(pk=self.kwargs['pk']) +# initial = { +# 'ra': target.ra, +# 'dec': target.dec, +# 'object_name': target.name, +# 'reporter': f'{self.request.user.get_full_name()}, using {settings.TOM_NAME}', +# 'classifier': f'{self.request.user.get_full_name()}, using {settings.TOM_NAME}', +# } +# photometry = target.reduceddatum_set.filter(data_type='photometry') +# if photometry.exists(): +# reduced_datum = photometry.latest() +# initial['observation_date'] = reduced_datum.timestamp +# initial['flux'] = reduced_datum.value['magnitude'] +# initial['flux_error'] = reduced_datum.value['error'] +# filter_name = reduced_datum.value.get('filter') +# if filter_name in TNS_FILTER_IDS: +# initial['filter'] = (TNS_FILTER_IDS[filter_name], filter_name) +# instrument_name = reduced_datum.value.get('instrument') +# if instrument_name in TNS_INSTRUMENT_IDS: +# initial['instrument'] = (TNS_INSTRUMENT_IDS[instrument_name], instrument_name) +# return initial +# +# def form_valid(self, form): +# # report_id = send_tns_report(form.generate_tns_report()) +# # iau_name = get_tns_report_reply(report_id, self.request) +# +# # update the target name +# # if iau_name is not None: +# # target = Target.objects.get(pk=self.kwargs['pk']) +# # target.name = iau_name +# # target.save() +# return redirect(self.get_success_url()) +# +# def get_success_url(self): +# return reverse_lazy('targets:detail', kwargs=self.kwargs) + + +class TNSFormView(PermissionListMixin, TemplateView): template_name = 'tom_tns/tns_report.html' def get_context_data(self, **kwargs): context = super().get_context_data(**kwargs) - context['target'] = Target.objects.get(pk=self.kwargs['pk']) + target = Target.objects.get(pk=self.kwargs['pk']) + context['target'] = target + context['report_form'] = TNSReportForm(initial=self.get_initial()) + context['classify_form'] = TNSClassifyForm(initial=self.get_initial()) + # We want to establish a default tab to display. + # by default, we start on report, but change to classify if the target name starts with AT + # If the target has an SN name, we warn the user that the target has likely been classified already. + context['default_form'] = 'report' + for name in target.names: + if name.upper().startswith('AT'): + context['default_form'] = 'classify' + if name.upper().startswith('SN'): + context['default_form'] = 'supernova' + break + print(context) return context def get_initial(self): @@ -38,7 +100,9 @@ def get_initial(self): initial = { 'ra': target.ra, 'dec': target.dec, - 'reporter': f'{self.request.user.get_full_name()}, on behalf of SAGUARO', + 'object_name': target.name, + 'reporter': f'{self.request.user.get_full_name()}, using {settings.TOM_NAME}', + 'classifier': f'{self.request.user.get_full_name()}, using {settings.TOM_NAME}', } photometry = target.reduceddatum_set.filter(data_type='photometry') if photometry.exists(): @@ -54,16 +118,14 @@ def get_initial(self): initial['instrument'] = (TNS_INSTRUMENT_IDS[instrument_name], instrument_name) return initial - def form_valid(self, form): - # report_id = send_tns_report(form.generate_tns_report()) - # iau_name = get_tns_report_reply(report_id, self.request) - - # update the target name - # if iau_name is not None: - # target = Target.objects.get(pk=self.kwargs['pk']) - # target.name = iau_name - # target.save() - return redirect(self.get_success_url()) + # def get(self, request, *args, **kwargs): + # return self.render_to_response({'aform': AForm(prefix='aform_pre'), 'bform': BForm(prefix='bform_pre')}) - def get_success_url(self): - return reverse_lazy('targets:detail', kwargs=self.kwargs) + # def post(self, request, *args, **kwargs): + # aform = _get_form(request, AForm, 'aform_pre') + # bform = _get_form(request, BForm, 'bform_pre') + # if aform.is_bound and aform.is_valid(): + # # Process aform and render response + # elif bform.is_bound and bform.is_valid(): + # # Process bform and render response + # return self.render_to_response({'aform': aform, 'bform': bform}) From 4f13668040199308cea3ddf2607976108141430d Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Thu, 9 Nov 2023 17:59:40 -0800 Subject: [PATCH 05/21] refactor to use template tags --- tom_tns/forms.py | 19 +----- .../tom_tns/partials/tns_classify_form.html | 6 ++ .../tom_tns/partials/tns_report_form.html | 6 ++ tom_tns/templates/tom_tns/tns_report.html | 12 +--- tom_tns/templatetags/__init__.py | 0 tom_tns/templatetags/tns_extras.py | 62 +++++++++++++++++ tom_tns/tns_report.py | 26 ++++++- tom_tns/urls.py | 7 +- tom_tns/views.py | 68 +++++++++++-------- 9 files changed, 146 insertions(+), 60 deletions(-) create mode 100644 tom_tns/templates/tom_tns/partials/tns_classify_form.html create mode 100644 tom_tns/templates/tom_tns/partials/tns_report_form.html create mode 100644 tom_tns/templatetags/__init__.py create mode 100644 tom_tns/templatetags/tns_extras.py diff --git a/tom_tns/forms.py b/tom_tns/forms.py index 6ef2193..fcb603c 100644 --- a/tom_tns/forms.py +++ b/tom_tns/forms.py @@ -115,6 +115,7 @@ def generate_tns_report(self): "reporter": self.cleaned_data['reporter'], "discovery_datetime": self.cleaned_data['discovery_date'].strftime('%Y-%m-%d %H:%M:%S'), "at_type": self.cleaned_data['at_type'], + "remarks": self.cleaned_data["discovery_remarks"], "non_detection": { "archiveid": self.cleaned_data['archive'], "archival_remarks": self.cleaned_data['archival_remarks'], @@ -132,7 +133,7 @@ def generate_tns_report(self): "limiting_flux": self.cleaned_data['limiting_flux'], "exptime": self.cleaned_data['exposure_time'], "observer": self.cleaned_data['observer'], - "comments": self.cleaned_data['comments'], + "comments": self.cleaned_data['photometry_remarks'], }, } }, @@ -207,22 +208,6 @@ def __init__(self, *args, **kwargs): Row(Column(Submit('submit', 'Submit Classification'))), ) - def files_to_upload(self): - files_to_upload = {} - if self.cleaned_data['ascii_file'] is not None: - files_to_upload['files[0]'] = ( - os.path.basename(self.cleaned_data['ascii_file'].name), - self.cleaned_data['ascii_file'].open(), - 'text/plain' - ) - if self.cleaned_data['fits_file'] is not None: - files_to_upload['files[1]'] = ( - os.path.basename(self.cleaned_data['fits_file'].name), - self.cleaned_data['fits_file'].open(), - 'application/fits' - ) - return files_to_upload - def generate_tns_report(self, new_filenames=None): """ Generate TNS bulk classification report according to the schema in this manual: diff --git a/tom_tns/templates/tom_tns/partials/tns_classify_form.html b/tom_tns/templates/tom_tns/partials/tns_classify_form.html new file mode 100644 index 0000000..ccaf2b1 --- /dev/null +++ b/tom_tns/templates/tom_tns/partials/tns_classify_form.html @@ -0,0 +1,6 @@ +{% load crispy_forms_tags %} + +
+ {% csrf_token %} + {% crispy form %} +
\ No newline at end of file diff --git a/tom_tns/templates/tom_tns/partials/tns_report_form.html b/tom_tns/templates/tom_tns/partials/tns_report_form.html new file mode 100644 index 0000000..aa8e027 --- /dev/null +++ b/tom_tns/templates/tom_tns/partials/tns_report_form.html @@ -0,0 +1,6 @@ +{% load crispy_forms_tags %} + +
+ {% csrf_token %} + {% crispy form %} +
\ No newline at end of file diff --git a/tom_tns/templates/tom_tns/tns_report.html b/tom_tns/templates/tom_tns/tns_report.html index e731fb0..77019ab 100644 --- a/tom_tns/templates/tom_tns/tns_report.html +++ b/tom_tns/templates/tom_tns/tns_report.html @@ -1,5 +1,5 @@ {% extends 'tom_common/base.html' %} -{% load bootstrap4 crispy_forms_tags %} +{% load bootstrap4 tns_extras%} {% block title %}Report to TNS{% endblock %} {% block additional_css %} {% endblock %} {% block content %} @@ -37,10 +37,7 @@

