From 67f682b1189330b269c10c9084a99ae274731e16 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 25 Aug 2022 10:29:26 -0400 Subject: [PATCH 01/97] Updated version to 4.8.12. --- __version__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/__version__.py b/__version__.py index 24f6d5b956..c3d296bd19 100644 --- a/__version__.py +++ b/__version__.py @@ -5,7 +5,7 @@ # @website https://github.com/stochss/stochss # ============================================================================= -__version__ = '2.4.10' +__version__ = '2.4.12' __title__ = 'StochSS' __description__ = 'StochSS is an integrated development environment (IDE) \ for simulation of biochemical networks.' From d067e7e10ef89c01b9285e43eb71c6b6cd122178 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 25 Aug 2022 10:32:44 -0400 Subject: [PATCH 02/97] Added a handler and route to allow examples to be downloaded from the jupyterhub container. --- jupyterhub/jupyterhub_config.py | 2 ++ jupyterhub/library_example.py | 51 +++++++++++++++++++++++++++++++++ 2 files changed, 53 insertions(+) create mode 100644 jupyterhub/library_example.py diff --git a/jupyterhub/jupyterhub_config.py b/jupyterhub/jupyterhub_config.py index d8d61ff862..7b10a36abb 100644 --- a/jupyterhub/jupyterhub_config.py +++ b/jupyterhub/jupyterhub_config.py @@ -34,6 +34,7 @@ from job_presentation import ( JobAPIHandler, DownJobPresentationAPIHandler, PlotJobResultsAPIHandler, DownloadCSVAPIHandler ) +from library_example import DownloadExampleAPIHandler # Page handlers from handlers import ( HomeHandler, JobPresentationHandler, ModelPresentationHandler, NotebookPresentationHandler, @@ -95,6 +96,7 @@ (r"/stochss/present-job\/?", JobPresentationHandler), (r"/stochss/present-model\/?", ModelPresentationHandler), (r"/stochss/present-notebook\/?", NotebookPresentationHandler), + (r"/stochss/library-example/(\w+)\/?", DownloadExampleAPIHandler), (r"/stochss/multiple-plots\/?", MultiplePlotsHandler), (r"/stochss/api/file/json-data\/?", JsonFileAPIHandler), (r"/stochss/download_presentation/(\w+)/(.+)\/?", DownModelPresentationAPIHandler), diff --git a/jupyterhub/library_example.py b/jupyterhub/library_example.py new file mode 100644 index 0000000000..91603199da --- /dev/null +++ b/jupyterhub/library_example.py @@ -0,0 +1,51 @@ +''' +StochSS is a platform for simulating biochemical systems +Copyright (C) 2019-2022 StochSS developers. + +This program is free software: you can redistribute it and/or modify +it under the terms of the GNU General Public License as published by +the Free Software Foundation, either version 3 of the License, or +(at your option) any later version. + +This program is distributed in the hope that it will be useful, +but WITHOUT ANY WARRANTY; without even the implied warranty of +MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +GNU General Public License for more details. + +You should have received a copy of the GNU General Public License +along with this program. If not, see . +''' +import os +import logging +import traceback + +from jupyterhub.handlers.base import BaseHandler + +log = logging.getLogger('stochss') + +# pylint: disable=abstract-method +# pylint: disable=too-few-public-methods +class DownloadExampleAPIHandler(BaseHandler): + ''' + ################################################################################################ + Base Handler for downloading example projects from the hub container. + ################################################################################################ + ''' + async def get(self, file): + ''' + Download the example project from the hubs presentation cache. + + Attributes + ---------- + ''' + log.debug(f"Name to the file: {file}") + self.set_header('Content-Type', 'application/zip') + try: + path = os.path.join("/tmp/presentation_cache", file) + with open(path, "rb") as exmp_file: + example = exmp_file.read() + self.set_header('Content-Disposition', f'attachment; filename="{file}"') + self.write(example) + except StochSSAPIError as load_err: + report_error(self, log, load_err) + self.finish() \ No newline at end of file From 4983224e713a50748c07e9c41509e52a82284472 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 25 Aug 2022 10:33:48 -0400 Subject: [PATCH 03/97] Added example library block to the left hand menu. --- client/styles/styles.css | 16 ++++++++++++- client/templates/body.pug | 47 +++++++++++++++++++++++++++++++++++++++ 2 files changed, 62 insertions(+), 1 deletion(-) diff --git a/client/styles/styles.css b/client/styles/styles.css index 6ddb695ddc..9751a6b0ad 100644 --- a/client/styles/styles.css +++ b/client/styles/styles.css @@ -38,7 +38,7 @@ img.quickstart { } .side-navbar { - z-index: 0; + z-index: 1; } .user-logs { @@ -611,6 +611,20 @@ span.checkbox { background-color: inherit; } +.nav-drop { + color: #007bff; + text-align: match-parent; +} + +.nav-drop-content { + overflow-y: scroll; + max-height: 375px; +} + +.nav-drop-item { + padding: 0px 8px 0px 8px; +} + .dropdown { background-color: inherit; } diff --git a/client/templates/body.pug b/client/templates/body.pug index a2ab6c0467..9574aff7a0 100644 --- a/client/templates/body.pug +++ b/client/templates/body.pug @@ -50,6 +50,53 @@ body li.nav-item.ml-3 a.nav-link(href="stochss/files#file-browser-section" title="Explore your StochSS files") Files + li.nav_item + div.dropdown + button.dropdown-toggle.nav-item.nav-link.dropbtn.nav-drop#exampleLibrary( + data-hook="example-library", + data-toggle="dropdown", + aria-haspopup="true", + aria-expanded="false", + type="button" + ) Example Library + ul.nav.dropdown-menu.dropdown-content.nav-drop-content(aria-labelledby="exampleLibrary") + li.dropdown-header.py-0 Well-Mixed + li.dropdown-divider + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Brusselator.zip") Brusselator + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Degradation.zip") Degradation + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Dimerization.zip") Dimerization + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Example-SIR-Epidemic-Project.zip") Example SIR Epidemic Project + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Genetic-Toggle-Switch.zip") Genetic-Toggle-Switch + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Lotkavolterra-Oscillator.zip") Lotkavolterra-Oscillator + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Michaelis-Menten.zip") Michaelis-Menten + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Opioid.zip") Opioid + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Oregonator") Oregonator + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Schlogl") Schlogl + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Tyson-Oscillator.zip") Tyson-Oscillator + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Vilar-Oscillator.zip") Vilar-Oscillator + li.dropdown-header.pb-0 Spatial + li.dropdown-divider + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/3D-Cylinder.zip") 3D-Cylinder + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Gene-Regulatory-Network.zip") Gene-Regulatory-Network + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Spatial-Birth-Death.zip") Spatial-Birth-Death + li.dropdown-item.nav-drop-item + a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Yeast-Polarization.zip") Yeast-Polarization + li.nav-item div: a.nav-link(target="_blank" href="tree" title="Browse your files in a Jupyter interface") Jupyter Notebooks From fd91c88f2e8c99e4f7b01072014bca70acd61632 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 25 Aug 2022 11:03:51 -0400 Subject: [PATCH 04/97] Bug fixes and pylint updates. --- jupyterhub/jupyterhub_config.py | 37 +++++++++++++++++++++++++-------- jupyterhub/library_example.py | 9 ++++---- 2 files changed, 33 insertions(+), 13 deletions(-) diff --git a/jupyterhub/jupyterhub_config.py b/jupyterhub/jupyterhub_config.py index 7b10a36abb..e1df7cc6dc 100644 --- a/jupyterhub/jupyterhub_config.py +++ b/jupyterhub/jupyterhub_config.py @@ -22,8 +22,8 @@ import os.path import sys import re -import requests import json +import requests sys.path.append('/srv/jupyterhub/') # pylint: disable=wrong-import-position @@ -205,13 +205,16 @@ #--------------------------------------------------------------------------------------------------- def update_users_sets(): + """ + Update the admin, power_users, and blacklist user sets. + """ c.Authenticator.admin_users = admin = set([]) c.StochSS.power_users = power_users = set([]) c.StochSS.blacklist = blacklist = set([]) pwd = "/srv/userlist" - with open(os.path.join(pwd, 'userlist')) as f: - lines = f.read().strip().split("\n") + with open(os.path.join(pwd, 'userlist'), encoding="utf-8") as file_obj: + lines = file_obj.read().strip().split("\n") for line in lines: parts = line.split() if len(parts) > 1: @@ -275,12 +278,17 @@ def pre_spawn_hook(spawner): if elem.startswith('@'): log.info(f"Checking for domain affiliation: {elem}") if elem in spawner.user.name: - post_message_to_slack(f'User {spawner.user.name} of banned domain {elem} attempted to log into {platform}', blocks = None) + name = spawner.user.name + post_message_to_slack( + f'User {name} of banned domain {elem} attempted to log into {platform}' + ) raise Exception('User banned') else: log.info(f"Checking for user: {elem}") if elem == spawner.user.name or re.search(elem, spawner.user.name) is not None: - post_message_to_slack(f'Banned user {spawner.user.name} attempted to log into {platform}', blocks = None) + post_message_to_slack( + f'Banned user {spawner.user.name} attempted to log into {platform}' + ) raise Exception('User banned') if spawner.user.name in c.Authenticator.admin_users: @@ -289,7 +297,9 @@ def pre_spawn_hook(spawner): elif spawner.user.name in c.StochSS.power_users: log.info(f"Setting usertype for {spawner.user.name} to 'power'") user_type = 'power' - print(post_message_to_slack(f"New Login to {platform}: {spawner.user.name} user_type={user_type}")) + print(post_message_to_slack( + f"New Login to {platform}: {spawner.user.name} user_type={user_type}") + ) if user_type: spawner.mem_limit = None log.info(f'Skipping resource limitation for {user_type} user: {spawner.user.name}') @@ -359,7 +369,6 @@ def post_stop_hook(spawner): except Exception as err: message = "Exception thrown due to cpuset_cpus not being set (power user)" log.error(f"{message}\n{err}") - pass c.Spawner.pre_spawn_hook = pre_spawn_hook c.Spawner.post_stop_hook = post_stop_hook @@ -487,12 +496,22 @@ def post_stop_hook(spawner): slack_icon_emoji = ':red_circle:' slack_token = None try: - with open(".slack_bot_token",'r') as fd: - slack_token = fd.readline().strip() + with open(".slack_bot_token", 'r', encoding="utf-8") as file_obj: + slack_token = file_obj.readline().strip() except: pass def post_message_to_slack(text, blocks = None): + """ + Post messages to the StochSS Live! slack channel. + + Attributes + ---------- + text : str + Content of the message. + blocks : list + List of slack blocks + """ global slack_token, slack_channel, slack_icon_emoji, slack_user_name if slack_token is None: return diff --git a/jupyterhub/library_example.py b/jupyterhub/library_example.py index 91603199da..3de7e8f05e 100644 --- a/jupyterhub/library_example.py +++ b/jupyterhub/library_example.py @@ -17,7 +17,8 @@ ''' import os import logging -import traceback + +from presentation_error import StochSSAPIError, report_error from jupyterhub.handlers.base import BaseHandler @@ -41,11 +42,11 @@ async def get(self, file): log.debug(f"Name to the file: {file}") self.set_header('Content-Type', 'application/zip') try: - path = os.path.join("/tmp/presentation_cache", file) + path = os.path.join("/tmp/presentation_cache", file) with open(path, "rb") as exmp_file: - example = exmp_file.read() + example = exmp_file.read() self.set_header('Content-Disposition', f'attachment; filename="{file}"') self.write(example) except StochSSAPIError as load_err: report_error(self, log, load_err) - self.finish() \ No newline at end of file + self.finish() From 93e0f76c8f733cca64a16421e62262a6555c48ea Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 25 Aug 2022 12:47:36 -0400 Subject: [PATCH 05/97] Added button to hide user logs entirely. Restructured user logs section. --- client/styles/styles.css | 14 ++++++++++++-- client/templates/body.pug | 16 ++++++++++++---- client/views/main.js | 35 +++++++++++++++++++++++++++++++---- 3 files changed, 55 insertions(+), 10 deletions(-) diff --git a/client/styles/styles.css b/client/styles/styles.css index 9751a6b0ad..43e3a5a0da 100644 --- a/client/styles/styles.css +++ b/client/styles/styles.css @@ -46,7 +46,7 @@ img.quickstart { max-height: 250px; padding: 5px; margin-top: 10px; - width: auto; + width: 135%; } #user-logs { @@ -61,6 +61,10 @@ img.quickstart { height: 0px; } +[data-hook="close-user-logs"] { + display: none; +} + [role="main"] { padding-top: 20px; } @@ -91,6 +95,9 @@ img.quickstart { right: auto; width: 60%; } + [data-hook="close-user-logs"] { + display: inline-block; + } } @media (min-width: 1450px) { @@ -104,6 +111,9 @@ img.quickstart { flex: 0 0 75%; max-width: 75%; } + .user-logs { + width: 100%; + } } .inline{ @@ -762,4 +772,4 @@ span.checkbox { .hidden { display: none; -} +} \ No newline at end of file diff --git a/client/templates/body.pug b/client/templates/body.pug index 9574aff7a0..dbd981e23e 100644 --- a/client/templates/body.pug +++ b/client/templates/body.pug @@ -105,15 +105,23 @@ body div.user-logs.card.card-body - div.head + div.align-items-baseline h6.my-0.inline User Logs - button.my-0.btn.btn-outline-collapse.inline(data-hook="user-logs-collapse") + + button.btn.btn-outline-collapse.inline.my-0(data-hook="user-logs-collapse") + - button.my-0.btn.btn-light.inline(data-hook="clear-user-logs" style="float: right;") clear + button.btn.btn-light.inline.my-0(data-hook="close-user-logs" style="float: right;") - div.pl-1.overflow-auto(id="user-logs") + svg(xmlns="http://www.w3.org/2000/svg" width="16" height="16" fill="currentColor" class="bi bi-caret-down-fill" viewBox="0 0 16 16") + + path(d="M7.247 11.14 2.451 5.658C1.885 5.013 2.345 4 3.204 4h9.592a1 1 0 0 1 .753 1.659l-4.796 5.48a1 1 0 0 1-1.506 0z") + + div#user-logs-body + + div.pl-1.overflow-auto(id="user-logs") + + button.btn.btn-light.mt-2(data-hook="clear-user-logs" style="width: 100%;") Clear Logs main.col-sm-12.col-md-10.col-xl-9.col-xxl-6.body(role="main" data-hook="page-main") diff --git a/client/views/main.js b/client/views/main.js index fa49244e78..f800fe91bf 100644 --- a/client/views/main.js +++ b/client/views/main.js @@ -42,14 +42,15 @@ module.exports = View.extend({ template: bodyTemplate, autoRender: true, initialize: function () { - this.listenTo(App, 'page', this.handleNewPage); - this.homePath = window.location.pathname.startsWith("/user") ? "/hub/spawn" : "stochss/home" - + this.listenTo(App, 'page', this.handleNewPage); + this.homePath = window.location.pathname.startsWith("/user") ? "/hub/spawn" : "stochss/home" + this.ulClosed = false; }, events: { 'click [data-hook=registration-link-button]' : 'handleRegistrationLinkClick', 'click [data-hook=user-logs-collapse]' : 'collapseExpandLogs', - 'click [data-hook=clear-user-logs]' : 'clearUserLogs' + 'click [data-hook=clear-user-logs]' : 'clearUserLogs', + 'click [data-hook=close-user-logs]' : 'closeUserLogs', }, render: function () { @@ -108,6 +109,31 @@ module.exports = View.extend({ } }); }, + closeUserLogs: function (e) { + let open = ` + + + + ` + let closed = ` + + + + ` + let logs = $("#user-logs-body"); + if(logs.css("display") === "block") { + logs.css("display", "none"); + $(this.queryByHook("user-logs-collapse")).css("display", "none"); + this.ulClosed = true; + $(this.queryByHook("close-user-logs")).html(closed); + }else{ + logs.css("display", "block"); + $(this.queryByHook("user-logs-collapse")).css("display", "inline-block"); + this.ulClosed = false; + this.updateUserLogs(); + $(this.queryByHook("close-user-logs")).html(open); + } + }, collapseExpandLogs: function (e) { let logs = $("#user-logs"); let classes = logs.attr("class").split(/\s+/); @@ -128,6 +154,7 @@ module.exports = View.extend({ element.scrollTop = element.scrollHeight; }, getUserLogs: function () { + if(this.ulClosed) { return; } let self = this; let queryStr = "?logNum=" + this.logs.length; let endpoint = path.join(app.getApiPath(), "user-logs") + queryStr; From 88ae18c570381bbebb2ef3b1afda0df36bf695e5 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 25 Aug 2022 14:02:01 -0400 Subject: [PATCH 06/97] Fixed anchor based navigation on the browser page. --- client/pages/browser.js | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/client/pages/browser.js b/client/pages/browser.js index 63325b3b84..463af56413 100644 --- a/client/pages/browser.js +++ b/client/pages/browser.js @@ -50,7 +50,6 @@ let FileBrowser = PageView.extend({ }, initialize: function (attrs, options) { PageView.prototype.initialize.apply(this, arguments) - this.getProjects(); }, render: function (attrs, options) { PageView.prototype.render.apply(this, arguments) @@ -61,6 +60,7 @@ let FileBrowser = PageView.extend({ } }); app.documentSetup(); + this.getProjects(); if(app.getBasePath() === "/") { $("#presentations").css("display", "none"); }else{ @@ -147,6 +147,10 @@ let FileBrowser = PageView.extend({ PresentationView, this.queryByHook("presentation-list") ); + let href = window.location.href; + if(href.includes("#file-browser-section")) { + location.href = "stochss/files#file-browser-section"; + } }, renderProjectsView: function (projects) { if(this.projectsView) { @@ -159,6 +163,12 @@ let FileBrowser = PageView.extend({ EditProjectView, this.queryByHook("projects-view-container") ); + let href = window.location.href; + if(href.includes("#file-browser-section")) { + location.href = "stochss/files#file-browser-section"; + }else if(href.includes("#presentation-browser-section")) { + location.href = "stochss/files#presentation-browser-section"; + } }, update: function (target) { if(target === "Projects") { From ccae6bc05da856ff917dc09014aedb8a703674dc Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 25 Aug 2022 15:32:36 -0400 Subject: [PATCH 07/97] Fixed save format for models, domains, and notebooks. --- stochss/handlers/util/stochss_model.py | 6 ++-- .../handlers/util/stochss_spatial_model.py | 28 +++++++++++++++---- 2 files changed, 25 insertions(+), 9 deletions(-) diff --git a/stochss/handlers/util/stochss_model.py b/stochss/handlers/util/stochss_model.py index 9063a8d150..237992ee38 100644 --- a/stochss/handlers/util/stochss_model.py +++ b/stochss/handlers/util/stochss_model.py @@ -19,7 +19,6 @@ import os import ast import json -import numpy import string import hashlib import tempfile @@ -391,7 +390,7 @@ def convert_to_spatial(self): model = self.load() model['is_spatial'] = True if model['defaultMode'] == "dynamic": - model['defaultMode'] == "discrete-concentration" + model['defaultMode'] = "discrete-concentration" if "timestepSize" not in self.model['modelSettings'].keys(): self.model['modelSettings']['timestepSize'] = 1e-5 if "domain" not in model.keys(): @@ -542,8 +541,9 @@ def save(self, model): path = self.get_path(full=True) self.log("debug", f"Full path to the model: {path}") if os.path.exists(path): + model = json.loads(model) with open(path, 'w', encoding="utf-8") as file: - file.write(model) + json.dump(model, file, sort_keys=True, indent=4) self.log("debug", f"Saved the model: {self.get_name()}") else: message = f"Could not find the model file: {self.get_path()}" diff --git a/stochss/handlers/util/stochss_spatial_model.py b/stochss/handlers/util/stochss_spatial_model.py index 3058dd5ac1..8594597f7d 100644 --- a/stochss/handlers/util/stochss_spatial_model.py +++ b/stochss/handlers/util/stochss_spatial_model.py @@ -24,7 +24,6 @@ import tempfile import traceback -import numpy import plotly from escapism import escape from spatialpy import Model, Species, Parameter, Reaction, Domain, DomainError, BoundaryCondition, \ @@ -436,6 +435,18 @@ def __update_domain(self, domain=None): @classmethod def apply_geometry(cls, particles, d_type, center): + ''' + Set the properties of the particles found within the geometry. + + Attributes + ---------- + particles : list + List of existing particles. + d_type : str + StochSS domain type. + center : list + Vector representing the center of the geometry. + ''' def inside(point): namespace = { 'cx': center[0], 'cy': center[1], 'cz': center[2], @@ -466,7 +477,7 @@ def convert_to_model(self): s_model = self.load() s_model['is_spatial'] = False if s_model['defaultMode'] == "discrete-concentration": - s_model['defaultMode'] == "dynamic" + s_model['defaultMode'] = "dynamic" if ".wkgp" in self.path: wkgp_path = self.get_dir_name() wkgp_path, _ = self.get_unique_path(name=self.get_file(path=wkgp_path), @@ -614,7 +625,7 @@ def get_domain_plot(self, path=None, new=False, domains=None): domain = domains[0] s_domain = domains[1] fig_temp_path = "/stochss/stochss_templates/domainPlotTemplate.json" - with open(fig_temp_path, "r") as fig_temp_file: + with open(fig_temp_path, "r", encoding="utf-8") as fig_temp_file: fig_temp = json.load(fig_temp_file) trace_temp = copy.deepcopy(fig_temp['data'][0]) if len(s_domain['particles']) == 0: @@ -785,7 +796,8 @@ def load(self): if self.model is None: self.__read_model_file() self.model['name'] = self.get_name() - if "template_version" not in self.model or self.model['template_version'] != self.TEMPLATE_VERSION: + if "template_version" not in self.model or \ + self.model['template_version'] != self.TEMPLATE_VERSION: if not self.model['defaultMode']: self.model['defaultMode'] = "discrete" elif self.model['defaultMode'] == "dynamic": @@ -799,7 +811,10 @@ def load(self): if "types" not in species.keys(): species['types'] = list(range(1, len(self.model['domain']['types']))) if "diffusionConst" not in species.keys(): - diff = 0.0 if "diffusionCoeff" not in species.keys() else species['diffusionCoeff'] + if "diffusionCoeff" not in species.keys(): + diff = 0.0 + else: + diff = species['diffusionCoeff'] species['diffusionConst'] = diff for reaction in self.model['reactions']: if "odePropensity" not in reaction.keys(): @@ -854,6 +869,7 @@ def save_domain(self, domain): domain : str Domain to be saved ''' + domain = json.loads(domain) path = self.get_path(full=True) with open(path, 'w', encoding="utf-8") as file: - file.write(domain) + json.dump(domain, file, sort_keys=True, indent=4) From 1ce610697dd6a4326939245f2fb02440a2445bdb Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Mon, 29 Aug 2022 09:08:39 -0400 Subject: [PATCH 08/97] Restructured the simulation algorithm block into two rows of options. --- .../templates/simulationSettingsView.pug | 38 ++++++++++--------- 1 file changed, 20 insertions(+), 18 deletions(-) diff --git a/client/settings-view/templates/simulationSettingsView.pug b/client/settings-view/templates/simulationSettingsView.pug index c5be4b898d..6bd0292fa2 100644 --- a/client/settings-view/templates/simulationSettingsView.pug +++ b/client/settings-view/templates/simulationSettingsView.pug @@ -42,7 +42,7 @@ div#simulation-settings.card div.row.my-3 - div.col-sm-2 + div.col-sm-3 input.pl-2.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-ode", data-name="ODE") @@ -50,39 +50,41 @@ div#simulation-settings.card div.inline.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.ode) - div.col-sm-2 + div.col-sm-3 - input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-ssa", data-name="SSA") + input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-cle", data-name="CLE") - span.inline SSA + span.inline CLE - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.ssa) + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.cle) - div.col-sm-2 + div.col-sm-3 - input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-cle", data-name="CLE") + input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-hybrid-tau", data-name="Hybrid-Tau-Leaping") - span.inline CLE + span.inline Hybrid ODE/SSA - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.cle) + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.hybrid) - div.col-sm-2 + div.row - input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-tau-leaping", data-name="Tau-Leaping") + div.col-sm-3 - span.inline Tau Leaping + input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-ssa", data-name="SSA") - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.tauLeaping) + span.inline SSA - div.col-sm-2 + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.ssa) - input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-hybrid-tau", data-name="Hybrid-Tau-Leaping") + div.col-sm-3 - span.inline Hybrid ODE/SSA + input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-tau-leaping", data-name="Tau-Leaping") - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.hybrid) + span.inline Tau Leaping + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.tauLeaping) - div.col-sm-2 + div.col-sm-3 input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-automatic", data-name="Automatic") From 7f609efa66479a7038b2e63f6ba95011ab3428f3 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Mon, 29 Aug 2022 10:34:01 -0400 Subject: [PATCH 09/97] Added try catch around blacklist check. --- jupyterhub/jupyterhub_config.py | 29 ++++++++++++++++++----------- 1 file changed, 18 insertions(+), 11 deletions(-) diff --git a/jupyterhub/jupyterhub_config.py b/jupyterhub/jupyterhub_config.py index d8d61ff862..d0c077ff44 100644 --- a/jupyterhub/jupyterhub_config.py +++ b/jupyterhub/jupyterhub_config.py @@ -269,17 +269,6 @@ def pre_spawn_hook(spawner): return user_type = None platform = "live" if "live" in os.environ['OAUTH_CALLBACK'] else "staging" - for elem in c.StochSS.blacklist: - if elem.startswith('@'): - log.info(f"Checking for domain affiliation: {elem}") - if elem in spawner.user.name: - post_message_to_slack(f'User {spawner.user.name} of banned domain {elem} attempted to log into {platform}', blocks = None) - raise Exception('User banned') - else: - log.info(f"Checking for user: {elem}") - if elem == spawner.user.name or re.search(elem, spawner.user.name) is not None: - post_message_to_slack(f'Banned user {spawner.user.name} attempted to log into {platform}', blocks = None) - raise Exception('User banned') if spawner.user.name in c.Authenticator.admin_users: log.info(f"Setting usertype for {spawner.user.name} to 'admin'") @@ -287,6 +276,24 @@ def pre_spawn_hook(spawner): elif spawner.user.name in c.StochSS.power_users: log.info(f"Setting usertype for {spawner.user.name} to 'power'") user_type = 'power' + else: + for elem in c.StochSS.blacklist: + if elem.startswith('@'): + log.info(f"Checking for domain affiliation: {elem}") + if elem in spawner.user.name: + post_message_to_slack(f'User {spawner.user.name} of banned domain {elem} attempted to log into {platform}', blocks = None) + raise Exception('User banned') + else: + log.info(f"Checking for user: {elem}") + try: + if elem == spawner.user.name or re.search(elem, spawner.user.name) is not None: + post_message_to_slack(f'Banned user {spawner.user.name} attempted to log into {platform}', blocks = None) + raise Exception('User banned') + except re.error as err: + post_message_to_slack( + f'Blacklist entry {elem} on {platform} is an invalid regular expression.' + ) + print(post_message_to_slack(f"New Login to {platform}: {spawner.user.name} user_type={user_type}")) if user_type: spawner.mem_limit = None From bc240170233782c65f6ed66ccbc40d784242f840 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 30 Aug 2022 15:00:24 -0400 Subject: [PATCH 10/97] Ported the example library into its own github library. --- client/templates/body.pug | 38 +------ client/views/main.js | 9 ++ jupyterhub/jupyterhub_config.py | 2 - jupyterhub/library_example.py | 52 --------- stochss/handlers/__init__.py | 1 + stochss/handlers/file_browser.py | 22 ++++ stochss/handlers/util/stochss_base.py | 137 ++++++++++++++++++++++-- stochss/handlers/util/stochss_folder.py | 46 +++++--- 8 files changed, 196 insertions(+), 111 deletions(-) delete mode 100644 jupyterhub/library_example.py diff --git a/client/templates/body.pug b/client/templates/body.pug index 9574aff7a0..b1dfc8fc54 100644 --- a/client/templates/body.pug +++ b/client/templates/body.pug @@ -59,43 +59,7 @@ body aria-expanded="false", type="button" ) Example Library - ul.nav.dropdown-menu.dropdown-content.nav-drop-content(aria-labelledby="exampleLibrary") - li.dropdown-header.py-0 Well-Mixed - li.dropdown-divider - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Brusselator.zip") Brusselator - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Degradation.zip") Degradation - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Dimerization.zip") Dimerization - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Example-SIR-Epidemic-Project.zip") Example SIR Epidemic Project - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Genetic-Toggle-Switch.zip") Genetic-Toggle-Switch - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Lotkavolterra-Oscillator.zip") Lotkavolterra-Oscillator - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Michaelis-Menten.zip") Michaelis-Menten - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Opioid.zip") Opioid - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Oregonator") Oregonator - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Schlogl") Schlogl - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Tyson-Oscillator.zip") Tyson-Oscillator - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Vilar-Oscillator.zip") Vilar-Oscillator - li.dropdown-header.pb-0 Spatial - li.dropdown-divider - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/3D-Cylinder.zip") 3D-Cylinder - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Gene-Regulatory-Network.zip") Gene-Regulatory-Network - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Spatial-Birth-Death.zip") Spatial-Birth-Death - li.dropdown-item.nav-drop-item - a.nav-link.nav-drop-item(href="open.stochss.org?open=https://live.stochss.org/stochss/library-example/Yeast-Polarization.zip") Yeast-Polarization + ul.nav.dropdown-menu.dropdown-content.nav-drop-content(id="exampleLibraryDropdown" aria-labelledby="exampleLibrary") li.nav-item div: a.nav-link(target="_blank" href="tree" title="Browse your files in a Jupyter interface") Jupyter Notebooks diff --git a/client/views/main.js b/client/views/main.js index fa49244e78..b95056228f 100644 --- a/client/views/main.js +++ b/client/views/main.js @@ -72,6 +72,7 @@ module.exports = View.extend({ $("#presentation-nav-link").css("display", "none"); } this.setupUserLogs(); + this.getExampleLibrary(); return this; }, addNewLogBlock: function () { @@ -163,6 +164,14 @@ module.exports = View.extend({ stamp += (minutes < 10 ? '0' + minutes : minutes) + ":"; return log.replace(time, stamp); }, + getExampleLibrary: function () { + let endpoint = path.join(app.getApiPath(), "example-library"); + app.getXHR(endpoint, { + success: (err, response, body) => { + $("#exampleLibraryDropdown").html(body); + } + }); + }, handleNewPage: function (view) { this.pageSwitcher.set(view); //this.updateActiveNav(); diff --git a/jupyterhub/jupyterhub_config.py b/jupyterhub/jupyterhub_config.py index e1df7cc6dc..1c8d7cf6b5 100644 --- a/jupyterhub/jupyterhub_config.py +++ b/jupyterhub/jupyterhub_config.py @@ -34,7 +34,6 @@ from job_presentation import ( JobAPIHandler, DownJobPresentationAPIHandler, PlotJobResultsAPIHandler, DownloadCSVAPIHandler ) -from library_example import DownloadExampleAPIHandler # Page handlers from handlers import ( HomeHandler, JobPresentationHandler, ModelPresentationHandler, NotebookPresentationHandler, @@ -96,7 +95,6 @@ (r"/stochss/present-job\/?", JobPresentationHandler), (r"/stochss/present-model\/?", ModelPresentationHandler), (r"/stochss/present-notebook\/?", NotebookPresentationHandler), - (r"/stochss/library-example/(\w+)\/?", DownloadExampleAPIHandler), (r"/stochss/multiple-plots\/?", MultiplePlotsHandler), (r"/stochss/api/file/json-data\/?", JsonFileAPIHandler), (r"/stochss/download_presentation/(\w+)/(.