Submit {{ tar

Report {{ target.name }} to the TNS

-
- {% csrf_token %} - {% crispy report_form %} -
+ {% report_to_tns %}

{% if default_form == 'classify' %} @@ -55,10 +52,7 @@

Report {{ target.name }} to the TNS


Classify {{ target.name }} with the TNS

-
- {% csrf_token %} - {% crispy classify_form %} -
+ {% classify_with_tns %}
diff --git a/tom_tns/templatetags/__init__.py b/tom_tns/templatetags/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tom_tns/templatetags/tns_extras.py b/tom_tns/templatetags/tns_extras.py new file mode 100644 index 0000000..b621897 --- /dev/null +++ b/tom_tns/templatetags/tns_extras.py @@ -0,0 +1,62 @@ +from django import template +from django.conf import settings + +from tom_tns.tns_report import get_tns_credentials, get_tns_values +from tom_tns.forms import TNSReportForm, TNSClassifyForm + +register = template.Library() + +TNS_FILTER_IDS = {name: fid for fid, name in get_tns_values('filters')} +TNS_INSTRUMENT_IDS = {name: iid for iid, name in get_tns_values('instruments')} +TNS_CLASSIFICATION_IDS = {name: cid for cid, name in get_tns_values('object_types')} + + +@register.inclusion_tag('tom_tns/partials/tns_report_form.html', takes_context=True) +def report_to_tns(context): + target = context['target'] + initial = { + 'ra': target.ra, + 'dec': target.dec, + 'reporter': f"{context['request'].user.get_full_name()}, using {settings.TOM_NAME}", + } + # Get photometry if available + photometry = target.reduceddatum_set.filter(data_type='photometry') + if photometry.exists(): + reduced_datum = photometry.latest() + initial['observation_date'] = reduced_datum.timestamp + initial['flux'] = reduced_datum.value['magnitude'] + initial['flux_error'] = reduced_datum.value['error'] + filter_name = reduced_datum.value.get('filter') + if filter_name in TNS_FILTER_IDS: + initial['filter'] = (TNS_FILTER_IDS[filter_name], filter_name) + instrument_name = reduced_datum.value.get('instrument') + if instrument_name in TNS_INSTRUMENT_IDS: + initial['instrument'] = (TNS_INSTRUMENT_IDS[instrument_name], instrument_name) + tns_report_form = TNSReportForm(initial=initial) + return {'target': target, + 'form': tns_report_form} + + +@register.inclusion_tag('tom_tns/partials/tns_classify_form.html', takes_context=True) +def classify_with_tns(context): + target = context['target'] + initial = { + 'object_name': target.name, + 'classifier': f'{context["request"].user.get_full_name()}, using {settings.TOM_NAME}', + } + # Get photometry if available + photometry = target.reduceddatum_set.filter(data_type='photometry') + if photometry.exists(): + reduced_datum = photometry.latest() + initial['observation_date'] = reduced_datum.timestamp + initial['flux'] = reduced_datum.value['magnitude'] + initial['flux_error'] = reduced_datum.value['error'] + filter_name = reduced_datum.value.get('filter') + if filter_name in TNS_FILTER_IDS: + initial['filter'] = (TNS_FILTER_IDS[filter_name], filter_name) + instrument_name = reduced_datum.value.get('instrument') + if instrument_name in TNS_INSTRUMENT_IDS: + initial['instrument'] = (TNS_INSTRUMENT_IDS[instrument_name], instrument_name) + tns_classify_form = TNSClassifyForm(initial=initial) + return {'target': target, + 'form': tns_classify_form} diff --git a/tom_tns/tns_report.py b/tom_tns/tns_report.py index 80aa2b4..84d378c 100644 --- a/tom_tns/tns_report.py +++ b/tom_tns/tns_report.py @@ -4,6 +4,7 @@ from django.core.cache import cache from django.conf import settings +import json import logging logger = logging.getLogger(__name__) @@ -82,13 +83,32 @@ def reverse_tns_values(all_tns_values): return reversed_tns_values -def upload_files_to_tns(files): +def build_file_dict(files): + """ + Build a dictionary of files to upload to the TNS. + """ + file_load = {} + for i, file in enumerate(files): + if file['type'] == 'ascii': + file_load[f'file[{i}]'] = (file['filename'], file['content'], 'text/plain') + if file['type'] == 'fits': + file_load[f'file[{i}]'] = (file['filename'], file['content'], 'application/fits') + return file_load + + +def pre_upload_files_to_tns(files): """ Upload files to the Transient Name Server according to this manual: https://sandbox.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf """ - json_data = {'api_key': TNS['api_key']} - response = requests.post(TNS_URL + '/file-upload', headers={'User-Agent': TNS_MARKER}, data=json_data, files=files) + tns_credentials = get_tns_credentials() + file_load = build_file_dict(files) + tns_marker = 'tns_marker' + json.dumps({'tns_id': tns_credentials['bot_id'], + 'type': 'bot', + 'name': tns_credentials['bot_name']}) + json_data = {'api_key': tns_credentials['api_key']} + response = requests.post(tns_credentials['url'] + '/file-upload', headers={'User-Agent': tns_marker}, + data=json_data, files=file_load) response.raise_for_status() new_filenames = response.json()['data'] logger.info(f"Uploaded {', '.join(new_filenames)} to the TNS") diff --git a/tom_tns/urls.py b/tom_tns/urls.py index 44018c6..b8936aa 100644 --- a/tom_tns/urls.py +++ b/tom_tns/urls.py @@ -1,9 +1,12 @@ from django.urls import path -from tom_tns.views import TNSFormView +from tom_tns.views import TNSFormView, TNSSubmitView +from tom_tns.forms import TNSReportForm, TNSClassifyForm app_name = 'tom_tns' urlpatterns = [ - path('/report/', TNSFormView.as_view(), name='report-tns'), + path('/', TNSFormView.as_view(), name='report-tns'), + path('/report', TNSSubmitView.as_view(form_class=TNSReportForm), name='submit-report'), + path('/classify', TNSSubmitView.as_view(form_class=TNSClassifyForm), name='submit-classify'), ] diff --git a/tom_tns/views.py b/tom_tns/views.py index 0e203e9..011b06e 100644 --- a/tom_tns/views.py +++ b/tom_tns/views.py @@ -1,8 +1,10 @@ from django.conf import settings from django.urls import reverse_lazy -from django.views.generic.edit import ProcessFormView, TemplateResponseMixin, FormMixin +from django.views.generic.edit import ProcessFormView, TemplateResponseMixin, FormMixin, FormView from django.views.generic.base import TemplateView from django.shortcuts import redirect +from django.http import HttpResponseRedirect +from django.contrib import messages from guardian.mixins import PermissionListMixin from tom_tns.forms import TNSReportForm, TNSClassifyForm @@ -80,8 +82,6 @@ def get_context_data(self, **kwargs): context = super().get_context_data(**kwargs) target = Target.objects.get(pk=self.kwargs['pk']) context['target'] = target - context['report_form'] = TNSReportForm(initial=self.get_initial()) - context['classify_form'] = TNSClassifyForm(initial=self.get_initial()) # We want to establish a default tab to display. # by default, we start on report, but change to classify if the target name starts with AT # If the target has an SN name, we warn the user that the target has likely been classified already. @@ -92,34 +92,30 @@ def get_context_data(self, **kwargs): if name.upper().startswith('SN'): context['default_form'] = 'supernova' break - print(context) return context - def get_initial(self): - target = Target.objects.get(pk=self.kwargs['pk']) - initial = { - 'ra': target.ra, - 'dec': target.dec, - 'object_name': target.name, - 'reporter': f'{self.request.user.get_full_name()}, using {settings.TOM_NAME}', - 'classifier': f'{self.request.user.get_full_name()}, using {settings.TOM_NAME}', - } - photometry = target.reduceddatum_set.filter(data_type='photometry') - if photometry.exists(): - reduced_datum = photometry.latest() - initial['observation_date'] = reduced_datum.timestamp - initial['flux'] = reduced_datum.value['magnitude'] - initial['flux_error'] = reduced_datum.value['error'] - filter_name = reduced_datum.value.get('filter') - if filter_name in TNS_FILTER_IDS: - initial['filter'] = (TNS_FILTER_IDS[filter_name], filter_name) - instrument_name = reduced_datum.value.get('instrument') - if instrument_name in TNS_INSTRUMENT_IDS: - initial['instrument'] = (TNS_INSTRUMENT_IDS[instrument_name], instrument_name) - return initial - - # def get(self, request, *args, **kwargs): - # return self.render_to_response({'aform': AForm(prefix='aform_pre'), 'bform': BForm(prefix='bform_pre')}) + # def get_initial(self): + # target = Target.objects.get(pk=self.kwargs['pk']) + # initial = { + # 'ra': target.ra, + # 'dec': target.dec, + # 'object_name': target.name, + # 'reporter': f'{self.request.user.get_full_name()}, using {settings.TOM_NAME}', + # 'classifier': f'{self.request.user.get_full_name()}, using {settings.TOM_NAME}', + # } + # photometry = target.reduceddatum_set.filter(data_type='photometry') + # if photometry.exists(): + # reduced_datum = photometry.latest() + # initial['observation_date'] = reduced_datum.timestamp + # initial['flux'] = reduced_datum.value['magnitude'] + # initial['flux_error'] = reduced_datum.value['error'] + # filter_name = reduced_datum.value.get('filter') + # if filter_name in TNS_FILTER_IDS: + # initial['filter'] = (TNS_FILTER_IDS[filter_name], filter_name) + # instrument_name = reduced_datum.value.get('instrument') + # if instrument_name in TNS_INSTRUMENT_IDS: + # initial['instrument'] = (TNS_INSTRUMENT_IDS[instrument_name], instrument_name) + # return initial # def post(self, request, *args, **kwargs): # aform = _get_form(request, AForm, 'aform_pre') @@ -129,3 +125,17 @@ def get_initial(self): # elif bform.is_bound and bform.is_valid(): # # Process bform and render response # return self.render_to_response({'aform': aform, 'bform': bform}) + + +class TNSSubmitView(FormView): + success_url = reverse_lazy('targets:list') + + def form_invalid(self, form): + messages.error(self.request, 'The following error was encountered when submitting to the TNS: ' + f'{form.errors.as_json()}') + return HttpResponseRedirect(self.get_success_url()) + + def form_valid(self, form): + tns_report = form.generate_tns_report() + print(tns_report) + return HttpResponseRedirect(self.get_success_url()) From 404774674f9ba308ec6bfa2f46891ec58b4f4cdd Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Mon, 13 Nov 2023 11:15:02 -0800 Subject: [PATCH 06/21] file upload infrastructure --- tom_tns/forms.py | 22 +++++++++---------- .../tom_tns/partials/tns_classify_form.html | 2 +- tom_tns/tns_report.py | 18 ++++++++------- 3 files changed, 21 insertions(+), 21 deletions(-) diff --git a/tom_tns/forms.py b/tom_tns/forms.py index fcb603c..8e76633 100644 --- a/tom_tns/forms.py +++ b/tom_tns/forms.py @@ -1,7 +1,7 @@ from django import forms from django.conf import settings -from tom_tns.tns_report import get_tns_values, get_tns_credentials, get_reverse_tns_values +from tom_tns.tns_report import get_tns_values, get_tns_credentials, get_reverse_tns_values, pre_upload_files_to_tns from crispy_forms.helper import FormHelper from crispy_forms.layout import Layout, Row, Column, Submit, HTML @@ -156,8 +156,8 @@ class TNSClassifyForm(forms.Form): observer = forms.CharField() reducer = forms.CharField(required=False) spectrum_type = forms.ChoiceField(choices=[]) - ascii_file = forms.FileField(label='ASCII file') - fits_file = forms.FileField(label='FITS file', required=False) + ascii_file = forms.FileField(label='ASCII file', required=False, widget=forms.ClearableFileInput()) + fits_file = forms.FileField(label='FITS file', required=False, widget=forms.ClearableFileInput()) spectrum_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 2})) def __init__(self, *args, **kwargs): @@ -208,17 +208,15 @@ def __init__(self, *args, **kwargs): Row(Column(Submit('submit', 'Submit Classification'))), ) - def generate_tns_report(self, new_filenames=None): + def generate_tns_report(self): """ Generate TNS bulk classification report according to the schema in this manual: https://sandbox.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf Returns the report as a JSON-formatted string """ - if new_filenames is None: - ascii_filename = os.path.basename(self.cleaned_data['ascii_file'].name) - else: - ascii_filename = new_filenames[0] + file_list = {'ascii_file': self.cleaned_data['ascii_file'], 'fits_file': self.cleaned_data['fits_file']} + tns_filenames = pre_upload_files_to_tns(file_list) report_data = { "classification_report": { "0": { @@ -237,7 +235,7 @@ def generate_tns_report(self, new_filenames=None): "observer": self.cleaned_data['observer'], "reducer": self.cleaned_data['reducer'], "spectypeid": self.cleaned_data['spectrum_type'], - "ascii_file": ascii_filename, + "ascii_file": tns_filenames['ascii_file'], "remarks": self.cleaned_data['spectrum_remarks'], }, } @@ -246,9 +244,9 @@ def generate_tns_report(self, new_filenames=None): } } if self.cleaned_data['fits_file'] is not None: - if new_filenames is None: + if tns_filenames is None: fits_filename = os.path.basename(self.cleaned_data['fits_file'].name) else: - fits_filename = new_filenames[1] - report_data['classification_report']['0']['spectra']['spectra_group']['0']['fits_file'] = fits_filename + fits_filename = tns_filenames[1] + report_data['classification_report']['0']['spectra']['spectra_group']['0']['fits_file'] = tn_filenames['fits_file'] return json.dumps(report_data) diff --git a/tom_tns/templates/tom_tns/partials/tns_classify_form.html b/tom_tns/templates/tom_tns/partials/tns_classify_form.html index ccaf2b1..dec5794 100644 --- a/tom_tns/templates/tom_tns/partials/tns_classify_form.html +++ b/tom_tns/templates/tom_tns/partials/tns_classify_form.html @@ -1,6 +1,6 @@ {% load crispy_forms_tags %} -
+ {% csrf_token %} {% crispy form %}
\ No newline at end of file diff --git a/tom_tns/tns_report.py b/tom_tns/tns_report.py index 84d378c..700dc5a 100644 --- a/tom_tns/tns_report.py +++ b/tom_tns/tns_report.py @@ -88,12 +88,13 @@ def build_file_dict(files): Build a dictionary of files to upload to the TNS. """ file_load = {} - for i, file in enumerate(files): - if file['type'] == 'ascii': - file_load[f'file[{i}]'] = (file['filename'], file['content'], 'text/plain') - if file['type'] == 'fits': - file_load[f'file[{i}]'] = (file['filename'], file['content'], 'application/fits') - return file_load + i = 0 + for file in files: + if files[file]: + file_load[f'file[{i}]'] = (files[file].name, files[file].open(), files[file].content_type) + files[file] = f'file[{i}]' + i += 1 + return file_load, files def pre_upload_files_to_tns(files): @@ -102,16 +103,17 @@ def pre_upload_files_to_tns(files): https://sandbox.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf """ tns_credentials = get_tns_credentials() - file_load = build_file_dict(files) + file_load, files = build_file_dict(files) tns_marker = 'tns_marker' + json.dumps({'tns_id': tns_credentials['bot_id'], 'type': 'bot', 'name': tns_credentials['bot_name']}) json_data = {'api_key': tns_credentials['api_key']} - response = requests.post(tns_credentials['url'] + '/file-upload', headers={'User-Agent': tns_marker}, + response = requests.post(tns_credentials['tns_base_url'] + '/file-upload', headers={'User-Agent': tns_marker}, data=json_data, files=file_load) response.raise_for_status() new_filenames = response.json()['data'] logger.info(f"Uploaded {', '.join(new_filenames)} to the TNS") + return new_filenames From aacfb56d42f7e7e95634058e81439fad6a9f0b9b Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Mon, 13 Nov 2023 17:32:41 -0800 Subject: [PATCH 07/21] Automatically rename target on TNS response --- tom_tns/forms.py | 36 +++++++++------ tom_tns/tns_report.py | 64 +++++++++++++++++++------ tom_tns/views.py | 105 ++++++++---------------------------------- 3 files changed, 89 insertions(+), 116 deletions(-) diff --git a/tom_tns/forms.py b/tom_tns/forms.py index 8e76633..e205d24 100644 --- a/tom_tns/forms.py +++ b/tom_tns/forms.py @@ -1,7 +1,10 @@ +import requests + from django import forms from django.conf import settings -from tom_tns.tns_report import get_tns_values, get_tns_credentials, get_reverse_tns_values, pre_upload_files_to_tns +from tom_tns.tns_report import get_tns_values, get_tns_credentials, get_reverse_tns_values, pre_upload_files_to_tns,\ + BadTnsRequest from crispy_forms.helper import FormHelper from crispy_forms.layout import Layout, Row, Column, Submit, HTML @@ -140,7 +143,7 @@ def generate_tns_report(self): } } } - return json.dumps(report_data) + return report_data class TNSClassifyForm(forms.Form): @@ -215,16 +218,21 @@ def generate_tns_report(self): Returns the report as a JSON-formatted string """ - file_list = {'ascii_file': self.cleaned_data['ascii_file'], 'fits_file': self.cleaned_data['fits_file']} - tns_filenames = pre_upload_files_to_tns(file_list) + file_list = {'ascii_file': self.cleaned_data['ascii_file'], + 'fits_file': self.cleaned_data['fits_file'], + 'other_files': []} + try: + tns_filenames = pre_upload_files_to_tns(file_list) + except requests.exceptions.HTTPError as e: + return {'message': f"ERROR: {e}"} report_data = { "classification_report": { "0": { - "name": self.cleaned_data['name'], + "name": self.cleaned_data['object_name'], "classifier": self.cleaned_data['classifier'], "objtypeid": self.cleaned_data['classification'], "redshift": self.cleaned_data['redshift'], - "groupid": self.cleaned_data['group'], + "groupid": self.cleaned_data['reporting_group'], "remarks": self.cleaned_data['classification_remarks'], "spectra": { "spectra-group": { @@ -235,7 +243,6 @@ def generate_tns_report(self): "observer": self.cleaned_data['observer'], "reducer": self.cleaned_data['reducer'], "spectypeid": self.cleaned_data['spectrum_type'], - "ascii_file": tns_filenames['ascii_file'], "remarks": self.cleaned_data['spectrum_remarks'], }, } @@ -243,10 +250,11 @@ def generate_tns_report(self): } } } - if self.cleaned_data['fits_file'] is not None: - if tns_filenames is None: - fits_filename = os.path.basename(self.cleaned_data['fits_file'].name) - else: - fits_filename = tns_filenames[1] - report_data['classification_report']['0']['spectra']['spectra_group']['0']['fits_file'] = tn_filenames['fits_file'] - return json.dumps(report_data) + if tns_filenames: + report_data['classification_report']['0']['spectra']['spectra-group']['0']['ascii_file'] = \ + tns_filenames['ascii_file'] + report_data['classification_report']['0']['spectra']['spectra-group']['0']['fits_file'] = \ + tns_filenames['fits_file'] + else: + raise BadTnsRequest("No files were uploaded to TNS") + return report_data diff --git a/tom_tns/tns_report.py b/tom_tns/tns_report.py index 700dc5a..ad755b3 100644 --- a/tom_tns/tns_report.py +++ b/tom_tns/tns_report.py @@ -3,17 +3,28 @@ from django.core.cache import cache from django.conf import settings +from django.contrib import messages import json +import time import logging logger = logging.getLogger(__name__) +class BadTnsRequest(Exception): + """ This Exception will be raised by errors during the TNS submission process """ + pass + + def get_tns_credentials(): """ Get the TNS credentials from settings.py. """ - return settings.BROKERS['TNS'] + tns_info = settings.BROKERS['TNS'] + tns_info['marker'] = 'tns_marker' + json.dumps({'tns_id': tns_info['bot_id'], + 'type': 'bot', + 'name': tns_info['bot_name']}) + return tns_info def get_tns_values(option_list): @@ -26,7 +37,7 @@ def get_tns_values(option_list): selected_values = all_tns_values[option_list] tuple_list = [] if isinstance(selected_values, list): - tuple_list = [(v, v) for v in selected_values] + tuple_list = [(i, v) for i, v in enumerate(selected_values)] if isinstance(selected_values, dict): tuple_list = [(k, v) for k, v in selected_values.items()] return tuple_list @@ -89,11 +100,25 @@ def build_file_dict(files): """ file_load = {} i = 0 - for file in files: - if files[file]: - file_load[f'file[{i}]'] = (files[file].name, files[file].open(), files[file].content_type) - files[file] = f'file[{i}]' + if files['ascii_file']: + file_load[f'file[{i}]'] = (files['ascii_file'].name, + files['ascii_file'].open(), + files['ascii_file'].content_type) + files['ascii_file'] = i + i += 1 + if files['fits_file']: + file_load[f'file[{i}]'] = (files['fits_file'].name, + files['fits_file'].open(), + files['fits_file'].content_type) + files['fits_file'] = i + i += 1 + other_index = [] + for file in files['other_files']: + if file: + file_load[f'file[{i}]'] = (file.name, file.open(), file.content_type) + other_index.append(i) i += 1 + files['other_files'] = other_index return file_load, files @@ -104,14 +129,18 @@ def pre_upload_files_to_tns(files): """ tns_credentials = get_tns_credentials() file_load, files = build_file_dict(files) - tns_marker = 'tns_marker' + json.dumps({'tns_id': tns_credentials['bot_id'], - 'type': 'bot', - 'name': tns_credentials['bot_name']}) + print(file_load) + if not file_load: + return None + tns_marker = tns_credentials['marker'] json_data = {'api_key': tns_credentials['api_key']} response = requests.post(tns_credentials['tns_base_url'] + '/file-upload', headers={'User-Agent': tns_marker}, data=json_data, files=file_load) + print(response.text) + print(response) + print(response.json()) response.raise_for_status() - new_filenames = response.json()['data'] + new_filenames = response.json().get('data', {}) logger.info(f"Uploaded {', '.join(new_filenames)} to the TNS") return new_filenames @@ -122,8 +151,11 @@ def send_tns_report(data): Send a JSON bulk report to the Transient Name Server according to this manual: https://sandbox.