+)\/?", DownModelPresentationAPIHandler), diff --git a/jupyterhub/library_example.py b/jupyterhub/library_example.py deleted file mode 100644 index 3de7e8f05e..0000000000 --- a/jupyterhub/library_example.py +++ /dev/null @@ -1,52 +0,0 @@ -''' -StochSS is a platform for simulating biochemical systems -Copyright (C) 2019-2022 StochSS developers. - -This program is free software: you can redistribute it and/or modify -it under the terms of the GNU General Public License as published by -the Free Software Foundation, either version 3 of the License, or -(at your option) any later version. - -This program is distributed in the hope that it will be useful, -but WITHOUT ANY WARRANTY; without even the implied warranty of -MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -GNU General Public License for more details. - -You should have received a copy of the GNU General Public License -along with this program. If not, see . -''' -import os -import logging - -from presentation_error import StochSSAPIError, report_error - -from jupyterhub.handlers.base import BaseHandler - -log = logging.getLogger('stochss') - -# pylint: disable=abstract-method -# pylint: disable=too-few-public-methods -class DownloadExampleAPIHandler(BaseHandler): - ''' - ################################################################################################ - Base Handler for downloading example projects from the hub container. - ################################################################################################ - ''' - async def get(self, file): - ''' - Download the example project from the hubs presentation cache. - - Attributes - ---------- - ''' - log.debug(f"Name to the file: {file}") - self.set_header('Content-Type', 'application/zip') - try: - path = os.path.join("/tmp/presentation_cache", file) - with open(path, "rb") as exmp_file: - example = exmp_file.read() - self.set_header('Content-Disposition', f'attachment; filename="{file}"') - self.write(example) - except StochSSAPIError as load_err: - report_error(self, log, load_err) - self.finish() diff --git a/stochss/handlers/__init__.py b/stochss/handlers/__init__.py index a5df0d851b..244ad6ed84 100644 --- a/stochss/handlers/__init__.py +++ b/stochss/handlers/__init__.py @@ -53,6 +53,7 @@ def get_page_handlers(route_start): ## API Handlers # (r'/stochss/api/user-logs\/?', UserLogsAPIHandler), + (r'/stochss/api/example-library\/?', ImportFromLibrary), (r'/stochss/api/clear-user-logs\/?', ClearUserLogsAPIHandler), (r"/stochss/api/file/browser-list\/?", ModelBrowserFileList), (r"/stochss/api/file/upload\/?", UploadFileAPIHandler), diff --git a/stochss/handlers/file_browser.py b/stochss/handlers/file_browser.py index 0dde9679a6..3afa073264 100644 --- a/stochss/handlers/file_browser.py +++ b/stochss/handlers/file_browser.py @@ -802,3 +802,25 @@ async def get(self): except StochSSAPIError as err: report_error(self, log, err) self.finish() + +class ImportFromLibrary(APIHandler): + ''' + ################################################################################################ + Handler for getting the list of examples from StochSS Example Library. + ################################################################################################ + ''' + @web.authenticated + async def get(self): + ''' + Get the list of presentations. + + Attributes + ---------- + ''' + try: + system = StochSSBase(path="example-library.json") + examples = system.load_example_library() + self.write(examples) + except StochSSAPIError as err: + report_error(self, log, err) + self.finish() diff --git a/stochss/handlers/util/stochss_base.py b/stochss/handlers/util/stochss_base.py index 53e4fac822..631c542989 100644 --- a/stochss/handlers/util/stochss_base.py +++ b/stochss/handlers/util/stochss_base.py @@ -18,10 +18,15 @@ import os import json +import time import shutil +import hashlib import datetime +import tempfile import traceback +import requests + from .stochss_errors import StochSSFileNotFoundError, StochSSPermissionsError, \ FileNotJSONFormatError @@ -46,6 +51,104 @@ def __init__(self, path): self.path = path self.logs = [] + def __build_example_dropdown(self, exm_data): + header = "
  • __KEY__
    • " + divider = "
  • " + entry_li = "
  • __ENTRY_A__
    • " + entry_a = "__NAME__" + # Well Mixed Examples + example_list = [header.replace("__KEY__", "Well-Mixed"), divider] + for entry in exm_data['Well-Mixed']: + exm_a = entry_a.replace("__ALERT__", entry['alert']) + exm_a = exm_a.replace("__OPEN_LINK__", entry['open_link']) + exm_a = exm_a.replace("__NAME__", entry['name']) + example_list.append(entry_li.replace("__ENTRY_A__", exm_a)) + # Spatial Examples + example_list.extend([header.replace("__KEY__", "Spatial"), divider]) + for entry in exm_data['Spatial']: + exm_a = entry_a.replace("__ALERT__", entry['alert']) + exm_a = exm_a.replace("__OPEN_LINK__", entry['open_link']) + exm_a = exm_a.replace("__NAME__", entry['name']) + example_list.append(entry_li.replace("__ENTRY_A__", exm_a)) + return "".join(example_list) + + def __get_entry(self, entries, name): + for entry in entries: + if entry['name'] == name: + return entry + return None + + def __get_from_remote(self): + p_path = "/stochss/.proxies.txt" + rel_path = "https://raw.githubusercontent.com/StochSS/StochSS_Example_Library/main/example_data.json" + if os.path.exists(p_path): + with open(p_path, "r", encoding="utf-8") as proxy_file: + proxy_ip = proxy_file.read().strip() + proxies = { + "https": f"https://{proxy_ip}", + "http": f"http://{proxy_ip}" + } + else: + proxies = None + + response = requests.get(rel_path, allow_redirects=True, proxies=proxies) + exm_data = json.loads(response.content.decode()) + exm_data['Download-Time'] = time.time() + return exm_data + + def __update_exm_data(self, exm_data, old_exm_data=None): + for entry in exm_data['Well-Mixed']: + entry['alert'] = " text-success" + if old_exm_data is not None: + old_entry = self.__get_entry(old_exm_data['Well-Mixed'], entry['name']) + entry['mod_time'] = old_entry['mod_time'] + entry['umd5_sum'] = old_entry['umd5_sum'] + for entry in exm_data['Spatial']: + entry['alert'] = " text-success" + if old_exm_data is not None: + old_entry = self.__get_entry(old_exm_data['Spatial'], entry['name']) + entry['mod_time'] = old_entry['mod_time'] + entry['umd5_sum'] = old_entry['umd5_sum'] + + def __update_umd5_sums(self, exm_data, files=None): + e_path = "Examples" + if files is None: + if not os.path.exists(e_path): + return + + projs = [] + non_projs = [] + for file in os.listdir(e_path): + if file.endswith("proj"): + projs.append(file) + else: + non_projs.append(file) + self.__update_umd5_sums(exm_data, files=non_projs) + self.__update_umd5_sums(exm_data, files=projs) + else: + tmp_dir = tempfile.TemporaryDirectory() + for example in files: + if example in exm_data['Names']: + entry = self.__get_entry( + exm_data['Well-Mixed'], exm_data['Name-Mappings'][example] + ) + if entry is None: + entry = self.__get_entry( + exm_data['Spatial'], exm_data['Name-Mappings'][example] + ) + # Update MD5 Sum for users example files + # if os.path.getmtime(os.path.join(e_path, example)) != entry['mod_time']: + # entry['mod_time'] = os.path.getmtime(os.path.join(e_path, example)) + # zip_path = os.path.join(tmp_dir.name, exm_data['Name-Mappings'][example]) + # shutil.make_archive(zip_path, "zip", e_path, example) + # with open(f"{zip_path}.zip", "rb") as zip_file: + # entry['umd5_sum'] = hashlib.md5(zip_file.read()).hexdigest() + # if entry['umd5_sum'] == entry['error']: + # entry['alert'] = " text-danger" + # elif entry['umd5_sum'] != entry['md5_sum']: + # entry['alert'] = " text-warning" + # else: + entry['alert'] = "" def add_presentation_name(self, file, name): ''' @@ -60,12 +163,12 @@ def add_presentation_name(self, file, name): ''' path = os.path.join(self.user_dir, ".presentations", ".presentation_names.json") if os.path.exists(path): - with open(path, "r") as names_file: + with open(path, "r", encoding="utf-8") as names_file: names = json.load(names_file) else: names = {} names[file] = name - with open(path, "w") as names_file: + with open(path, "w", encoding="utf-8") as names_file: json.dump(names, names_file) @@ -120,10 +223,10 @@ def delete_presentation_name(self, file): Name of the presentation file to remove ''' path = os.path.join(self.user_dir, ".presentations", ".presentation_names.json") - with open(path, "r") as names_file: + with open(path, "r", encoding="utf-8") as names_file: names = json.load(names_file) del names[file] - with open(path, "w") as names_file: + with open(path, "w", encoding="utf-8") as names_file: json.dump(names, names_file) @@ -173,7 +276,7 @@ def get_model_template(self, as_string=False): path = '/stochss/stochss_templates/nonSpatialModelTemplate.json' self.log("debug", f"Using model template at: {path}") try: - with open(path, 'r') as template: + with open(path, 'r', encoding="utf-8") as template: if as_string: return template.read() return json.load(template) @@ -197,7 +300,7 @@ def get_settings_template(self, as_string=False): path = '/stochss/stochss_templates/workflowSettingsTemplate.json' self.log("debug", f"Using settings template at: {path}") try: - with open(path, 'r') as template: + with open(path, 'r', encoding="utf-8") as template: if as_string: return template.read() return json.load(template) @@ -348,6 +451,28 @@ def get_unique_copy_path(self, path=None): return os.path.join(dirname, cp_file) + def load_example_library(self): + ''' + Load the example library dropdown list. + ''' + if os.path.exists(self.path): + with open(self.path, "r", encoding="utf-8") as exm_lib: + old_exm_data = json.load(exm_lib) + # Update example library if the last update was more than 24 hours old + if old_exm_data['Download-Time'] < (time.time() - (60 * 60 * 24)): + exm_data = self.__get_from_remote() + self.__update_exm_data(exm_data, old_exm_data=old_exm_data) + else: + exm_data = old_exm_data + self.__update_exm_data(exm_data) + else: + exm_data = self.__get_from_remote() + + self.__update_umd5_sums(exm_data) + with open(self.path, "w", encoding="utf-8") as data_file: + json.dump(exm_data, data_file, sort_keys=True, indent=4) + + return self.__build_example_dropdown(exm_data) def log(self, level, message): ''' diff --git a/stochss/handlers/util/stochss_folder.py b/stochss/handlers/util/stochss_folder.py index 202d77dabd..1af77c0ac1 100644 --- a/stochss/handlers/util/stochss_folder.py +++ b/stochss/handlers/util/stochss_folder.py @@ -34,7 +34,7 @@ from .stochss_model import StochSSModel from .stochss_sbml import StochSSSBMLModel from .stochss_errors import StochSSFileExistsError, StochSSFileNotFoundError, \ - StochSSPermissionsError, StochSSUnzipError + StochSSPermissionsError class StochSSFolder(StochSSBase): @@ -70,7 +70,7 @@ def __init__(self, path, new=False): def __get_file_from_link(self, remote_path): ext = remote_path.split('.').pop().split('?')[0] if os.path.exists("/stochss/.proxies.txt"): - with open("/stochss/.proxies.txt", "r") as proxy_file: + with open("/stochss/.proxies.txt", "r", encoding="utf-8") as proxy_file: proxy_ip = proxy_file.read().strip() proxies = { "https": f"https://{proxy_ip}", @@ -114,7 +114,7 @@ def __build_jstree_node(self, path, file): _path = file if self.path == "none" else os.path.join(self.path, file) ext = file.split('.').pop() if "." in file else None node = {"text":file, "type":"other", "_path":_path, "children":False} - if ext in types.keys(): + if ext in types: file_type = types[ext] node['type'] = file_type if file_type == "workflow": @@ -143,7 +143,7 @@ def __get_presentation_job_name(cls, file_path): @classmethod def __get_presentation_model_name(cls, file_path): - with open(file_path, "r") as model_file: + with open(file_path, "r", encoding="utf-8") as model_file: name = json.load(model_file)['name'] return name @@ -168,7 +168,8 @@ def __get_presentation_name(cls, names, file, file_path): def __get_names_from_file(cls, path, files): if not os.path.exists(os.path.join(path, ".presentation_names.json")): return {} - with open(os.path.join(path, ".presentation_names.json"), "r") as names_file: + path = os.path.join(path, ".presentation_names.json") + with open(path, "r", encoding="utf-8") as names_file: names = json.load(names_file) if len(names.keys()) != len(files): return {} @@ -177,7 +178,7 @@ def __get_names_from_file(cls, path, files): @classmethod def __get_presentation_notebook_name(cls, file_path): - with open(file_path, "r") as nb_file: + with open(file_path, "r", encoding="utf-8") as nb_file: file = json.load(nb_file)['file'] name = cls.get_name(cls, path=file) return name @@ -198,7 +199,10 @@ def __overwrite(self, path, ext, body): with zipfile.ZipFile(ext_path, 'r') as zip_file: members = set([name.split('/')[0] for name in zip_file.namelist()]) for name in members: - m_path = self.get_new_path(dst_path=name) + if "Examples" in path: + m_path = self.get_new_path(dst_path=os.path.join("Examples", name)) + else: + m_path = self.get_new_path(dst_path=name) if os.path.exists(m_path): if os.path.isdir(m_path): shutil.rmtree(m_path) @@ -411,7 +415,7 @@ def get_file_list(self, ext, folder=False, test=None): exclude = False if test is None else test(ext, root, file) if not exclude and '.' in file and f".{file.split('.').pop()}" in ext: path = os.path.join(root, file) if root else file - if file in domain_files.keys(): + if file in domain_files: domain_paths[domain_files[file]].append(path) else: index = str(len(domain_files.keys())) @@ -484,7 +488,8 @@ def get_presentations(cls): } presentations.append(presentation) if need_names or len(names.keys()) != len(files): - with open(os.path.join(path, ".presentation_names.json"), "w") as names_file: + path = os.path.join(path, ".presentation_names.json") + with open(path, "w", encoding="utf-8") as names_file: json.dump(names, names_file) return presentations except FileNotFoundError: @@ -578,7 +583,12 @@ def upload_from_link(self, remote_path, overwrite=False): Overwrite the existing files. ''' ext, file, body = self.__get_file_from_link(remote_path) - path = self.get_new_path(dst_path=file) + if "github.com/StochSS/StochSS_Example_Library/raw/" in remote_path: + path = self.get_new_path(dst_path=os.path.join("Examples", file)) + self.path = "Examples" + new_path = os.path.join(self.path, file) + else: + path = self.get_new_path(dst_path=file) if overwrite: self.__overwrite(path=path, ext=ext, body=body) elif os.path.exists(path): @@ -586,9 +596,10 @@ def upload_from_link(self, remote_path, overwrite=False): return {"message":message, "reason":"File Already Exists"} try: file_types = {"mdl":"model", "smdl":"model", "sbml":"sbml"} - file_type = file_types[ext] if ext in file_types.keys() else "file" + file_type = file_types[ext] if ext in file_types else "file" _ = self.upload(file_type=file_type, file=file, body=body) - new_path = self.__get_rmt_upld_path(file=file) + if "github.com/StochSS/StochSS_Example_Library/raw/" not in remote_path: + new_path = self.__get_rmt_upld_path(file=file) message = f"Successfully uploaded the file {file} to {new_path}" return {"message":message, "file_path":new_path} except StochSSFileExistsError as err: @@ -605,7 +616,10 @@ def validate_upload_link(self, remote_path): Path to the remote file ''' ext, file, body = self.__get_file_from_link(remote_path) - path = self.get_new_path(dst_path=file) + if "github.com/StochSS/StochSS_Example_Library/raw/" in remote_path: + path = self.get_new_path(dst_path=os.path.join("Examples", file)) + else: + path = self.get_new_path(dst_path=file) exists = os.path.exists(path) if ext != "zip" or exists: return exists @@ -617,7 +631,11 @@ def validate_upload_link(self, remote_path): with zipfile.ZipFile(ext_path, 'r') as zip_file: members = set([name.split('/')[0] for name in zip_file.namelist()]) for name in members: - if os.path.exists(self.get_new_path(dst_path=name)): + if "github.com/StochSS/StochSS_Example_Library/raw/" in remote_path: + mem_path = self.get_new_path(dst_path=os.path.join("Examples", name)) + else: + mem_path = self.get_new_path(dst_path=name) + if os.path.exists(mem_path): return True except zipfile.BadZipFile as err: message = "File is not a zip file" From a249cae0d4278236fc472c7895373fdb36e7a0d1 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Wed, 31 Aug 2022 13:05:41 -0400 Subject: [PATCH 11/97] Fixed hieght issue with log window. --- client/styles/styles.css | 1 + 1 file changed, 1 insertion(+) diff --git a/client/styles/styles.css b/client/styles/styles.css index 43e3a5a0da..abb6cc5663 100644 --- a/client/styles/styles.css +++ b/client/styles/styles.css @@ -55,6 +55,7 @@ img.quickstart { background-color: #000033; color: white; bottom: 0; + max-height: 225px; } #user-logs:not(.show) { From 77dd9dc676cdee8fc09924e2cc722b40c1e738f4 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 1 Sep 2022 10:30:11 -0400 Subject: [PATCH 12/97] Renamed simulation setting view files to well mixed. --- client/settings-view/settings-view.js | 2 +- .../{simulationSettingsView.pug => wellMixedSettingsView.pug} | 0 ...{simulation-settings-view.js => well-mixed-settings-view.js} | 2 +- 3 files changed, 2 insertions(+), 2 deletions(-) rename client/settings-view/templates/{simulationSettingsView.pug => wellMixedSettingsView.pug} (100%) rename client/settings-view/views/{simulation-settings-view.js => well-mixed-settings-view.js} (99%) diff --git a/client/settings-view/settings-view.js b/client/settings-view/settings-view.js index c898c8ea10..fc3a8262e8 100644 --- a/client/settings-view/settings-view.js +++ b/client/settings-view/settings-view.js @@ -22,7 +22,7 @@ let app = require('../app'); let View = require('ampersand-view'); let TimespanSettingsView = require('./views/timespan-settings-view'); let ParameterSettingsView = require('./views/parameter-settings-view'); -let SimulationSettingsView = require('./views/simulation-settings-view'); +let SimulationSettingsView = require('./views/well-mixed-settings-view'); //templates let template = require('./settingsView.pug'); diff --git a/client/settings-view/templates/simulationSettingsView.pug b/client/settings-view/templates/wellMixedSettingsView.pug similarity index 100% rename from client/settings-view/templates/simulationSettingsView.pug rename to client/settings-view/templates/wellMixedSettingsView.pug diff --git a/client/settings-view/views/simulation-settings-view.js b/client/settings-view/views/well-mixed-settings-view.js similarity index 99% rename from client/settings-view/views/simulation-settings-view.js rename to client/settings-view/views/well-mixed-settings-view.js index 171ff924db..0409cd14c5 100644 --- a/client/settings-view/views/simulation-settings-view.js +++ b/client/settings-view/views/well-mixed-settings-view.js @@ -25,7 +25,7 @@ let Tooltips = require('../../tooltips'); let InputView = require('../../views/input'); let View = require('ampersand-view'); //templates -let template = require('../templates/simulationSettingsView.pug'); +let template = require('../templates/wellMixedSettingsView.pug'); module.exports = View.extend({ template: template, From 628723d657f50983df0494e059620659e1caac38 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 1 Sep 2022 11:07:34 -0400 Subject: [PATCH 13/97] Added spatial workflow settings view. --- .../templates/spatialSettingsView.pug | 217 ++++++++++++++++++ .../views/spatial-settings-view.js | 47 ++++ 2 files changed, 264 insertions(+) create mode 100644 client/settings-view/templates/spatialSettingsView.pug create mode 100644 client/settings-view/views/spatial-settings-view.js diff --git a/client/settings-view/templates/spatialSettingsView.pug b/client/settings-view/templates/spatialSettingsView.pug new file mode 100644 index 0000000000..36ff492bec --- /dev/null +++ b/client/settings-view/templates/spatialSettingsView.pug @@ -0,0 +1,217 @@ +div#simulation-settings.card + + div.card-header.pb-0 + + h3.inline.mr-3 Simulation Settings + + div.inline.mr-3 + + ul.nav.nav-tabs.card-header-tabs(id="sim-settings-tabs") + + li.nav-item + + a.nav-link.tab.active(data-hook=this.model.elementID + "-sim-settings-edit-tab" data-toggle="tab" href="#" + this.model.elementID + "-edit-sim-settings") Edit + + li.nav-item + + a.nav-link.tab(data-hook=this.model.elementID + "-sim-settings-view-tab" data-toggle="tab" href="#" + this.model.elementID + "-view-sim-settings") View + + button.btn.btn-outline-collapse(data-toggle="collapse" data-target="#" + this.model.elementID + "collapse-settings", data-hook="collapse-settings-view") - + + div.card-body + + p.mb-0 + | Consider the following when selecting an algorithm for your job. If you would like StochSS to choose the algorithm, select Choose for me. + + ul.mb-0 + li Algorithms ODE, CLE, and Hybrid ODE/SSA work best to simulate models with a mode of Concentration. + li Algorithns SSA, Tau Leaping, and Hybrid ODE/SSA work best to simulate models with a mode of Population. + li Algorithm Hybrid ODE/SSA is required if the model contains advanced components. + + div.collapse.tab-content(class="show" id=this.model.elementID + "collapse-settings") + + div.tab-pane.active(id=this.model.elementID + "-edit-sim-settings" data-hook=this.model.elementID + "-edit-sim-settings") + + hr + + div.mx-1.head.align-items-baseline + + h4.inline Simulation Algorithm + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.algorithm) + + div.row.my-3 + + div.col-sm-3 + + input.pl-2.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-ode", data-name="ODE") + + span.inline ODE + + div.inline.