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf """ - json_data = {'api_key': TNS['api_key'], 'data': data} - response = requests.post(TNS_URL + '/bulk-report', headers={'User-Agent': TNS_MARKER}, data=json_data) + tns_info = get_tns_credentials() + json_data = {'api_key': tns_info['api_key'], 'data': data} + response = requests.post(tns_info['tns_base_url'] + '/bulk-report', + headers={'User-Agent': tns_info['marker']}, + data=json_data) response.raise_for_status() report_id = response.json()['data']['report_id'] logger.info(f'Sent TNS report ID {report_id:d}') @@ -137,10 +169,12 @@ def get_tns_report_reply(report_id, request): Posts an informational message in a banner on the page using ``request`` """ - json_data = {'api_key': TNS['api_key'], 'report_id': report_id} + tns_info = get_tns_credentials() + json_data = {'api_key': tns_info['api_key'], 'report_id': report_id} for _ in range(6): time.sleep(5) - response = requests.post(TNS_URL + '/bulk-report-reply', headers={'User-Agent': TNS_MARKER}, data=json_data) + response = requests.post(tns_info['tns_base_url'] + '/bulk-report-reply', + headers={'User-Agent': tns_info['marker']}, data=json_data) if response.ok: break response.raise_for_status() @@ -174,4 +208,4 @@ def get_tns_report_reply(report_id, request): log_message = 'Problem getting response from TNS' logger.error(log_message) messages.error(request, log_message) - return iau_name \ No newline at end of file + return iau_name diff --git a/tom_tns/views.py b/tom_tns/views.py index 011b06e..bac3eff 100644 --- a/tom_tns/views.py +++ b/tom_tns/views.py @@ -1,3 +1,4 @@ +import requests.exceptions from django.conf import settings from django.urls import reverse_lazy from django.views.generic.edit import ProcessFormView, TemplateResponseMixin, FormMixin, FormView @@ -8,8 +9,9 @@ from guardian.mixins import PermissionListMixin from tom_tns.forms import TNSReportForm, TNSClassifyForm -from tom_tns.tns_report import get_tns_credentials, get_tns_values -from tom_targets.models import Target +from tom_tns.tns_report import get_tns_credentials, get_tns_values, send_tns_report, get_tns_report_reply,\ + BadTnsRequest +from tom_targets.models import Target, TargetName import json @@ -24,57 +26,6 @@ TNS_CLASSIFICATION_IDS = {name: cid for cid, name in get_tns_values('object_types')} -# class TNSFormView(PermissionListMixin, TemplateResponseMixin, FormMixin, ProcessFormView): -# """ -# View that handles reporting a target to the TNS. -# """ -# template_name = 'tom_tns/tns_report.html' -# -# def get_context_data(self, **kwargs): -# context = super().get_context_data(**kwargs) -# context['target'] = Target.objects.get(pk=self.kwargs['pk']) -# context['report_form'] = TNSReportForm(initial=self.get_initial()) -# context['classify_form'] = TNSClassifyForm(initial=self.get_initial()) -# return context -# -# def get_initial(self): -# target = Target.objects.get(pk=self.kwargs['pk']) -# initial = { -# 'ra': target.ra, -# 'dec': target.dec, -# 'object_name': target.name, -# 'reporter': f'{self.request.user.get_full_name()}, using {settings.TOM_NAME}', -# 'classifier': f'{self.request.user.get_full_name()}, using {settings.TOM_NAME}', -# } -# photometry = target.reduceddatum_set.filter(data_type='photometry') -# if photometry.exists(): -# reduced_datum = photometry.latest() -# initial['observation_date'] = reduced_datum.timestamp -# initial['flux'] = reduced_datum.value['magnitude'] -# initial['flux_error'] = reduced_datum.value['error'] -# filter_name = reduced_datum.value.get('filter') -# if filter_name in TNS_FILTER_IDS: -# initial['filter'] = (TNS_FILTER_IDS[filter_name], filter_name) -# instrument_name = reduced_datum.value.get('instrument') -# if instrument_name in TNS_INSTRUMENT_IDS: -# initial['instrument'] = (TNS_INSTRUMENT_IDS[instrument_name], instrument_name) -# return initial -# -# def form_valid(self, form): -# # report_id = send_tns_report(form.generate_tns_report()) -# # iau_name = get_tns_report_reply(report_id, self.request) -# -# # update the target name -# # if iau_name is not None: -# # target = Target.objects.get(pk=self.kwargs['pk']) -# # target.name = iau_name -# # target.save() -# return redirect(self.get_success_url()) -# -# def get_success_url(self): -# return reverse_lazy('targets:detail', kwargs=self.kwargs) - - class TNSFormView(PermissionListMixin, TemplateView): template_name = 'tom_tns/tns_report.html' @@ -94,38 +45,6 @@ def get_context_data(self, **kwargs): break return context - # def get_initial(self): - # target = Target.objects.get(pk=self.kwargs['pk']) - # initial = { - # 'ra': target.ra, - # 'dec': target.dec, - # 'object_name': target.name, - # 'reporter': f'{self.request.user.get_full_name()}, using {settings.TOM_NAME}', - # 'classifier': f'{self.request.user.get_full_name()}, using {settings.TOM_NAME}', - # } - # photometry = target.reduceddatum_set.filter(data_type='photometry') - # if photometry.exists(): - # reduced_datum = photometry.latest() - # initial['observation_date'] = reduced_datum.timestamp - # initial['flux'] = reduced_datum.value['magnitude'] - # initial['flux_error'] = reduced_datum.value['error'] - # filter_name = reduced_datum.value.get('filter') - # if filter_name in TNS_FILTER_IDS: - # initial['filter'] = (TNS_FILTER_IDS[filter_name], filter_name) - # instrument_name = reduced_datum.value.get('instrument') - # if instrument_name in TNS_INSTRUMENT_IDS: - # initial['instrument'] = (TNS_INSTRUMENT_IDS[instrument_name], instrument_name) - # return initial - - # def post(self, request, *args, **kwargs): - # aform = _get_form(request, AForm, 'aform_pre') - # bform = _get_form(request, BForm, 'bform_pre') - # if aform.is_bound and aform.is_valid(): - # # Process aform and render response - # elif bform.is_bound and bform.is_valid(): - # # Process bform and render response - # return self.render_to_response({'aform': aform, 'bform': bform}) - class TNSSubmitView(FormView): success_url = reverse_lazy('targets:list') @@ -136,6 +55,18 @@ def form_invalid(self, form): return HttpResponseRedirect(self.get_success_url()) def form_valid(self, form): - tns_report = form.generate_tns_report() - print(tns_report) + try: + tns_report = form.generate_tns_report() + report_id = send_tns_report(json.dumps(tns_report)) + iau_name = get_tns_report_reply(report_id, self.request) + # update the target name + if iau_name is not None: + target = Target.objects.get(pk=self.kwargs['pk']) + old_name = target.name + target.name = iau_name + target.save() + new_alias = TargetName(name=old_name, target=target) + new_alias.save() + except (requests.exceptions.HTTPError, BadTnsRequest) as e: + messages.error(self.request, f'TNS returned an error: {e}') return HttpResponseRedirect(self.get_success_url()) From 071ddf83407745e7447610ffcd61d9eabe152212 Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Wed, 15 Nov 2023 13:41:48 -0800 Subject: [PATCH 08/21] clean up classification submission --- tom_tns/forms.py | 6 +- tom_tns/templatetags/tns_extras.py | 2 +- tom_tns/tns_report.py | 90 +++++++++++++++++------------- 3 files changed, 54 insertions(+), 44 deletions(-) diff --git a/tom_tns/forms.py b/tom_tns/forms.py index e205d24..bf7c792 100644 --- a/tom_tns/forms.py +++ b/tom_tns/forms.py @@ -159,7 +159,7 @@ class TNSClassifyForm(forms.Form): observer = forms.CharField() reducer = forms.CharField(required=False) spectrum_type = forms.ChoiceField(choices=[]) - ascii_file = forms.FileField(label='ASCII file', required=False, widget=forms.ClearableFileInput()) + ascii_file = forms.FileField(label='ASCII file', required=True, widget=forms.ClearableFileInput()) fits_file = forms.FileField(label='FITS file', required=False, widget=forms.ClearableFileInput()) spectrum_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 2})) @@ -252,9 +252,9 @@ def generate_tns_report(self): } if tns_filenames: report_data['classification_report']['0']['spectra']['spectra-group']['0']['ascii_file'] = \ - tns_filenames['ascii_file'] + tns_filenames.get('ascii_file', '') report_data['classification_report']['0']['spectra']['spectra-group']['0']['fits_file'] = \ - tns_filenames['fits_file'] + tns_filenames.get('fits_file', '') else: raise BadTnsRequest("No files were uploaded to TNS") return report_data diff --git a/tom_tns/templatetags/tns_extras.py b/tom_tns/templatetags/tns_extras.py index b621897..79f8be3 100644 --- a/tom_tns/templatetags/tns_extras.py +++ b/tom_tns/templatetags/tns_extras.py @@ -41,7 +41,7 @@ def report_to_tns(context): def classify_with_tns(context): target = context['target'] initial = { - 'object_name': target.name, + 'object_name': target.name.replace('AT', '').replace('SN', ''), 'classifier': f'{context["request"].user.get_full_name()}, using {settings.TOM_NAME}', } # Get photometry if available diff --git a/tom_tns/tns_report.py b/tom_tns/tns_report.py index ad755b3..abc9a26 100644 --- a/tom_tns/tns_report.py +++ b/tom_tns/tns_report.py @@ -98,28 +98,18 @@ def build_file_dict(files): """ Build a dictionary of files to upload to the TNS. """ + new_files = {} file_load = {} i = 0 if files['ascii_file']: - file_load[f'file[{i}]'] = (files['ascii_file'].name, - files['ascii_file'].open(), - files['ascii_file'].content_type) - files['ascii_file'] = i + file_load[f'files[{i}]'] = (files['ascii_file'].name, files['ascii_file'].open(), 'text/plain') + new_files['ascii_file'] = i i += 1 if files['fits_file']: - file_load[f'file[{i}]'] = (files['fits_file'].name, - files['fits_file'].open(), - files['fits_file'].content_type) - files['fits_file'] = i + file_load[f'files[{i}]'] = (files['fits_file'].name, files['fits_file'].open('rb'), 'application/fits') + new_files['fits_file'] = i i += 1 - other_index = [] - for file in files['other_files']: - if file: - file_load[f'file[{i}]'] = (file.name, file.open(), file.content_type) - other_index.append(i) - i += 1 - files['other_files'] = other_index - return file_load, files + return file_load, new_files def pre_upload_files_to_tns(files): @@ -128,22 +118,24 @@ def pre_upload_files_to_tns(files): https://sandbox.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf """ tns_credentials = get_tns_credentials() - file_load, files = build_file_dict(files) - print(file_load) + file_load, new_files = build_file_dict(files) if not file_load: return None tns_marker = tns_credentials['marker'] json_data = {'api_key': tns_credentials['api_key']} response = requests.post(tns_credentials['tns_base_url'] + '/file-upload', headers={'User-Agent': tns_marker}, data=json_data, files=file_load) - print(response.text) - print(response) - print(response.json()) response.raise_for_status() new_filenames = response.json().get('data', {}) logger.info(f"Uploaded {', '.join(new_filenames)} to the TNS") - - return new_filenames + if not new_filenames: + return None + for file in new_files: + try: + new_files[file] = new_filenames[new_files[file]] + except IndexError: + new_files[file] = '' + return new_files def send_tns_report(data): @@ -162,23 +154,8 @@ def send_tns_report(data): return report_id -def get_tns_report_reply(report_id, request): - """ - Get feedback from the Transient Name Server in response to a bulk report according to this manual: - https://sandbox.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf - - Posts an informational message in a banner on the page using ``request`` - """ - tns_info = get_tns_credentials() - json_data = {'api_key': tns_info['api_key'], 'report_id': report_id} - for _ in range(6): - time.sleep(5) - response = requests.post(tns_info['tns_base_url'] + '/bulk-report-reply', - headers={'User-Agent': tns_info['marker']}, data=json_data) - if response.ok: - break - response.raise_for_status() - feedback_section = response.json()['data']['feedback'] +def parse_object_from_tns_response(response_json, request): + feedback_section = response_json['data']['feedback'] feedbacks = [] if 'at_report' in feedback_section: feedbacks += feedback_section['at_report'] @@ -209,3 +186,36 @@ def get_tns_report_reply(report_id, request): logger.error(log_message) messages.error(request, log_message) return iau_name + + +def get_tns_report_reply(report_id, request): + """ + Get feedback from the Transient Name Server in response to a bulk report according to this manual: + https://sandbox.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf + + Posts an informational message in a banner on the page using ``request`` + """ + tns_info = get_tns_credentials() + reply_data = {'api_key': tns_info['api_key'], 'report_id': report_id} + attempts = 0 + # TNS Submissions return immediately with an id, which you must then check to see if the message + # was processed, and if it was accepted or rejected. Here we check up to 10 times, waiting 1s + # between checks. Under normal circumstances, it should be processed within a few seconds. + while attempts < 10: + response = requests.post(tns_info['tns_base_url'] + '/bulk-report-reply', + headers={'User-Agent': tns_info['marker']}, data=reply_data) + attempts += 1 + # A 404 response means the report has not been processed yet + if response.status_code == 404: + time.sleep(1) + # A 400 response means the report failed with certain errors + elif response.status_code == 400: + raise BadTnsRequest(f"TNS submission failed with feedback: " + f"{response.json().get('data', {}).get('feedback', {})}") + # A 200 response means the report was successful, and we can parse out the object name + elif response.status_code == 200: + iau_name = parse_object_from_tns_response(response.json(), request) + break + else: + raise BadTnsRequest(f"TNS submission failed with status code {response.status_code}") + return iau_name From af41d889945f8a5798ae3e4b4a02d36e1c17b0bf Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Wed, 15 Nov 2023 13:56:59 -0800 Subject: [PATCH 09/21] clean up a few things' --- tom_tns/forms.py | 2 -- tom_tns/templatetags/tns_extras.py | 2 +- tom_tns/views.py | 22 ++++++---------------- 3 files changed, 7 insertions(+), 19 deletions(-) diff --git a/tom_tns/forms.py b/tom_tns/forms.py index bf7c792..9ae4acb 100644 --- a/tom_tns/forms.py +++ b/tom_tns/forms.py @@ -10,8 +10,6 @@ from crispy_forms.layout import Layout, Row, Column, Submit, HTML from crispy_forms.bootstrap import AppendedText from datetime import datetime -import json -import os class TNSReportForm(forms.Form): diff --git a/tom_tns/templatetags/tns_extras.py b/tom_tns/templatetags/tns_extras.py index 79f8be3..8eaccb6 100644 --- a/tom_tns/templatetags/tns_extras.py +++ b/tom_tns/templatetags/tns_extras.py @@ -1,7 +1,7 @@ from django import template from django.conf import settings -from tom_tns.tns_report import get_tns_credentials, get_tns_values +from tom_tns.tns_report import get_tns_values from tom_tns.forms import TNSReportForm, TNSClassifyForm register = template.Library() diff --git a/tom_tns/views.py b/tom_tns/views.py index bac3eff..dd0bba3 100644 --- a/tom_tns/views.py +++ b/tom_tns/views.py @@ -1,31 +1,19 @@ import requests.exceptions -from django.conf import settings + from django.urls import reverse_lazy -from django.views.generic.edit import ProcessFormView, TemplateResponseMixin, FormMixin, FormView +from django.views.generic.edit import FormView from django.views.generic.base import TemplateView -from django.shortcuts import redirect from django.http import HttpResponseRedirect from django.contrib import messages from guardian.mixins import PermissionListMixin -from tom_tns.forms import TNSReportForm, TNSClassifyForm -from tom_tns.tns_report import get_tns_credentials, get_tns_values, send_tns_report, get_tns_report_reply,\ +from tom_tns.tns_report import send_tns_report, get_tns_report_reply,\ BadTnsRequest from tom_targets.models import Target, TargetName import json -TNS_URL = 'https://sandbox.wis-tns.org/api' # TODO: change this to the main site -TNS_credentials = get_tns_credentials() -TNS_MARKER = 'tns_marker' + json.dumps({'tns_id': TNS_credentials['bot_id'], - 'type': 'bot', - 'name': TNS_credentials['bot_name']}) -TNS_FILTER_IDS = {name: fid for fid, name in get_tns_values('filters')} -TNS_INSTRUMENT_IDS = {name: iid for iid, name in get_tns_values('instruments')} -TNS_CLASSIFICATION_IDS = {name: cid for cid, name in get_tns_values('object_types')} - - class TNSFormView(PermissionListMixin, TemplateView): template_name = 'tom_tns/tns_report.html' @@ -47,7 +35,9 @@ def get_context_data(self, **kwargs): class TNSSubmitView(FormView): - success_url = reverse_lazy('targets:list') + + def get_success_url(self): + return reverse_lazy('targets:detail', kwargs=self.kwargs) def form_invalid(self, form): messages.error(self.request, 'The following error was encountered when submitting to the TNS: ' From 4d84419ac0a0a3651ce2f517b6ef80b13245583f Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Wed, 15 Nov 2023 15:44:44 -0800 Subject: [PATCH 10/21] add doc strings --- tom_tns/forms.py | 17 +++++----- tom_tns/templatetags/tns_extras.py | 10 ++++++ tom_tns/tns_report.py | 50 ++++++++++++++++++------------ tom_tns/views.py | 18 +++++++++-- 4 files changed, 67 insertions(+), 28 deletions(-) diff --git a/tom_tns/forms.py b/tom_tns/forms.py index 9ae4acb..2ba5fbb 100644 --- a/tom_tns/forms.py +++ b/tom_tns/forms.py @@ -36,6 +36,10 @@ class TNSReportForm(forms.Form): nondetection_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 2})) def __init__(self, *args, **kwargs): + """ + Initialize choices from TNS API values, and set common defaults. + Also define the form layout using crispy_forms. + """ super().__init__(*args, **kwargs) self.fields['reporting_group'].choices = get_tns_values('groups') self.fields['discovery_data_source'].choices = get_tns_values('groups') @@ -162,6 +166,10 @@ class TNSClassifyForm(forms.Form): spectrum_remarks = forms.CharField(required=False, widget=forms.Textarea(attrs={'rows': 2})) def __init__(self, *args, **kwargs): + """ + Set initial choices for the classification form using the TNS API values and set default values. + Also define the form layout using crispy-forms. + """ super().