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.ode) + + div.col-sm-3 + + input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-cle", data-name="CLE") + + span.inline CLE + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.cle) + + div.col-sm-3 + + input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-hybrid-tau", data-name="Hybrid-Tau-Leaping") + + span.inline Hybrid ODE/SSA + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.hybrid) + + div.row + + div.col-sm-3 + + input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-ssa", data-name="SSA") + + span.inline SSA + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.ssa) + + div.col-sm-3 + + input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-tau-leaping", data-name="Tau-Leaping") + + span.inline Tau Leaping + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.tauLeaping) + + div.col-sm-3 + + input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-automatic", data-name="Automatic") + + span.inline Choose for me + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.chooseForMe) + + div.pt-2.row.collapse.show(data-hook="settings-container") + + div.col-sm-5 + + h5.inline Deterministic Settings + + hr.mt-0 + + div.mx-1.row.head.align-items-baseline + + div.col-sm-6 + + h6.inline Relative Tolerance + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.rtol) + + div.col-sm-6 + + h6.inline Absolute Tolerance + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.atol) + + div.row.my-3 + + div.col-sm-6 + + div.pl-2(data-hook="relative-tolerance") + + div.col-sm-6(data-hook="absolute-tolerance") + + div.col-sm-7 + + h5.inline Stochastic Settings + + hr.mt-0 + + div.mx-1.row.head.align-items-baseline + + dvi.col-sm-4 + + h6.inline Trajectories + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.realizations) + + dvi.col-sm-4 + + h6.inline Seed + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.seed) + + dvi.col-sm-4 + + h6.inline Tau Tolerance + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.ttol) + + div.row.my-3 + + div.col-sm-4(data-hook="trajectories") + + div.col-sm-4(data-hook="seed") + + div.col-sm-4(data-hook="tau-tolerance") + + div.tab-pane(id=this.model.elementID + "-view-sim-settings" data-hook=this.model.elementID + "-view-sim-settings") + + hr + + div + + h6.inline.pr-2 Simulation Algorithm: + + div.inline(data-hook="view-algorithm") + + div(data-hook="view-deterministic-settings") + + hr + + h5 Deterministic Settings + + hr + + div.row + + div.col-sm-6 + + h6.inline.pr-2 Relative Tolerance: + + div.inline(data-hook="view-r-tol")=this.model.relativeTol + + div.col-sm-6 + + h6.inline.pr-2 Absolute Tolerance: + + div.inline(data-hook="view-a-tol")=this.model.absoluteTol + + div(data-hook="view-stochastic-settings") + + hr + + h5 Stochastic Settings + + hr + + div.row + + div.col-sm-4 + + h6.inline.pr-2 Trajectories: + + div.inline(data-hook="view-realizations")=this.model.realizations + + div.col-sm-4 + + h6.inline.pr-2 Seed: + + div.inline(data-hook="view-seed")=this.model.seed + + div.col-sm-4(data-hook="view-tau-tolerance") + + h6.inline.pr-2 Tau Tolerance: + + div.inline(data-hook="view-tau-tol")=this.model.tauTol diff --git a/client/settings-view/views/spatial-settings-view.js b/client/settings-view/views/spatial-settings-view.js new file mode 100644 index 0000000000..04bc6feaa1 --- /dev/null +++ b/client/settings-view/views/spatial-settings-view.js @@ -0,0 +1,47 @@ +/* +StochSS is a platform for simulating biochemical systems +Copyright (C) 2019-2022 StochSS developers. + +This program is free software: you can redistribute it and/or modify +it under the terms of the GNU General Public License as published by +the Free Software Foundation, either version 3 of the License, or +(at your option) any later version. + +This program is distributed in the hope that it will be useful, +but WITHOUT ANY WARRANTY; without even the implied warranty of +MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +GNU General Public License for more details. + +You should have received a copy of the GNU General Public License +along with this program. If not, see . +*/ + +module.exports = View.extend({ + template: template, + events: { + }, + initialize: function (attrs, options) { + View.prototype.initialize.apply(this, arguments); + this.readOnly = attrs.readOnly ? attrs.readOnly : false; + this.tooltips = Tooltips.simulationSettings; + this.algorithm = this.model.isAutomatic ? "The algorithm was chosen based on your model." : this.model.algorithm; + }, + render: function () { + View.prototype.render.apply(this, arguments); + if(this.readOnly) { + $(this.queryByHook(this.model.elementID + '-sim-settings-edit-tab')).addClass("disabled"); + $(".nav .disabled>a").on("click", function(e) { + e.preventDefault(); + return false; + }); + $(this.queryByHook(this.model.elementID + '-sim-settings-view-tab')).tab('show'); + $(this.queryByHook(this.model.elementID + '-edit-sim-settings')).removeClass('active'); + $(this.queryByHook(this.model.elementID + '-view-sim-settings')).addClass('active'); + }else { + app.tooltipSetup(); + } + this.updateViewer(); + }, + updateViewer: function () { + } +}); \ No newline at end of file From 6eddbf01cf6dbc12be66189abdc0434722fb3b18 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 1 Sep 2022 14:52:12 -0400 Subject: [PATCH 14/97] Enabled ensemble simulations for spatial models. --- client/app.js | 21 ++++++++++------ client/file-config.js | 7 +----- client/pages/model-editor.js | 14 +++++------ client/project-config.js | 7 +----- client/templates/includes/modelListing.pug | 4 ++- .../includes/workflowGroupListing.pug | 4 ++- client/views/jstree-view.js | 25 ++++++++++++++----- client/views/model-listing.js | 3 ++- client/views/workflow-group-listing.js | 3 ++- stochss/handlers/util/stochss_workflow.py | 2 ++ 10 files changed, 53 insertions(+), 37 deletions(-) diff --git a/client/app.js b/client/app.js index 786121e86f..64e8533a9a 100644 --- a/client/app.js +++ b/client/app.js @@ -167,21 +167,26 @@ let newWorkflow = (parent, mdlPath, isSpatial, type) => { if(document.querySelector('#newWorkflowModal')) { document.querySelector('#newWorkflowModal').remove() } + let typeCodes = { + "Ensemble Simulation": "_ES", + "Spatial Ensemble Simulation": "_SES", + "Parameter Sweep": "_PS" + } let self = parent; let ext = isSpatial ? /.smdl/g : /.mdl/g - let typeCode = type === "Ensemble Simulation" ? "_ES" : "_PS"; + let typeCode = typeCodes[type]; let name = mdlPath.split('/').pop().replace(ext, typeCode) let modal = $(modals.createWorkflowHtml(name, type)).modal(); let okBtn = document.querySelector('#newWorkflowModal .ok-model-btn'); let input = document.querySelector('#newWorkflowModal #workflowNameInput'); okBtn.disabled = false; - input.addEventListener("keyup", function (event) { + input.addEventListener("keyup", (event) => { if(event.keyCode === 13){ event.preventDefault(); okBtn.click(); } }); - input.addEventListener("input", function (e) { + input.addEventListener("input", (e) => { let endErrMsg = document.querySelector('#newWorkflowModal #workflowNameInputEndCharError') let charErrMsg = document.querySelector('#newWorkflowModal #workflowNameInputSpecCharError') let error = validateName(input.value) @@ -189,19 +194,19 @@ let newWorkflow = (parent, mdlPath, isSpatial, type) => { charErrMsg.style.display = error === "both" || error === "special" ? "block" : "none" endErrMsg.style.display = error === "both" || error === "forward" ? "block" : "none" }); - okBtn.addEventListener('click', function (e) { + okBtn.addEventListener('click', (e) => { modal.modal("hide"); - let wkflFile = input.value.trim() + ".wkfl"; + let wkflFile = `${input.value.trim()}.wkfl`; if(mdlPath.includes(".proj") && !mdlPath.includes(".wkgp")){ var wkflPath = path.join(path.dirname(mdlPath), "WorkflowGroup1.wkgp", wkflFile); }else{ var wkflPath = path.join(path.dirname(mdlPath), wkflFile); } - let queryString = "?path=" + wkflPath + "&model=" + mdlPath + "&type=" + type; + let queryString = `?path=${wkflPath}&model=${mdlPath}&type=${type}`; let endpoint = path.join(getApiPath(), "workflow/new") + queryString; getXHR(endpoint, { - success: function (err, response, body) { - window.location.href = path.join(getBasePath(), "stochss/workflow/edit") + "?path=" + body.path; + success: (err, response, body) => { + window.location.href = `${path.join(getBasePath(), "stochss/workflow/edit")}?path=${body.path}`; } }); }); diff --git a/client/file-config.js b/client/file-config.js index bff5de6d47..b1541e2e74 100644 --- a/client/file-config.js +++ b/client/file-config.js @@ -225,12 +225,7 @@ let getSpatialModelContext = (view, node) => { let downloadOptions = {dataType: "json", identifier: "file/json-data"}; return { edit: view.getEditModelContext(node), - newWorkflow: view.buildContextWithSubmenus({ - label: "New Workflow", - submenu: { - jupyterNotebook: view.getNotebookNewWorkflowContext(node) - } - }), + newWorkflow: view.getSpatialNewWorkflowContext(node), convert: view.getSmdlConvertContext(node, "spatial/to-model"), download: view.getDownloadContext(node, downloadOptions), rename: view.getRenameContext(node), diff --git a/client/pages/model-editor.js b/client/pages/model-editor.js index 63e41c697b..4135cd5123 100644 --- a/client/pages/model-editor.js +++ b/client/pages/model-editor.js @@ -259,13 +259,14 @@ let ModelEditor = PageView.extend({ this.runPreview(); }else if(e.target.dataset.type === "notebook"){ this.notebookWorkflow(e); - }else if(!this.model.is_spatial) { + }else if (e.target.dataset.type === "ensemble") { + let type = this.model.is_spatial ? "Spatial Ensemble Simulation" : "Ensemble Simulation" this.saveModel(() => { - if(e.target.dataset.type === "ensemble") { - app.newWorkflow(this, this.model.directory, this.model.is_spatial, "Ensemble Simulation"); - }else if(e.target.dataset.type === "psweep") { - app.newWorkflow(this, this.model.directory, this.model.is_spatial, "Parameter Sweep"); - } + app.newWorkflow(this, this.model.directory, this.model.is_spatial, type); + }); + }else if(!this.model.is_spatial && e.target.dataset.type === "psweep") { + this.saveModel(() => { + app.newWorkflow(this, this.model.directory, this.model.is_spatial, "Parameter Sweep"); }); } } @@ -349,7 +350,6 @@ let ModelEditor = PageView.extend({ if(this.model.is_spatial) { $(this.queryByHook("toggle-preview-domain")).css("display", "inline-block"); this.openDomainPlot(); - $(this.queryByHook("stochss-es")).addClass("disabled"); $(this.queryByHook("stochss-ps")).addClass("disabled"); } if(app.getBasePath() === "/") { diff --git a/client/project-config.js b/client/project-config.js index c99c33c986..3bfc24ab2c 100644 --- a/client/project-config.js +++ b/client/project-config.js @@ -214,12 +214,7 @@ let getSpatialModelContext = (view, node) => { return { edit: view.getEditModelContext(node), extract: getExtractContext(view, node, "model"), - newWorkflow: view.buildContextWithSubmenus({ - label: "New Workflow", - submenu: { - jupyterNotebook: view.getNotebookNewWorkflowContext(node) - } - }), + newWorkflow: view.getSpatialNewWorkflowContext(node), convert: view.getSmdlConvertContext(node, "spatial/to-model"), download: view.getDownloadContext(node, downloadOptions), rename: view.getRenameContext(node), diff --git a/client/templates/includes/modelListing.pug b/client/templates/includes/modelListing.pug index 418f283396..c369e20929 100644 --- a/client/templates/includes/modelListing.pug +++ b/client/templates/includes/modelListing.pug @@ -18,9 +18,11 @@ div ) New Workflow Using Model ul.dropdown-menu(aria-labelledby=this.model.elementID + "-workflow-btn") + li.dropdown-item(id=this.model.elementID + "-ensemble-simulation") Ensemble Simulation + if(!this.model.is_spatial) - li.dropdown-item(id=this.model.elementID + "-ensemble-simulation") Ensemble Simulation li.dropdown-item(id=this.model.elementID + "-parameter-sweep") Parameter Sweep + li.dropdown-item a.btn(id=this.model.elementID + "-jupyter-notebook" data-hook=this.model.elementID + "-jupyter-notebook" style="padding: 0;") Jupyter Notebook diff --git a/client/templates/includes/workflowGroupListing.pug b/client/templates/includes/workflowGroupListing.pug index d318609c52..e55978c294 100644 --- a/client/templates/includes/workflowGroupListing.pug +++ b/client/templates/includes/workflowGroupListing.pug @@ -18,9 +18,11 @@ div ) New Workflow Using Model ul.dropdown-menu(aria-labelledby=this.model.elementID + "-workflow-btn") + li.dropdown-item(id=this.model.elementID + "-ensemble-simulation") Ensemble Simulation + if(!this.model.model.is_spatial) - li.dropdown-item(id=this.model.elementID + "-ensemble-simulation") Ensemble Simulation li.dropdown-item(id=this.model.elementID + "-parameter-sweep") Parameter Sweep + li.dropdown-item a.btn(id=this.model.elementID + "-jupyter-notebook" data-hook=this.model.elementID + "-jupyter-notebook" style="padding: 0;") Jupyter Notebook diff --git a/client/views/jstree-view.js b/client/views/jstree-view.js index 529c7ebd87..ad1fab90e4 100644 --- a/client/views/jstree-view.js +++ b/client/views/jstree-view.js @@ -488,12 +488,7 @@ module.exports = View.extend({ return this.buildContextWithSubmenus({ label: "New Workflow", submenu: { - ensembleSimulation: this.buildContextBase({ - label: "Ensemble Simulation", - action: (data) => { - this.newWorkflow(node, "Ensemble Simulation"); - } - }), + ensembleSimulation: this.getEnsembleNewWorkflowContext(node), parameterSweep: this.buildContextBase({ label: "Parameter Sweep", action: (data) => { @@ -623,6 +618,15 @@ module.exports = View.extend({ } }); }, + getEnsembleNewWorkflowContext: function (node) { + return this.buildContextBase({ + label: "Ensemble Simulation", + action: (data) => { + let type = node.original.type === "spatial" ? "Spatial Ensemble Simulation" : "Ensemble Simulation"; + this.newWorkflow(node, type); + } + }); + }, getNotebookNewWorkflowContext: function (node) { return this.buildContextBase({ label: "Jupyter Notebook", @@ -685,6 +689,15 @@ module.exports = View.extend({ } }); }, + getSpatialNewWorkflowContext: function (node) { + return this.buildContextWithSubmenus({ + label: "New Workflow", + submenu: { + ensembleSimulation: this.getEnsembleNewWorkflowContext(node), + jupyterNotebook: this.getNotebookNewWorkflowContext(node) + } + }); + }, getTimeStamp: function () { let date = new Date(); let year = date.getFullYear(); diff --git a/client/views/model-listing.js b/client/views/model-listing.js index 84384ac2b5..100749d3c3 100644 --- a/client/views/model-listing.js +++ b/client/views/model-listing.js @@ -70,7 +70,8 @@ module.exports = View.extend({ document.querySelector("#" + this.model.elementID + "-annotation").focus(); }, handleEnsembleSimulationClick: function (e) { - this.newWorkflow("Ensemble Simulation") + let type = this.model.is_spatial ? "Spatial Ensemble Simulation" : "Ensemble Simulation"; + this.newWorkflow(type); }, handleParameterSweepClick: function (e) { this.newWorkflow("Parameter Sweep") diff --git a/client/views/workflow-group-listing.js b/client/views/workflow-group-listing.js index 38b704356c..4dcb3d6c26 100644 --- a/client/views/workflow-group-listing.js +++ b/client/views/workflow-group-listing.js @@ -55,7 +55,8 @@ module.exports = View.extend({ app.changeCollapseButtonText(this, e); }, handleEnsembleSimulationClick: function (e) { - this.newWorkflow("Ensemble Simulation") + let type = this.model.model.is_spatial ? "Spatial Ensemble Simulation" : "Ensemble Simulation"; + this.newWorkflow(type); }, handleParameterSweepClick: function (e) { this.newWorkflow("Parameter Sweep") diff --git a/stochss/handlers/util/stochss_workflow.py b/stochss/handlers/util/stochss_workflow.py index e895456252..a215cf117a 100644 --- a/stochss/handlers/util/stochss_workflow.py +++ b/stochss/handlers/util/stochss_workflow.py @@ -62,6 +62,8 @@ def __init__(self, path, new=False, mdl_path=None, wkfl_type=None): settings = self.get_settings_template() if wkfl_type == "Parameter Sweep": settings['simulationSettings']['realizations'] = 20 + if wkfl_type == "Spatial Ensemble Simulation": + settings['simulationSettings']['realizations'] = 1 if os.path.exists(mdl_path): with open(mdl_path, "r") as mdl_file: timespan_settings = json.load(mdl_file)['modelSettings'] From 8d457093b6c5227210ef9e67ea3edb6aadcd9d31 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 1 Sep 2022 16:01:06 -0400 Subject: [PATCH 15/97] Upadted timespan settings view to support spatial workflows. --- client/pages/model-editor.js | 3 ++- client/settings-view/settings-view.js | 9 ++++++--- client/settings-view/templates/timespanSettingsView.pug | 8 ++++---- client/settings-view/views/timespan-settings-view.js | 1 + 4 files changed, 13 insertions(+), 8 deletions(-) diff --git a/client/pages/model-editor.js b/client/pages/model-editor.js index 4135cd5123..b6ea2943ad 100644 --- a/client/pages/model-editor.js +++ b/client/pages/model-editor.js @@ -358,7 +358,8 @@ let ModelEditor = PageView.extend({ this.renderModelView(); this.modelSettings = new TimespanSettingsView({ parent: this, - model: this.model.modelSettings + model: this.model.modelSettings, + isSpatial: this.model.is_spatial }); app.registerRenderSubview(this, this.modelSettings, 'model-settings-container'); if(validate && !this.model.valid) { diff --git a/client/settings-view/settings-view.js b/client/settings-view/settings-view.js index fc3a8262e8..00b37ea448 100644 --- a/client/settings-view/settings-view.js +++ b/client/settings-view/settings-view.js @@ -22,7 +22,8 @@ let app = require('../app'); let View = require('ampersand-view'); let TimespanSettingsView = require('./views/timespan-settings-view'); let ParameterSettingsView = require('./views/parameter-settings-view'); -let SimulationSettingsView = require('./views/well-mixed-settings-view'); +let WellMixedSettingsView = require('./views/well-mixed-settings-view'); +let SpatialSettingsView = require('./views/spatial-settings-view'); //templates let template = require('./settingsView.pug'); @@ -60,7 +61,8 @@ module.exports = View.extend({ if(this.simulationSettingsView) { this.simulationSettingsView.remove(); } - this.simulationSettingsView = new SimulationSettingsView({ + let settingsView = this.type.includes("Spatial") ? SpatialSettingsView : WellMixedSettingsView; + this.simulationSettingsView = new settingsView({ model: this.model.simulationSettings, readOnly: this.readOnly }); @@ -72,7 +74,8 @@ module.exports = View.extend({ } this.timespanSettingsView = new TimespanSettingsView({ model: this.model.timespanSettings, - readOnly: this.readOnly + readOnly: this.readOnly, + isSpatial: this.type === "Spatial Ensemble Simulation" }); app.registerRenderSubview(this, this.timespanSettingsView, "timespan-settings-container"); } diff --git a/client/settings-view/templates/timespanSettingsView.pug b/client/settings-view/templates/timespanSettingsView.pug index 562bea9559..8947e27f52 100644 --- a/client/settings-view/templates/timespanSettingsView.pug +++ b/client/settings-view/templates/timespanSettingsView.pug @@ -43,7 +43,7 @@ div#preview-settings.card div.col-sm-6 - if this.parent.model.is_spatial + if this.isSpatial h6 Timestep Size div.mx-1.my-3.row @@ -54,7 +54,7 @@ div#preview-settings.card div.col-sm-6 - if this.parent.model.is_spatial + if this.isSpatial div div.row @@ -98,7 +98,7 @@ div#preview-settings.card div.col-sm-3 - if this.parent.model.is_spatial + if this.isSpatial h6 Timestep Size div.mx-1.my-3.row @@ -107,7 +107,7 @@ div#preview-settings.card div.col-sm-3(data-hook="view-time-step")=this.model.timeStep - if this.parent.model.is_spatial + if this.isSpatial div.col-sm-6(data-hook="view-timestep-size")=this.model.timestepSize diff --git a/client/settings-view/views/timespan-settings-view.js b/client/settings-view/views/timespan-settings-view.js index 09cdc6784f..f8e0de13f3 100644 --- a/client/settings-view/views/timespan-settings-view.js +++ b/client/settings-view/views/timespan-settings-view.js @@ -40,6 +40,7 @@ module.exports = View.extend({ View.prototype.initialize.apply(this, arguments); this.readOnly = attrs.readOnly ? attrs.readOnly : false; this.tooltips = Tooltips.modelSettings + this.isSpatial = attrs.isSpatial; let tssValues = {1e-5: 5, 1e-4: 4, 1e-3: 3, 1e-2: 2, 1e-1: 1, 1: 0} this.tssValue = tssValues[this.model.timestepSize] }, From 1bedc1554e2511ac003c322a01acfa57d8d4b683 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 2 Sep 2022 08:17:46 -0400 Subject: [PATCH 16/97] Made the example library file hidden. --- stochss/handlers/file_browser.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/stochss/handlers/file_browser.py b/stochss/handlers/file_browser.py index 3afa073264..ae57d440fd 100644 --- a/stochss/handlers/file_browser.py +++ b/stochss/handlers/file_browser.py @@ -818,7 +818,7 @@ async def get(self): ---------- ''' try: - system = StochSSBase(path="example-library.json") + system = StochSSBase(path=".example-library.json") examples = system.load_example_library() self.write(examples) except StochSSAPIError as err: From 7f4eb6795fec05f8978f88e0e34a72c5446f1a09 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 2 Sep 2022 09:46:33 -0400 Subject: [PATCH 17/97] Updated the simulation settings for spatial simulations. --- .../templates/spatialSettingsView.pug | 194 +++--------------- .../views/spatial-settings-view.js | 55 ++++- 2 files changed, 76 insertions(+), 173 deletions(-) diff --git a/client/settings-view/templates/spatialSettingsView.pug b/client/settings-view/templates/spatialSettingsView.pug index 36ff492bec..6dd29306db 100644 --- a/client/settings-view/templates/spatialSettingsView.pug +++ b/client/settings-view/templates/spatialSettingsView.pug @@ -18,200 +18,52 @@ div#simulation-settings.card button.btn.btn-outline-collapse(data-toggle="collapse" data-target="#" + this.model.elementID + "collapse-settings", data-hook="collapse-settings-view") - - div.card-body + div.collapse(class="show" id=this.model.elementID + "collapse-settings") - p.mb-0 - | Consider the following when selecting an algorithm for your job. If you would like StochSS to choose the algorithm, select Choose for me. - - ul.mb-0 - li Algorithms ODE, CLE, and Hybrid ODE/SSA work best to simulate models with a mode of Concentration. - li Algorithns SSA, Tau Leaping, and Hybrid ODE/SSA work best to simulate models with a mode of Population. - li Algorithm Hybrid ODE/SSA is required if the model contains advanced components. - - div.collapse.tab-content(class="show" id=this.model.elementID + "collapse-settings") + div.card-body.tab-content div.tab-pane.active(id=this.model.elementID + "-edit-sim-settings" data-hook=this.model.elementID + "-edit-sim-settings") - hr - - div.mx-1.head.align-items-baseline - - h4.inline Simulation Algorithm - - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.algorithm) - - div.row.my-3 - - div.col-sm-3 - - input.pl-2.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-ode", data-name="ODE") - - span.inline ODE - - div.inline.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.ode) - - div.col-sm-3 - - input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-cle", data-name="CLE") - - span.inline CLE - - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.cle) - - div.col-sm-3 - - input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-hybrid-tau", data-name="Hybrid-Tau-Leaping") - - span.inline Hybrid ODE/SSA - - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.hybrid) - - div.row - - div.col-sm-3 - - input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-ssa", data-name="SSA") - - span.inline SSA - - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.ssa) - - div.col-sm-3 - - input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-tau-leaping", data-name="Tau-Leaping") - - span.inline Tau Leaping - - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.tauLeaping) - - div.col-sm-3 - - input.mr-2.inline(type="radio", name="simAlgorithm", data-hook="select-automatic", data-name="Automatic") - - span.inline Choose for me - - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.chooseForMe) - - div.pt-2.row.collapse.show(data-hook="settings-container") - - div.col-sm-5 - - h5.inline Deterministic Settings - - hr.mt-0 - - div.mx-1.row.head.align-items-baseline - - div.col-sm-6 + h5.inline Stochastic Settings - h6.inline Relative Tolerance + hr.mt-0 - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.rtol) + div.mx-1.row.head.align-items-baseline - div.col-sm-6 + dvi.col-sm-6 - h6.inline Absolute Tolerance + h6.inline Trajectories - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.atol) + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.realizations) - div.row.my-3 + dvi.col-sm-6 - div.col-sm-6 + h6.inline Seed - div.pl-2(data-hook="relative-tolerance") + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.seed) - div.col-sm-6(data-hook="absolute-tolerance") - - div.col-sm-7 - - h5.inline Stochastic Settings - - hr.mt-0 - - div.mx-1.row.head.align-items-baseline - - dvi.col-sm-4 - - h6.inline Trajectories - - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.realizations) - - dvi.col-sm-4 - - h6.inline Seed - - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.seed) - - dvi.col-sm-4 - - h6.inline Tau Tolerance - - div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.ttol) - - div.row.my-3 - - div.col-sm-4(data-hook="trajectories") + div.row.my-3 - div.col-sm-4(data-hook="seed") + div.col-sm-6(data-hook="trajectories") - div.col-sm-4(data-hook="tau-tolerance") + div.col-sm-6(data-hook="seed") div.tab-pane(id=this.model.elementID + "-view-sim-settings" data-hook=this.model.elementID + "-view-sim-settings") - hr - - div - - h6.inline.pr-2 Simulation Algorithm: - - div.inline(data-hook="view-algorithm") + h5 Stochastic Settings - div(data-hook="view-deterministic-settings") - - hr - - h5 Deterministic Settings - - hr - - div.row - - div.col-sm-6 - - h6.inline.pr-2 Relative Tolerance: - - div.inline(data-hook="view-r-tol")=this.model.relativeTol - - div.col-sm-6 - - h6.inline.pr-2 Absolute Tolerance: - - div.inline(data-hook="view-a-tol")=this.model.absoluteTol - - div(data-hook="view-stochastic-settings") - - hr - - h5 Stochastic Settings - - hr - - div.row - - div.col-sm-4 - - h6.inline.pr-2 Trajectories: + hr - div.inline(data-hook="view-realizations")=this.model.realizations + div.row - div.col-sm-4 + div.col-sm-6 - h6.inline.pr-2 Seed: + h6.inline.pr-2 Trajectories: - div.inline(data-hook="view-seed")=this.model.seed + div.inline(data-hook="view-realizations")=this.model.realizations - div.col-sm-4(data-hook="view-tau-tolerance") + div.col-sm-6 - h6.inline.pr-2 Tau Tolerance: + h6.inline.pr-2 Seed: - div.inline(data-hook="view-tau-tol")=this.model.tauTol + div.inline(data-hook="view-seed")=this.model.seed diff --git a/client/settings-view/views/spatial-settings-view.js b/client/settings-view/views/spatial-settings-view.js index 04bc6feaa1..7850abaeff 100644 --- a/client/settings-view/views/spatial-settings-view.js +++ b/client/settings-view/views/spatial-settings-view.js @@ -16,9 +16,23 @@ You should have received a copy of the GNU General Public License along with this program. If not, see . */ +let $ = require('jquery'); +//support files +let app = require('../../app'); +let tests = require('../../views/tests'); +let Tooltips = require('../../tooltips'); +//views +let InputView = require('../../views/input'); +let View = require('ampersand-view'); +//templates +let template = require('../templates/spatialSettingsView.pug'); + module.exports = View.extend({ template: template, events: { + 'change [data-hook=trajectories]' : 'updateViewTraj', + 'change [data-hook=seed]' : 'updateViewSeed', + 'click [data-hook=collapse-settings-view]' : 'changeCollapseButtonText' }, initialize: function (attrs, options) { View.prototype.initialize.apply(this, arguments); @@ -40,8 +54,45 @@ module.exports = View.extend({ }else { app.tooltipSetup(); } - this.updateViewer(); }, - updateViewer: function () { + changeCollapseButtonText: function (e) { + app.changeCollapseButtonText(this, e); + }, + update: function (e) {}, + updateValid: function (e) {}, + updateViewSeed: function (e) { + $(this.queryByHook("view-seed")).html(this.model.seed); + }, + updateViewTraj: function (e) { + $(this.queryByHook("view-realizations")).html(this.model.realizations); + }, + subviews: { + inputSeed: { + hook: 'seed', + prepareView: function () { + return new InputView({ + parent: this, + required: true, + name: 'seed', + modelKey: 'seed', + valueType: 'number', + value: this.model.seed + }); + } + }, + inputRealizations: { + hook: 'trajectories', + prepareView: function (el) { + return new InputView({ + parent: this, + required: true, + name: 'realizations', + tests: tests.valueTests, + modelKey: 'realizations', + valueType: 'number', + value: this.model.realizations + }); + } + } } }); \ No newline at end of file From bb0bc9fc2b71d72a5c96bceccc51c20af7d5d31e Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 2 Sep 2022 11:41:33 -0400 Subject: [PATCH 18/97] Added support for initializing and loading spatial jobs. --- client/pages/workflow-manager.js | 30 ++++++++++++--------- stochss/handlers/util/scripts/start_job.py | 7 ++++- stochss/handlers/util/spatial_simulation.py | 2 ++ stochss/handlers/util/stochss_job.py | 9 +++++-- 4 files changed, 32 insertions(+), 16 deletions(-) diff --git a/client/pages/workflow-manager.js b/client/pages/workflow-manager.js index 41f1a71baf..07acc47fd8 100644 --- a/client/pages/workflow-manager.js +++ b/client/pages/workflow-manager.js @@ -103,21 +103,25 @@ let WorkflowManager = PageView.extend({ }, clickStartJobHandler: function (e) { this.saving(); - let self = this; - let type = this.model.type === "Ensemble Simulation" ? "gillespy" : "parameterSweep"; - let data = {"settings": this.model.settings.toJSON(), - "mdl_path": this.model.model, - "type": type, "time_stamp": this.getTimeStamp()}; - let queryStr = "?path=" + this.model.directory + "&data=" + JSON.stringify(data); - let initEndpoint = path.join(app.getApiPath(), "workflow/init-job") + queryStr; + let types = { + "Ensemble Simulation": "gillespy", + "Parameter Sweep": "parameterSweep", + "Spatial Ensemble Simulation": "spatial" + }; + let data = { + "settings": this.model.settings.toJSON(), "mdl_path": this.model.model, + "type": types[this.model.type], "time_stamp": this.getTimeStamp() + }; + let queryStr = `?path=${this.model.directory}&data=${JSON.stringify(data)}`; + let initEndpoint = `${path.join(app.getApiPath(), "workflow/init-job")}${queryStr}`; app.getXHR(initEndpoint, { - success: function (err, response, body) { - self.saved(); - let runQuery = "?path=" + body + "&type=" + type; - let runEndpoint = path.join(app.getApiPath(), "workflow/run-job") + runQuery; + success: (err, response, body) => { + this.saved(); + let runQuery = `?path=${body}&type=${data.type}`; + let runEndpoint = `${path.join(app.getApiPath(), "workflow/run-job")}${runQuery}`; app.getXHR(runEndpoint, { - success: function (err, response, body) { - self.updateWorkflow(true); + success: (err, response, body) => { + this.updateWorkflow(true); } }); } diff --git a/stochss/handlers/util/scripts/start_job.py b/stochss/handlers/util/scripts/start_job.py index b690c47738..930b22a91b 100755 --- a/stochss/handlers/util/scripts/start_job.py +++ b/stochss/handlers/util/scripts/start_job.py @@ -30,6 +30,7 @@ sys.path.append("/stochss/stochss/") # pylint: disable=wrong-import-position sys.path.append("/stochss/stochss/handlers/") # pylint: disable=wrong-import-position from util.ensemble_simulation import EnsembleSimulation +from util.spatial_simulation import SpatialSimulation from util.parameter_sweep import ParameterSweep from handlers.log import init_log @@ -105,7 +106,11 @@ def setup_logger(log_path): if __name__ == "__main__": args = get_parsed_args() - jobs = {"gillespy":EnsembleSimulation, "parameterSweep":ParameterSweep} + jobs = { + "gillespy":EnsembleSimulation, + "spatial": SpatialSimulation, + "parameterSweep":ParameterSweep + } try: os.chdir(args.path) job = jobs[args.type](path=args.path) diff --git a/stochss/handlers/util/spatial_simulation.py b/stochss/handlers/util/spatial_simulation.py index 5e5e9b41b6..f5ca6fa6ad 100644 --- a/stochss/handlers/util/spatial_simulation.py +++ b/stochss/handlers/util/spatial_simulation.py @@ -88,4 +88,6 @@ def run(self, preview=False, verbose=False): plot["layout"]["autosize"] = True plot["config"] = {"responsive": True, "displayModeBar": True} return plot + else: + print("Running spatial simulation") return None diff --git a/stochss/handlers/util/stochss_job.py b/stochss/handlers/util/stochss_job.py index 686149b791..4cd70e5045 100644 --- a/stochss/handlers/util/stochss_job.py +++ b/stochss/handlers/util/stochss_job.py @@ -49,8 +49,13 @@ class StochSSJob(StochSSBase): ################################################################################################ ''' - TYPES = {"gillespy":"_ES", "parameterSweep":"_PS"} - TITLES = {"gillespy":"Ensemble Simulation", "parameterSweep":"Parameter Sweep"} + TYPES = { + "gillespy":"_ES", "spatial":"_SES", "parameterSweep":"_PS" + } + TITLES = { + "gillespy":"Ensemble Simulation", "spatial":"Spatial Ensemble Simulation", + "parameterSweep":"Parameter Sweep" + } def __init__(self, path, new=False, data=None): ''' From 6c02df48da9ec5bbe1884c0fb0c462a6983264c2 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 2 Sep 2022 14:31:10 -0400 Subject: [PATCH 19/97] Added support for running spatial workflows. --- stochss/handlers/util/spatial_simulation.py | 51 +++++++++++++++++++-- stochss/handlers/util/stochss_job.py | 2 +- 2 files changed, 47 insertions(+), 6 deletions(-) diff --git a/stochss/handlers/util/spatial_simulation.py b/stochss/handlers/util/spatial_simulation.py index f5ca6fa6ad..31b274d4e1 100644 --- a/stochss/handlers/util/spatial_simulation.py +++ b/stochss/handlers/util/spatial_simulation.py @@ -17,9 +17,17 @@ ''' import os -from spatialpy import Solver +import numpy +import pickle +import logging +import traceback + +from spatialpy import TimeSpan, Solver from .stochss_job import StochSSJob +from .stochss_errors import StochSSAPIError, StochSSJobResultsError + +log = logging.getLogger("stochss") class SpatialSimulation(StochSSJob): ''' @@ -52,9 +60,29 @@ def __init__(self, path, preview=False, target=None): def __get_run_settings(self): - solver_map = {"SSA":Solver(model=self.s_py_model)} - return self.get_run_settings(settings=self.settings, solver_map=solver_map) + return self.get_run_settings(settings=self.settings, solver_map=None) + @classmethod + def __store_pickled_results(cls, results): + try: + with open('results/results.p', 'wb') as results_file: + pickle.dump(results, results_file) + except Exception as err: + message = f"Error storing pickled results: {err}\n{traceback.format_exc()}" + log.error(message) + return message + return False + + def __update_timespan(self): + if "timespanSettings" in self.settings: + keys = self.settings['timespanSettings'].keys() + if "endSim" in keys and "timeStep" in keys and "timestepSize" in keys: + end = self.settings['timespanSettings']['endSim'] + step_size = self.settings['timespanSettings']['timeStep'] + timestep_size = self.settings['timespanSettings']['timestepSize'] + self.s_py_model.timespan( + TimeSpan.arange(step_size, t=end + step_size, timestep_size=timestep_size) + ) def run(self, preview=False, verbose=False): ''' @@ -88,6 +116,19 @@ def run(self, preview=False, verbose=False): plot["layout"]["autosize"] = True plot["config"] = {"responsive": True, "displayModeBar": True} return plot - else: - print("Running spatial simulation") + if verbose: + log.info("Running the spatial ensemble simulation") + self.