__init__(*args, **kwargs) self.fields['reporting_group'].choices = get_tns_values('groups') self.fields['instrument'].choices = get_tns_values('instruments') @@ -241,6 +249,8 @@ def generate_tns_report(self): "observer": self.cleaned_data['observer'], "reducer": self.cleaned_data['reducer'], "spectypeid": self.cleaned_data['spectrum_type'], + "ascii_file": tns_filenames.get('ascii_file', ''), + "fits_file": tns_filenames.get('fits_file', ''), "remarks": self.cleaned_data['spectrum_remarks'], }, } @@ -248,11 +258,4 @@ def generate_tns_report(self): } } } - if tns_filenames: - report_data['classification_report']['0']['spectra']['spectra-group']['0']['ascii_file'] = \ - tns_filenames.get('ascii_file', '') - report_data['classification_report']['0']['spectra']['spectra-group']['0']['fits_file'] = \ - tns_filenames.get('fits_file', '') - else: - raise BadTnsRequest("No files were uploaded to TNS") return report_data diff --git a/tom_tns/templatetags/tns_extras.py b/tom_tns/templatetags/tns_extras.py index 8eaccb6..ee0163c 100644 --- a/tom_tns/templatetags/tns_extras.py +++ b/tom_tns/templatetags/tns_extras.py @@ -6,6 +6,8 @@ register = template.Library() + +# Define form Choices from Cached TNS Values TNS_FILTER_IDS = {name: fid for fid, name in get_tns_values('filters')} TNS_INSTRUMENT_IDS = {name: iid for iid, name in get_tns_values('instruments')} TNS_CLASSIFICATION_IDS = {name: cid for cid, name in get_tns_values('object_types')} @@ -13,6 +15,10 @@ @register.inclusion_tag('tom_tns/partials/tns_report_form.html', takes_context=True) def report_to_tns(context): + """ + Build context data for TNS AT Report Form. + Includes the latest Photometry data if available. + """ target = context['target'] initial = { 'ra': target.ra, @@ -39,6 +45,10 @@ def report_to_tns(context): @register.inclusion_tag('tom_tns/partials/tns_classify_form.html', takes_context=True) def classify_with_tns(context): + """ + Build context data for TNS Classification Form. + Includes the latest Photometry data if available. + """ target = context['target'] initial = { 'object_name': target.name.replace('AT', '').replace('SN', ''), diff --git a/tom_tns/tns_report.py b/tom_tns/tns_report.py index abc9a26..1cf4867 100644 --- a/tom_tns/tns_report.py +++ b/tom_tns/tns_report.py @@ -19,11 +19,13 @@ class BadTnsRequest(Exception): def get_tns_credentials(): """ Get the TNS credentials from settings.py. + This should include the bot_id, bot_name, api_key, tns_base_url, and possibly group_name. """ tns_info = settings.BROKERS['TNS'] - tns_info['marker'] = 'tns_marker' + json.dumps({'tns_id': tns_info['bot_id'], + # Build TNS Marker using Bot info + tns_info['marker'] = 'tns_marker' + json.dumps({'tns_id': tns_info.get('bot_id', None), 'type': 'bot', - 'name': tns_info['bot_name']}) + 'name': tns_info.get('bot_name', None)}) return tns_info @@ -43,19 +45,14 @@ def get_tns_values(option_list): return tuple_list -def get_reverse_tns_values(option_list, value=None): - """ Retrieve the reverse mapping of TNS options used to go from option to value. - I.e. reversed_tns_values['groups'] = { - 'group name 1': 1, - 'group name 2': 4, - 'group whatever': 129 - } +def get_reverse_tns_values(option_list, value): + """ + Retrieve the reverse mapping of TNS options. Used to go from option to value for a specific list of options. + Returns a tuple of the option value and the option label. """ reversed_tns_values = cache.get("reverse_tns_values", {}) if not reversed_tns_values: _, reversed_tns_values = populate_tns_values() - if not value: - return reversed_tns_values[option_list] try: return reversed_tns_values[option_list][value], value except KeyError: @@ -63,12 +60,13 @@ def get_reverse_tns_values(option_list, value=None): def populate_tns_values(): - """pull all the values from the TNS API""" + """pull all the values from the TNS API and Cache for an hour""" # Need to spoof a web based user agent or TNS will block the request :( SPOOF_USER_AGENT = 'Mozilla/5.0 (X11; Linux i686; rv:110.0) Gecko/20100101 Firefox/110.0.' - tns_base_url = get_tns_credentials()['tns_base_url'] + # Use sandbox URL if no url found in settings.py + tns_base_url = get_tns_credentials().get('tns_base_url', 'https://sandbox.wis-tns.org/api') all_tns_values = {} reversed_tns_values = {} try: @@ -85,6 +83,7 @@ def populate_tns_values(): def reverse_tns_values(all_tns_values): + """reverse the values from the TNS API""" reversed_tns_values = {} for key, values in all_tns_values.items(): if isinstance(values, list): @@ -96,7 +95,12 @@ def reverse_tns_values(all_tns_values): def build_file_dict(files): """ - Build a dictionary of files to upload to the TNS. + Build a dictionary of files to upload to the TNS as well as a dictionary connecting the uploaded name to the new + name returned from TNS. + TNS requires a specific format for the file upload: + https://www.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf + file_Load: {files[0]: Filename, files[1]: Filename2, ...} + new_files: {ascii_file: <>, fits_file: <>, ...} """ new_files = {} file_load = {} @@ -121,15 +125,18 @@ def pre_upload_files_to_tns(files): file_load, new_files = build_file_dict(files) if not file_load: return None + # build request parameters tns_marker = tns_credentials['marker'] - json_data = {'api_key': tns_credentials['api_key']} + upload_data = {'api_key': tns_credentials['api_key']} response = requests.post(tns_credentials['tns_base_url'] + '/file-upload', headers={'User-Agent': tns_marker}, - data=json_data, files=file_load) + data=upload_data, files=file_load) response.raise_for_status() + # If successful, TNS returns a list of new filenames new_filenames = response.json().get('data', {}) logger.info(f"Uploaded {', '.join(new_filenames)} to the TNS") if not new_filenames: return None + # Return dictionary of updated TNS names for each uploaded file_type for file in new_files: try: new_files[file] = new_filenames[new_files[file]] @@ -142,6 +149,8 @@ def send_tns_report(data): """ Send a JSON bulk report to the Transient Name Server according to this manual: https://sandbox.wis-tns.org/sites/default/files/api/TNS_bulk_reports_manual.pdf + Returns a report ID if successful. + This ID can be used to retrieve the report from the TNS. """ tns_info = get_tns_credentials() json_data = {'api_key': tns_info['api_key'], 'data': data} @@ -157,6 +166,7 @@ def send_tns_report(data): def parse_object_from_tns_response(response_json, request): feedback_section = response_json['data']['feedback'] feedbacks = [] + iau_name = None if 'at_report' in feedback_section: feedbacks += feedback_section['at_report'] if 'classification_report' in feedback_section: @@ -180,9 +190,8 @@ def parse_object_from_tns_response(response_json, request): logger.info(log_message) messages.success(request, log_message) break - else: # this should never happen - iau_name = None - log_message = 'Problem getting response from TNS' + else: # If neither 'classification_report', nor 'at_report' were in the feedback section + log_message = 'No recognized feedback in the TNS response.' logger.error(log_message) messages.error(request, log_message) return iau_name @@ -197,6 +206,7 @@ def get_tns_report_reply(report_id, request): """ tns_info = get_tns_credentials() reply_data = {'api_key': tns_info['api_key'], 'report_id': report_id} + iau_name = None attempts = 0 # TNS Submissions return immediately with an id, which you must then check to see if the message # was processed, and if it was accepted or rejected. Here we check up to 10 times, waiting 1s @@ -218,4 +228,6 @@ def get_tns_report_reply(report_id, request): break else: raise BadTnsRequest(f"TNS submission failed with status code {response.status_code}") + if not iau_name: + raise BadTnsRequest(f"TNS submission failed to be processed within 10 seconds. The report_id = {report_id}") return iau_name diff --git a/tom_tns/views.py b/tom_tns/views.py index dd0bba3..82ea19e 100644 --- a/tom_tns/views.py +++ b/tom_tns/views.py @@ -15,6 +15,10 @@ class TNSFormView(PermissionListMixin, TemplateView): + """ + This view is used to display the TNS report forms. + The default form is the report form, but if the target name starts with AT, we switch to the classification form. + """ template_name = 'tom_tns/tns_report.html' def get_context_data(self, **kwargs): @@ -22,7 +26,7 @@ def get_context_data(self, **kwargs): target = Target.objects.get(pk=self.kwargs['pk']) context['target'] = target # We want to establish a default tab to display. - # by default, we start on report, but change to classify if the target name starts with AT + # by default, we start on report, but change to classify if the target name starts with AT. # If the target has an SN name, we warn the user that the target has likely been classified already. context['default_form'] = 'report' for name in target.names: @@ -35,6 +39,9 @@ def get_context_data(self, **kwargs): class TNSSubmitView(FormView): + """ + This View is used to submit the TNS report forms. + """ def get_success_url(self): return reverse_lazy('targets:detail', kwargs=self.kwargs) @@ -45,16 +52,23 @@ def form_invalid(self, form): return HttpResponseRedirect(self.get_success_url()) def form_valid(self, form): + """ + If the Form is successfully constructed, we generate the TNS report and submit it to the TNS. + """ try: + # Build TNS Report tns_report = form.generate_tns_report() + # Submit TNS Report report_id = send_tns_report(json.dumps(tns_report)) + # Get IAU name from Report Reply iau_name = get_tns_report_reply(report_id, self.request) - # update the target name if iau_name is not None: + # update the target name in Tom DB target = Target.objects.get(pk=self.kwargs['pk']) old_name = target.name target.name = iau_name target.save() + # Save old name as alias new_alias = TargetName(name=old_name, target=target) new_alias.save() except (requests.exceptions.HTTPError, BadTnsRequest) as e: From d5de401bb2c9dfbdda1cf53013bc449d7a76d224 Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Wed, 15 Nov 2023 16:28:30 -0800 Subject: [PATCH 11/21] handle unconfigured TNS credentials --- tom_tns/templates/tom_tns/tns_report.html | 103 ++++++++++++---------- tom_tns/tns_report.py | 14 +-- tom_tns/views.py | 4 +- 3 files changed, 66 insertions(+), 55 deletions(-) diff --git a/tom_tns/templates/tom_tns/tns_report.html b/tom_tns/templates/tom_tns/tns_report.html index 77019ab..578aced 100644 --- a/tom_tns/templates/tom_tns/tns_report.html +++ b/tom_tns/templates/tom_tns/tns_report.html @@ -4,57 +4,64 @@ {% block additional_css %} {% endblock %} {% block content %}

Submit {{ target.name }} Information to the TNS

-{% if default_form == 'supernova' %} -
Warning: This target {{target.names}} may have already been reported to and classified with the TNS
-{% endif %} -
- -
- -
- {% if default_form == 'classify' %} -
-
Warning: This target {{target.names}} may have already been reported to the TNS
- {% else %} -
- {% endif %} -
-
-

Report {{ target.name }} to the TNS

-
- {% report_to_tns %} -
+{% if not tns_configured %} +
+ TNS Credentials have not been configured! + See the TOM_TNS README for information on how to configure.
- {% if default_form == 'classify' %} -
- {% else %} -
- {% if default_form != 'supernova' %} -
Warning: This target {{target.names}} may not have been reported to the TNS yet
- {% endif %} +{% else %} + {% if default_form == 'supernova' %} +
Warning: This target {{target.names}} may have already been reported to and classified with the TNS
{% endif %} -
-
-

Classify {{ target.name }} with the TNS

-
- {% classify_with_tns %} +
+ +
+ +
+ {% if default_form == 'classify' %} +
+
Warning: This target {{target.names}} may have already been reported to the TNS
+ {% else %} +
+ {% endif %} +
+
+

Report {{ target.name }} to the TNS

+
+ {% report_to_tns %} +
+
+ {% if default_form == 'classify' %} +
+ {% else %} +
+ {% if default_form != 'supernova' %} +
Warning: This target {{target.names}} may not have been reported to the TNS yet
+ {% endif %} + {% endif %} +
+
+

Classify {{ target.name }} with the TNS

+
+ {% classify_with_tns %} +
-
+{% endif %} {% endblock %} \ No newline at end of file diff --git a/tom_tns/tns_report.py b/tom_tns/tns_report.py index 1cf4867..7d91bf4 100644 --- a/tom_tns/tns_report.py +++ b/tom_tns/tns_report.py @@ -21,11 +21,15 @@ def get_tns_credentials(): Get the TNS credentials from settings.py. This should include the bot_id, bot_name, api_key, tns_base_url, and possibly group_name. """ - tns_info = settings.BROKERS['TNS'] - # Build TNS Marker using Bot info - tns_info['marker'] = 'tns_marker' + json.dumps({'tns_id': tns_info.get('bot_id', None), - 'type': 'bot', - 'name': tns_info.get('bot_name', None)}) + try: + tns_info = settings.BROKERS['TNS'] + # Build TNS Marker using Bot info + tns_info['marker'] = 'tns_marker' + json.dumps({'tns_id': tns_info.get('bot_id', None), + 'type': 'bot', + 'name': tns_info.get('bot_name', None)}) + except (KeyError, AttributeError): + logger.error("TNS credentials not found in settings.py") + tns_info = {} return tns_info diff --git a/tom_tns/views.py b/tom_tns/views.py index 82ea19e..83171c2 100644 --- a/tom_tns/views.py +++ b/tom_tns/views.py @@ -7,8 +7,7 @@ from django.contrib import messages from guardian.mixins import PermissionListMixin -from tom_tns.tns_report import send_tns_report, get_tns_report_reply,\ - BadTnsRequest +from tom_tns.tns_report import send_tns_report, get_tns_report_reply, get_tns_credentials, BadTnsRequest from tom_targets.models import Target, TargetName import json @@ -24,6 +23,7 @@ class TNSFormView(PermissionListMixin, TemplateView): def get_context_data(self, **kwargs): context = super().get_context_data(**kwargs) target = Target.objects.get(pk=self.kwargs['pk']) + context['tns_configured'] = bool(get_tns_credentials()) context['target'] = target # We want to establish a default tab to display. # by default, we start on report, but change to classify if the target name starts with AT. From 56ae46963f877dab9965e0268f1b92ce76cdd955 Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Wed, 15 Nov 2023 16:49:17 -0800 Subject: [PATCH 12/21] update readme --- README.md | 22 ++++++++++++++++++++-- 1 file changed, 20 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 49f0c74..3d6d884 100644 --- a/README.md +++ b/README.md @@ -17,9 +17,27 @@ TOMtoolkit module for reporting transients to the TNS ] ``` - Also add your TNS credentials to your `settins.py` if they don't already exist for the TNS Broker. +3. Add your TNS credentials to your `settings.py` if they don't already exist for the TNS Broker. + + If you don't have access to a TNS Bot for your TOM, you can make one from the [TNS website](https://www.wis-tns.org/bots). + + NOTE: If you are testing on the sandbox, the sandbox is only synced every Sunday, so new bots created using the above link +won't show up until after the next update. -3. Include the tom_nonlocalizedevent URLconf in your project `urls.py`: + ```python + BROKERS = { + ... + 'TNS': { + 'bot_id': os.getenv('TNS_BOT_ID', ''), # This is the BOT ID you plan to use to submit to TNS + 'bot_name': os.getenv('TNS_BOT_NAME', ''), # This is the BOT name associated with the above ID + 'api_key': os.getenv('TNS_API_KEY', ''), # This is the API key for the associated BOT + 'tns_base_url': 'https://sandbox.wis-tns.org/api', # This is the sandbox URL. Use https://www.wis-tns.org/api for live submission. + 'group_name': os.getenv('TNS_GROUP_NAME', ''), # Optional. Include if you wish to use an affiliated Group Name. + }, + } + ``` + +5. Include the tom_nonlocalizedevent URLconf in your project `urls.py`: ```python urlpatterns = [ ... From d3aa46154910cf91a53fbaaacc1bb4e9b9b5d248 Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Thu, 16 Nov 2023 17:08:36 -0800 Subject: [PATCH 13/21] add integration points to app meta data. --- tom_tns/apps.py | 6 ++++++ tom_tns/templates/tom_tns/partials/tns_button.html | 1 + tom_tns_base/urls.py | 1 - 3 files changed, 7 insertions(+), 1 deletion(-) create mode 100644 tom_tns/templates/tom_tns/partials/tns_button.html diff --git a/tom_tns/apps.py b/tom_tns/apps.py index 83bd424..6bce368 100644 --- a/tom_tns/apps.py +++ b/tom_tns/apps.py @@ -4,3 +4,9 @@ class TomTnsConfig(AppConfig): default_auto_field = 'django.db.models.BigAutoField' name = 'tom_tns' + integration_points = {'target_detail_button': {'namespace': 'tns:report-tns', + 'title': 'TNS', + 'class': 'btn btn-info', + 'text': 'TNS', + } + } diff --git a/tom_tns/templates/tom_tns/partials/tns_button.html b/tom_tns/templates/tom_tns/partials/tns_button.html new file mode 100644 index 0000000..1aa2dfc --- /dev/null +++ b/tom_tns/templates/tom_tns/partials/tns_button.html @@ -0,0 +1 @@ + TNS \ No newline at end of file diff --git a/tom_tns_base/urls.py b/tom_tns_base/urls.py index d1e8eb0..500e3fa 100644 --- a/tom_tns_base/urls.py +++ b/tom_tns_base/urls.py @@ -17,7 +17,6 @@ from django.urls import include, path urlpatterns = [ - # path('', include('tom_common.urls')), path('tns/', include('tom_tns.urls')), path('', include('tom_common.urls')), ] From a159dcd2ff9f136f5de397b78df8ebb62d02e2f5 Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Sun, 26 Nov 2023 15:15:26 -0800 Subject: [PATCH 14/21] fix typo --- README.md | 2 +- tom_tns/__pycache__/apps.cpython-310.pyc | Bin 421 -> 560 bytes tom_tns/__pycache__/forms.cpython-310.pyc | Bin 6745 -> 6981 bytes tom_tns/__pycache__/urls.cpython-310.pyc | Bin 335 -> 555 bytes tom_tns/__pycache__/views.cpython-310.pyc | Bin 2910 -> 3036 bytes 5 files changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 3d6d884..305e053 100644 --- a/README.md +++ b/README.md @@ -37,7 +37,7 @@ won't show up until after the next update. } ``` -5. Include the tom_nonlocalizedevent URLconf in your project `urls.py`: +5. 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z-KV>cb`EyG7-CP_2;Hhq8(oBbQ+>G1=%-k43h|>s8gv!92Y!z2BFA$B;2avz@LyfG JOS|;0`)|}5;*S6T From 7b844b8dd110d7190b9a421f7d15f8c0870a9955 Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Tue, 28 Nov 2023 13:40:06 -0700 Subject: [PATCH 15/21] update readme add gitignore --- .gitignore | 121 ++++++++++++++++++++++ README.md | 2 +- tom_tns/templates/tom_tns/tns_button.html | 10 ++ 3 files changed, 132 insertions(+), 1 deletion(-) create mode 100644 .gitignore create mode 100644 tom_tns/templates/tom_tns/tns_button.html diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..4134850 --- /dev/null +++ b/.gitignore @@ -0,0 +1,121 @@ +# Default ignored files +/shelf/ +/workspace.xml + +# Scratch files +scratch/ + +# Media files +media/ +data/ + +# Cache +tmp/ + +# Development database +*.sqlite3 + +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +env/ +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +*.egg-info/ +.installed.cfg +*.egg + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*,cover +.hypothesis/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +*local_settings.py + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyCharm +.idea/ + +# emacs +*~ + +# Linting +.flake8 + +# VS Code +.vscode/ + +# PyBuilder +target/ + +# IPython Notebook +.ipynb_checkpoints + +# pyenv +.python-version + +# celery beat schedule file +celerybeat-schedule + +# dotenv +.env + +# virtualenv +.venv/ +.venv +venv/ +env/ +ENV/ + +# Spyder project settings +.spyderproject + +# Rope project settings +.ropeproject diff --git a/README.md b/README.md index 305e053..ae89011 100644 --- a/README.md +++ b/README.md @@ -13,7 +13,7 @@ TOMtoolkit module for reporting transients to the TNS ```python INSTALLED_APPS = [ ... - 'tom_nonlocalizedevents', + 'tom_tns', ] ``` diff --git a/tom_tns/templates/tom_tns/tns_button.html b/tom_tns/templates/tom_tns/tns_button.html new file mode 100644 index 0000000..566549b --- /dev/null +++ b/tom_tns/templates/tom_tns/tns_button.html @@ -0,0 +1,10 @@ + + + + + Title + + + + + \ No newline at end of file From ed434dde3c26bc3635f8cfea86de8414de642dda Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Tue, 28 Nov 2023 13:43:44 -0700 Subject: [PATCH 16/21] remove pycache --- tom_tns/__pycache__/__init__.cpython-310.pyc | Bin 141 -> 0 bytes tom_tns/__pycache__/admin.cpython-310.pyc | Bin 182 -> 0 bytes tom_tns/__pycache__/apps.cpython-310.pyc | Bin 560 -> 0 bytes tom_tns/__pycache__/forms.cpython-310.pyc | Bin 6981 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tom_tns_base/settings.py | 2 +- 6 files changed, 5 insertions(+), 15 deletions(-) delete mode 100644 tom_tns/templates/tom_tns/tns_button.html diff --git a/tom_tns/templates/tom_tns/partials/tns_button.html b/tom_tns/templates/tom_tns/partials/tns_button.html index 1aa2dfc..a2fcb7a 100644 --- a/tom_tns/templates/tom_tns/partials/tns_button.html +++ b/tom_tns/templates/tom_tns/partials/tns_button.html @@ -1 +1 @@ - TNS \ No newline at end of file + TNS diff --git a/tom_tns/templates/tom_tns/partials/tns_classify_form.html b/tom_tns/templates/tom_tns/partials/tns_classify_form.html index dec5794..53becd9 100644 --- a/tom_tns/templates/tom_tns/partials/tns_classify_form.html +++ b/tom_tns/templates/tom_tns/partials/tns_classify_form.html @@ -3,4 +3,4 @@
{% csrf_token %} {% crispy form %} -
\ No newline at end of file + diff --git a/tom_tns/templates/tom_tns/partials/tns_report_form.html b/tom_tns/templates/tom_tns/partials/tns_report_form.html index aa8e027..3867ee7 100644 --- a/tom_tns/templates/tom_tns/partials/tns_report_form.html +++ b/tom_tns/templates/tom_tns/partials/tns_report_form.html @@ -3,4 +3,4 @@
{% csrf_token %} {% crispy form %} -
\ No newline at end of file + diff --git a/tom_tns/templates/tom_tns/tns_button.html b/tom_tns/templates/tom_tns/tns_button.html deleted file mode 100644 index 566549b..0000000 --- a/tom_tns/templates/tom_tns/tns_button.html +++ /dev/null @@ -1,10 +0,0 @@ - - - - - Title - - - - - \ No newline at end of file diff --git a/tom_tns/templates/tom_tns/tns_report.html b/tom_tns/templates/tom_tns/tns_report.html index 578aced..d972d91 100644 --- a/tom_tns/templates/tom_tns/tns_report.html +++ b/tom_tns/templates/tom_tns/tns_report.html @@ -64,4 +64,4 @@