__update_timespan() + kwargs = self.__get_run_settings() + results = self.s_py_model.run(**kwargs) + if verbose: + log.info("The spatial ensemble simulation has completed") + log.info("Storing the results as pickle") + if not 'results' in os.listdir(): + os.mkdir('results') + pkl_err = self.__store_pickled_results(results=results) + if pkl_err: + message = "An unexpected error occured with the result object" + trace = str(pkl_err) + raise StochSSJobResultsError(message, trace) return None diff --git a/stochss/handlers/util/stochss_job.py b/stochss/handlers/util/stochss_job.py index 4cd70e5045..826993f7fa 100644 --- a/stochss/handlers/util/stochss_job.py +++ b/stochss/handlers/util/stochss_job.py @@ -589,7 +589,7 @@ def get_run_settings(cls, settings, solver_map): Dictionary mapping algorithm to solver ''' settings = settings['simulationSettings'] - kwargs = {"solver":solver_map[settings['algorithm']]} + kwargs = {} if solver_map is None else {"solver":solver_map[settings['algorithm']]} if settings['algorithm'] in ("ODE", "Hybrid-Tau-Leaping") and \ "CSolver" not in kwargs['solver'].name: integrator_options = {"atol":settings['absoluteTol'], "rtol":settings['relativeTol']} From 9ff2e829cd5da90b6158dc2e0d33ed671225e87c Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 2 Sep 2022 15:07:18 -0400 Subject: [PATCH 20/97] Fixed issues with review model section. --- client/model-view/model-view.js | 20 +++++++----- client/model-view/templates/domainViewer.pug | 34 ++++++++++++-------- client/model-view/views/domain-viewer.js | 1 + 3 files changed, 34 insertions(+), 21 deletions(-) diff --git a/client/model-view/model-view.js b/client/model-view/model-view.js index 81efcb7c7e..1176928735 100644 --- a/client/model-view/model-view.js +++ b/client/model-view/model-view.js @@ -327,14 +327,18 @@ module.exports = View.extend({ this.toggleVolumeContainer(); }, setReadOnlyMode: function (component) { - $(this.queryByHook(component + '-edit-tab')).addClass("disabled"); - $(".nav .disabled>a").on("click", (e) => { - e.preventDefault(); - return false; - }); - $(this.queryByHook(component + '-view-tab')).tab('show'); - $(this.queryByHook('edit-' + component)).removeClass('active'); - $(this.queryByHook('view-' + component)).addClass('active'); + if(this.model.is_spatial) { + $(this.queryByHook("system-volume-container")).css("display", "none"); + }else{ + $(this.queryByHook(component + '-edit-tab')).addClass("disabled"); + $(".nav .disabled>a").on("click", (e) => { + e.preventDefault(); + return false; + }); + $(this.queryByHook(component + '-view-tab')).tab('show'); + $(this.queryByHook('edit-' + component)).removeClass('active'); + $(this.queryByHook('view-' + component)).addClass('active'); + } }, toggleVolumeContainer: function () { if(!this.model.is_spatial) { diff --git a/client/model-view/templates/domainViewer.pug b/client/model-view/templates/domainViewer.pug index d675aa0174..26866a60f5 100644 --- a/client/model-view/templates/domainViewer.pug +++ b/client/model-view/templates/domainViewer.pug @@ -57,26 +57,34 @@ div#domain-viewer.card div(data-hook="view-domain-plot-container" style="display: none") - div: h4 Domain and Particle Preview + div.card-header.pb-0 - div.row + h4.inline.mr-3 Domain and Particle Preview - div.col-sm-8 + button.btn.btn-outline-collapse(data-toggle="collapse" data-target="#collapse-domain-preview" data-hook="collapse-domain-preview-btn") - - div(data-hook="view-domain-plot") + div.collapse.show(id="collapse-domain-preview") - div.col-sm-4 + div.card-body - div.mt-2.particle-view(data-hook="domain-particle-viewer") + div.row - div.mt-2.particle-view(data-hook="domain-select-particle") + div.col-sm-8 - div.text-info - | Click on a particle to view its properties. + div(data-hook="view-domain-plot") - div.mt-2 + div.col-sm-4 - h4 Particles per Type + div.mt-2.particle-view(data-hook="domain-particle-viewer") - table.table - tbody(data-hook="domain-types-quick-view") + div.mt-2.particle-view(data-hook="domain-select-particle") + + div.text-info + | Click on a particle to view its properties. + + div.mt-2 + + h4 Particles per Type + + table.table + tbody(data-hook="domain-types-quick-view") diff --git a/client/model-view/views/domain-viewer.js b/client/model-view/views/domain-viewer.js index c2a7d99b18..720501ba4c 100644 --- a/client/model-view/views/domain-viewer.js +++ b/client/model-view/views/domain-viewer.js @@ -37,6 +37,7 @@ module.exports = View.extend({ 'click [data-hook=domain-edit-tab]' : 'handleModeSwitch', 'click [data-hook=domain-view-tab]' : 'handleModeSwitch', 'click [data-hook=collapse]' : 'changeCollapseButtonText', + 'click [data-hook=collapse-domain-preview-btn]' : 'changeCollapseButtonText', 'click [data-hook=select-external-domain]' : 'handleViewExternalDomains', 'click [data-hook=edit-domain-btn]' : 'editDomain', 'click [data-hook=create-domain]' : 'editDomain', From 06d106ec1c486a919ff23b96464dc4b3a713ad07 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 6 Sep 2022 11:00:32 -0400 Subject: [PATCH 21/97] Added basic support for visualizing job results. --- .../job-view/templates/spatialResultsView.pug | 98 +++++++++++++++++++ client/job-view/views/job-results-view.js | 28 ++++-- stochss/handlers/util/stochss_job.py | 28 ++++++ stochss/handlers/workflows.py | 4 + 4 files changed, 148 insertions(+), 10 deletions(-) create mode 100644 client/job-view/templates/spatialResultsView.pug diff --git a/client/job-view/templates/spatialResultsView.pug b/client/job-view/templates/spatialResultsView.pug new file mode 100644 index 0000000000..95394b5a79 --- /dev/null +++ b/client/job-view/templates/spatialResultsView.pug @@ -0,0 +1,98 @@ +div#workflow-results.card + + div.card-header.pb-0 + + h3.inline Results + + button.btn.btn-outline-collapse(data-toggle="collapse" data-target="#collapse-results" data-hook="collapse-results-btn") - + + div.collapse.show(id="collapse-results" data-hook="workflow-results") + + div.card-body + + div.collapse(id="edit-plot-args" data-hook="edit-plot-args") + + div.mr-3.inline + + h6 Title: + + div.inline(style="width: 80%") + + div(id="title" data-hook="title") + + div.card + + div.card-header.pb-0 + + h5.inline Plot Trajectories + + button.btn.btn-outline-collapse( + data-toggle="collapse" + data-target="#collapse-spatial" + id="collapse-spatial-btn" + data-hook="collapse-spatial-btn" + data-trigger="collapse-plot-container" + data-type="spatial" + ) - + + div.collapse.show(id="collapse-spatial") + + div.card-body + + div(data-hook="spatial-plot") + + div.spinner-border.workflow-plot(data-hook="spatial-plot-spinner") + + button.btn.btn-primary.box-shadow(data-hook="spatial-edit-plot" data-target="edit-plot" disabled) Edit Plot + + button.btn.btn-primary.box-shadow.dropdown-toggle( + id="spatial-download" + data-hook="spatial-download" + data-toggle="dropdown", + aria-haspopup="true", + aria-expanded="false", + type="button" + disabled + ) Download + + ul.dropdown-menu(aria-labelledby="#spatial-download") + li.dropdown-item( + data-hook="spatial-download-png-custom" + data-target="download-png-custom" + data-type="spatial" + ) Plot as .png + li.dropdown-item( + data-hook="spatial-download-json" + data-target="download-json" + data-type="spatial" + ) Plot as .json + li.dropdown-item( + data-hook="spatial-plot-csv" + data-target="download-plot-csv" + data-type="spatial" + ) Plot Results as .csv + + div + + button.btn.btn-primary.box-shadow(id="convert-to-notebook" data-hook="convert-to-notebook") Convert to Notebook + + button.btn.btn-primary.box-shadow(id="download-results-csv" data-hook="download-results-csv") Download Full Results as .csv + + button.btn.btn-primary.box-shadow(id="job-presentation" data-hook="job-presentation") Publish + + div.saving-status(data-hook="job-action-start") + + div.spinner-grow + + span Publishing ... + + div.saved-status(data-hook="job-action-end") + + span Published + + div.save-error-status(data-hook="job-action-err") + + span Error + + div.text-info(data-hook="update-format-message" style="display: none;") + | To publish you job the workflows format must be updated. diff --git a/client/job-view/views/job-results-view.js b/client/job-view/views/job-results-view.js index b0a39a5a7c..809e9f4140 100644 --- a/client/job-view/views/job-results-view.js +++ b/client/job-view/views/job-results-view.js @@ -29,10 +29,11 @@ let View = require('ampersand-view'); let SelectView = require('ampersand-select-view'); let SweepParametersView = require('./sweep-parameter-range-view'); //templates -let gillespyResultsTemplate = require('../templates/gillespyResultsView.pug'); -let gillespyResultsEnsembleTemplate = require('../templates/gillespyResultsEnsembleView.pug'); -let parameterSweepResultsTemplate = require('../templates/parameterSweepResultsView.pug'); -let parameterScanTemplate = require('../templates/parameterScanResultsView.pug'); +let wellMixedTemplate = require('../templates/gillespyResultsView.pug'); +let ensembleTemplate = require('../templates/gillespyResultsEnsembleView.pug'); +let sweepTemplate = require('../templates/parameterSweepResultsView.pug'); +let scanTemplate = require('../templates/parameterScanResultsView.pug'); +let spatialTemplate = require('../templates/spatialResultsView.pug'); module.exports = View.extend({ events: { @@ -66,12 +67,13 @@ module.exports = View.extend({ render: function (attrs, options) { let isEnsemble = this.model.settings.simulationSettings.realizations > 1 && this.model.settings.simulationSettings.algorithm !== "ODE"; - let isParameterScan = this.model.settings.parameterSweepSettings.parameters.length > 2 - if(this.titleType === "Parameter Sweep"){ - this.template = isParameterScan ? parameterScanTemplate : parameterSweepResultsTemplate; - }else{ - this.template = isEnsemble ? gillespyResultsEnsembleTemplate : gillespyResultsTemplate; + let isParameterScan = this.model.settings.parameterSweepSettings.parameters.length > 2; + let templates = { + "Ensemble Simulation": isEnsemble ? ensembleTemplate : wellMixedTemplate, + "Parameter Sweep": isParameterScan ? scanTemplate : sweepTemplate, + "Spatial Ensemble Simulation": spatialTemplate } + this.template = templates[this.titleType]; View.prototype.render.apply(this, arguments); if(this.readOnly) { $(this.queryByHook("job-presentation")).css("display", "none"); @@ -86,7 +88,7 @@ module.exports = View.extend({ } if(this.titleType === "Ensemble Simulation") { var type = isEnsemble ? "stddevran" : "trajectories"; - }else{ + }else if(this.titleType === "Parameter Sweep") { this.tsPlotData = {"parameters":{}}; this.fixedParameters = {}; var type = "ts-psweep"; @@ -103,6 +105,8 @@ module.exports = View.extend({ } this.getPlot("psweep"); this.renderSweepParameterView(); + }else{ + var type = "spatial"; } this.getPlot(type); }, @@ -200,6 +204,10 @@ module.exports = View.extend({ data['sim_type'] = "GillesPy2_PS"; data['data_keys'] = this.getDataKeys(true); data['plt_key'] = type === "ts-psweep-mp" ? "mltplplt" : this.tsPlotData.type; + }else if(type === "spatial") { + data['sim_type'] = "SpatialPy"; + data['data_keys'] = {}; + data['plt_key'] = type; }else { data['sim_type'] = "GillesPy2"; data['data_keys'] = {}; diff --git a/stochss/handlers/util/stochss_job.py b/stochss/handlers/util/stochss_job.py index 826993f7fa..7978278131 100644 --- a/stochss/handlers/util/stochss_job.py +++ b/stochss/handlers/util/stochss_job.py @@ -494,6 +494,34 @@ def get_plot_from_results(self, data_keys, plt_key, add_config=False): message = f"The requested plot is not available: {str(err)}" raise PlotNotAvailableError(message, traceback.format_exc()) from err + def get_plot_from_spatial_results(self, data_keys, add_config=False): + ''' + Get the plotly figure for the results of a job + + Attributes + ---------- + data_keys : dict + Dictionary of param names and values used to identify the correct data. + add_config : bool + Whether or not to add plotly config settings. + ''' + try: + self.log("info", "Loading the results...") + result = self.__get_filtered_ensemble_results(None) + self.log("info", "Generating the plot...") + fig = result.plot_property( + "type", width="auto", height="auto", animated=True, return_plotly_figure=True + ) + if add_config: + fig['config'] = {"responsive": True} + self.log("info", "Loading the plot...") + return json.loads(json.dumps(fig, cls=plotly.utils.PlotlyJSONEncoder)) + except FileNotFoundError as err: + message = f"Could not find the results pickle file: {str(err)}" + raise StochSSFileNotFoundError(message, traceback.format_exc()) from err + except KeyError as err: + message = f"The requested plot is not available: {str(err)}" + raise PlotNotAvailableError(message, traceback.format_exc()) from err def get_psweep_csvzip_from_results(self, fixed, name): ''' diff --git a/stochss/handlers/workflows.py b/stochss/handlers/workflows.py index 930715b279..51f0ca4d08 100644 --- a/stochss/handlers/workflows.py +++ b/stochss/handlers/workflows.py @@ -240,6 +240,10 @@ async def get(self): fig = job.get_plot_from_results(data_keys=body['data_keys'], plt_key=body['plt_key'], add_config=True) job.print_logs(log) + elif body['sim_type'] == "SpatialPy": + fig = job.get_plot_from_spatial_results( + data_keys=body['data_keys'], add_config=True + ) else: fig = job.get_psweep_plot_from_results(fixed=body['data_keys'], kwargs=body['plt_key'], add_config=True) From 1e5c6be7cebae1dd6e4cddd7f1c8980c8c3718ea Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 6 Sep 2022 11:55:52 -0400 Subject: [PATCH 22/97] Added support for downloading full spatial job results as csv. --- client/job-view/views/job-results-view.js | 1 + stochss/handlers/util/stochss_job.py | 14 ++++++++++---- 2 files changed, 11 insertions(+), 4 deletions(-) diff --git a/client/job-view/views/job-results-view.js b/client/job-view/views/job-results-view.js index 809e9f4140..cadc876795 100644 --- a/client/job-view/views/job-results-view.js +++ b/client/job-view/views/job-results-view.js @@ -107,6 +107,7 @@ module.exports = View.extend({ this.renderSweepParameterView(); }else{ var type = "spatial"; + $(this.queryByHook("spatial-plot-csv")).css('display', 'none'); } this.getPlot(type); }, diff --git a/stochss/handlers/util/stochss_job.py b/stochss/handlers/util/stochss_job.py index 7978278131..15ec5d0b08 100644 --- a/stochss/handlers/util/stochss_job.py +++ b/stochss/handlers/util/stochss_job.py @@ -361,9 +361,12 @@ def get_csvzip_from_results(self, data_keys, proc_key, name): result = result.average_ensemble() self.log("info", "Generating CSV files...") with tempfile.TemporaryDirectory() as tmp_dir: - result.to_csv(path=tmp_dir, nametag=name, stamp="") - if data_keys: - self.__write_parameters_csv(path=tmp_dir, name=name, data_keys=data_keys) + if hasattr(result, "to_csv"): + result.to_csv(path=tmp_dir, nametag=name, stamp="") + if data_keys: + self.__write_parameters_csv(path=tmp_dir, name=name, data_keys=data_keys) + else: + result.export_to_csv(folder_name=os.path.join(tmp_dir, name)) self.log("info", "Generating zip archive...") return self.__get_csvzip(dirname=tmp_dir, name=name) except FileNotFoundError as err: @@ -388,7 +391,10 @@ def get_full_csvzip_from_results(self, name): with tempfile.TemporaryDirectory() as tmp_dir: if not isinstance(results, dict): self.log("info", "Generating CSV files...") - results.to_csv(path=tmp_dir, nametag=name, stamp="") + if hasattr(results, "to_csv"): + results.to_csv(path=tmp_dir, nametag=name, stamp="") + else: + results.export_to_csv(folder_name=os.path.join(tmp_dir, name)) self.log("info", "Generating zip archive...") return self.__get_csvzip(dirname=tmp_dir, name=name) def get_name(b_name, tag): From 991b8658f8c7393066e88158a2718865112669ba Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Wed, 7 Sep 2022 12:04:27 -0400 Subject: [PATCH 23/97] Added support for target of interest and target mode in spatial job results. --- .../job-view/templates/spatialResultsView.pug | 16 ++++ client/job-view/views/job-results-view.js | 92 ++++++++++++++++--- client/tooltips.js | 9 +- stochss/handlers/util/stochss_job.py | 20 +++- 4 files changed, 119 insertions(+), 18 deletions(-) diff --git a/client/job-view/templates/spatialResultsView.pug b/client/job-view/templates/spatialResultsView.pug index 95394b5a79..eeb1e915ae 100644 --- a/client/job-view/templates/spatialResultsView.pug +++ b/client/job-view/templates/spatialResultsView.pug @@ -20,6 +20,22 @@ div#workflow-results.card div(id="title" data-hook="title") + div.inline.horizontal-space + + span.inline(for="target-of-interest") Target of Interest: + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.spatialTarget) + + div.inline(id="target-of-interest" data-hook="target-of-interest-list") + + div.inline.horizontal-space.hidden(data-hook="job-results-mode") + + span.inline(for="target-of-interest") Mode: + + div.tooltip-icon(data-html="true" data-toggle="tooltip" title=this.tooltips.mode) + + div.inline(id="target-mode" data-hook="target-mode-list") + div.card div.card-header.pb-0 diff --git a/client/job-view/views/job-results-view.js b/client/job-view/views/job-results-view.js index cadc876795..3765e70c2f 100644 --- a/client/job-view/views/job-results-view.js +++ b/client/job-view/views/job-results-view.js @@ -40,6 +40,8 @@ module.exports = View.extend({ 'change [data-hook=title]' : 'setTitle', 'change [data-hook=xaxis]' : 'setXAxis', 'change [data-hook=yaxis]' : 'setYAxis', + 'change [data-hook=target-of-interest-list]' : 'getPlotForTarget', + 'change [data-hook=target-mode-list]' : 'getPlotForTargetMode', 'change [data-hook=specie-of-interest-list]' : 'getPlotForSpecies', 'change [data-hook=feature-extraction-list]' : 'getPlotForFeatureExtractor', 'change [data-hook=ensemble-aggragator-list]' : 'getPlotForEnsembleAggragator', @@ -60,7 +62,7 @@ module.exports = View.extend({ this.readOnly = Boolean(attrs.readOnly) ? attrs.readOnly : false; this.wkflName = attrs.wkflName; this.titleType = attrs.titleType; - this.tooltips = Tooltips.parameterSweepResults; + this.tooltips = Tooltips.jobResults; this.plots = {}; this.plotArgs = {}; }, @@ -107,6 +109,10 @@ module.exports = View.extend({ this.renderSweepParameterView(); }else{ var type = "spatial"; + this.spatialTarget = "type"; + this.targetIndex = null; + this.targetMode = "discrete"; + this.renderTargetOfInterestView(); $(this.queryByHook("spatial-plot-csv")).css('display', 'none'); } this.getPlot(type); @@ -150,29 +156,28 @@ module.exports = View.extend({ window.open(endpoint); }, getPlot: function (type) { - let self = this; this.cleanupPlotContainer(type); let data = this.getPlotData(type); if(data === null) { return }; let storageKey = JSON.stringify(data); data['plt_data'] = this.getPlotLayoutData(); if(Boolean(this.plots[storageKey])) { - let renderTypes = ['psweep', 'ts-psweep', 'ts-psweep-mp', 'mltplplt']; + let renderTypes = ['psweep', 'ts-psweep', 'ts-psweep-mp', 'mltplplt', 'spatial']; if(renderTypes.includes(type)) { this.plotFigure(this.plots[storageKey], type); } }else{ - let queryStr = "?path=" + this.model.directory + "&data=" + JSON.stringify(data); - let endpoint = path.join(app.getApiPath(), "workflow/plot-results") + queryStr; + let queryStr = `?path=${this.model.directory}&data=${JSON.stringify(data)}`; + let endpoint = `${path.join(app.getApiPath(), "workflow/plot-results")}${queryStr}`; app.getXHR(endpoint, { - success: function (err, response, body) { - self.plots[storageKey] = body; - self.plotFigure(body, type); + success: (err, response, body) => { + this.plots[storageKey] = body; + this.plotFigure(body, type); }, - error: function (err, response, body) { - $(self.queryByHook(type + "-plot-spinner")).css("display", "none"); - let message = "

    " + body.Message + "

    Please re-run this job to get this plot

    "; - $(self.queryByHook(type + "-plot")).html(message); + error: (err, response, body) => { + $(this.queryByHook(type + "-plot-spinner")).css("display", "none"); + let message = `

    ${body.Message}

    Please re-run this job to get this plot

    `; + $(this.queryByHook(type + "-plot")).html(message); } }); } @@ -207,7 +212,9 @@ module.exports = View.extend({ data['plt_key'] = type === "ts-psweep-mp" ? "mltplplt" : this.tsPlotData.type; }else if(type === "spatial") { data['sim_type'] = "SpatialPy"; - data['data_keys'] = {}; + data['data_keys'] = { + target: this.spatialTarget, index: this.targetIndex, mode: this.targetMode + }; data['plt_key'] = type; }else { data['sim_type'] = "GillesPy2"; @@ -237,6 +244,27 @@ module.exports = View.extend({ this.model.settings.parameterSweepSettings.speciesOfInterest = species; this.getPlot('psweep') }, + getPlotForTarget: function (e) { + let value = e.target.value; + if(["0", "1", "2"].includes(value)) { + this.spatialTarget = "v"; + this.targetIndex = number(value); + }else{ + this.spatialTarget = value; + this.targetIndex = null; + } + if(!["type", "v", "nu", "rho", "mass"].includes(this.spatialTarget)) { + $(this.queryByHook('job-results-mode')).css('display', 'inline-block'); + this.renderTargetModeView(); + }else{ + $(this.queryByHook('job-results-mode')).css('display', 'none'); + } + this.getPlot("spatial"); + }, + getPlotForTargetMode: function (e) { + this.targetMode = e.target.value; + this.getPlot("spatial"); + }, getPlotKey: function (type) { if(type === "psweep") { let realizations = this.model.settings.simulationSettings.realizations; @@ -473,6 +501,44 @@ module.exports = View.extend({ ); } }, + renderTargetOfInterestView: function () { + let species = this.model.model.species.map((specie) => { + return [specie.name, specie.name]; + }); + let header = Boolean(species) ? "Variables" : "Variables (empty)"; + let properties = [ + ["type", "Type"], ["0", "X Velocity"], ["1", "Y Velocity"], ["2", "Z Velocity"], + ["rho", "Density"], ["mass", "Mass"], ["nu", "Viscosity"] + ]; + let options = [ + {groupName: "Properties", options: properties}, + {groupName: header, options: species} + ]; + let targetOfInterestView = new SelectView({ + name: 'target', + required: true, + eagerValidate: true, + groupOptions: options, + value: this.spatialTarget + }); + app.registerRenderSubview(this, targetOfInterestView, "target-of-interest-list"); + }, + renderTargetModeView: function () { + if(this.targetModeView) { return; } + let options = [ + ["discrete", "Population (outputs: absolute value)"], + ["discrete-concentration", "Population (outputs: scaled by volume)"], + ["continuous", "Concentration"] + ]; + this.targetModeView = new SelectView({ + name: 'target-mode', + required: true, + eagerValidate: true, + options: options, + value: this.targetMode + }); + app.registerRenderSubview(this, this.targetModeView, "target-mode-list"); + }, setTitle: function (e) { this.plotArgs['title'] = e.target.value for (var storageKey in this.plots) { diff --git a/client/tooltips.js b/client/tooltips.js index 067224de3f..09895c828a 100644 --- a/client/tooltips.js +++ b/client/tooltips.js @@ -161,12 +161,17 @@ module.exports = { steps: "The number of steps used to determine the sweep values across the sweep range." }, - parameterSweepResults: { + jobResults: { species: "The variables to view sweep data for", mapper: "The 'feature extractor' which calculates a single value from the variables population/concentration data of each simulated trajectory.", - reducer: "The statistical function applied to the ensemble of values extracted by the 'feature extractor' from each simulation trajectory." + reducer: "The statistical function applied to the ensemble of values extracted by the 'feature extractor' from each simulation trajectory.", + + spatialTarget: "Variable or property to view results for.", + + mode: "Concentration - Variables will only be represented using continuous (floating point) values."+ + "