Classify {{ target.name }} with the TNS

{% endif %} -{% endblock %} \ No newline at end of file +{% endblock %} diff --git a/tom_tns_base/settings.py b/tom_tns_base/settings.py index 1f9b8dd..6d1cc9b 100644 --- a/tom_tns_base/settings.py +++ b/tom_tns_base/settings.py @@ -271,4 +271,4 @@ try: from local_settings import * # noqa except ImportError: - pass \ No newline at end of file + pass From a98fac962196c9c92647046a062af7c528664e02 Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Tue, 28 Nov 2023 14:02:00 -0700 Subject: [PATCH 18/21] move to tns_api --- tom_tns/forms.py | 3 +-- tom_tns/templatetags/tns_extras.py | 2 +- tom_tns/{tns_report.py => tns_api.py} | 0 tom_tns/views.py | 2 +- 4 files changed, 3 insertions(+), 4 deletions(-) rename tom_tns/{tns_report.py => tns_api.py} (100%) diff --git a/tom_tns/forms.py b/tom_tns/forms.py index 2ba5fbb..c9fdf94 100644 --- a/tom_tns/forms.py +++ b/tom_tns/forms.py @@ -3,8 +3,7 @@ from django import forms from django.conf import settings -from tom_tns.tns_report import get_tns_values, get_tns_credentials, get_reverse_tns_values, pre_upload_files_to_tns,\ - BadTnsRequest +from tom_tns.tns_api import get_tns_values, get_tns_credentials, get_reverse_tns_values, pre_upload_files_to_tns from crispy_forms.helper import FormHelper from crispy_forms.layout import Layout, Row, Column, Submit, HTML diff --git a/tom_tns/templatetags/tns_extras.py b/tom_tns/templatetags/tns_extras.py index ee0163c..8296203 100644 --- a/tom_tns/templatetags/tns_extras.py +++ b/tom_tns/templatetags/tns_extras.py @@ -1,7 +1,7 @@ from django import template from django.conf import settings -from tom_tns.tns_report import get_tns_values +from tom_tns.tns_api import get_tns_values from tom_tns.forms import TNSReportForm, TNSClassifyForm register = template.Library() diff --git a/tom_tns/tns_report.py b/tom_tns/tns_api.py similarity index 100% rename from tom_tns/tns_report.py rename to tom_tns/tns_api.py diff --git a/tom_tns/views.py b/tom_tns/views.py index 83171c2..ac7a673 100644 --- a/tom_tns/views.py +++ b/tom_tns/views.py @@ -7,7 +7,7 @@ from django.contrib import messages from guardian.mixins import PermissionListMixin -from tom_tns.tns_report import send_tns_report, get_tns_report_reply, get_tns_credentials, BadTnsRequest +from tom_tns.tns_api import send_tns_report, get_tns_report_reply, get_tns_credentials, BadTnsRequest from tom_targets.models import Target, TargetName import json From 6346210bbf2d97c6dd50b79c9b72ac60de096978 Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Tue, 28 Nov 2023 14:20:22 -0700 Subject: [PATCH 19/21] add dynamic versioning to poetry --- pyproject.toml | 22 +++++++++++++++++++--- 1 file changed, 19 insertions(+), 3 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 6889f7c..4a509d1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -8,10 +8,26 @@ readme = "README.md" packages = [{include = "tom_tns"}] [tool.poetry.dependencies] -python = "^3.8.1" +python = "^3.8.1,<3.12" tomtoolkit = "^2.14" +[tool.poetry-dynamic-versioning] +enable = true +vcs = "git" +style = "pep440" +# the default pattern regex makes the 'v' manditory +# this pattern modifies the default regex in order to make the 'v' optional +# ('v' becomes '[v]?' meaning a single v, [v], and ? means optional) +pattern = "(?x)^[v]?((?P\\d+)!)?(?P\\d+(\\.\\d+)*)([-._]?((?P[a-zA-Z]+)[-._]?(?P\\d+)?))?(\\+(?P.+))?$" + +# substitute version not only in pyproject.toml (which the config block above does) +# but also the __version__.py file +[tool.poetry-dynamic-versioning.substitution] + + [build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" +requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning"] +build-backend = "poetry_dynamic_versioning.backend" +# poetry_dynamic_versioning.backend is a thin wrapper around the standard build-backend = "poetry.core.masonry.api" + From d9bbafc913bca6d11f9c6c70de778ecf5248d0e7 Mon Sep 17 00:00:00 2001 From: Joey Chatelain <32683393+jchate6@users.noreply.github.com> Date: Thu, 14 Dec 2023 10:08:09 -0800 Subject: [PATCH 20/21] Update __init__.py to include version --- tom_tns/__init__.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/tom_tns/__init__.py b/tom_tns/__init__.py index e69de29..198ad6d 100644 --- a/tom_tns/__init__.py +++ b/tom_tns/__init__.py @@ -0,0 +1,2 @@ +# this is a placeholder for poetry-dynamic-versioning (see pyproject.toml) +__version__ = "0.0.0" From 608d450acace7aed7618323ae899723364a48f8a Mon Sep 17 00:00:00 2001 From: Joseph Chatelain Date: Thu, 14 Dec 2023 10:34:49 -0800 Subject: [PATCH 21/21] add versioning to form pages --- tom_tns/templates/tom_tns/tns_report.html | 2 ++ tom_tns/views.py | 2 ++ 2 files changed, 4 insertions(+) diff --git a/tom_tns/templates/tom_tns/tns_report.html b/tom_tns/templates/tom_tns/tns_report.html index d972d91..b487c23 100644 --- a/tom_tns/templates/tom_tns/tns_report.html +++ b/tom_tns/templates/tom_tns/tns_report.html @@ -63,5 +63,7 @@

Classify {{ target.name }} with the TNS

{% endif %} +
+

TOM Toolkit Module (tom_tns) version {{ version }}

{% endblock %} diff --git a/tom_tns/views.py b/tom_tns/views.py index ac7a673..7bc891c 100644 --- a/tom_tns/views.py +++ b/tom_tns/views.py @@ -7,6 +7,7 @@ from django.contrib import messages from guardian.mixins import PermissionListMixin +from tom_tns import __version__ from tom_tns.tns_api import send_tns_report, get_tns_report_reply, get_tns_credentials, BadTnsRequest from tom_targets.models import Target, TargetName @@ -25,6 +26,7 @@ def get_context_data(self, **kwargs): target = Target.objects.get(pk=self.kwargs['pk']) context['tns_configured'] = bool(get_tns_credentials()) context['target'] = target + context['version'] = __version__ # from tom_tns.__init__.py # We want to establish a default tab to display. # by default, we start on report, but change to classify if the target name starts with AT. # If the target has an SN name, we warn the user that the target has likely been classified already.