    Population - Variables will only be represented using discrete (integer count) values." }, workflowSelection: { ensembleSimulation: "Produce a time-series result for one or more simulation(s) of the model.", diff --git a/stochss/handlers/util/stochss_job.py b/stochss/handlers/util/stochss_job.py index 15ec5d0b08..cd091fc422 100644 --- a/stochss/handlers/util/stochss_job.py +++ b/stochss/handlers/util/stochss_job.py @@ -515,9 +515,23 @@ def get_plot_from_spatial_results(self, data_keys, add_config=False): self.log("info", "Loading the results...") result = self.__get_filtered_ensemble_results(None) self.log("info", "Generating the plot...") - fig = result.plot_property( - "type", width="auto", height="auto", animated=True, return_plotly_figure=True - ) + if data_keys['target'] in ("type", "nu", "rho", "mass"): + fig = result.plot_property( + data_keys['target'], width="auto", height="auto", animated=True, + return_plotly_figure=True + ) + elif data_keys['target'] == "v": + fig = result.plot_property( + data_keys['target'], p_ndx=data_keys['index'], width="auto", height="auto", + animated=True, return_plotly_figure=True + ) + else: + concentration = data_keys['mode'] == "discrete-concentration" + deterministic = data_keys['mode'] == "continuous" + fig = result.plot_species( + data_keys['target'], concentration=concentration, deterministic=deterministic, + width="auto", height="auto", animated=True, return_plotly_figure=True + ) if add_config: fig['config'] = {"responsive": True} self.log("info", "Loading the plot...") From 7ad7a23ff831df1ce6aaa62459b4154679e74ac2 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Wed, 7 Sep 2022 14:46:59 -0400 Subject: [PATCH 24/97] Added support for converting spatial jobs to notebooks. --- client/job-view/views/job-results-view.js | 19 +++++++++---------- stochss/handlers/util/stochss_job.py | 6 ++++-- stochss/handlers/workflows.py | 2 +- 3 files changed, 14 insertions(+), 13 deletions(-) diff --git a/client/job-view/views/job-results-view.js b/client/job-view/views/job-results-view.js index 3765e70c2f..21b52c9912 100644 --- a/client/job-view/views/job-results-view.js +++ b/client/job-view/views/job-results-view.js @@ -311,18 +311,17 @@ module.exports = View.extend({ this.getPlot(type); }, handleConvertToNotebookClick: function (e) { - let self = this; - if(this.titleType === "Ensemble Simulation") { - var type = "gillespy"; - }else if(this.titleType === "Parameter Sweep" && this.model.settings.parameterSweepSettings.parameters.length > 1) { - var type = "2d_parameter_sweep"; - }else{ - var type = "1d_parameter-sweep"; + let is2D = this.model.settings.parameterSweepSettings.parameters.length > 1; + let types = { + "Ensemble Simulation": "gillespy", + "Spatial Ensemble Simulation": "spatialpy", + "Parameter Sweep": is2D ? "2d_parameter_sweep" : "1d_parameter-sweep" } - let queryStr = "?path=" + this.model.directory + "&type=" + type; - let endpoint = path.join(app.getApiPath(), "workflow/notebook") + queryStr; + let type = types[this.titleType]; + let queryStr = `?path=${this.model.directory}&type=${type}`; + let endpoint = `${path.join(app.getApiPath(), "workflow/notebook")}${queryStr}`; app.getXHR(endpoint, { - success: function (err, response, body) { + success: (err, response, body) => { window.open(path.join(app.getBasePath(), "notebooks", body.FilePath)); } }); diff --git a/stochss/handlers/util/stochss_job.py b/stochss/handlers/util/stochss_job.py index cd091fc422..0792138c0d 100644 --- a/stochss/handlers/util/stochss_job.py +++ b/stochss/handlers/util/stochss_job.py @@ -444,14 +444,15 @@ def get_notebook_data(self): file = f"{self.get_name()}.ipynb" dirname = self.get_dir_name() if ".wkfl" in dirname: - code = "_ES" if info['type'] == "gillespy" else "_PS" + codes = {"gillespy": "_ES", "spatial": "_SES", "parameterSweep": "_PS"} + code = codes[info['type']] wkfl_name = self.get_name(path=dirname).replace(code, "_NB") file = f"{wkfl_name}_{file}" dirname = os.path.dirname(dirname) path = os.path.join(dirname, file) g_model, s_model = self.load_models() settings = self.load_settings() - if info['type'] == "gillespy": + if info['type'] in ("gillespy", "spatial"): wkfl_type = info['type'] elif info['type'] == "parameterSweep" and \ len(settings['parameterSweepSettings']['parameters']) == 1: @@ -747,6 +748,7 @@ def load_models(self): else: model_obj = StochSSSpatialModel(path=path) model = model_obj.convert_to_spatialpy() + model_obj.model['path'] = model_obj.get_file() return model, model_obj.model diff --git a/stochss/handlers/workflows.py b/stochss/handlers/workflows.py index 51f0ca4d08..dedb3a01f3 100644 --- a/stochss/handlers/workflows.py +++ b/stochss/handlers/workflows.py @@ -284,7 +284,7 @@ async def get(self): file_obj = StochSSJob(path=path) log.info(f"Loading data for {file_obj.get_file()}") kwargs = file_obj.get_notebook_data() - if "type" in kwargs.keys(): + if "type" in kwargs: wkfl_type = kwargs['type'] kwargs = kwargs['kwargs'] log.info(f"Converting {file_obj.get_file()} to notebook") From 71250bc84968872c087523958445d9e08cd443b9 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Wed, 7 Sep 2022 15:28:50 -0400 Subject: [PATCH 25/97] Added load time message for spatial job plots. --- .../job-view/templates/spatialResultsView.pug | 3 ++ client/job-view/views/job-results-view.js | 35 +++++++++++-------- 2 files changed, 24 insertions(+), 14 deletions(-) diff --git a/client/job-view/templates/spatialResultsView.pug b/client/job-view/templates/spatialResultsView.pug index eeb1e915ae..d2c4aee411 100644 --- a/client/job-view/templates/spatialResultsView.pug +++ b/client/job-view/templates/spatialResultsView.pug @@ -57,6 +57,9 @@ div#workflow-results.card div(data-hook="spatial-plot") + div(data-hook="spatial-plot-loading-msg") + | Spatial results may take a while to load. Load times are dependant on the number of outputs, number of variables, and the number of domain particles. + div.spinner-border.workflow-plot(data-hook="spatial-plot-spinner") button.btn.btn-primary.box-shadow(data-hook="spatial-edit-plot" data-target="edit-plot" disabled) Edit Plot diff --git a/client/job-view/views/job-results-view.js b/client/job-view/views/job-results-view.js index 21b52c9912..b68dc8065c 100644 --- a/client/job-view/views/job-results-view.js +++ b/client/job-view/views/job-results-view.js @@ -137,22 +137,24 @@ module.exports = View.extend({ }, 5000); }, cleanupPlotContainer: function (type) { - let el = this.queryByHook(type + "-plot"); + let el = this.queryByHook(`${type}-plot`); Plotly.purge(el); $(this.queryByHook(type + "-plot")).empty(); if(type === "ts-psweep" || type === "psweep"){ - $(this.queryByHook(type + "-download")).prop("disabled", true); - $(this.queryByHook(type + "-edit-plot")).prop("disabled", true); + $(this.queryByHook(`${type}-download`)).prop("disabled", true); + $(this.queryByHook(`${type}-edit-plot`)).prop("disabled", true); $(this.queryByHook("multiple-plots")).prop("disabled", true); + }else if(type === "spatial") { + $(this.queryByHook("spatial-plot-loading-msg")).css("display", "block"); } - $(this.queryByHook(type + "-plot-spinner")).css("display", "block"); + $(this.queryByHook(`${type}-plot-spinner`)).css("display", "block"); }, downloadCSV: function (csvType, data) { - var queryStr = "?path=" + this.model.directory + "&type=" + csvType; + var queryStr = `?path=${this.model.directory}&type=${csvType}`; if(data) { - queryStr += "&data=" + JSON.stringify(data); + queryStr += `&data=${JSON.stringify(data)}`; } - let endpoint = path.join(app.getApiPath(), "job/csv") + queryStr; + let endpoint = `${path.join(app.getApiPath(), "job/csv")}${queryStr}`; window.open(endpoint); }, getPlot: function (type) { @@ -175,9 +177,12 @@ module.exports = View.extend({ this.plotFigure(body, type); }, error: (err, response, body) => { - $(this.queryByHook(type + "-plot-spinner")).css("display", "none"); + if(type === "spatial") { + $(this.queryByHook("spatial-plot-loading-msg")).css("display", "none"); + } + $(this.queryByHook(`${type}-plot-spinner`)).css("display", "none"); let message = `

    ${body.Message}

    Please re-run this job to get this plot

    `; - $(this.queryByHook(type + "-plot")).html(message); + $(this.queryByHook(`${type}-plot`)).html(message); } }); } @@ -405,13 +410,15 @@ module.exports = View.extend({ }); }, plotFigure: function (figure, type) { - let self = this; - let hook = type + "-plot"; + let hook = `${type}-plot`; let el = this.queryByHook(hook); Plotly.newPlot(el, figure); - $(this.queryByHook(type + "-plot-spinner")).css("display", "none"); - $(this.queryByHook(type + "-edit-plot")).prop("disabled", false); - $(this.queryByHook(type + "-download")).prop("disabled", false); + if(type === "spatial") { + $(this.queryByHook("spatial-plot-loading-msg")).css("display", "none"); + } + $(this.queryByHook(`${type}-plot-spinner`)).css("display", "none"); + $(this.queryByHook(`${type}-edit-plot`)).prop("disabled", false); + $(this.queryByHook(`${type}-download`)).prop("disabled", false); if(type === "trajectories" || (this.tsPlotData && this.tsPlotData.type === "trajectories")) { $(this.queryByHook("multiple-plots")).prop("disabled", false); } From 2be01416e33072af766f6528eec66acd0787c93a Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 8 Sep 2022 10:20:28 -0400 Subject: [PATCH 26/97] Updated plotly to latest. --- client/domain-view/domain-view.js | 2 +- client/job-view/views/job-results-view.js | 2 +- client/lib/plotly.js | 7 ------- client/pages/model-editor.js | 2 +- client/pages/multiple-plots.js | 2 +- package.json | 3 ++- 6 files changed, 6 insertions(+), 12 deletions(-) delete mode 100644 client/lib/plotly.js diff --git a/client/domain-view/domain-view.js b/client/domain-view/domain-view.js index 6afabcda6f..c90b8fbefb 100644 --- a/client/domain-view/domain-view.js +++ b/client/domain-view/domain-view.js @@ -21,7 +21,7 @@ let path = require('path'); let _ = require('underscore'); //support files let app = require('../app'); -let Plotly = require('../lib/plotly'); +let Plotly = require('plotly.js-dist'); //models let Particle = 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a=0,o=0;o>26,this.words[o]=67108863&e;for(;0!==a&&o>26,this.words[o]=67108863&e;if(0===a&&o>>13,p=0|o[1],d=8191&p,g=p>>>13,v=0|o[2],m=8191&v,y=v>>>13,x=0|o[3],b=8191&x,_=x>>>13,w=0|o[4],k=8191&w,A=w>>>13,T=0|o[5],M=8191&T,S=T>>>13,E=0|o[6],C=8191&E,L=E>>>13,z=0|o[7],O=8191&z,I=z>>>13,D=0|o[8],P=8191&D,R=D>>>13,F=0|o[9],B=8191&F,N=F>>>13,j=0|s[0],V=8191&j,U=j>>>13,q=0|s[1],H=8191&q,G=q>>>13,Y=0|s[2],W=8191&Y,X=Y>>>13,Z=0|s[3],$=8191&Z,J=Z>>>13,K=0|s[4],Q=8191&K,tt=K>>>13,et=0|s[5],rt=8191&et,nt=et>>>13,it=0|s[6],at=8191&it,ot=it>>>13,st=0|s[7],lt=8191&st,ct=st>>>13,ut=0|s[8],ht=8191&ut,ft=ut>>>13,pt=0|s[9],dt=8191&pt,gt=pt>>>13;r.negative=t.negative^e.negative,r.length=19;var vt=(c+(n=Math.imul(h,V))|0)+((8191&(i=(i=Math.imul(h,U))+Math.imul(f,V)|0))<<13)|0;c=((a=Math.imul(f,U))+(i>>>13)|0)+(vt>>>26)|0,vt&=67108863,n=Math.imul(d,V),i=(i=Math.imul(d,U))+Math.imul(g,V)|0,a=Math.imul(g,U);var mt=(c+(n=n+Math.imul(h,H)|0)|0)+((8191&(i=(i=i+Math.imul(h,G)|0)+Math.imul(f,H)|0))<<13)|0;c=((a=a+Math.imul(f,G)|0)+(i>>>13)|0)+(mt>>>26)|0,mt&=67108863,n=Math.imul(m,V),i=(i=Math.imul(m,U))+Math.imul(y,V)|0,a=Math.imul(y,U),n=n+Math.imul(d,H)|0,i=(i=i+Math.imul(d,G)|0)+Math.imul(g,H)|0,a=a+Math.imul(g,G)|0;var yt=(c+(n=n+Math.imul(h,W)|0)|0)+((8191&(i=(i=i+Math.imul(h,X)|0)+Math.imul(f,W)|0))<<13)|0;c=((a=a+Math.imul(f,X)|0)+(i>>>13)|0)+(yt>>>26)|0,yt&=67108863,n=Math.imul(b,V),i=(i=Math.imul(b,U))+Math.imul(_,V)|0,a=Math.imul(_,U),n=n+Math.imul(m,H)|0,i=(i=i+Math.imul(m,G)|0)+Math.imul(y,H)|0,a=a+Math.imul(y,G)|0,n=n+Math.imul(d,W)|0,i=(i=i+Math.imul(d,X)|0)+Math.imul(g,W)|0,a=a+Math.imul(g,X)|0;var xt=(c+(n=n+Math.imul(h,$)|0)|0)+((8191&(i=(i=i+Math.imul(h,J)|0)+Math.imul(f,$)|0))<<13)|0;c=((a=a+Math.imul(f,J)|0)+(i>>>13)|0)+(xt>>>26)|0,xt&=67108863,n=Math.imul(k,V),i=(i=Math.imul(k,U))+Math.imul(A,V)|0,a=Math.imul(A,U),n=n+Math.imul(b,H)|0,i=(i=i+Math.imul(b,G)|0)+Math.imul(_,H)|0,a=a+Math.imul(_,G)|0,n=n+Math.imul(m,W)|0,i=(i=i+Math.imul(m,X)|0)+Math.imul(y,W)|0,a=a+Math.imul(y,X)|0,n=n+Math.imul(d,$)|0,i=(i=i+Math.imul(d,J)|0)+Math.imul(g,$)|0,a=a+Math.imul(g,J)|0;var bt=(c+(n=n+Math.imul(h,Q)|0)|0)+((8191&(i=(i=i+Math.imul(h,tt)|0)+Math.imul(f,Q)|0))<<13)|0;c=((a=a+Math.imul(f,tt)|0)+(i>>>13)|0)+(bt>>>26)|0,bt&=67108863,n=Math.imul(M,V),i=(i=Math.imul(M,U))+Math.imul(S,V)|0,a=Math.imul(S,U),n=n+Math.imul(k,H)|0,i=(i=i+Math.imul(k,G)|0)+Math.imul(A,H)|0,a=a+Math.imul(A,G)|0,n=n+Math.imul(b,W)|0,i=(i=i+Math.imul(b,X)|0)+Math.imul(_,W)|0,a=a+Math.imul(_,X)|0,n=n+Math.imul(m,$)|0,i=(i=i+Math.imul(m,J)|0)+Math.imul(y,$)|0,a=a+Math.imul(y,J)|0,n=n+Math.imul(d,Q)|0,i=(i=i+Math.imul(d,tt)|0)+Math.imul(g,Q)|0,a=a+Math.imul(g,tt)|0;var _t=(c+(n=n+Math.imul(h,rt)|0)|0)+((8191&(i=(i=i+Math.imul(h,nt)|0)+Math.imul(f,rt)|0))<<13)|0;c=((a=a+Math.imul(f,nt)|0)+(i>>>13)|0)+(_t>>>26)|0,_t&=67108863,n=Math.imul(C,V),i=(i=Math.imul(C,U))+Math.imul(L,V)|0,a=Math.imul(L,U),n=n+Math.imul(M,H)|0,i=(i=i+Math.imul(M,G)|0)+Math.imul(S,H)|0,a=a+Math.imul(S,G)|0,n=n+Math.imul(k,W)|0,i=(i=i+Math.imul(k,X)|0)+Math.imul(A,W)|0,a=a+Math.imul(A,X)|0,n=n+Math.imul(b,$)|0,i=(i=i+Math.imul(b,J)|0)+Math.imul(_,$)|0,a=a+Math.imul(_,J)|0,n=n+Math.imul(m,Q)|0,i=(i=i+Math.imul(m,tt)|0)+Math.imul(y,Q)|0,a=a+Math.imul(y,tt)|0,n=n+Math.imul(d,rt)|0,i=(i=i+Math.imul(d,nt)|0)+Math.imul(g,rt)|0,a=a+Math.imul(g,nt)|0;var wt=(c+(n=n+Math.imul(h,at)|0)|0)+((8191&(i=(i=i+Math.imul(h,ot)|0)+Math.imul(f,at)|0))<<13)|0;c=((a=a+Math.imul(f,ot)|0)+(i>>>13)|0)+(wt>>>26)|0,wt&=67108863,n=Math.imul(O,V),i=(i=Math.imul(O,U))+Math.imul(I,V)|0,a=Math.imul(I,U),n=n+Math.imul(C,H)|0,i=(i=i+Math.imul(C,G)|0)+Math.imul(L,H)|0,a=a+Math.imul(L,G)|0,n=n+Math.imul(M,W)|0,i=(i=i+Math.imul(M,X)|0)+Math.imul(S,W)|0,a=a+Math.imul(S,X)|0,n=n+Math.imul(k,$)|0,i=(i=i+Math.imul(k,J)|0)+Math.imul(A,$)|0,a=a+Math.imul(A,J)|0,n=n+Math.imul(b,Q)|0,i=(i=i+Math.imul(b,tt)|0)+Math.imul(_,Q)|0,a=a+Math.imul(_,tt)|0,n=n+Math.imul(m,rt)|0,i=(i=i+Math.imul(m,nt)|0)+Math.imul(y,rt)|0,a=a+Math.imul(y,nt)|0,n=n+Math.imul(d,at)|0,i=(i=i+Math.imul(d,ot)|0)+Math.imul(g,at)|0,a=a+Math.imul(g,ot)|0;var kt=(c+(n=n+Math.imul(h,lt)|0)|0)+((8191&(i=(i=i+Math.imul(h,ct)|0)+Math.imul(f,lt)|0))<<13)|0;c=((a=a+Math.imul(f,ct)|0)+(i>>>13)|0)+(kt>>>26)|0,kt&=67108863,n=Math.imul(P,V),i=(i=Math.imul(P,U))+Math.imul(R,V)|0,a=Math.imul(R,U),n=n+Math.imul(O,H)|0,i=(i=i+Math.imul(O,G)|0)+Math.imul(I,H)|0,a=a+Math.imul(I,G)|0,n=n+Math.imul(C,W)|0,i=(i=i+Math.imul(C,X)|0)+Math.imul(L,W)|0,a=a+Math.imul(L,X)|0,n=n+Math.imul(M,$)|0,i=(i=i+Math.imul(M,J)|0)+Math.imul(S,$)|0,a=a+Math.imul(S,J)|0,n=n+Math.imul(k,Q)|0,i=(i=i+Math.imul(k,tt)|0)+Math.imul(A,Q)|0,a=a+Math.imul(A,tt)|0,n=n+Math.imul(b,rt)|0,i=(i=i+Math.imul(b,nt)|0)+Math.imul(_,rt)|0,a=a+Math.imul(_,nt)|0,n=n+Math.imul(m,at)|0,i=(i=i+Math.imul(m,ot)|0)+Math.imul(y,at)|0,a=a+Math.imul(y,ot)|0,n=n+Math.imul(d,lt)|0,i=(i=i+Math.imul(d,ct)|0)+Math.imul(g,lt)|0,a=a+Math.imul(g,ct)|0;var At=(c+(n=n+Math.imul(h,ht)|0)|0)+((8191&(i=(i=i+Math.imul(h,ft)|0)+Math.imul(f,ht)|0))<<13)|0;c=((a=a+Math.imul(f,ft)|0)+(i>>>13)|0)+(At>>>26)|0,At&=67108863,n=Math.imul(B,V),i=(i=Math.imul(B,U))+Math.imul(N,V)|0,a=Math.imul(N,U),n=n+Math.imul(P,H)|0,i=(i=i+Math.imul(P,G)|0)+Math.imul(R,H)|0,a=a+Math.imul(R,G)|0,n=n+Math.imul(O,W)|0,i=(i=i+Math.imul(O,X)|0)+Math.imul(I,W)|0,a=a+Math.imul(I,X)|0,n=n+Math.imul(C,$)|0,i=(i=i+Math.imul(C,J)|0)+Math.imul(L,$)|0,a=a+Math.imul(L,J)|0,n=n+Math.imul(M,Q)|0,i=(i=i+Math.imul(M,tt)|0)+Math.imul(S,Q)|0,a=a+Math.imul(S,tt)|0,n=n+Math.imul(k,rt)|0,i=(i=i+Math.imul(k,nt)|0)+Math.imul(A,rt)|0,a=a+Math.imul(A,nt)|0,n=n+Math.imul(b,at)|0,i=(i=i+Math.imul(b,ot)|0)+Math.imul(_,at)|0,a=a+Math.imul(_,ot)|0,n=n+Math.imul(m,lt)|0,i=(i=i+Math.imul(m,ct)|0)+Math.imul(y,lt)|0,a=a+Math.imul(y,ct)|0,n=n+Math.imul(d,ht)|0,i=(i=i+Math.imul(d,ft)|0)+Math.imul(g,ht)|0,a=a+Math.imul(g,ft)|0;var Tt=(c+(n=n+Math.imul(h,dt)|0)|0)+((8191&(i=(i=i+Math.imul(h,gt)|0)+Math.imul(f,dt)|0))<<13)|0;c=((a=a+Math.imul(f,gt)|0)+(i>>>13)|0)+(Tt>>>26)|0,Tt&=67108863,n=Math.imul(B,H),i=(i=Math.imul(B,G))+Math.imul(N,H)|0,a=Math.imul(N,G),n=n+Math.imul(P,W)|0,i=(i=i+Math.imul(P,X)|0)+Math.imul(R,W)|0,a=a+Math.imul(R,X)|0,n=n+Math.imul(O,$)|0,i=(i=i+Math.imul(O,J)|0)+Math.imul(I,$)|0,a=a+Math.imul(I,J)|0,n=n+Math.imul(C,Q)|0,i=(i=i+Math.imul(C,tt)|0)+Math.imul(L,Q)|0,a=a+Math.imul(L,tt)|0,n=n+Math.imul(M,rt)|0,i=(i=i+Math.imul(M,nt)|0)+Math.imul(S,rt)|0,a=a+Math.imul(S,nt)|0,n=n+Math.imul(k,at)|0,i=(i=i+Math.imul(k,ot)|0)+Math.imul(A,at)|0,a=a+Math.imul(A,ot)|0,n=n+Math.imul(b,lt)|0,i=(i=i+Math.imul(b,ct)|0)+Math.imul(_,lt)|0,a=a+Math.imul(_,ct)|0,n=n+Math.imul(m,ht)|0,i=(i=i+Math.imul(m,ft)|0)+Math.imul(y,ht)|0,a=a+Math.imul(y,ft)|0;var Mt=(c+(n=n+Math.imul(d,dt)|0)|0)+((8191&(i=(i=i+Math.imul(d,gt)|0)+Math.imul(g,dt)|0))<<13)|0;c=((a=a+Math.imul(g,gt)|0)+(i>>>13)|0)+(Mt>>>26)|0,Mt&=67108863,n=Math.imul(B,W),i=(i=Math.imul(B,X))+Math.imul(N,W)|0,a=Math.imul(N,X),n=n+Math.imul(P,$)|0,i=(i=i+Math.imul(P,J)|0)+Math.imul(R,$)|0,a=a+Math.imul(R,J)|0,n=n+Math.imul(O,Q)|0,i=(i=i+Math.imul(O,tt)|0)+Math.imul(I,Q)|0,a=a+Math.imul(I,tt)|0,n=n+Math.imul(C,rt)|0,i=(i=i+Math.imul(C,nt)|0)+Math.imul(L,rt)|0,a=a+Math.imul(L,nt)|0,n=n+Math.imul(M,at)|0,i=(i=i+Math.imul(M,ot)|0)+Math.imul(S,at)|0,a=a+Math.imul(S,ot)|0,n=n+Math.imul(k,lt)|0,i=(i=i+Math.imul(k,ct)|0)+Math.imul(A,lt)|0,a=a+Math.imul(A,ct)|0,n=n+Math.imul(b,ht)|0,i=(i=i+Math.imul(b,ft)|0)+Math.imul(_,ht)|0,a=a+Math.imul(_,ft)|0;var St=(c+(n=n+Math.imul(m,dt)|0)|0)+((8191&(i=(i=i+Math.imul(m,gt)|0)+Math.imul(y,dt)|0))<<13)|0;c=((a=a+Math.imul(y,gt)|0)+(i>>>13)|0)+(St>>>26)|0,St&=67108863,n=Math.imul(B,$),i=(i=Math.imul(B,J))+Math.imul(N,$)|0,a=Math.imul(N,J),n=n+Math.imul(P,Q)|0,i=(i=i+Math.imul(P,tt)|0)+Math.imul(R,Q)|0,a=a+Math.imul(R,tt)|0,n=n+Math.imul(O,rt)|0,i=(i=i+Math.imul(O,nt)|0)+Math.imul(I,rt)|0,a=a+Math.imul(I,nt)|0,n=n+Math.imul(C,at)|0,i=(i=i+Math.imul(C,ot)|0)+Math.imul(L,at)|0,a=a+Math.imul(L,ot)|0,n=n+Math.imul(M,lt)|0,i=(i=i+Math.imul(M,ct)|0)+Math.imul(S,lt)|0,a=a+Math.imul(S,ct)|0,n=n+Math.imul(k,ht)|0,i=(i=i+Math.imul(k,ft)|0)+Math.imul(A,ht)|0,a=a+Math.imul(A,ft)|0;var Et=(c+(n=n+Math.imul(b,dt)|0)|0)+((8191&(i=(i=i+Math.imul(b,gt)|0)+Math.imul(_,dt)|0))<<13)|0;c=((a=a+Math.imul(_,gt)|0)+(i>>>13)|0)+(Et>>>26)|0,Et&=67108863,n=Math.imul(B,Q),i=(i=Math.imul(B,tt))+Math.imul(N,Q)|0,a=Math.imul(N,tt),n=n+Math.imul(P,rt)|0,i=(i=i+Math.imul(P,nt)|0)+Math.imul(R,rt)|0,a=a+Math.imul(R,nt)|0,n=n+Math.imul(O,at)|0,i=(i=i+Math.imul(O,ot)|0)+Math.imul(I,at)|0,a=a+Math.imul(I,ot)|0,n=n+Math.imul(C,lt)|0,i=(i=i+Math.imul(C,ct)|0)+Math.imul(L,lt)|0,a=a+Math.imul(L,ct)|0,n=n+Math.imul(M,ht)|0,i=(i=i+Math.imul(M,ft)|0)+Math.imul(S,ht)|0,a=a+Math.imul(S,ft)|0;var Ct=(c+(n=n+Math.imul(k,dt)|0)|0)+((8191&(i=(i=i+Math.imul(k,gt)|0)+Math.imul(A,dt)|0))<<13)|0;c=((a=a+Math.imul(A,gt)|0)+(i>>>13)|0)+(Ct>>>26)|0,Ct&=67108863,n=Math.imul(B,rt),i=(i=Math.imul(B,nt))+Math.imul(N,rt)|0,a=Math.imul(N,nt),n=n+Math.imul(P,at)|0,i=(i=i+Math.imul(P,ot)|0)+Math.imul(R,at)|0,a=a+Math.imul(R,ot)|0,n=n+Math.imul(O,lt)|0,i=(i=i+Math.imul(O,ct)|0)+Math.imul(I,lt)|0,a=a+Math.imul(I,ct)|0,n=n+Math.imul(C,ht)|0,i=(i=i+Math.imul(C,ft)|0)+Math.imul(L,ht)|0,a=a+Math.imul(L,ft)|0;var Lt=(c+(n=n+Math.imul(M,dt)|0)|0)+((8191&(i=(i=i+Math.imul(M,gt)|0)+Math.imul(S,dt)|0))<<13)|0;c=((a=a+Math.imul(S,gt)|0)+(i>>>13)|0)+(Lt>>>26)|0,Lt&=67108863,n=Math.imul(B,at),i=(i=Math.imul(B,ot))+Math.imul(N,at)|0,a=Math.imul(N,ot),n=n+Math.imul(P,lt)|0,i=(i=i+Math.imul(P,ct)|0)+Math.imul(R,lt)|0,a=a+Math.imul(R,ct)|0,n=n+Math.imul(O,ht)|0,i=(i=i+Math.imul(O,ft)|0)+Math.imul(I,ht)|0,a=a+Math.imul(I,ft)|0;var zt=(c+(n=n+Math.imul(C,dt)|0)|0)+((8191&(i=(i=i+Math.imul(C,gt)|0)+Math.imul(L,dt)|0))<<13)|0;c=((a=a+Math.imul(L,gt)|0)+(i>>>13)|0)+(zt>>>26)|0,zt&=67108863,n=Math.imul(B,lt),i=(i=Math.imul(B,ct))+Math.imul(N,lt)|0,a=Math.imul(N,ct),n=n+Math.imul(P,ht)|0,i=(i=i+Math.imul(P,ft)|0)+Math.imul(R,ht)|0,a=a+Math.imul(R,ft)|0;var Ot=(c+(n=n+Math.imul(O,dt)|0)|0)+((8191&(i=(i=i+Math.imul(O,gt)|0)+Math.imul(I,dt)|0))<<13)|0;c=((a=a+Math.imul(I,gt)|0)+(i>>>13)|0)+(Ot>>>26)|0,Ot&=67108863,n=Math.imul(B,ht),i=(i=Math.imul(B,ft))+Math.imul(N,ht)|0,a=Math.imul(N,ft);var It=(c+(n=n+Math.imul(P,dt)|0)|0)+((8191&(i=(i=i+Math.imul(P,gt)|0)+Math.imul(R,dt)|0))<<13)|0;c=((a=a+Math.imul(R,gt)|0)+(i>>>13)|0)+(It>>>26)|0,It&=67108863;var Dt=(c+(n=Math.imul(B,dt))|0)+((8191&(i=(i=Math.imul(B,gt))+Math.imul(N,dt)|0))<<13)|0;return c=((a=Math.imul(N,gt))+(i>>>13)|0)+(Dt>>>26)|0,Dt&=67108863,l[0]=vt,l[1]=mt,l[2]=yt,l[3]=xt,l[4]=bt,l[5]=_t,l[6]=wt,l[7]=kt,l[8]=At,l[9]=Tt,l[10]=Mt,l[11]=St,l[12]=Et,l[13]=Ct,l[14]=Lt,l[15]=zt,l[16]=Ot,l[17]=It,l[18]=Dt,0!==c&&(l[19]=c,r.length++),r};function d(t,e,r){return(new g).mulp(t,e,r)}function g(t,e){this.x=t,this.y=e}Math.imul||(p=f),a.prototype.mulTo=function(t,e){var r=this.length+t.length;return 10===this.length&&10===t.length?p(this,t,e):r<63?f(this,t,e):r<1024?function(t,e,r){r.negative=e.negative^t.negative,r.length=t.length+e.length;for(var n=0,i=0,a=0;a>>26)|0)>>>26,o&=67108863}r.words[a]=s,n=o,o=i}return 0!==n?r.words[a]=n:r.length--,r.strip()}(this,t,e):d(this,t,e)},g.prototype.makeRBT=function(t){for(var e=new Array(t),r=a.prototype._countBits(t)-1,n=0;n>=1;return n},g.prototype.permute=function(t,e,r,n,i,a){for(var o=0;o>>=1)i++;return 1<>>=13,r[2*o+1]=8191&a,a>>>=13;for(o=2*e;o>=26,e+=i/67108864|0,e+=a>>>26,this.words[r]=67108863&a}return 0!==e&&(this.words[r]=e,this.length++),this},a.prototype.muln=function(t){return this.clone().imuln(t)},a.prototype.sqr=function(){return this.mul(this)},a.prototype.isqr=function(){return this.imul(this.clone())},a.prototype.pow=function(t){var e=function(t){for(var e=new Array(t.bitLength()),r=0;r>>i}return e}(t);if(0===e.length)return new a(1);for(var r=this,n=0;n=0);var e,r=t%26,i=(t-r)/26,a=67108863>>>26-r<<26-r;if(0!==r){var o=0;for(e=0;e>>26-r}o&&(this.words[e]=o,this.length++)}if(0!==i){for(e=this.length-1;e>=0;e--)this.words[e+i]=this.words[e];for(e=0;e=0),i=e?(e-e%26)/26:0;var a=t%26,o=Math.min((t-a)/26,this.length),s=67108863^67108863>>>a<o)for(this.length-=o,c=0;c=0&&(0!==u||c>=i);c--){var h=0|this.words[c];this.words[c]=u<<26-a|h>>>a,u=h&s}return l&&0!==u&&(l.words[l.length++]=u),0===this.length&&(this.words[0]=0,this.length=1),this.strip()},a.prototype.ishrn=function(t,e,r){return n(0===this.negative),this.iushrn(t,e,r)},a.prototype.shln=function(t){return this.clone().ishln(t)},a.prototype.ushln=function(t){return this.clone().iushln(t)},a.prototype.shrn=function(t){return this.clone().ishrn(t)},a.prototype.ushrn=function(t){return this.clone().iushrn(t)},a.prototype.testn=function(t){n("number"==typeof t&&t>=0);var e=t%26,r=(t-e)/26,i=1<=0);var e=t%26,r=(t-e)/26;if(n(0===this.negative,"imaskn works only with positive numbers"),this.length<=r)return this;if(0!==e&&r++,this.length=Math.min(r,this.length),0!==e){var i=67108863^67108863>>>e<=67108864;e++)this.words[e]-=67108864,e===this.length-1?this.words[e+1]=1:this.words[e+1]++;return this.length=Math.max(this.length,e+1),this},a.prototype.isubn=function(t){if(n("number"==typeof t),n(t<67108864),t<0)return this.iaddn(-t);if(0!==this.negative)return this.negative=0,this.iaddn(t),this.negative=1,this;if(this.words[0]-=t,1===this.length&&this.words[0]<0)this.words[0]=-this.words[0],this.negative=1;else for(var e=0;e>26)-(l/67108864|0),this.words[i+r]=67108863&a}for(;i>26,this.words[i+r]=67108863&a;if(0===s)return this.strip();for(n(-1===s),s=0,i=0;i>26,this.words[i]=67108863&a;return this.negative=1,this.strip()},a.prototype._wordDiv=function(t,e){var r=(this.length,t.length),n=this.clone(),i=t,o=0|i.words[i.length-1];0!==(r=26-this._countBits(o))&&(i=i.ushln(r),n.iushln(r),o=0|i.words[i.length-1]);var s,l=n.length-i.length;if("mod"!==e){(s=new a(null)).length=l+1,s.words=new Array(s.length);for(var c=0;c=0;h--){var f=67108864*(0|n.words[i.length+h])+(0|n.words[i.length+h-1]);for(f=Math.min(f/o|0,67108863),n._ishlnsubmul(i,f,h);0!==n.negative;)f--,n.negative=0,n._ishlnsubmul(i,1,h),n.isZero()||(n.negative^=1);s&&(s.words[h]=f)}return s&&s.strip(),n.strip(),"div"!==e&&0!==r&&n.iushrn(r),{div:s||null,mod:n}},a.prototype.divmod=function(t,e,r){return n(!t.isZero()),this.isZero()?{div:new a(0),mod:new a(0)}:0!==this.negative&&0===t.negative?(s=this.neg().divmod(t,e),"mod"!==e&&(i=s.div.neg()),"div"!==e&&(o=s.mod.neg(),r&&0!==o.negative&&o.iadd(t)),{div:i,mod:o}):0===this.negative&&0!==t.negative?(s=this.divmod(t.neg(),e),"mod"!==e&&(i=s.div.neg()),{div:i,mod:s.mod}):0!=(this.negative&t.negative)?(s=this.neg().divmod(t.neg(),e),"div"!==e&&(o=s.mod.neg(),r&&0!==o.negative&&o.isub(t)),{div:s.div,mod:o}):t.length>this.length||this.cmp(t)<0?{div:new a(0),mod:this}:1===t.length?"div"===e?{div:this.divn(t.words[0]),mod:null}:"mod"===e?{div:null,mod:new a(this.modn(t.words[0]))}:{div:this.divn(t.words[0]),mod:new a(this.modn(t.words[0]))}:this._wordDiv(t,e);var i,o,s},a.prototype.div=function(t){return this.divmod(t,"div",!1).div},a.prototype.mod=function(t){return this.divmod(t,"mod",!1).mod},a.prototype.umod=function(t){return this.divmod(t,"mod",!0).mod},a.prototype.divRound=function(t){var e=this.divmod(t);if(e.mod.isZero())return e.div;var r=0!==e.div.negative?e.mod.isub(t):e.mod,n=t.ushrn(1),i=t.andln(1),a=r.cmp(n);return a<0||1===i&&0===a?e.div:0!==e.div.negative?e.div.isubn(1):e.div.iaddn(1)},a.prototype.modn=function(t){n(t<=67108863);for(var e=(1<<26)%t,r=0,i=this.length-1;i>=0;i--)r=(e*r+(0|this.words[i]))%t;return r},a.prototype.idivn=function(t){n(t<=67108863);for(var e=0,r=this.length-1;r>=0;r--){var i=(0|this.words[r])+67108864*e;this.words[r]=i/t|0,e=i%t}return this.strip()},a.prototype.divn=function(t){return this.clone().idivn(t)},a.prototype.egcd=function(t){n(0===t.negative),n(!t.isZero());var e=this,r=t.clone();e=0!==e.negative?e.umod(t):e.clone();for(var i=new a(1),o=new a(0),s=new a(0),l=new a(1),c=0;e.isEven()&&r.isEven();)e.iushrn(1),r.iushrn(1),++c;for(var u=r.clone(),h=e.clone();!e.isZero();){for(var f=0,p=1;0==(e.words[0]&p)&&f<26;++f,p<<=1);if(f>0)for(e.iushrn(f);f-- >0;)(i.isOdd()||o.isOdd())&&(i.iadd(u),o.isub(h)),i.iushrn(1),o.iushrn(1);for(var d=0,g=1;0==(r.words[0]&g)&&d<26;++d,g<<=1);if(d>0)for(r.iushrn(d);d-- >0;)(s.isOdd()||l.isOdd())&&(s.iadd(u),l.isub(h)),s.iushrn(1),l.iushrn(1);e.cmp(r)>=0?(e.isub(r),i.isub(s),o.isub(l)):(r.isub(e),s.isub(i),l.isub(o))}return{a:s,b:l,gcd:r.iushln(c)}},a.prototype._invmp=function(t){n(0===t.negative),n(!t.isZero());var e=this,r=t.clone();e=0!==e.negative?e.umod(t):e.clone();for(var i,o=new a(1),s=new a(0),l=r.clone();e.cmpn(1)>0&&r.cmpn(1)>0;){for(var c=0,u=1;0==(e.words[0]&u)&&c<26;++c,u<<=1);if(c>0)for(e.iushrn(c);c-- >0;)o.isOdd()&&o.iadd(l),o.iushrn(1);for(var h=0,f=1;0==(r.words[0]&f)&&h<26;++h,f<<=1);if(h>0)for(r.iushrn(h);h-- >0;)s.isOdd()&&s.iadd(l),s.iushrn(1);e.cmp(r)>=0?(e.isub(r),o.isub(s)):(r.isub(e),s.isub(o))}return(i=0===e.cmpn(1)?o:s).cmpn(0)<0&&i.iadd(t),i},a.prototype.gcd=function(t){if(this.isZero())return t.abs();if(t.isZero())return this.abs();var e=this.clone(),r=t.clone();e.negative=0,r.negative=0;for(var n=0;e.isEven()&&r.isEven();n++)e.iushrn(1),r.iushrn(1);for(;;){for(;e.isEven();)e.iushrn(1);for(;r.isEven();)r.iushrn(1);var i=e.cmp(r);if(i<0){var a=e;e=r,r=a}else if(0===i||0===r.cmpn(1))break;e.isub(r)}return r.iushln(n)},a.prototype.invm=function(t){return this.egcd(t).a.umod(t)},a.prototype.isEven=function(){return 0==(1&this.words[0])},a.prototype.isOdd=function(){return 1==(1&this.words[0])},a.prototype.andln=function(t){return this.words[0]&t},a.prototype.bincn=function(t){n("number"==typeof t);var e=t%26,r=(t-e)/26,i=1<>>26,s&=67108863,this.words[o]=s}return 0!==a&&(this.words[o]=a,this.length++),this},a.prototype.isZero=function(){return 1===this.length&&0===this.words[0]},a.prototype.cmpn=function(t){var e,r=t<0;if(0!==this.negative&&!r)return-1;if(0===this.negative&&r)return 1;if(this.strip(),this.length>1)e=1;else{r&&(t=-t),n(t<=67108863,"Number is too big");var i=0|this.words[0];e=i===t?0:it.length)return 1;if(this.length=0;r--){var n=0|this.words[r],i=0|t.words[r];if(n!==i){ni&&(e=1);break}}return e},a.prototype.gtn=function(t){return 1===this.cmpn(t)},a.prototype.gt=function(t){return 1===this.cmp(t)},a.prototype.gten=function(t){return this.cmpn(t)>=0},a.prototype.gte=function(t){return this.cmp(t)>=0},a.prototype.ltn=function(t){return-1===this.cmpn(t)},a.prototype.lt=function(t){return-1===this.cmp(t)},a.prototype.lten=function(t){return this.cmpn(t)<=0},a.prototype.lte=function(t){return this.cmp(t)<=0},a.prototype.eqn=function(t){return 0===this.cmpn(t)},a.prototype.eq=function(t){return 0===this.cmp(t)},a.red=function(t){return new w(t)},a.prototype.toRed=function(t){return n(!this.red,"Already a number in reduction context"),n(0===this.negative,"red works only with positives"),t.convertTo(this)._forceRed(t)},a.prototype.fromRed=function(){return n(this.red,"fromRed works only with numbers in reduction context"),this.red.convertFrom(this)},a.prototype._forceRed=function(t){return this.red=t,this},a.prototype.forceRed=function(t){return n(!this.red,"Already a number in reduction context"),this._forceRed(t)},a.prototype.redAdd=function(t){return n(this.red,"redAdd works only with red numbers"),this.red.add(this,t)},a.prototype.redIAdd=function(t){return n(this.red,"redIAdd works only with red numbers"),this.red.iadd(this,t)},a.prototype.redSub=function(t){return n(this.red,"redSub works only with red numbers"),this.red.sub(this,t)},a.prototype.redISub=function(t){return n(this.red,"redISub works only with red numbers"),this.red.isub(this,t)},a.prototype.redShl=function(t){return n(this.red,"redShl works only with red numbers"),this.red.shl(this,t)},a.prototype.redMul=function(t){return n(this.red,"redMul works only with red numbers"),this.red._verify2(this,t),this.red.mul(this,t)},a.prototype.redIMul=function(t){return n(this.red,"redMul works only with red numbers"),this.red._verify2(this,t),this.red.imul(this,t)},a.prototype.redSqr=function(){return n(this.red,"redSqr works only with red numbers"),this.red._verify1(this),this.red.sqr(this)},a.prototype.redISqr=function(){return n(this.red,"redISqr works only with red numbers"),this.red._verify1(this),this.red.isqr(this)},a.prototype.redSqrt=function(){return n(this.red,"redSqrt works only with red numbers"),this.red._verify1(this),this.red.sqrt(this)},a.prototype.redInvm=function(){return n(this.red,"redInvm works only with red numbers"),this.red._verify1(this),this.red.invm(this)},a.prototype.redNeg=function(){return n(this.red,"redNeg works only with red numbers"),this.red._verify1(this),this.red.neg(this)},a.prototype.redPow=function(t){return n(this.red&&!t.red,"redPow(normalNum)"),this.red._verify1(this),this.red.pow(this,t)};var v={k256:null,p224:null,p192:null,p25519:null};function m(t,e){this.name=t,this.p=new a(e,16),this.n=this.p.bitLength(),this.k=new a(1).iushln(this.n).isub(this.p),this.tmp=this._tmp()}function y(){m.call(this,"k256","ffffffff ffffffff ffffffff ffffffff ffffffff ffffffff fffffffe fffffc2f")}function x(){m.call(this,"p224","ffffffff ffffffff ffffffff ffffffff 00000000 00000000 00000001")}function b(){m.call(this,"p192","ffffffff ffffffff ffffffff fffffffe ffffffff ffffffff")}function _(){m.call(this,"25519","7fffffffffffffff ffffffffffffffff ffffffffffffffff ffffffffffffffed")}function w(t){if("string"==typeof t){var e=a._prime(t);this.m=e.p,this.prime=e}else n(t.gtn(1),"modulus must be greater than 1"),this.m=t,this.prime=null}function k(t){w.call(this,t),this.shift=this.m.bitLength(),this.shift%26!=0&&(this.shift+=26-this.shift%26),this.r=new a(1).iushln(this.shift),this.r2=this.imod(this.r.sqr()),this.rinv=this.r._invmp(this.m),this.minv=this.rinv.mul(this.r).isubn(1).div(this.m),this.minv=this.minv.umod(this.r),this.minv=this.r.sub(this.minv)}m.prototype._tmp=function(){var t=new a(null);return t.words=new Array(Math.ceil(this.n/13)),t},m.prototype.ireduce=function(t){var e,r=t;do{this.split(r,this.tmp),e=(r=(r=this.imulK(r)).iadd(this.tmp)).bitLength()}while(e>this.n);var n=e0?r.isub(this.p):r.strip(),r},m.prototype.split=function(t,e){t.iushrn(this.n,0,e)},m.prototype.imulK=function(t){return t.imul(this.k)},i(y,m),y.prototype.split=function(t,e){for(var r=Math.min(t.length,9),n=0;n>>22,i=a}i>>>=22,t.words[n-10]=i,0===i&&t.length>10?t.length-=10:t.length-=9},y.prototype.imulK=function(t){t.words[t.length]=0,t.words[t.length+1]=0,t.length+=2;for(var e=0,r=0;r>>=26,t.words[r]=i,e=n}return 0!==e&&(t.words[t.length++]=e),t},a._prime=function(t){if(v[t])return v[t];var e;if("k256"===t)e=new y;else if("p224"===t)e=new x;else if("p192"===t)e=new b;else{if("p25519"!==t)throw new Error("Unknown prime "+t);e=new _}return v[t]=e,e},w.prototype._verify1=function(t){n(0===t.negative,"red works only with positives"),n(t.red,"red works only with red numbers")},w.prototype._verify2=function(t,e){n(0==(t.negative|e.negative),"red works only with 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e=t[t.length-1];if(e.right)for(e=e.right;e;)t.push(e),e=e.left;else for(t.pop();t.length>0&&t[t.length-1].right===e;)e=t[t.length-1],t.pop()}},Object.defineProperty(f,"hasNext",{get:function(){var t=this._stack;if(0===t.length)return!1;if(t[t.length-1].right)return!0;for(var e=t.length-1;e>0;--e)if(t[e-1].left===t[e])return!0;return!1}}),f.update=function(t){var e=this._stack;if(0===e.length)throw new Error("Can't update empty node!");var r=new Array(e.length),n=e[e.length-1];r[r.length-1]=new a(n._color,n.key,t,n.left,n.right,n._count);for(var i=e.length-2;i>=0;--i)(n=e[i]).left===e[i+1]?r[i]=new a(n._color,n.key,n.value,r[i+1],n.right,n._count):r[i]=new a(n._color,n.key,n.value,n.left,r[i+1],n._count);return new c(this.tree._compare,r[0])},f.prev=function(){var t=this._stack;if(0!==t.length){var e=t[t.length-1];if(e.left)for(e=e.left;e;)t.push(e),e=e.right;else for(t.pop();t.length>0&&t[t.length-1].left===e;)e=t[t.length-1],t.pop()}},Object.defineProperty(f,"hasPrev",{get:function(){var t=this._stack;if(0===t.length)return!1;if(t[t.length-1].left)return!0;for(var e=t.length-1;e>0;--e)if(t[e-1].right===t[e])return!0;return!1}})},{}],228:[function(t,e,r){var n=[.9999999999998099,676.5203681218851,-1259.1392167224028,771.3234287776531,-176.6150291621406,12.507343278686905,-.13857109526572012,9984369578019572e-21,1.5056327351493116e-7],i=607/128,a=[.9999999999999971,57.15623566586292,-59.59796035547549,14.136097974741746,-.4919138160976202,3399464998481189e-20,4652362892704858e-20,-9837447530487956e-20,.0001580887032249125,-.00021026444172410488,.00021743961811521265,-.0001643181065367639,8441822398385275e-20,-26190838401581408e-21,36899182659531625e-22];function o(t){if(t<0)return Number("0/0");for(var e=a[0],r=a.length-1;r>0;--r)e+=a[r]/(t+r);var 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e=this.gl,r=t.model||l,n=t.view||l,i=t.projection||l,a=this.bounds,s=t._ortho||!1,u=o(r,n,i,a,s),h=u.cubeEdges,f=u.axis,b=n[12],_=n[13],w=n[14],k=n[15],A=(s?2:1)*this.pixelRatio*(i[3]*b+i[7]*_+i[11]*w+i[15]*k)/e.drawingBufferHeight,T=0;T<3;++T)this.lastCubeProps.cubeEdges[T]=h[T],this.lastCubeProps.axis[T]=f[T];var M=p;for(T=0;T<3;++T)d(p[T],T,this.bounds,h,f);e=this.gl;var S,E=g;for(T=0;T<3;++T)this.backgroundEnable[T]?E[T]=f[T]:E[T]=0;this._background.draw(r,n,i,a,E,this.backgroundColor),this._lines.bind(r,n,i,this);for(T=0;T<3;++T){var C=[0,0,0];f[T]>0?C[T]=a[1][T]:C[T]=a[0][T];for(var L=0;L<2;++L){var z=(T+1+L)%3,O=(T+1+(1^L))%3;this.gridEnable[z]&&this._lines.drawGrid(z,O,this.bounds,C,this.gridColor[z],this.gridWidth[z]*this.pixelRatio)}for(L=0;L<2;++L){z=(T+1+L)%3,O=(T+1+(1^L))%3;this.zeroEnable[O]&&Math.min(a[0][O],a[1][O])<=0&&Math.max(a[0][O],a[1][O])>=0&&this._lines.drawZero(z,O,this.bounds,C,this.zeroLineColor[O],this.zeroLineWidth[O]*this.pixelRatio)}}for(T=0;T<3;++T){this.lineEnable[T]&&this._lines.drawAxisLine(T,this.bounds,M[T].primalOffset,this.lineColor[T],this.lineWidth[T]*this.pixelRatio),this.lineMirror[T]&&this._lines.drawAxisLine(T,this.bounds,M[T].mirrorOffset,this.lineColor[T],this.lineWidth[T]*this.pixelRatio);var I=c(m,M[T].primalMinor),D=c(y,M[T].mirrorMinor),P=this.lineTickLength;for(L=0;L<3;++L){var R=A/r[5*L];I[L]*=P[L]*R,D[L]*=P[L]*R}this.lineTickEnable[T]&&this._lines.drawAxisTicks(T,M[T].primalOffset,I,this.lineTickColor[T],this.lineTickWidth[T]*this.pixelRatio),this.lineTickMirror[T]&&this._lines.drawAxisTicks(T,M[T].mirrorOffset,D,this.lineTickColor[T],this.lineTickWidth[T]*this.pixelRatio)}this._lines.unbind(),this._text.bind(r,n,i,this.pixelRatio);var F,B;function N(t){(B=[0,0,0])[t]=1}function j(t,e,r){var n=(t+1)%3,i=(t+2)%3,a=e[n],o=e[i],s=r[n],l=r[i];a>0&&l>0?N(n):a>0&&l<0?N(n):a<0&&l>0?N(n):a<0&&l<0?N(n):o>0&&s>0?N(i):o>0&&s<0?N(i):o<0&&s>0?N(i):o<0&&s<0&&N(i)}for(T=0;T<3;++T){var V=M[T].primalMinor,U=M[T].mirrorMinor,q=c(x,M[T].primalOffset);for(L=0;L<3;++L)this.lineTickEnable[T]&&(q[L]+=A*V[L]*Math.max(this.lineTickLength[L],0)/r[5*L]);var 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l=this.gl;l.enable(l.POLYGON_OFFSET_FILL),l.polygonOffset(1,2),this.shader.bind(),this.shader.uniforms={model:t,view:e,projection:r,bounds:n,enable:i,colors:a},this.vao.bind(),this.vao.draw(this.gl.TRIANGLES,36),this.vao.unbind(),l.disable(l.POLYGON_OFFSET_FILL)}},s.dispose=function(){this.vao.dispose(),this.buffer.dispose(),this.shader.dispose()}},{"./shaders":234,"gl-buffer":238,"gl-vao":320}],232:[function(t,e,r){"use strict";e.exports=function(t,e,r,a,p){i(s,e,t),i(s,r,s);for(var y=0,x=0;x<2;++x){u[2]=a[x][2];for(var b=0;b<2;++b){u[1]=a[b][1];for(var _=0;_<2;++_)u[0]=a[_][0],f(l[y],u,s),y+=1}}for(var w=-1,x=0;x<8;++x){for(var k=l[x][3],A=0;A<3;++A)c[x][A]=l[x][A]/k;p&&(c[x][2]*=-1),k<0&&(w<0?w=x:c[x][2]E&&(w|=1<E&&(w|=1<c[x][1]&&(R=x));for(var F=-1,x=0;x<3;++x){var B=R^1<c[N][0]&&(N=B)}}var j=g;j[0]=j[1]=j[2]=0,j[n.log2(F^R)]=R&F,j[n.log2(R^N)]=R&N;var V=7^N;V===w||V===P?(V=7^F,j[n.log2(N^V)]=V&N):j[n.log2(F^V)]=V&F;for(var U=v,q=w,T=0;T<3;++T)U[T]=q&1< HALF_PI) && (b <= ONE_AND_HALF_PI)) ?\n b - PI :\n b;\n}\n\nfloat look_horizontal_or_vertical(float a, float ratio) {\n // ratio controls the ratio between being horizontal to (vertical + horizontal)\n // if ratio is set to 0.5 then it is 50%, 50%.\n // when using a higher ratio e.g. 0.75 the result would\n // likely be more horizontal than vertical.\n\n float b = positive_angle(a);\n\n return\n (b < ( ratio) * HALF_PI) ? 0.0 :\n (b < (2.0 - ratio) * HALF_PI) ? -HALF_PI :\n (b < (2.0 + ratio) * HALF_PI) ? 0.0 :\n (b < (4.0 - ratio) * HALF_PI) ? HALF_PI :\n 0.0;\n}\n\nfloat roundTo(float a, float b) {\n return float(b * floor((a + 0.5 * b) / b));\n}\n\nfloat look_round_n_directions(float a, int n) {\n float b = positive_angle(a);\n float div = TWO_PI / float(n);\n float c = roundTo(b, div);\n return look_upwards(c);\n}\n\nfloat applyAlignOption(float rawAngle, float delta) {\n return\n (option > 2) ? look_round_n_directions(rawAngle + delta, option) : // option 3-n: round to n directions\n (option == 2) ? look_horizontal_or_vertical(rawAngle + delta, hv_ratio) : // horizontal or vertical\n (option == 1) ? rawAngle + delta : // use free angle, and flip to align with one direction of the axis\n (option == 0) ? look_upwards(rawAngle) : // use free angle, and stay upwards\n (option ==-1) ? 0.0 : // useful for backward compatibility, all texts remains horizontal\n rawAngle; // otherwise return back raw input angle\n}\n\nbool isAxisTitle = (axis.x == 0.0) &&\n (axis.y == 0.0) &&\n (axis.z == 0.0);\n\nvoid main() {\n //Compute world offset\n float axisDistance = position.z;\n vec3 dataPosition = axisDistance * axis + offset;\n\n float beta = angle; // i.e. user defined attributes for each tick\n\n float axisAngle;\n float clipAngle;\n float flip;\n\n if (enableAlign) {\n axisAngle = (isAxisTitle) ? HALF_PI :\n computeViewAngle(dataPosition, dataPosition + axis);\n clipAngle = computeViewAngle(dataPosition, dataPosition + alignDir);\n\n axisAngle += (sin(axisAngle) < 0.0) ? PI : 0.0;\n clipAngle += (sin(clipAngle) < 0.0) ? PI : 0.0;\n\n flip = (dot(vec2(cos(axisAngle), sin(axisAngle)),\n vec2(sin(clipAngle),-cos(clipAngle))) > 0.0) ? 1.0 : 0.0;\n\n beta += applyAlignOption(clipAngle, flip * PI);\n }\n\n //Compute plane offset\n vec2 planeCoord = position.xy * pixelScale;\n\n mat2 planeXform = scale * mat2(\n cos(beta), sin(beta),\n -sin(beta), cos(beta)\n );\n\n vec2 viewOffset = 2.0 * planeXform * planeCoord / resolution;\n\n //Compute clip position\n vec3 clipPosition = project(dataPosition);\n\n //Apply text offset in clip coordinates\n clipPosition += vec3(viewOffset, 0.0);\n\n //Done\n gl_Position = vec4(clipPosition, 1.0);\n}"]),l=n(["precision highp float;\n#define GLSLIFY 1\n\nuniform vec4 color;\nvoid main() {\n gl_FragColor = color;\n}"]);r.text=function(t){return i(t,s,l,null,[{name:"position",type:"vec3"}])};var c=n(["precision highp float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec3 normal;\n\nuniform mat4 model, view, projection;\nuniform vec3 enable;\nuniform vec3 bounds[2];\n\nvarying vec3 colorChannel;\n\nvoid main() {\n\n vec3 signAxis = sign(bounds[1] - bounds[0]);\n\n vec3 realNormal = signAxis * normal;\n\n if(dot(realNormal, enable) > 0.0) {\n vec3 minRange = min(bounds[0], bounds[1]);\n vec3 maxRange = max(bounds[0], bounds[1]);\n vec3 nPosition = mix(minRange, maxRange, 0.5 * (position + 1.0));\n gl_Position = projection * view * model * vec4(nPosition, 1.0);\n } else {\n gl_Position = vec4(0,0,0,0);\n }\n\n colorChannel = abs(realNormal);\n}"]),u=n(["precision highp float;\n#define GLSLIFY 1\n\nuniform vec4 colors[3];\n\nvarying vec3 colorChannel;\n\nvoid main() {\n gl_FragColor = colorChannel.x * colors[0] +\n colorChannel.y * colors[1] +\n colorChannel.z * colors[2];\n}"]);r.bg=function(t){return i(t,c,u,null,[{name:"position",type:"vec3"},{name:"normal",type:"vec3"}])}},{"gl-shader":298,glslify:402}],235:[function(t,e,r){(function(r){"use strict";e.exports=function(t,e,r,a,s,l){var u=n(t),h=i(t,[{buffer:u,size:3}]),f=o(t);f.attributes.position.location=0;var p=new c(t,f,u,h);return p.update(e,r,a,s,l),p};var n=t("gl-buffer"),i=t("gl-vao"),a=t("vectorize-text"),o=t("./shaders").text,s=window||r.global||{},l=s.__TEXT_CACHE||{};s.__TEXT_CACHE={};function c(t,e,r,n){this.gl=t,this.shader=e,this.buffer=r,this.vao=n,this.tickOffset=this.tickCount=this.labelOffset=this.labelCount=null}var u=c.prototype,h=[0,0];u.bind=function(t,e,r,n){this.vao.bind(),this.shader.bind();var i=this.shader.uniforms;i.model=t,i.view=e,i.projection=r,i.pixelScale=n,h[0]=this.gl.drawingBufferWidth,h[1]=this.gl.drawingBufferHeight,this.shader.uniforms.resolution=h},u.unbind=function(){this.vao.unbind()},u.update=function(t,e,r,n,i){var o=[];function s(t,e,r,n,i,s){var c=l[r];c||(c=l[r]={});var u=c[e];u||(u=c[e]=function(t,e){try{return a(t,e)}catch(e){return console.warn('error vectorizing text:"'+t+'" 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A=1/s;isFinite(y)&&!isNaN(y)||(y=1),o.vectorScale=y;var T=function(t,e,r){var i=n.create();return void 0!==t&&n.set(i,t,e,r),i}(0,1,0),M=t.coneSize||.5;t.absoluteConeSize&&(M=t.absoluteConeSize*A),o.coneScale=M;x=0;for(var S=0;x=1},x.isTransparent=function(){return this.opacity<1},x.pickSlots=1,x.setPickBase=function(t){this.pickId=t},x.highlight=function(t){if(t&&this.contourEnable){for(var e=f(this.cells,this.intensity,t.intensity),r=e.cells,n=e.vertexIds,i=e.vertexWeights,a=r.length,o=p.mallocFloat32(6*a),s=0,l=0;l0){var d=this.triShader;d.bind(),d.uniforms=s,this.triangleVAO.bind(),e.drawArrays(e.TRIANGLES,0,3*this.triangleCount),this.triangleVAO.unbind()}},x.drawPick=function(t){t=t||{};for(var 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e=t.value[0]+256*t.value[1]+65536*t.value[2],r=this.cells[e],n=this.positions[r[1]].slice(0,3);return{index:Math.floor(r[1]/48),position:n,dataCoordinate:n}},x.dispose=function(){this.texture.dispose(),this.triShader.dispose(),this.pickShader.dispose(),this.triangleVAO.dispose(),this.trianglePositions.dispose(),this.triangleVectors.dispose(),this.triangleColors.dispose(),this.triangleUVs.dispose(),this.triangleNormals.dispose(),this.triangleIds.dispose(),this.edgeVAO.dispose(),this.edgePositions.dispose(),this.edgeColors.dispose(),this.edgeUVs.dispose(),this.edgeIds.dispose(),this.pointVAO.dispose(),this.pointPositions.dispose(),this.pointColors.dispose(),this.pointUVs.dispose(),this.pointSizes.dispose(),this.pointIds.dispose(),this.contourVAO.dispose(),this.contourPositions.dispose()},e.exports=function(t,e){1===arguments.length&&(t=(e=t).gl);var r=e.triShader||function(t){var e=n(t,g.vertex,g.fragment,null,g.attributes);return 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y(t,l,r,s,c,h,v,f,p,d,m,x,k,_,w,A,T,C,M,S,E,L,z,a(t,[{buffer:z,type:t.FLOAT,size:3}]));return O.update(e),O}},{"./shaders":241,colormap:117,"gl-buffer":238,"gl-mat4/invert":262,"gl-mat4/multiply":264,"gl-shader":298,"gl-texture2d":315,"gl-vao":320,ndarray:443,normals:446,"simplicial-complex-contour":503,"typedarray-pool":530}],241:[function(t,e,r){var n=t("glslify"),i=n(["precision highp float;\n\nprecision highp float;\n#define GLSLIFY 1\n\nvec3 getOrthogonalVector(vec3 v) {\n // Return up-vector for only-z vector.\n // Return ax + by + cz = 0, a point that lies on the plane that has v as a normal and that isn't (0,0,0).\n // From the above if-statement we have ||a|| > 0 U ||b|| > 0.\n // Assign z = 0, x = -b, y = a:\n // a*-b + b*a + c*0 = -ba + ba + 0 = 0\n if (v.x*v.x > v.z*v.z || v.y*v.y > v.z*v.z) {\n return normalize(vec3(-v.y, v.x, 0.0));\n } else {\n return normalize(vec3(0.0, v.z, -v.y));\n }\n}\n\n// Calculate the cone vertex and normal at the given index.\n//\n// The returned vertex is for a cone with its top at origin and height of 1.0,\n// pointing in the direction of the vector attribute.\n//\n// Each cone is made up of a top vertex, a center base vertex and base perimeter vertices.\n// These vertices are used to make up the triangles of the cone by the following:\n// segment + 0 top vertex\n// segment + 1 perimeter vertex a+1\n// segment + 2 perimeter vertex a\n// segment + 3 center base vertex\n// segment + 4 perimeter vertex a\n// segment + 5 perimeter vertex a+1\n// Where segment is the number of the radial segment * 6 and a is the angle at that radial segment.\n// To go from index to segment, floor(index / 6)\n// To go from segment to angle, 2*pi * (segment/segmentCount)\n// To go from index to segment index, index - (segment*6)\n//\nvec3 getConePosition(vec3 d, float rawIndex, float coneOffset, out vec3 normal) {\n\n const float segmentCount = 8.0;\n\n float index = rawIndex - floor(rawIndex /\n (segmentCount * 6.0)) *\n (segmentCount * 6.0);\n\n float segment = floor(0.001 + index/6.0);\n float segmentIndex = index - (segment*6.0);\n\n normal = -normalize(d);\n\n if (segmentIndex > 2.99 && segmentIndex < 3.01) {\n return mix(vec3(0.0), -d, coneOffset);\n }\n\n float nextAngle = (\n (segmentIndex > 0.99 && segmentIndex < 1.01) ||\n (segmentIndex > 4.99 && segmentIndex < 5.01)\n ) ? 1.0 : 0.0;\n float angle = 2.0 * 3.14159 * ((segment + nextAngle) / segmentCount);\n\n vec3 v1 = mix(d, vec3(0.0), coneOffset);\n vec3 v2 = v1 - d;\n\n vec3 u = getOrthogonalVector(d);\n vec3 v = normalize(cross(u, d));\n\n vec3 x = u * cos(angle) * length(d)*0.25;\n vec3 y = v * sin(angle) * length(d)*0.25;\n vec3 v3 = v2 + x + y;\n if (segmentIndex < 3.0) {\n vec3 tx = u * sin(angle);\n vec3 ty = v * -cos(angle);\n vec3 tangent = tx + ty;\n normal = normalize(cross(v3 - v1, tangent));\n }\n\n if (segmentIndex == 0.0) {\n return mix(d, vec3(0.0), coneOffset);\n }\n return v3;\n}\n\nattribute vec3 vector;\nattribute vec4 color, position;\nattribute vec2 uv;\nuniform float vectorScale;\nuniform float coneScale;\n\nuniform float coneOffset;\n\nuniform mat4 model\n , view\n , projection\n , inverseModel;\nuniform vec3 eyePosition\n , lightPosition;\n\nvarying vec3 f_normal\n , f_lightDirection\n , f_eyeDirection\n , f_data\n , f_position;\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n // Scale the vector magnitude to stay constant with\n // model & view changes.\n vec3 normal;\n vec3 XYZ = getConePosition(mat3(model) * ((vectorScale * coneScale) * vector), position.w, coneOffset, normal);\n vec4 conePosition = model * vec4(position.xyz, 1.0) + vec4(XYZ, 0.0);\n\n //Lighting geometry parameters\n vec4 cameraCoordinate = view * conePosition;\n cameraCoordinate.xyz /= cameraCoordinate.w;\n f_lightDirection = lightPosition - cameraCoordinate.xyz;\n f_eyeDirection = eyePosition - cameraCoordinate.xyz;\n f_normal = normalize((vec4(normal,0.0) * inverseModel).xyz);\n\n // vec4 m_position = model * vec4(conePosition, 1.0);\n vec4 t_position = view * conePosition;\n gl_Position = projection * t_position;\n\n f_color = color;\n f_data = conePosition.xyz;\n f_position = position.xyz;\n f_uv = uv;\n}\n"]),a=n(["#extension GL_OES_standard_derivatives : enable\n\nprecision highp float;\n#define GLSLIFY 1\n\nfloat beckmannDistribution(float x, float roughness) {\n float NdotH = max(x, 0.0001);\n float cos2Alpha = NdotH * NdotH;\n float tan2Alpha = (cos2Alpha - 1.0) / cos2Alpha;\n float roughness2 = roughness * roughness;\n float denom = 3.141592653589793 * roughness2 * cos2Alpha * cos2Alpha;\n return exp(tan2Alpha / roughness2) / denom;\n}\n\nfloat cookTorranceSpecular(\n vec3 lightDirection,\n vec3 viewDirection,\n vec3 surfaceNormal,\n float roughness,\n float fresnel) {\n\n float VdotN = max(dot(viewDirection, surfaceNormal), 0.0);\n float LdotN = max(dot(lightDirection, surfaceNormal), 0.0);\n\n //Half angle vector\n vec3 H = normalize(lightDirection + viewDirection);\n\n //Geometric term\n float NdotH = max(dot(surfaceNormal, H), 0.0);\n float VdotH = max(dot(viewDirection, H), 0.000001);\n float LdotH = max(dot(lightDirection, H), 0.000001);\n float G1 = (2.0 * NdotH * VdotN) / VdotH;\n float G2 = (2.0 * NdotH * LdotN) / LdotH;\n float G = min(1.0, min(G1, G2));\n \n //Distribution term\n float D = beckmannDistribution(NdotH, roughness);\n\n //Fresnel term\n float F = pow(1.0 - VdotN, fresnel);\n\n //Multiply terms and done\n return G * F * D / max(3.14159265 * VdotN, 0.000001);\n}\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform vec3 clipBounds[2];\nuniform float roughness\n , fresnel\n , kambient\n , kdiffuse\n , kspecular\n , opacity;\nuniform sampler2D texture;\n\nvarying vec3 f_normal\n , f_lightDirection\n , f_eyeDirection\n , f_data\n , f_position;\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n if (outOfRange(clipBounds[0], clipBounds[1], f_position)) discard;\n vec3 N = normalize(f_normal);\n vec3 L = normalize(f_lightDirection);\n vec3 V = normalize(f_eyeDirection);\n\n if(gl_FrontFacing) {\n N = -N;\n }\n\n float specular = min(1.0, max(0.0, cookTorranceSpecular(L, V, N, roughness, fresnel)));\n float diffuse = min(kambient + kdiffuse * max(dot(N, L), 0.0), 1.0);\n\n vec4 surfaceColor = f_color * texture2D(texture, f_uv);\n vec4 litColor = surfaceColor.a * vec4(diffuse * surfaceColor.rgb + kspecular * vec3(1,1,1) * specular, 1.0);\n\n gl_FragColor = litColor * opacity;\n}\n"]),o=n(["precision highp float;\n\nprecision highp float;\n#define GLSLIFY 1\n\nvec3 getOrthogonalVector(vec3 v) {\n // Return up-vector for only-z vector.\n // Return ax + by + cz = 0, a point that lies on the plane that has v as a normal and that isn't (0,0,0).\n // From the above if-statement we have ||a|| > 0 U ||b|| > 0.\n // Assign z = 0, x = -b, y = a:\n // a*-b + b*a + c*0 = -ba + ba + 0 = 0\n if (v.x*v.x > v.z*v.z || v.y*v.y > v.z*v.z) {\n return normalize(vec3(-v.y, v.x, 0.0));\n } else {\n return normalize(vec3(0.0, v.z, -v.y));\n }\n}\n\n// Calculate the cone vertex and normal at the given index.\n//\n// The returned vertex is for a cone with its top at origin and height of 1.0,\n// pointing in the direction of the vector attribute.\n//\n// Each cone is made up of a top vertex, a center base vertex and base perimeter vertices.\n// These vertices are used to make up the triangles of the cone by the following:\n// segment + 0 top vertex\n// segment + 1 perimeter vertex a+1\n// segment + 2 perimeter vertex a\n// segment + 3 center base vertex\n// segment + 4 perimeter vertex a\n// segment + 5 perimeter vertex a+1\n// Where segment is the number of the radial segment * 6 and a is the angle at that radial segment.\n// To go from index to segment, floor(index / 6)\n// To go from segment to angle, 2*pi * (segment/segmentCount)\n// To go from index to segment index, index - (segment*6)\n//\nvec3 getConePosition(vec3 d, float rawIndex, float coneOffset, out vec3 normal) {\n\n const float segmentCount = 8.0;\n\n float index = rawIndex - floor(rawIndex /\n (segmentCount * 6.0)) *\n (segmentCount * 6.0);\n\n float segment = floor(0.001 + index/6.0);\n float segmentIndex = index - (segment*6.0);\n\n normal = -normalize(d);\n\n if (segmentIndex > 2.99 && segmentIndex < 3.01) {\n return mix(vec3(0.0), -d, coneOffset);\n }\n\n float nextAngle = (\n (segmentIndex > 0.99 && segmentIndex < 1.01) ||\n (segmentIndex > 4.99 && segmentIndex < 5.01)\n ) ? 1.0 : 0.0;\n float angle = 2.0 * 3.14159 * ((segment + nextAngle) / segmentCount);\n\n vec3 v1 = mix(d, vec3(0.0), coneOffset);\n vec3 v2 = v1 - d;\n\n vec3 u = getOrthogonalVector(d);\n vec3 v = normalize(cross(u, d));\n\n vec3 x = u * cos(angle) * length(d)*0.25;\n vec3 y = v * sin(angle) * length(d)*0.25;\n vec3 v3 = v2 + x + y;\n if (segmentIndex < 3.0) {\n vec3 tx = u * sin(angle);\n vec3 ty = v * -cos(angle);\n vec3 tangent = tx + ty;\n normal = normalize(cross(v3 - v1, tangent));\n }\n\n if (segmentIndex == 0.0) {\n return mix(d, vec3(0.0), coneOffset);\n }\n return v3;\n}\n\nattribute vec3 vector;\nattribute vec4 position;\nattribute vec4 id;\n\nuniform mat4 model, view, projection;\n\nuniform float vectorScale;\nuniform float coneScale;\nuniform float coneOffset;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n vec3 normal;\n vec3 XYZ = getConePosition(mat3(model) * ((vectorScale * coneScale) * vector), position.w, coneOffset, normal);\n vec4 conePosition = model * vec4(position.xyz, 1.0) + vec4(XYZ, 0.0);\n gl_Position = projection * view * conePosition;\n f_id = id;\n f_position = position.xyz;\n}\n"]),s=n(["precision highp float;\n#define GLSLIFY 1\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform vec3 clipBounds[2];\nuniform float pickId;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n if (outOfRange(clipBounds[0], clipBounds[1], f_position)) discard;\n\n gl_FragColor = vec4(pickId, f_id.xyz);\n}"]);r.meshShader={vertex:i,fragment:a,attributes:[{name:"position",type:"vec4"},{name:"normal",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"},{name:"vector",type:"vec3"}]},r.pickShader={vertex:o,fragment:s,attributes:[{name:"position",type:"vec4"},{name:"id",type:"vec4"},{name:"vector",type:"vec3"}]}},{glslify:402}],242:[function(t,e,r){e.exports={0:"NONE",1:"ONE",2:"LINE_LOOP",3:"LINE_STRIP",4:"TRIANGLES",5:"TRIANGLE_STRIP",6:"TRIANGLE_FAN",256:"DEPTH_BUFFER_BIT",512:"NEVER",513:"LESS",514:"EQUAL",515:"LEQUAL",516:"GREATER",517:"NOTEQUAL",518:"GEQUAL",519:"ALWAYS",768:"SRC_COLOR",769:"ONE_MINUS_SRC_COLOR",770:"SRC_ALPHA",771:"ONE_MINUS_SRC_ALPHA",772:"DST_ALPHA",773:"ONE_MINUS_DST_ALPHA",774:"DST_COLOR",775:"ONE_MINUS_DST_COLOR",776:"SRC_ALPHA_SATURATE",1024:"STENCIL_BUFFER_BIT",1028:"FRONT",1029:"BACK",1032:"FRONT_AND_BACK",1280:"INVALID_ENUM",1281:"INVALID_VALUE",1282:"INVALID_OPERATION",1285:"OUT_OF_MEMORY",1286:"INVALID_FRAMEBUFFER_OPERATION",2304:"CW",2305:"CCW",2849:"LINE_WIDTH",2884:"CULL_FACE",2885:"CULL_FACE_MODE",2886:"FRONT_FACE",2928:"DEPTH_RANGE",2929:"DEPTH_TEST",2930:"DEPTH_WRITEMASK",2931:"DEPTH_CLEAR_VALUE",2932:"DEPTH_FUNC",2960:"STENCIL_TEST",2961:"STENCIL_CLEAR_VALUE",2962:"STENCIL_FUNC",2963:"STENCIL_VALUE_MASK",2964:"STENCIL_FAIL",2965:"STENCIL_PASS_DEPTH_FAIL",2966:"STENCIL_PASS_DEPTH_PASS",2967:"STENCIL_REF",2968:"STENCIL_WRITEMASK",2978:"VIEWPORT",3024:"DITHER",3042:"BLEND",3088:"SCISSOR_BOX",3089:"SCISSOR_TEST",3106:"COLOR_CLEAR_VALUE",3107:"COLOR_WRITEMASK",3317:"UNPACK_ALIGNMENT",3333:"PACK_ALIGNMENT",3379:"MAX_TEXTURE_SIZE",3386:"MAX_VIEWPORT_DIMS",3408:"SUBPIXEL_BITS",3410:"RED_BITS",3411:"GREEN_BITS",3412:"BLUE_BITS",3413:"ALPHA_BITS",3414:"DEPTH_BITS",3415:"STENCIL_BITS",3553:"TEXTURE_2D",4352:"DONT_CARE",4353:"FASTEST",4354:"NICEST",5120:"BYTE",5121:"UNSIGNED_BYTE",5122:"SHORT",5123:"UNSIGNED_SHORT",5124:"INT",5125:"UNSIGNED_INT",5126:"FLOAT",5386:"INVERT",5890:"TEXTURE",6401:"STENCIL_INDEX",6402:"DEPTH_COMPONENT",6406:"ALPHA",6407:"RGB",6408:"RGBA",6409:"LUMINANCE",6410:"LUMINANCE_ALPHA",7680:"KEEP",7681:"REPLACE",7682:"INCR",7683:"DECR",7936:"VENDOR",7937:"RENDERER",7938:"VERSION",9728:"NEAREST",9729:"LINEAR",9984:"NEAREST_MIPMAP_NEAREST",9985:"LINEAR_MIPMAP_NEAREST",9986:"NEAREST_MIPMAP_LINEAR",9987:"LINEAR_MIPMAP_LINEAR",10240:"TEXTURE_MAG_FILTER",10241:"TEXTURE_MIN_FILTER",10242:"TEXTURE_WRAP_S",10243:"TEXTURE_WRAP_T",10497:"REPEAT",10752:"POLYGON_OFFSET_UNITS",16384:"COLOR_BUFFER_BIT",32769:"CONSTANT_COLOR",32770:"ONE_MINUS_CONSTANT_COLOR",32771:"CONSTANT_ALPHA",32772:"ONE_MINUS_CONSTANT_ALPHA",32773:"BLEND_COLOR",32774:"FUNC_ADD",32777:"BLEND_EQUATION_RGB",32778:"FUNC_SUBTRACT",32779:"FUNC_REVERSE_SUBTRACT",32819:"UNSIGNED_SHORT_4_4_4_4",32820:"UNSIGNED_SHORT_5_5_5_1",32823:"POLYGON_OFFSET_FILL",32824:"POLYGON_OFFSET_FACTOR",32854:"RGBA4",32855:"RGB5_A1",32873:"TEXTURE_BINDING_2D",32926:"SAMPLE_ALPHA_TO_COVERAGE",32928:"SAMPLE_COVERAGE",32936:"SAMPLE_BUFFERS",32937:"SAMPLES",32938:"SAMPLE_COVERAGE_VALUE",32939:"SAMPLE_COVERAGE_INVERT",32968:"BLEND_DST_RGB",32969:"BLEND_SRC_RGB",32970:"BLEND_DST_ALPHA",32971:"BLEND_SRC_ALPHA",33071:"CLAMP_TO_EDGE",33170:"GENERATE_MIPMAP_HINT",33189:"DEPTH_COMPONENT16",33306:"DEPTH_STENCIL_ATTACHMENT",33635:"UNSIGNED_SHORT_5_6_5",33648:"MIRRORED_REPEAT",33901:"ALIASED_POINT_SIZE_RANGE",33902:"ALIASED_LINE_WIDTH_RANGE",33984:"TEXTURE0",33985:"TEXTURE1",33986:"TEXTURE2",33987:"TEXTURE3",33988:"TEXTURE4",33989:"TEXTURE5",33990:"TEXTURE6",33991:"TEXTURE7",33992:"TEXTURE8",33993:"TEXTURE9",33994:"TEXTURE10",33995:"TEXTURE11",33996:"TEXTURE12",33997:"TEXTURE13",33998:"TEXTURE14",33999:"TEXTURE15",34000:"TEXTURE16",34001:"TEXTURE17",34002:"TEXTURE18",34003:"TEXTURE19",34004:"TEXTURE20",34005:"TEXTURE21",34006:"TEXTURE22",34007:"TEXTURE23",34008:"TEXTURE24",34009:"TEXTURE25",34010:"TEXTURE26",34011:"TEXTURE27",34012:"TEXTURE28",34013:"TEXTURE29",34014:"TEXTURE30",34015:"TEXTURE31",34016:"ACTIVE_TEXTURE",34024:"MAX_RENDERBUFFER_SIZE",34041:"DEPTH_STENCIL",34055:"INCR_WRAP",34056:"DECR_WRAP",34067:"TEXTURE_CUBE_MAP",34068:"TEXTURE_BINDING_CUBE_MAP",34069:"TEXTURE_CUBE_MAP_POSITIVE_X",34070:"TEXTURE_CUBE_MAP_NEGATIVE_X",34071:"TEXTURE_CUBE_MAP_POSITIVE_Y",34072:"TEXTURE_CUBE_MAP_NEGATIVE_Y",34073:"TEXTURE_CUBE_MAP_POSITIVE_Z",34074:"TEXTURE_CUBE_MAP_NEGATIVE_Z",34076:"MAX_CUBE_MAP_TEXTURE_SIZE",34338:"VERTEX_ATTRIB_ARRAY_ENABLED",34339:"VERTEX_ATTRIB_ARRAY_SIZE",34340:"VERTEX_ATTRIB_ARRAY_STRIDE",34341:"VERTEX_ATTRIB_ARRAY_TYPE",34342:"CURRENT_VERTEX_ATTRIB",34373:"VERTEX_ATTRIB_ARRAY_POINTER",34466:"NUM_COMPRESSED_TEXTURE_FORMATS",34467:"COMPRESSED_TEXTURE_FORMATS",34660:"BUFFER_SIZE",34661:"BUFFER_USAGE",34816:"STENCIL_BACK_FUNC",34817:"STENCIL_BACK_FAIL",34818:"STENCIL_BACK_PASS_DEPTH_FAIL",34819:"STENCIL_BACK_PASS_DEPTH_PASS",34877:"BLEND_EQUATION_ALPHA",34921:"MAX_VERTEX_ATTRIBS",34922:"VERTEX_ATTRIB_ARRAY_NORMALIZED",34930:"MAX_TEXTURE_IMAGE_UNITS",34962:"ARRAY_BUFFER",34963:"ELEMENT_ARRAY_BUFFER",34964:"ARRAY_BUFFER_BINDING",34965:"ELEMENT_ARRAY_BUFFER_BINDING",34975:"VERTEX_ATTRIB_ARRAY_BUFFER_BINDING",35040:"STREAM_DRAW",35044:"STATIC_DRAW",35048:"DYNAMIC_DRAW",35632:"FRAGMENT_SHADER",35633:"VERTEX_SHADER",35660:"MAX_VERTEX_TEXTURE_IMAGE_UNITS",35661:"MAX_COMBINED_TEXTURE_IMAGE_UNITS",35663:"SHADER_TYPE",35664:"FLOAT_VEC2",35665:"FLOAT_VEC3",35666:"FLOAT_VEC4",35667:"INT_VEC2",35668:"INT_VEC3",35669:"INT_VEC4",35670:"BOOL",35671:"BOOL_VEC2",35672:"BOOL_VEC3",35673:"BOOL_VEC4",35674:"FLOAT_MAT2",35675:"FLOAT_MAT3",35676:"FLOAT_MAT4",35678:"SAMPLER_2D",35680:"SAMPLER_CUBE",35712:"DELETE_STATUS",35713:"COMPILE_STATUS",35714:"LINK_STATUS",35715:"VALIDATE_STATUS",35716:"INFO_LOG_LENGTH",35717:"ATTACHED_SHADERS",35718:"ACTIVE_UNIFORMS",35719:"ACTIVE_UNIFORM_MAX_LENGTH",35720:"SHADER_SOURCE_LENGTH",35721:"ACTIVE_ATTRIBUTES",35722:"ACTIVE_ATTRIBUTE_MAX_LENGTH",35724:"SHADING_LANGUAGE_VERSION",35725:"CURRENT_PROGRAM",36003:"STENCIL_BACK_REF",36004:"STENCIL_BACK_VALUE_MASK",36005:"STENCIL_BACK_WRITEMASK",36006:"FRAMEBUFFER_BINDING",36007:"RENDERBUFFER_BINDING",36048:"FRAMEBUFFER_ATTACHMENT_OBJECT_TYPE",36049:"FRAMEBUFFER_ATTACHMENT_OBJECT_NAME",36050:"FRAMEBUFFER_ATTACHMENT_TEXTURE_LEVEL",36051:"FRAMEBUFFER_ATTACHMENT_TEXTURE_CUBE_MAP_FACE",36053:"FRAMEBUFFER_COMPLETE",36054:"FRAMEBUFFER_INCOMPLETE_ATTACHMENT",36055:"FRAMEBUFFER_INCOMPLETE_MISSING_ATTACHMENT",36057:"FRAMEBUFFER_INCOMPLETE_DIMENSIONS",36061:"FRAMEBUFFER_UNSUPPORTED",36064:"COLOR_ATTACHMENT0",36096:"DEPTH_ATTACHMENT",36128:"STENCIL_ATTACHMENT",36160:"FRAMEBUFFER",36161:"RENDERBUFFER",36162:"RENDERBUFFER_WIDTH",36163:"RENDERBUFFER_HEIGHT",36164:"RENDERBUFFER_INTERNAL_FORMAT",36168:"STENCIL_INDEX8",36176:"RENDERBUFFER_RED_SIZE",36177:"RENDERBUFFER_GREEN_SIZE",36178:"RENDERBUFFER_BLUE_SIZE",36179:"RENDERBUFFER_ALPHA_SIZE",36180:"RENDERBUFFER_DEPTH_SIZE",36181:"RENDERBUFFER_STENCIL_SIZE",36194:"RGB565",36336:"LOW_FLOAT",36337:"MEDIUM_FLOAT",36338:"HIGH_FLOAT",36339:"LOW_INT",36340:"MEDIUM_INT",36341:"HIGH_INT",36346:"SHADER_COMPILER",36347:"MAX_VERTEX_UNIFORM_VECTORS",36348:"MAX_VARYING_VECTORS",36349:"MAX_FRAGMENT_UNIFORM_VECTORS",37440:"UNPACK_FLIP_Y_WEBGL",37441:"UNPACK_PREMULTIPLY_ALPHA_WEBGL",37442:"CONTEXT_LOST_WEBGL",37443:"UNPACK_COLORSPACE_CONVERSION_WEBGL",37444:"BROWSER_DEFAULT_WEBGL"}},{}],243:[function(t,e,r){var n=t("./1.0/numbers");e.exports=function(t){return n[t]}},{"./1.0/numbers":242}],244:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e),o=i(e,[{buffer:r,type:e.FLOAT,size:3,offset:0,stride:40},{buffer:r,type:e.FLOAT,size:4,offset:12,stride:40},{buffer:r,type:e.FLOAT,size:3,offset:28,stride:40}]),l=a(e);l.attributes.position.location=0,l.attributes.color.location=1,l.attributes.offset.location=2;var c=new s(e,r,o,l);return c.update(t),c};var n=t("gl-buffer"),i=t("gl-vao"),a=t("./shaders/index"),o=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function s(t,e,r,n){this.gl=t,this.shader=n,this.buffer=e,this.vao=r,this.pixelRatio=1,this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.lineWidth=[1,1,1],this.capSize=[10,10,10],this.lineCount=[0,0,0],this.lineOffset=[0,0,0],this.opacity=1,this.hasAlpha=!1}var l=s.prototype;function c(t,e){for(var r=0;r<3;++r)t[0][r]=Math.min(t[0][r],e[r]),t[1][r]=Math.max(t[1][r],e[r])}l.isOpaque=function(){return!this.hasAlpha},l.isTransparent=function(){return this.hasAlpha},l.drawTransparent=l.draw=function(t){var e=this.gl,r=this.shader.uniforms;this.shader.bind();var n=r.view=t.view||o,i=r.projection=t.projection||o;r.model=t.model||o,r.clipBounds=this.clipBounds,r.opacity=this.opacity;var a=n[12],s=n[13],l=n[14],c=n[15],u=(t._ortho||!1?2:1)*this.pixelRatio*(i[3]*a+i[7]*s+i[11]*l+i[15]*c)/e.drawingBufferHeight;this.vao.bind();for(var h=0;h<3;++h)e.lineWidth(this.lineWidth[h]*this.pixelRatio),r.capSize=this.capSize[h]*u,this.lineCount[h]&&e.drawArrays(e.LINES,this.lineOffset[h],this.lineCount[h]);this.vao.unbind()};var u=function(){for(var t=new Array(3),e=0;e<3;++e){for(var r=[],n=1;n<=2;++n)for(var i=-1;i<=1;i+=2){var a=[0,0,0];a[(n+e)%3]=i,r.push(a)}t[e]=r}return t}();function h(t,e,r,n){for(var i=u[n],a=0;a0)(g=u.slice())[s]+=p[1][s],i.push(u[0],u[1],u[2],d[0],d[1],d[2],d[3],0,0,0,g[0],g[1],g[2],d[0],d[1],d[2],d[3],0,0,0),c(this.bounds,g),o+=2+h(i,g,d,s)}}this.lineCount[s]=o-this.lineOffset[s]}this.buffer.update(i)}},l.dispose=function(){this.shader.dispose(),this.buffer.dispose(),this.vao.dispose()}},{"./shaders/index":245,"gl-buffer":238,"gl-vao":320}],245:[function(t,e,r){"use strict";var n=t("glslify"),i=t("gl-shader"),a=n(["precision highp float;\n#define GLSLIFY 1\n\nattribute vec3 position, offset;\nattribute vec4 color;\nuniform mat4 model, view, projection;\nuniform float capSize;\nvarying vec4 fragColor;\nvarying vec3 fragPosition;\n\nvoid main() {\n vec4 worldPosition = model * vec4(position, 1.0);\n worldPosition = (worldPosition / worldPosition.w) + vec4(capSize * offset, 0.0);\n gl_Position = projection * view * worldPosition;\n fragColor = color;\n fragPosition = position;\n}"]),o=n(["precision highp float;\n#define GLSLIFY 1\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform vec3 clipBounds[2];\nuniform float opacity;\nvarying vec3 fragPosition;\nvarying vec4 fragColor;\n\nvoid main() {\n if (\n outOfRange(clipBounds[0], clipBounds[1], fragPosition) ||\n fragColor.a * opacity == 0.\n ) discard;\n\n gl_FragColor = opacity * fragColor;\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"offset",type:"vec3"}])}},{"gl-shader":298,glslify:402}],246:[function(t,e,r){"use strict";var n=t("gl-texture2d");e.exports=function(t,e,r,n){i||(i=t.FRAMEBUFFER_UNSUPPORTED,a=t.FRAMEBUFFER_INCOMPLETE_ATTACHMENT,o=t.FRAMEBUFFER_INCOMPLETE_DIMENSIONS,s=t.FRAMEBUFFER_INCOMPLETE_MISSING_ATTACHMENT);var c=t.getExtension("WEBGL_draw_buffers");!l&&c&&function(t,e){var r=t.getParameter(e.MAX_COLOR_ATTACHMENTS_WEBGL);l=new Array(r+1);for(var n=0;n<=r;++n){for(var i=new Array(r),a=0;au||r<0||r>u)throw new Error("gl-fbo: Parameters are too large for FBO");var h=1;if("color"in(n=n||{})){if((h=Math.max(0|n.color,0))<0)throw new Error("gl-fbo: Must specify a nonnegative number of colors");if(h>1){if(!c)throw new Error("gl-fbo: Multiple draw buffer extension not supported");if(h>t.getParameter(c.MAX_COLOR_ATTACHMENTS_WEBGL))throw new Error("gl-fbo: Context does not support "+h+" draw buffers")}}var f=t.UNSIGNED_BYTE,p=t.getExtension("OES_texture_float");if(n.float&&h>0){if(!p)throw new Error("gl-fbo: Context does not support floating point textures");f=t.FLOAT}else n.preferFloat&&h>0&&p&&(f=t.FLOAT);var g=!0;"depth"in n&&(g=!!n.depth);var v=!1;"stencil"in n&&(v=!!n.stencil);return new d(t,e,r,f,h,g,v,c)};var i,a,o,s,l=null;function c(t){return[t.getParameter(t.FRAMEBUFFER_BINDING),t.getParameter(t.RENDERBUFFER_BINDING),t.getParameter(t.TEXTURE_BINDING_2D)]}function u(t,e){t.bindFramebuffer(t.FRAMEBUFFER,e[0]),t.bindRenderbuffer(t.RENDERBUFFER,e[1]),t.bindTexture(t.TEXTURE_2D,e[2])}function h(t){switch(t){case i:throw new Error("gl-fbo: Framebuffer unsupported");case a:throw new Error("gl-fbo: Framebuffer incomplete attachment");case o:throw new Error("gl-fbo: Framebuffer incomplete dimensions");case s:throw new Error("gl-fbo: Framebuffer incomplete missing attachment");default:throw new Error("gl-fbo: Framebuffer failed for unspecified reason")}}function f(t,e,r,i,a,o){if(!i)return null;var s=n(t,e,r,a,i);return s.magFilter=t.NEAREST,s.minFilter=t.NEAREST,s.mipSamples=1,s.bind(),t.framebufferTexture2D(t.FRAMEBUFFER,o,t.TEXTURE_2D,s.handle,0),s}function p(t,e,r,n,i){var a=t.createRenderbuffer();return t.bindRenderbuffer(t.RENDERBUFFER,a),t.renderbufferStorage(t.RENDERBUFFER,n,e,r),t.framebufferRenderbuffer(t.FRAMEBUFFER,i,t.RENDERBUFFER,a),a}function d(t,e,r,n,i,a,o,s){this.gl=t,this._shape=[0|e,0|r],this._destroyed=!1,this._ext=s,this.color=new Array(i);for(var d=0;d1&&s.drawBuffersWEBGL(l[o]);var y=r.getExtension("WEBGL_depth_texture");y?d?t.depth=f(r,i,a,y.UNSIGNED_INT_24_8_WEBGL,r.DEPTH_STENCIL,r.DEPTH_STENCIL_ATTACHMENT):g&&(t.depth=f(r,i,a,r.UNSIGNED_SHORT,r.DEPTH_COMPONENT,r.DEPTH_ATTACHMENT)):g&&d?t._depth_rb=p(r,i,a,r.DEPTH_STENCIL,r.DEPTH_STENCIL_ATTACHMENT):g?t._depth_rb=p(r,i,a,r.DEPTH_COMPONENT16,r.DEPTH_ATTACHMENT):d&&(t._depth_rb=p(r,i,a,r.STENCIL_INDEX,r.STENCIL_ATTACHMENT));var x=r.checkFramebufferStatus(r.FRAMEBUFFER);if(x!==r.FRAMEBUFFER_COMPLETE){for(t._destroyed=!0,r.bindFramebuffer(r.FRAMEBUFFER,null),r.deleteFramebuffer(t.handle),t.handle=null,t.depth&&(t.depth.dispose(),t.depth=null),t._depth_rb&&(r.deleteRenderbuffer(t._depth_rb),t._depth_rb=null),m=0;mi||r<0||r>i)throw new Error("gl-fbo: Can't resize FBO, invalid dimensions");t._shape[0]=e,t._shape[1]=r;for(var a=c(n),o=0;o>8*p&255;this.pickOffset=r,i.bind();var d=i.uniforms;d.viewTransform=t,d.pickOffset=e,d.shape=this.shape;var g=i.attributes;return this.positionBuffer.bind(),g.position.pointer(),this.weightBuffer.bind(),g.weight.pointer(s.UNSIGNED_BYTE,!1),this.idBuffer.bind(),g.pickId.pointer(s.UNSIGNED_BYTE,!1),s.drawArrays(s.TRIANGLES,0,o),r+this.shape[0]*this.shape[1]}}}(),h.pick=function(t,e,r){var n=this.pickOffset,i=this.shape[0]*this.shape[1];if(r=n+i)return null;var a=r-n,o=this.xData,s=this.yData;return{object:this,pointId:a,dataCoord:[o[a%this.shape[0]],s[a/this.shape[0]|0]]}},h.update=function(t){var e=(t=t||{}).shape||[0,0],r=t.x||i(e[0]),o=t.y||i(e[1]),s=t.z||new Float32Array(e[0]*e[1]);this.xData=r,this.yData=o;var l=t.colorLevels||[0],c=t.colorValues||[0,0,0,1],u=l.length,h=this.bounds,p=h[0]=r[0],d=h[1]=o[0],g=1/((h[2]=r[r.length-1])-p),v=1/((h[3]=o[o.length-1])-d),m=e[0],y=e[1];this.shape=[m,y];var x=(m-1)*(y-1)*(f.length>>>1);this.numVertices=x;for(var b=a.mallocUint8(4*x),_=a.mallocFloat32(2*x),w=a.mallocUint8(2*x),k=a.mallocUint32(x),A=0,T=0;T max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform vec3 clipBounds[2];\nuniform sampler2D dashTexture;\nuniform float dashScale;\nuniform float opacity;\n\nvarying vec3 worldPosition;\nvarying float pixelArcLength;\nvarying vec4 fragColor;\n\nvoid main() {\n if (\n outOfRange(clipBounds[0], clipBounds[1], worldPosition) ||\n fragColor.a * opacity == 0.\n ) discard;\n\n float dashWeight = texture2D(dashTexture, vec2(dashScale * pixelArcLength, 0)).r;\n if(dashWeight < 0.5) {\n discard;\n }\n gl_FragColor = fragColor * opacity;\n}\n"]),s=n(["precision highp float;\n#define GLSLIFY 1\n\n#define FLOAT_MAX 1.70141184e38\n#define FLOAT_MIN 1.17549435e-38\n\nlowp vec4 encode_float_1604150559(highp float v) {\n highp float av = abs(v);\n\n //Handle special cases\n if(av < FLOAT_MIN) {\n return vec4(0.0, 0.0, 0.0, 0.0);\n } else if(v > FLOAT_MAX) {\n return vec4(127.0, 128.0, 0.0, 0.0) / 255.0;\n } else if(v < -FLOAT_MAX) {\n return vec4(255.0, 128.0, 0.0, 0.0) / 255.0;\n }\n\n highp vec4 c = vec4(0,0,0,0);\n\n //Compute exponent and mantissa\n highp float e = floor(log2(av));\n highp float m = av * pow(2.0, -e) - 1.0;\n \n //Unpack mantissa\n c[1] = floor(128.0 * m);\n m -= c[1] / 128.0;\n c[2] = floor(32768.0 * m);\n m -= c[2] / 32768.0;\n c[3] = floor(8388608.0 * m);\n \n //Unpack exponent\n highp float ebias = e + 127.0;\n c[0] = floor(ebias / 2.0);\n ebias -= c[0] * 2.0;\n c[1] += floor(ebias) * 128.0; \n\n //Unpack sign bit\n c[0] += 128.0 * step(0.0, -v);\n\n //Scale back to range\n return c / 255.0;\n}\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform float pickId;\nuniform vec3 clipBounds[2];\n\nvarying vec3 worldPosition;\nvarying float pixelArcLength;\nvarying vec4 fragColor;\n\nvoid main() {\n if (outOfRange(clipBounds[0], clipBounds[1], worldPosition)) discard;\n\n gl_FragColor = vec4(pickId/255.0, encode_float_1604150559(pixelArcLength).xyz);\n}"]),l=[{name:"position",type:"vec3"},{name:"nextPosition",type:"vec3"},{name:"arcLength",type:"float"},{name:"lineWidth",type:"float"},{name:"color",type:"vec4"}];r.createShader=function(t){return i(t,a,o,null,l)},r.createPickShader=function(t){return i(t,a,s,null,l)}},{"gl-shader":298,glslify:402}],252:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl||t.scene&&t.scene.gl,r=u(e);r.attributes.position.location=0,r.attributes.nextPosition.location=1,r.attributes.arcLength.location=2,r.attributes.lineWidth.location=3,r.attributes.color.location=4;var o=h(e);o.attributes.position.location=0,o.attributes.nextPosition.location=1,o.attributes.arcLength.location=2,o.attributes.lineWidth.location=3,o.attributes.color.location=4;for(var s=n(e),c=i(e,[{buffer:s,size:3,offset:0,stride:48},{buffer:s,size:3,offset:12,stride:48},{buffer:s,size:1,offset:24,stride:48},{buffer:s,size:1,offset:28,stride:48},{buffer:s,size:4,offset:32,stride:48}]),f=l(new Array(1024),[256,1,4]),p=0;p<1024;++p)f.data[p]=255;var d=a(e,f);d.wrap=e.REPEAT;var g=new v(e,r,o,s,c,d);return g.update(t),g};var n=t("gl-buffer"),i=t("gl-vao"),a=t("gl-texture2d"),o=t("glsl-read-float"),s=t("binary-search-bounds"),l=t("ndarray"),c=t("./lib/shaders"),u=c.createShader,h=c.createPickShader,f=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function p(t,e){for(var r=0,n=0;n<3;++n){var i=t[n]-e[n];r+=i*i}return Math.sqrt(r)}function d(t){for(var e=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],r=0;r<3;++r)e[0][r]=Math.max(t[0][r],e[0][r]),e[1][r]=Math.min(t[1][r],e[1][r]);return e}function g(t,e,r,n){this.arcLength=t,this.position=e,this.index=r,this.dataCoordinate=n}function v(t,e,r,n,i,a){this.gl=t,this.shader=e,this.pickShader=r,this.buffer=n,this.vao=i,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.points=[],this.arcLength=[],this.vertexCount=0,this.bounds=[[0,0,0],[0,0,0]],this.pickId=0,this.lineWidth=1,this.texture=a,this.dashScale=1,this.opacity=1,this.hasAlpha=!1,this.dirty=!0,this.pixelRatio=1}var m=v.prototype;m.isTransparent=function(){return this.hasAlpha},m.isOpaque=function(){return!this.hasAlpha},m.pickSlots=1,m.setPickBase=function(t){this.pickId=t},m.drawTransparent=m.draw=function(t){if(this.vertexCount){var e=this.gl,r=this.shader,n=this.vao;r.bind(),r.uniforms={model:t.model||f,view:t.view||f,projection:t.projection||f,clipBounds:d(this.clipBounds),dashTexture:this.texture.bind(),dashScale:this.dashScale/this.arcLength[this.arcLength.length-1],opacity:this.opacity,screenShape:[e.drawingBufferWidth,e.drawingBufferHeight],pixelRatio:this.pixelRatio},n.bind(),n.draw(e.TRIANGLE_STRIP,this.vertexCount),n.unbind()}},m.drawPick=function(t){if(this.vertexCount){var e=this.gl,r=this.pickShader,n=this.vao;r.bind(),r.uniforms={model:t.model||f,view:t.view||f,projection:t.projection||f,pickId:this.pickId,clipBounds:d(this.clipBounds),screenShape:[e.drawingBufferWidth,e.drawingBufferHeight],pixelRatio:this.pixelRatio},n.bind(),n.draw(e.TRIANGLE_STRIP,this.vertexCount),n.unbind()}},m.update=function(t){var e,r;this.dirty=!0;var n=!!t.connectGaps;"dashScale"in t&&(this.dashScale=t.dashScale),this.hasAlpha=!1,"opacity"in t&&(this.opacity=+t.opacity,this.opacity<1&&(this.hasAlpha=!0));var i=[],a=[],o=[],c=0,u=0,h=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],f=t.position||t.positions;if(f){var d=t.color||t.colors||[0,0,0,1],g=t.lineWidth||1,v=!1;t:for(e=1;e0){for(var w=0;w<24;++w)i.push(i[i.length-12]);u+=2,v=!0}continue t}h[0][r]=Math.min(h[0][r],b[r],_[r]),h[1][r]=Math.max(h[1][r],b[r],_[r])}Array.isArray(d[0])?(m=d.length>e-1?d[e-1]:d.length>0?d[d.length-1]:[0,0,0,1],y=d.length>e?d[e]:d.length>0?d[d.length-1]:[0,0,0,1]):m=y=d,3===m.length&&(m=[m[0],m[1],m[2],1]),3===y.length&&(y=[y[0],y[1],y[2],1]),!this.hasAlpha&&m[3]<1&&(this.hasAlpha=!0),x=Array.isArray(g)?g.length>e-1?g[e-1]:g.length>0?g[g.length-1]:[0,0,0,1]:g;var k=c;if(c+=p(b,_),v){for(r=0;r<2;++r)i.push(b[0],b[1],b[2],_[0],_[1],_[2],k,x,m[0],m[1],m[2],m[3]);u+=2,v=!1}i.push(b[0],b[1],b[2],_[0],_[1],_[2],k,x,m[0],m[1],m[2],m[3],b[0],b[1],b[2],_[0],_[1],_[2],k,-x,m[0],m[1],m[2],m[3],_[0],_[1],_[2],b[0],b[1],b[2],c,-x,y[0],y[1],y[2],y[3],_[0],_[1],_[2],b[0],b[1],b[2],c,x,y[0],y[1],y[2],y[3]),u+=4}}if(this.buffer.update(i),a.push(c),o.push(f[f.length-1].slice()),this.bounds=h,this.vertexCount=u,this.points=o,this.arcLength=a,"dashes"in t){var A=t.dashes.slice();for(A.unshift(0),e=1;e1.0001)return null;v+=g[u]}if(Math.abs(v-1)>.001)return null;return[h,function(t,e){for(var r=[0,0,0],n=0;n max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform vec3 clipBounds[2];\nuniform float roughness\n , fresnel\n , kambient\n , kdiffuse\n , kspecular;\nuniform sampler2D texture;\n\nvarying vec3 f_normal\n , f_lightDirection\n , f_eyeDirection\n , f_data;\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n if (f_color.a == 0.0 ||\n outOfRange(clipBounds[0], clipBounds[1], f_data)\n ) discard;\n\n vec3 N = normalize(f_normal);\n vec3 L = normalize(f_lightDirection);\n vec3 V = normalize(f_eyeDirection);\n\n if(gl_FrontFacing) {\n N = -N;\n }\n\n float specular = min(1.0, max(0.0, cookTorranceSpecular(L, V, N, roughness, fresnel)));\n //float specular = max(0.0, beckmann(L, V, N, roughness)); // used in gl-surface3d\n\n float diffuse = min(kambient + kdiffuse * max(dot(N, L), 0.0), 1.0);\n\n vec4 surfaceColor = vec4(f_color.rgb, 1.0) * texture2D(texture, f_uv);\n vec4 litColor = surfaceColor.a * vec4(diffuse * surfaceColor.rgb + kspecular * vec3(1,1,1) * specular, 1.0);\n\n gl_FragColor = litColor * f_color.a;\n}\n"]),o=n(["precision highp float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 uv;\n\nuniform mat4 model, view, projection;\n\nvarying vec4 f_color;\nvarying vec3 f_data;\nvarying vec2 f_uv;\n\nvoid main() {\n gl_Position = projection * view * model * vec4(position, 1.0);\n f_color = color;\n f_data = position;\n f_uv = uv;\n}"]),s=n(["precision highp float;\n#define GLSLIFY 1\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform vec3 clipBounds[2];\nuniform sampler2D texture;\nuniform float opacity;\n\nvarying vec4 f_color;\nvarying vec3 f_data;\nvarying vec2 f_uv;\n\nvoid main() {\n if (outOfRange(clipBounds[0], clipBounds[1], f_data)) discard;\n\n gl_FragColor = f_color * texture2D(texture, f_uv) * opacity;\n}"]),l=n(["precision highp float;\n#define GLSLIFY 1\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 uv;\nattribute float pointSize;\n\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n if (outOfRange(clipBounds[0], clipBounds[1], position)) {\n\n gl_Position = vec4(0.0, 0.0 ,0.0 ,0.0);\n } else {\n gl_Position = projection * view * model * vec4(position, 1.0);\n }\n gl_PointSize = pointSize;\n f_color = color;\n f_uv = uv;\n}"]),c=n(["precision highp float;\n#define GLSLIFY 1\n\nuniform sampler2D texture;\nuniform float opacity;\n\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n vec2 pointR = gl_PointCoord.xy - vec2(0.5, 0.5);\n if(dot(pointR, pointR) > 0.25) {\n discard;\n }\n gl_FragColor = f_color * texture2D(texture, f_uv) * opacity;\n}"]),u=n(["precision highp float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 id;\n\nuniform mat4 model, view, projection;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n gl_Position = projection * view * model * vec4(position, 1.0);\n f_id = id;\n f_position = position;\n}"]),h=n(["precision highp float;\n#define GLSLIFY 1\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform vec3 clipBounds[2];\nuniform float pickId;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n if (outOfRange(clipBounds[0], clipBounds[1], f_position)) discard;\n\n gl_FragColor = vec4(pickId, f_id.xyz);\n}"]),f=n(["precision highp float;\n#define GLSLIFY 1\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nattribute vec3 position;\nattribute float pointSize;\nattribute vec4 id;\n\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n if (outOfRange(clipBounds[0], clipBounds[1], position)) {\n\n gl_Position = vec4(0.0, 0.0, 0.0, 0.0);\n } else {\n gl_Position = projection * view * model * vec4(position, 1.0);\n gl_PointSize = pointSize;\n }\n f_id = id;\n f_position = position;\n}"]),p=n(["precision highp float;\n#define GLSLIFY 1\n\nattribute vec3 position;\n\nuniform mat4 model, view, projection;\n\nvoid main() {\n gl_Position = projection * view * model * vec4(position, 1.0);\n}"]),d=n(["precision highp float;\n#define GLSLIFY 1\n\nuniform vec3 contourColor;\n\nvoid main() {\n gl_FragColor = vec4(contourColor, 1.0);\n}\n"]);r.meshShader={vertex:i,fragment:a,attributes:[{name:"position",type:"vec3"},{name:"normal",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"}]},r.wireShader={vertex:o,fragment:s,attributes:[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"}]},r.pointShader={vertex:l,fragment:c,attributes:[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"},{name:"pointSize",type:"float"}]},r.pickShader={vertex:u,fragment:h,attributes:[{name:"position",type:"vec3"},{name:"id",type:"vec4"}]},r.pointPickShader={vertex:f,fragment:h,attributes:[{name:"position",type:"vec3"},{name:"pointSize",type:"float"},{name:"id",type:"vec4"}]},r.contourShader={vertex:p,fragment:d,attributes:[{name:"position",type:"vec3"}]}},{glslify:402}],277:[function(t,e,r){"use strict";var n=t("gl-shader"),i=t("gl-buffer"),a=t("gl-vao"),o=t("gl-texture2d"),s=t("normals"),l=t("gl-mat4/multiply"),c=t("gl-mat4/invert"),u=t("ndarray"),h=t("colormap"),f=t("simplicial-complex-contour"),p=t("typedarray-pool"),d=t("./lib/shaders"),g=t("./lib/closest-point"),v=d.meshShader,m=d.wireShader,y=d.pointShader,x=d.pickShader,b=d.pointPickShader,_=d.contourShader,w=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function k(t,e,r,n,i,a,o,s,l,c,u,h,f,p,d,g,v,m,y,x,b,_,k,A,T,M,S){this.gl=t,this.pixelRatio=1,this.cells=[],this.positions=[],this.intensity=[],this.texture=e,this.dirty=!0,this.triShader=r,this.lineShader=n,this.pointShader=i,this.pickShader=a,this.pointPickShader=o,this.contourShader=s,this.trianglePositions=l,this.triangleColors=u,this.triangleNormals=f,this.triangleUVs=h,this.triangleIds=c,this.triangleVAO=p,this.triangleCount=0,this.lineWidth=1,this.edgePositions=d,this.edgeColors=v,this.edgeUVs=m,this.edgeIds=g,this.edgeVAO=y,this.edgeCount=0,this.pointPositions=x,this.pointColors=_,this.pointUVs=k,this.pointSizes=A,this.pointIds=b,this.pointVAO=T,this.pointCount=0,this.contourLineWidth=1,this.contourPositions=M,this.contourVAO=S,this.contourCount=0,this.contourColor=[0,0,0],this.contourEnable=!0,this.pickId=1,this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.lightPosition=[1e5,1e5,0],this.ambientLight=.8,this.diffuseLight=.8,this.specularLight=2,this.roughness=.5,this.fresnel=1.5,this.opacity=1,this.hasAlpha=!1,this.opacityscale=!1,this._model=w,this._view=w,this._projection=w,this._resolution=[1,1]}var A=k.prototype;function T(t,e){if(!e)return 1;if(!e.length)return 1;for(var r=0;rt&&r>0){var n=(e[r][0]-t)/(e[r][0]-e[r-1][0]);return e[r][1]*(1-n)+n*e[r-1][1]}}return 1}function M(t){var e=n(t,y.vertex,y.fragment);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e.attributes.pointSize.location=4,e}function S(t){var e=n(t,x.vertex,x.fragment);return e.attributes.position.location=0,e.attributes.id.location=1,e}function E(t){var e=n(t,b.vertex,b.fragment);return e.attributes.position.location=0,e.attributes.id.location=1,e.attributes.pointSize.location=4,e}function C(t){var e=n(t,_.vertex,_.fragment);return e.attributes.position.location=0,e}A.isOpaque=function(){return!this.hasAlpha},A.isTransparent=function(){return this.hasAlpha},A.pickSlots=1,A.setPickBase=function(t){this.pickId=t},A.highlight=function(t){if(t&&this.contourEnable){for(var e=f(this.cells,this.intensity,t.intensity),r=e.cells,n=e.vertexIds,i=e.vertexWeights,a=r.length,o=p.mallocFloat32(6*a),s=0,l=0;l0&&((h=this.triShader).bind(),h.uniforms=s,this.triangleVAO.bind(),e.drawArrays(e.TRIANGLES,0,3*this.triangleCount),this.triangleVAO.unbind());this.edgeCount>0&&this.lineWidth>0&&((h=this.lineShader).bind(),h.uniforms=s,this.edgeVAO.bind(),e.lineWidth(this.lineWidth*this.pixelRatio),e.drawArrays(e.LINES,0,2*this.edgeCount),this.edgeVAO.unbind());this.pointCount>0&&((h=this.pointShader).bind(),h.uniforms=s,this.pointVAO.bind(),e.drawArrays(e.POINTS,0,this.pointCount),this.pointVAO.unbind());this.contourEnable&&this.contourCount>0&&this.contourLineWidth>0&&((h=this.contourShader).bind(),h.uniforms=s,this.contourVAO.bind(),e.drawArrays(e.LINES,0,this.contourCount),this.contourVAO.unbind())},A.drawPick=function(t){t=t||{};for(var e=this.gl,r=t.model||w,n=t.view||w,i=t.projection||w,a=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],o=0;o<3;++o)a[0][o]=Math.max(a[0][o],this.clipBounds[0][o]),a[1][o]=Math.min(a[1][o],this.clipBounds[1][o]);this._model=[].slice.call(r),this._view=[].slice.call(n),this._projection=[].slice.call(i),this._resolution=[e.drawingBufferWidth,e.drawingBufferHeight];var s,l={model:r,view:n,projection:i,clipBounds:a,pickId:this.pickId/255};((s=this.pickShader).bind(),s.uniforms=l,this.triangleCount>0&&(this.triangleVAO.bind(),e.drawArrays(e.TRIANGLES,0,3*this.triangleCount),this.triangleVAO.unbind()),this.edgeCount>0&&(this.edgeVAO.bind(),e.lineWidth(this.lineWidth*this.pixelRatio),e.drawArrays(e.LINES,0,2*this.edgeCount),this.edgeVAO.unbind()),this.pointCount>0)&&((s=this.pointPickShader).bind(),s.uniforms=l,this.pointVAO.bind(),e.drawArrays(e.POINTS,0,this.pointCount),this.pointVAO.unbind())},A.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;for(var e=t.value[0]+256*t.value[1]+65536*t.value[2],r=this.cells[e],n=this.positions,i=new Array(r.length),a=0;ai[A]&&(r.uniforms.dataAxis=c,r.uniforms.screenOffset=u,r.uniforms.color=v[t],r.uniforms.angle=m[t],a.drawArrays(a.TRIANGLES,i[A],i[T]-i[A]))),y[t]&&k&&(u[1^t]-=M*p*x[t],r.uniforms.dataAxis=h,r.uniforms.screenOffset=u,r.uniforms.color=b[t],r.uniforms.angle=_[t],a.drawArrays(a.TRIANGLES,w,k)),u[1^t]=M*s[2+(1^t)]-1,d[t+2]&&(u[1^t]+=M*p*g[t+2],Ai[A]&&(r.uniforms.dataAxis=c,r.uniforms.screenOffset=u,r.uniforms.color=v[t+2],r.uniforms.angle=m[t+2],a.drawArrays(a.TRIANGLES,i[A],i[T]-i[A]))),y[t+2]&&k&&(u[1^t]+=M*p*x[t+2],r.uniforms.dataAxis=h,r.uniforms.screenOffset=u,r.uniforms.color=b[t+2],r.uniforms.angle=_[t+2],a.drawArrays(a.TRIANGLES,w,k))}),g.drawTitle=function(){var t=[0,0],e=[0,0];return function(){var r=this.plot,n=this.shader,i=r.gl,a=r.screenBox,o=r.titleCenter,s=r.titleAngle,l=r.titleColor,c=r.pixelRatio;if(this.titleCount){for(var u=0;u<2;++u)e[u]=2*(o[u]*c-a[u])/(a[2+u]-a[u])-1;n.bind(),n.uniforms.dataAxis=t,n.uniforms.screenOffset=e,n.uniforms.angle=s,n.uniforms.color=l,i.drawArrays(i.TRIANGLES,this.titleOffset,this.titleCount)}}}(),g.bind=(f=[0,0],p=[0,0],d=[0,0],function(){var t=this.plot,e=this.shader,r=t._tickBounds,n=t.dataBox,i=t.screenBox,a=t.viewBox;e.bind();for(var o=0;o<2;++o){var s=r[o],l=r[o+2]-s,c=.5*(n[o+2]+n[o]),u=n[o+2]-n[o],h=a[o],g=a[o+2]-h,v=i[o],m=i[o+2]-v;p[o]=2*l/u*g/m,f[o]=2*(s-c)/u*g/m}d[1]=2*t.pixelRatio/(i[3]-i[1]),d[0]=d[1]*(i[3]-i[1])/(i[2]-i[0]),e.uniforms.dataScale=p,e.uniforms.dataShift=f,e.uniforms.textScale=d,this.vbo.bind(),e.attributes.textCoordinate.pointer()}),g.update=function(t){var e,r,n,i,o,s=[],l=t.ticks,c=t.bounds;for(o=0;o<2;++o){var u=[Math.floor(s.length/3)],h=[-1/0],f=l[o];for(e=0;e=0){var g=e[d]-n[d]*(e[d+2]-e[d])/(n[d+2]-n[d]);0===d?o.drawLine(g,e[1],g,e[3],p[d],f[d]):o.drawLine(e[0],g,e[2],g,p[d],f[d])}}for(d=0;d=0;--t)this.objects[t].dispose();this.objects.length=0;for(t=this.overlays.length-1;t>=0;--t)this.overlays[t].dispose();this.overlays.length=0,this.gl=null},c.addObject=function(t){this.objects.indexOf(t)<0&&(this.objects.push(t),this.setDirty())},c.removeObject=function(t){for(var e=this.objects,r=0;rMath.abs(e))c.rotate(a,0,0,-t*r*Math.PI*d.rotateSpeed/window.innerWidth);else if(!d._ortho){var o=-d.zoomSpeed*i*e/window.innerHeight*(a-c.lastT())/20;c.pan(a,0,0,h*(Math.exp(o)-1))}}},!0)},d.enableMouseListeners(),d};var n=t("right-now"),i=t("3d-view"),a=t("mouse-change"),o=t("mouse-wheel"),s=t("mouse-event-offset"),l=t("has-passive-events")},{"3d-view":48,"has-passive-events":404,"mouse-change":428,"mouse-event-offset":429,"mouse-wheel":431,"right-now":489}],286:[function(t,e,r){var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\nattribute vec2 position;\nvarying vec2 uv;\nvoid main() {\n uv = position;\n gl_Position = vec4(position, 0, 1);\n}"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform sampler2D accumBuffer;\nvarying vec2 uv;\n\nvoid main() {\n vec4 accum = texture2D(accumBuffer, 0.5 * (uv + 1.0));\n gl_FragColor = min(vec4(1,1,1,1), accum);\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec2"}])}},{"gl-shader":298,glslify:402}],287:[function(t,e,r){"use strict";var n=t("./camera.js"),i=t("gl-axes3d"),a=t("gl-axes3d/properties"),o=t("gl-spikes3d"),s=t("gl-select-static"),l=t("gl-fbo"),c=t("a-big-triangle"),u=t("mouse-change"),h=t("mouse-wheel"),f=t("gl-mat4/perspective"),p=t("gl-mat4/ortho"),d=t("./lib/shader"),g=t("is-mobile")({tablet:!0});function v(){this.mouse=[-1,-1],this.screen=null,this.distance=1/0,this.index=null,this.dataCoordinate=null,this.dataPosition=null,this.object=null,this.data=null}function m(t){var e=Math.round(Math.log(Math.abs(t))/Math.log(10));if(e<0){var r=Math.round(Math.pow(10,-e));return Math.ceil(t*r)/r}if(e>0){r=Math.round(Math.pow(10,e));return Math.ceil(t/r)*r}return Math.ceil(t)}function y(t){return"boolean"!=typeof t||t}e.exports={createScene:function(t){(t=t||{}).camera=t.camera||{};var e=t.canvas;if(!e)if(e=document.createElement("canvas"),t.container){var r=t.container;r.appendChild(e)}else document.body.appendChild(e);var x=t.gl;x||(x=function(t,e){var r=null;try{(r=t.getContext("webgl",e))||(r=t.getContext("experimental-webgl",e))}catch(t){return null}return r}(e,t.glOptions||{premultipliedAlpha:!0,antialias:!0,preserveDrawingBuffer:g}));if(!x)throw new Error("webgl not supported");var b=t.bounds||[[-10,-10,-10],[10,10,10]],_=new v,w=l(x,[x.drawingBufferWidth,x.drawingBufferHeight],{preferFloat:!g}),k=d(x),A=t.cameraObject&&!0===t.cameraObject._ortho||t.camera.projection&&"orthographic"===t.camera.projection.type||!1,T={eye:t.camera.eye||[2,0,0],center:t.camera.center||[0,0,0],up:t.camera.up||[0,1,0],zoomMin:t.camera.zoomMax||.1,zoomMax:t.camera.zoomMin||100,mode:t.camera.mode||"turntable",_ortho:A},M=t.axes||{},S=i(x,M);S.enable=!M.disable;var E=t.spikes||{},C=o(x,E),L=[],z=[],O=[],I=[],D=!0,P=!0,R=new Array(16),F=new Array(16),B={view:null,projection:R,model:F,_ortho:!1},P=!0,N=[x.drawingBufferWidth,x.drawingBufferHeight],j=t.cameraObject||n(e,T),V={gl:x,contextLost:!1,pixelRatio:t.pixelRatio||1,canvas:e,selection:_,camera:j,axes:S,axesPixels:null,spikes:C,bounds:b,objects:L,shape:N,aspect:t.aspectRatio||[1,1,1],pickRadius:t.pickRadius||10,zNear:t.zNear||.01,zFar:t.zFar||1e3,fovy:t.fovy||Math.PI/4,clearColor:t.clearColor||[0,0,0,0],autoResize:y(t.autoResize),autoBounds:y(t.autoBounds),autoScale:!!t.autoScale,autoCenter:y(t.autoCenter),clipToBounds:y(t.clipToBounds),snapToData:!!t.snapToData,onselect:t.onselect||null,onrender:t.onrender||null,onclick:t.onclick||null,cameraParams:B,oncontextloss:null,mouseListener:null,_stopped:!1},U=[x.drawingBufferWidth/V.pixelRatio|0,x.drawingBufferHeight/V.pixelRatio|0];function q(){if(!V._stopped&&V.autoResize){var t=e.parentNode,r=1,n=1;t&&t!==document.body?(r=t.clientWidth,n=t.clientHeight):(r=window.innerWidth,n=window.innerHeight);var i=0|Math.ceil(r*V.pixelRatio),a=0|Math.ceil(n*V.pixelRatio);if(i!==e.width||a!==e.height){e.width=i,e.height=a;var o=e.style;o.position=o.position||"absolute",o.left="0px",o.top="0px",o.width=r+"px",o.height=n+"px",D=!0}}}V.autoResize&&q();function H(){for(var t=L.length,e=I.length,r=0;r0&&0===O[e-1];)O.pop(),I.pop().dispose()}function G(){if(V.contextLost)return!0;x.isContextLost()&&(V.contextLost=!0,V.mouseListener.enabled=!1,V.selection.object=null,V.oncontextloss&&V.oncontextloss())}window.addEventListener("resize",q),V.update=function(t){V._stopped||(t=t||{},D=!0,P=!0)},V.add=function(t){V._stopped||(t.axes=S,L.push(t),z.push(-1),D=!0,P=!0,H())},V.remove=function(t){if(!V._stopped){var e=L.indexOf(t);e<0||(L.splice(e,1),z.pop(),D=!0,P=!0,H())}},V.dispose=function(){if(!V._stopped&&(V._stopped=!0,window.removeEventListener("resize",q),e.removeEventListener("webglcontextlost",G),V.mouseListener.enabled=!1,!V.contextLost)){S.dispose(),C.dispose();for(var t=0;te?1.1:1/1.1;V.aspect[0]*=r,V.aspect[1]*=r,V.aspect[2]*=r,V.redraw()}},!0),V._mouseRotating=!1,V._prevButtons=0,V.enableMouseListeners=function(){V.mouseListener=u(e,function(t,e,r){if(!V._stopped){var n=I.length,i=L.length,a=_.object;_.distance=1/0,_.mouse[0]=e,_.mouse[1]=r,_.object=null,_.screen=null,_.dataCoordinate=_.dataPosition=null;var o=!1;if(t&&V._prevButtons)V._mouseRotating=!0;else{V._mouseRotating&&(P=!0),V._mouseRotating=!1;for(var s=0;s_.distance)continue;for(var c=0;c 1.0) {\n discard;\n }\n baseColor = mix(borderColor, color, step(radius, centerFraction));\n gl_FragColor = vec4(baseColor.rgb * baseColor.a, baseColor.a);\n }\n}\n"]),r.pickVertex=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\nattribute vec4 pickId;\n\nuniform mat3 matrix;\nuniform float pointSize;\nuniform vec4 pickOffset;\n\nvarying vec4 fragId;\n\nvoid main() {\n vec3 hgPosition = matrix * vec3(position, 1);\n gl_Position = vec4(hgPosition.xy, 0, hgPosition.z);\n gl_PointSize = pointSize;\n\n vec4 id = pickId + pickOffset;\n id.y += floor(id.x / 256.0);\n id.x -= floor(id.x / 256.0) * 256.0;\n\n id.z += floor(id.y / 256.0);\n id.y -= floor(id.y / 256.0) * 256.0;\n\n id.w += floor(id.z / 256.0);\n id.z -= floor(id.z / 256.0) * 256.0;\n\n fragId = id;\n}\n"]),r.pickFragment=n(["precision mediump float;\n#define GLSLIFY 1\n\nvarying vec4 fragId;\n\nvoid main() {\n float radius = length(2.0 * gl_PointCoord.xy - 1.0);\n if(radius > 1.0) {\n discard;\n }\n gl_FragColor = fragId / 255.0;\n}\n"])},{glslify:402}],289:[function(t,e,r){"use strict";var n=t("gl-shader"),i=t("gl-buffer"),a=t("typedarray-pool"),o=t("./lib/shader");function s(t,e,r,n,i){this.plot=t,this.offsetBuffer=e,this.pickBuffer=r,this.shader=n,this.pickShader=i,this.sizeMin=.5,this.sizeMinCap=2,this.sizeMax=20,this.areaRatio=1,this.pointCount=0,this.color=[1,0,0,1],this.borderColor=[0,0,0,1],this.blend=!1,this.pickOffset=0,this.points=null}e.exports=function(t,e){var r=t.gl,a=i(r),l=i(r),c=n(r,o.pointVertex,o.pointFragment),u=n(r,o.pickVertex,o.pickFragment),h=new s(t,a,l,c,u);return h.update(e),t.addObject(h),h};var l,c,u=s.prototype;u.dispose=function(){this.shader.dispose(),this.pickShader.dispose(),this.offsetBuffer.dispose(),this.pickBuffer.dispose(),this.plot.removeObject(this)},u.update=function(t){var e;function r(e,r){return e in t?t[e]:r}t=t||{},this.sizeMin=r("sizeMin",.5),this.sizeMax=r("sizeMax",20),this.color=r("color",[1,0,0,1]).slice(),this.areaRatio=r("areaRatio",1),this.borderColor=r("borderColor",[0,0,0,1]).slice(),this.blend=r("blend",!1);var n=t.positions.length>>>1,i=t.positions instanceof Float32Array,o=t.idToIndex instanceof Int32Array&&t.idToIndex.length>=n,s=t.positions,l=i?s:a.mallocFloat32(s.length),c=o?t.idToIndex:a.mallocInt32(n);if(i||l.set(s),!o)for(l.set(s),e=0;e>>1;for(r=0;r=e[0]&&a<=e[2]&&o>=e[1]&&o<=e[3]&&n++}return n}(this.points,i),u=this.plot.pickPixelRatio*Math.max(Math.min(this.sizeMinCap,this.sizeMin),Math.min(this.sizeMax,this.sizeMax/Math.pow(s,.33333)));l[0]=2/a,l[4]=2/o,l[6]=-2*i[0]/a-1,l[7]=-2*i[1]/o-1,this.offsetBuffer.bind(),r.bind(),r.attributes.position.pointer(),r.uniforms.matrix=l,r.uniforms.color=this.color,r.uniforms.borderColor=this.borderColor,r.uniforms.pointCloud=u<5,r.uniforms.pointSize=u,r.uniforms.centerFraction=Math.min(1,Math.max(0,Math.sqrt(1-this.areaRatio))),e&&(c[0]=255&t,c[1]=t>>8&255,c[2]=t>>16&255,c[3]=t>>24&255,this.pickBuffer.bind(),r.attributes.pickId.pointer(n.UNSIGNED_BYTE),r.uniforms.pickOffset=c,this.pickOffset=t);var h=n.getParameter(n.BLEND),f=n.getParameter(n.DITHER);return h&&!this.blend&&n.disable(n.BLEND),f&&n.disable(n.DITHER),n.drawArrays(n.POINTS,0,this.pointCount),h&&!this.blend&&n.enable(n.BLEND),f&&n.enable(n.DITHER),t+this.pointCount}),u.draw=u.unifiedDraw,u.drawPick=u.unifiedDraw,u.pick=function(t,e,r){var n=this.pickOffset,i=this.pointCount;if(r=n+i)return null;var a=r-n,o=this.points;return{object:this,pointId:a,dataCoord:[o[2*a],o[2*a+1]]}}},{"./lib/shader":288,"gl-buffer":238,"gl-shader":298,"typedarray-pool":530}],290:[function(t,e,r){e.exports=function(t,e,r,n){var i,a,o,s,l,c=e[0],u=e[1],h=e[2],f=e[3],p=r[0],d=r[1],g=r[2],v=r[3];(a=c*p+u*d+h*g+f*v)<0&&(a=-a,p=-p,d=-d,g=-g,v=-v);1-a>1e-6?(i=Math.acos(a),o=Math.sin(i),s=Math.sin((1-n)*i)/o,l=Math.sin(n*i)/o):(s=1-n,l=n);return t[0]=s*c+l*p,t[1]=s*u+l*d,t[2]=s*h+l*g,t[3]=s*f+l*v,t}},{}],291:[function(t,e,r){"use strict";e.exports=function(t){return t||0===t?t.toString():""}},{}],292:[function(t,e,r){"use strict";var n=t("vectorize-text");e.exports=function(t,e,r){var a=i[e];a||(a=i[e]={});if(t in a)return a[t];var o={textAlign:"center",textBaseline:"middle",lineHeight:1,font:e,lineSpacing:1.25,styletags:{breaklines:!0,bolds:!0,italics:!0,subscripts:!0,superscripts:!0},triangles:!0},s=n(t,o);o.triangles=!1;var l,c,u=n(t,o);if(r&&1!==r){for(l=0;l max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform vec4 highlightId;\nuniform float highlightScale;\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n if (outOfRange(clipBounds[0], clipBounds[1], position)) {\n\n gl_Position = vec4(0,0,0,0);\n } else {\n float scale = 1.0;\n if(distance(highlightId, id) < 0.0001) {\n scale = highlightScale;\n }\n\n vec4 worldPosition = model * vec4(position, 1);\n vec4 viewPosition = view * worldPosition;\n viewPosition = viewPosition / viewPosition.w;\n vec4 clipPosition = projection * (viewPosition + scale * vec4(glyph.x, -glyph.y, 0, 0));\n\n gl_Position = clipPosition;\n interpColor = color;\n pickId = id;\n dataCoordinate = position;\n }\n}"]),o=i(["precision highp float;\n#define GLSLIFY 1\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform mat4 model, view, projection;\nuniform vec2 screenSize;\nuniform vec3 clipBounds[2];\nuniform float highlightScale, pixelRatio;\nuniform vec4 highlightId;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n if (outOfRange(clipBounds[0], clipBounds[1], position)) {\n\n gl_Position = vec4(0,0,0,0);\n } else {\n float scale = pixelRatio;\n if(distance(highlightId.bgr, id.bgr) < 0.001) {\n scale *= highlightScale;\n }\n\n vec4 worldPosition = model * vec4(position, 1.0);\n vec4 viewPosition = view * worldPosition;\n vec4 clipPosition = projection * viewPosition;\n clipPosition /= clipPosition.w;\n\n gl_Position = clipPosition + vec4(screenSize * scale * vec2(glyph.x, -glyph.y), 0.0, 0.0);\n interpColor = color;\n pickId = id;\n dataCoordinate = position;\n }\n}"]),s=i(["precision highp float;\n#define GLSLIFY 1\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform float highlightScale;\nuniform vec4 highlightId;\nuniform vec3 axes[2];\nuniform mat4 model, view, projection;\nuniform vec2 screenSize;\nuniform vec3 clipBounds[2];\nuniform float scale, pixelRatio;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n if (outOfRange(clipBounds[0], clipBounds[1], position)) {\n\n gl_Position = vec4(0,0,0,0);\n } else {\n float lscale = pixelRatio * scale;\n if(distance(highlightId, id) < 0.0001) {\n lscale *= highlightScale;\n }\n\n vec4 clipCenter = projection * view * model * vec4(position, 1);\n vec3 dataPosition = position + 0.5*lscale*(axes[0] * glyph.x + axes[1] * glyph.y) * clipCenter.w * screenSize.y;\n vec4 clipPosition = projection * view * model * vec4(dataPosition, 1);\n\n gl_Position = clipPosition;\n interpColor = color;\n pickId = id;\n dataCoordinate = dataPosition;\n }\n}\n"]),l=i(["precision highp float;\n#define GLSLIFY 1\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform vec3 fragClipBounds[2];\nuniform float opacity;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n if (\n outOfRange(fragClipBounds[0], fragClipBounds[1], dataCoordinate) ||\n interpColor.a * opacity == 0.\n ) discard;\n gl_FragColor = interpColor * opacity;\n}\n"]),c=i(["precision highp float;\n#define GLSLIFY 1\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform vec3 fragClipBounds[2];\nuniform float pickGroup;\n\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n if (outOfRange(fragClipBounds[0], fragClipBounds[1], dataCoordinate)) discard;\n\n gl_FragColor = vec4(pickGroup, pickId.bgr);\n}"]),u=[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"glyph",type:"vec2"},{name:"id",type:"vec4"}],h={vertex:a,fragment:l,attributes:u},f={vertex:o,fragment:l,attributes:u},p={vertex:s,fragment:l,attributes:u},d={vertex:a,fragment:c,attributes:u},g={vertex:o,fragment:c,attributes:u},v={vertex:s,fragment:c,attributes:u};function m(t,e){var r=n(t,e),i=r.attributes;return i.position.location=0,i.color.location=1,i.glyph.location=2,i.id.location=3,r}r.createPerspective=function(t){return m(t,h)},r.createOrtho=function(t){return m(t,f)},r.createProject=function(t){return m(t,p)},r.createPickPerspective=function(t){return m(t,d)},r.createPickOrtho=function(t){return m(t,g)},r.createPickProject=function(t){return m(t,v)}},{"gl-shader":298,glslify:402}],294:[function(t,e,r){"use strict";var n=t("is-string-blank"),i=t("gl-buffer"),a=t("gl-vao"),o=t("typedarray-pool"),s=t("gl-mat4/multiply"),l=t("./lib/shaders"),c=t("./lib/glyphs"),u=t("./lib/get-simple-string"),h=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function f(t,e){var r=t[0],n=t[1],i=t[2],a=t[3];return t[0]=e[0]*r+e[4]*n+e[8]*i+e[12]*a,t[1]=e[1]*r+e[5]*n+e[9]*i+e[13]*a,t[2]=e[2]*r+e[6]*n+e[10]*i+e[14]*a,t[3]=e[3]*r+e[7]*n+e[11]*i+e[15]*a,t}function p(t,e,r,n){return f(n,n),f(n,n),f(n,n)}function d(t,e){this.index=t,this.dataCoordinate=this.position=e}function g(t){return!0===t?1:t>1?1:t}function v(t,e,r,n,i,a,o,s,l,c,u,h){this.gl=t,this.pixelRatio=1,this.shader=e,this.orthoShader=r,this.projectShader=n,this.pointBuffer=i,this.colorBuffer=a,this.glyphBuffer=o,this.idBuffer=s,this.vao=l,this.vertexCount=0,this.lineVertexCount=0,this.opacity=1,this.hasAlpha=!1,this.lineWidth=0,this.projectScale=[2/3,2/3,2/3],this.projectOpacity=[1,1,1],this.projectHasAlpha=!1,this.pickId=0,this.pickPerspectiveShader=c,this.pickOrthoShader=u,this.pickProjectShader=h,this.points=[],this._selectResult=new d(0,[0,0,0]),this.useOrtho=!0,this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.axesProject=[!0,!0,!0],this.axesBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.highlightId=[1,1,1,1],this.highlightScale=2,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.dirty=!0}e.exports=function(t){var e=t.gl,r=l.createPerspective(e),n=l.createOrtho(e),o=l.createProject(e),s=l.createPickPerspective(e),c=l.createPickOrtho(e),u=l.createPickProject(e),h=i(e),f=i(e),p=i(e),d=i(e),g=a(e,[{buffer:h,size:3,type:e.FLOAT},{buffer:f,size:4,type:e.FLOAT},{buffer:p,size:2,type:e.FLOAT},{buffer:d,size:4,type:e.UNSIGNED_BYTE,normalized:!0}]),m=new v(e,r,n,o,h,f,p,d,g,s,c,u);return m.update(t),m};var m=v.prototype;m.pickSlots=1,m.setPickBase=function(t){this.pickId=t},m.isTransparent=function(){if(this.hasAlpha)return!0;for(var t=0;t<3;++t)if(this.axesProject[t]&&this.projectHasAlpha)return!0;return!1},m.isOpaque=function(){if(!this.hasAlpha)return!0;for(var t=0;t<3;++t)if(this.axesProject[t]&&!this.projectHasAlpha)return!0;return!1};var y=[0,0],x=[0,0,0],b=[0,0,0],_=[0,0,0,1],w=[0,0,0,1],k=h.slice(),A=[0,0,0],T=[[0,0,0],[0,0,0]];function M(t){return t[0]=t[1]=t[2]=0,t}function S(t,e){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t[3]=1,t}function E(t,e,r,n){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t[r]=n,t}function C(t,e,r,n){var i,a=e.axesProject,o=e.gl,l=t.uniforms,c=r.model||h,u=r.view||h,f=r.projection||h,d=e.axesBounds,g=function(t){for(var e=T,r=0;r<2;++r)for(var n=0;n<3;++n)e[r][n]=Math.max(Math.min(t[r][n],1e8),-1e8);return e}(e.clipBounds);i=e.axes&&e.axes.lastCubeProps?e.axes.lastCubeProps.axis:[1,1,1],y[0]=2/o.drawingBufferWidth,y[1]=2/o.drawingBufferHeight,t.bind(),l.view=u,l.projection=f,l.screenSize=y,l.highlightId=e.highlightId,l.highlightScale=e.highlightScale,l.clipBounds=g,l.pickGroup=e.pickId/255,l.pixelRatio=n;for(var v=0;v<3;++v)if(a[v]){l.scale=e.projectScale[v],l.opacity=e.projectOpacity[v];for(var m=k,C=0;C<16;++C)m[C]=0;for(C=0;C<4;++C)m[5*C]=1;m[5*v]=0,i[v]<0?m[12+v]=d[0][v]:m[12+v]=d[1][v],s(m,c,m),l.model=m;var L=(v+1)%3,z=(v+2)%3,O=M(x),I=M(b);O[L]=1,I[z]=1;var D=p(0,0,0,S(_,O)),P=p(0,0,0,S(w,I));if(Math.abs(D[1])>Math.abs(P[1])){var R=D;D=P,P=R,R=O,O=I,I=R;var F=L;L=z,z=F}D[0]<0&&(O[L]=-1),P[1]>0&&(I[z]=-1);var B=0,N=0;for(C=0;C<4;++C)B+=Math.pow(c[4*L+C],2),N+=Math.pow(c[4*z+C],2);O[L]/=Math.sqrt(B),I[z]/=Math.sqrt(N),l.axes[0]=O,l.axes[1]=I,l.fragClipBounds[0]=E(A,g[0],v,-1e8),l.fragClipBounds[1]=E(A,g[1],v,1e8),e.vao.bind(),e.vao.draw(o.TRIANGLES,e.vertexCount),e.lineWidth>0&&(o.lineWidth(e.lineWidth*n),e.vao.draw(o.LINES,e.lineVertexCount,e.vertexCount)),e.vao.unbind()}}var L=[[-1e8,-1e8,-1e8],[1e8,1e8,1e8]];function z(t,e,r,n,i,a,o){var s=r.gl;if((a===r.projectHasAlpha||o)&&C(e,r,n,i),a===r.hasAlpha||o){t.bind();var l=t.uniforms;l.model=n.model||h,l.view=n.view||h,l.projection=n.projection||h,y[0]=2/s.drawingBufferWidth,y[1]=2/s.drawingBufferHeight,l.screenSize=y,l.highlightId=r.highlightId,l.highlightScale=r.highlightScale,l.fragClipBounds=L,l.clipBounds=r.axes.bounds,l.opacity=r.opacity,l.pickGroup=r.pickId/255,l.pixelRatio=i,r.vao.bind(),r.vao.draw(s.TRIANGLES,r.vertexCount),r.lineWidth>0&&(s.lineWidth(r.lineWidth*i),r.vao.draw(s.LINES,r.lineVertexCount,r.vertexCount)),r.vao.unbind()}}function O(t,e,r,i){var a;a=Array.isArray(t)?e=this.pointCount||e<0)return null;var r=this.points[e],n=this._selectResult;n.index=e;for(var i=0;i<3;++i)n.position[i]=n.dataCoordinate[i]=r[i];return n},m.highlight=function(t){if(t){var e=t.index,r=255&e,n=e>>8&255,i=e>>16&255;this.highlightId=[r/255,n/255,i/255,0]}else this.highlightId=[1,1,1,1]},m.update=function(t){if("perspective"in(t=t||{})&&(this.useOrtho=!t.perspective),"orthographic"in t&&(this.useOrtho=!!t.orthographic),"lineWidth"in t&&(this.lineWidth=t.lineWidth),"project"in t)if(Array.isArray(t.project))this.axesProject=t.project;else{var e=!!t.project;this.axesProject=[e,e,e]}if("projectScale"in t)if(Array.isArray(t.projectScale))this.projectScale=t.projectScale.slice();else{var r=+t.projectScale;this.projectScale=[r,r,r]}if(this.projectHasAlpha=!1,"projectOpacity"in t){if(Array.isArray(t.projectOpacity))this.projectOpacity=t.projectOpacity.slice();else{r=+t.projectOpacity;this.projectOpacity=[r,r,r]}for(var n=0;n<3;++n)this.projectOpacity[n]=g(this.projectOpacity[n]),this.projectOpacity[n]<1&&(this.projectHasAlpha=!0)}this.hasAlpha=!1,"opacity"in t&&(this.opacity=g(t.opacity),this.opacity<1&&(this.hasAlpha=!0)),this.dirty=!0;var i,a,s=t.position,l=t.font||"normal",c=t.alignment||[0,0];if(2===c.length)i=c[0],a=c[1];else{i=[],a=[];for(n=0;n0){var I=0,D=x,P=[0,0,0,1],R=[0,0,0,1],F=Array.isArray(p)&&Array.isArray(p[0]),B=Array.isArray(m)&&Array.isArray(m[0]);t:for(n=0;n<_;++n){y+=1;for(w=s[n],k=0;k<3;++k){if(isNaN(w[k])||!isFinite(w[k]))continue t;h[k]=Math.max(h[k],w[k]),u[k]=Math.min(u[k],w[k])}A=(N=O(f,n,l,this.pixelRatio)).mesh,T=N.lines,M=N.bounds;var N,j=N.visible;if(j)if(Array.isArray(p)){if(3===(V=F?n0?1-M[0][0]:Y<0?1+M[1][0]:1,W*=W>0?1-M[0][1]:W<0?1+M[1][1]:1],Z=A.cells||[],$=A.positions||[];for(k=0;k0){var m=r*u;o.drawBox(h-m,f-m,p+m,f+m,a),o.drawBox(h-m,d-m,p+m,d+m,a),o.drawBox(h-m,f-m,h+m,d+m,a),o.drawBox(p-m,f-m,p+m,d+m,a)}}}},s.update=function(t){t=t||{},this.innerFill=!!t.innerFill,this.outerFill=!!t.outerFill,this.innerColor=(t.innerColor||[0,0,0,.5]).slice(),this.outerColor=(t.outerColor||[0,0,0,.5]).slice(),this.borderColor=(t.borderColor||[0,0,0,1]).slice(),this.borderWidth=t.borderWidth||0,this.selectBox=(t.selectBox||this.selectBox).slice()},s.dispose=function(){this.boxBuffer.dispose(),this.boxShader.dispose(),this.plot.removeOverlay(this)}},{"./lib/shaders":295,"gl-buffer":238,"gl-shader":298}],297:[function(t,e,r){"use strict";e.exports=function(t,e){var r=n(t,e),a=i.mallocUint8(e[0]*e[1]*4);return new c(t,r,a)};var n=t("gl-fbo"),i=t("typedarray-pool"),a=t("ndarray"),o=t("bit-twiddle").nextPow2,s=t("cwise/lib/wrapper")({args:["array",{offset:[0,0,1],array:0},{offset:[0,0,2],array:0},{offset:[0,0,3],array:0},"scalar","scalar","index"],pre:{body:"{this_closestD2=1e8,this_closestX=-1,this_closestY=-1}",args:[],thisVars:["this_closestD2","this_closestX","this_closestY"],localVars:[]},body:{body:"{if(_inline_16_arg0_<255||_inline_16_arg1_<255||_inline_16_arg2_<255||_inline_16_arg3_<255){var _inline_16_l=_inline_16_arg4_-_inline_16_arg6_[0],_inline_16_a=_inline_16_arg5_-_inline_16_arg6_[1],_inline_16_f=_inline_16_l*_inline_16_l+_inline_16_a*_inline_16_a;_inline_16_fthis.buffer.length){i.free(this.buffer);for(var n=this.buffer=i.mallocUint8(o(r*e*4)),a=0;ar)for(t=r;te)for(t=e;t=0){for(var k=0|w.type.charAt(w.type.length-1),A=new Array(k),T=0;T=0;)M+=1;_[y]=M}var S=new Array(r.length);function E(){f.program=o.program(p,f._vref,f._fref,b,_);for(var t=0;t=0){var d=f.charCodeAt(f.length-1)-48;if(d<2||d>4)throw new n("","Invalid data type for attribute "+h+": "+f);o(t,e,p[0],i,d,a,h)}else{if(!(f.indexOf("mat")>=0))throw new n("","Unknown data type for attribute "+h+": "+f);var d=f.charCodeAt(f.length-1)-48;if(d<2||d>4)throw new n("","Invalid data type for attribute "+h+": "+f);s(t,e,p,i,d,a,h)}}}return a};var n=t("./GLError");function i(t,e,r,n,i,a){this._gl=t,this._wrapper=e,this._index=r,this._locations=n,this._dimension=i,this._constFunc=a}var a=i.prototype;function o(t,e,r,n,a,o,s){for(var l=["gl","v"],c=[],u=0;u4)throw new i("","Invalid uniform dimension type for matrix "+name+": "+r);return"gl.uniformMatrix"+a+"fv(locations["+e+"],false,obj"+t+")"}throw new i("","Unknown uniform data type for "+name+": "+r)}var a=r.charCodeAt(r.length-1)-48;if(a<2||a>4)throw new i("","Invalid data type");switch(r.charAt(0)){case"b":case"i":return"gl.uniform"+a+"iv(locations["+e+"],obj"+t+")";case"v":return"gl.uniform"+a+"fv(locations["+e+"],obj"+t+")";default:throw new i("","Unrecognized data type for vector "+name+": "+r)}}}function c(e){for(var n=["return function updateProperty(obj){"],i=function t(e,r){if("object"!=typeof r)return[[e,r]];var n=[];for(var i in r){var a=r[i],o=e;parseInt(i)+""===i?o+="["+i+"]":o+="."+i,"object"==typeof a?n.push.apply(n,t(o,a)):n.push([o,a])}return n}("",e),a=0;a4)throw new i("","Invalid data type");return"b"===t.charAt(0)?o(r,!1):o(r,0)}if(0===t.indexOf("mat")&&4===t.length){var r=t.charCodeAt(t.length-1)-48;if(r<2||r>4)throw new i("","Invalid uniform dimension type for matrix "+name+": "+t);return o(r*r,0)}throw new i("","Unknown uniform data type for "+name+": "+t)}}(r[u].type);var p}function h(t){var e;if(Array.isArray(t)){e=new Array(t.length);for(var r=0;r1){l[0]in o||(o[l[0]]=[]),o=o[l[0]];for(var c=1;c1)for(var l=0;l 0 U ||b|| > 0.\n // Assign z = 0, x = -b, y = a:\n // a*-b + b*a + c*0 = -ba + ba + 0 = 0\n if (v.x*v.x > v.z*v.z || v.y*v.y > v.z*v.z) {\n return normalize(vec3(-v.y, v.x, 0.0));\n } else {\n return normalize(vec3(0.0, v.z, -v.y));\n }\n}\n\n// Calculate the tube vertex and normal at the given index.\n//\n// The returned vertex is for a tube ring with its center at origin, radius of length(d), pointing in the direction of d.\n//\n// Each tube segment is made up of a ring of vertices.\n// These vertices are used to make up the triangles of the tube by connecting them together in the vertex array.\n// The indexes of tube segments run from 0 to 8.\n//\nvec3 getTubePosition(vec3 d, float index, out vec3 normal) {\n float segmentCount = 8.0;\n\n float angle = 2.0 * 3.14159 * (index / segmentCount);\n\n vec3 u = getOrthogonalVector(d);\n vec3 v = normalize(cross(u, d));\n\n vec3 x = u * cos(angle) * length(d);\n vec3 y = v * sin(angle) * length(d);\n vec3 v3 = x + y;\n\n normal = normalize(v3);\n\n return v3;\n}\n\nattribute vec4 vector;\nattribute vec4 color, position;\nattribute vec2 uv;\nuniform float vectorScale;\nuniform float tubeScale;\n\nuniform mat4 model\n , view\n , projection\n , inverseModel;\nuniform vec3 eyePosition\n , lightPosition;\n\nvarying vec3 f_normal\n , f_lightDirection\n , f_eyeDirection\n , f_data\n , f_position;\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n // Scale the vector magnitude to stay constant with\n // model & view changes.\n vec3 normal;\n vec3 XYZ = getTubePosition(mat3(model) * (tubeScale * vector.w * normalize(vector.xyz)), position.w, normal);\n vec4 tubePosition = model * vec4(position.xyz, 1.0) + vec4(XYZ, 0.0);\n\n //Lighting geometry parameters\n vec4 cameraCoordinate = view * tubePosition;\n cameraCoordinate.xyz /= cameraCoordinate.w;\n f_lightDirection = lightPosition - cameraCoordinate.xyz;\n f_eyeDirection = eyePosition - cameraCoordinate.xyz;\n f_normal = normalize((vec4(normal,0.0) * inverseModel).xyz);\n\n // vec4 m_position = model * vec4(tubePosition, 1.0);\n vec4 t_position = view * tubePosition;\n gl_Position = projection * t_position;\n\n f_color = color;\n f_data = tubePosition.xyz;\n f_position = position.xyz;\n f_uv = uv;\n}\n"]),a=n(["#extension GL_OES_standard_derivatives : enable\n\nprecision highp float;\n#define GLSLIFY 1\n\nfloat beckmannDistribution(float x, float roughness) {\n float NdotH = max(x, 0.0001);\n float cos2Alpha = NdotH * NdotH;\n float tan2Alpha = (cos2Alpha - 1.0) / cos2Alpha;\n float roughness2 = roughness * roughness;\n float denom = 3.141592653589793 * roughness2 * cos2Alpha * cos2Alpha;\n return exp(tan2Alpha / roughness2) / denom;\n}\n\nfloat cookTorranceSpecular(\n vec3 lightDirection,\n vec3 viewDirection,\n vec3 surfaceNormal,\n float roughness,\n float fresnel) {\n\n float VdotN = max(dot(viewDirection, surfaceNormal), 0.0);\n float LdotN = max(dot(lightDirection, surfaceNormal), 0.0);\n\n //Half angle vector\n vec3 H = normalize(lightDirection + viewDirection);\n\n //Geometric term\n float NdotH = max(dot(surfaceNormal, H), 0.0);\n float VdotH = max(dot(viewDirection, H), 0.000001);\n float LdotH = max(dot(lightDirection, H), 0.000001);\n float G1 = (2.0 * NdotH * VdotN) / VdotH;\n float G2 = (2.0 * NdotH * LdotN) / LdotH;\n float G = min(1.0, min(G1, G2));\n \n //Distribution term\n float D = beckmannDistribution(NdotH, roughness);\n\n //Fresnel term\n float F = pow(1.0 - VdotN, fresnel);\n\n //Multiply terms and done\n return G * F * D / max(3.14159265 * VdotN, 0.000001);\n}\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform vec3 clipBounds[2];\nuniform float roughness\n , fresnel\n , kambient\n , kdiffuse\n , kspecular\n , opacity;\nuniform sampler2D texture;\n\nvarying vec3 f_normal\n , f_lightDirection\n , f_eyeDirection\n , f_data\n , f_position;\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n if (outOfRange(clipBounds[0], clipBounds[1], f_position)) discard;\n vec3 N = normalize(f_normal);\n vec3 L = normalize(f_lightDirection);\n vec3 V = normalize(f_eyeDirection);\n\n if(gl_FrontFacing) {\n N = -N;\n }\n\n float specular = min(1.0, max(0.0, cookTorranceSpecular(L, V, N, roughness, fresnel)));\n float diffuse = min(kambient + kdiffuse * max(dot(N, L), 0.0), 1.0);\n\n vec4 surfaceColor = f_color * texture2D(texture, f_uv);\n vec4 litColor = surfaceColor.a * vec4(diffuse * surfaceColor.rgb + kspecular * vec3(1,1,1) * specular, 1.0);\n\n gl_FragColor = litColor * opacity;\n}\n"]),o=n(["precision highp float;\n\nprecision highp float;\n#define GLSLIFY 1\n\nvec3 getOrthogonalVector(vec3 v) {\n // Return up-vector for only-z vector.\n // Return ax + by + cz = 0, a point that lies on the plane that has v as a normal and that isn't (0,0,0).\n // From the above if-statement we have ||a|| > 0 U ||b|| > 0.\n // Assign z = 0, x = -b, y = a:\n // a*-b + b*a + c*0 = -ba + ba + 0 = 0\n if (v.x*v.x > v.z*v.z || v.y*v.y > v.z*v.z) {\n return normalize(vec3(-v.y, v.x, 0.0));\n } else {\n return normalize(vec3(0.0, v.z, -v.y));\n }\n}\n\n// Calculate the tube vertex and normal at the given index.\n//\n// The returned vertex is for a tube ring with its center at origin, radius of length(d), pointing in the direction of d.\n//\n// Each tube segment is made up of a ring of vertices.\n// These vertices are used to make up the triangles of the tube by connecting them together in the vertex array.\n// The indexes of tube segments run from 0 to 8.\n//\nvec3 getTubePosition(vec3 d, float index, out vec3 normal) {\n float segmentCount = 8.0;\n\n float angle = 2.0 * 3.14159 * (index / segmentCount);\n\n vec3 u = getOrthogonalVector(d);\n vec3 v = normalize(cross(u, d));\n\n vec3 x = u * cos(angle) * length(d);\n vec3 y = v * sin(angle) * length(d);\n vec3 v3 = x + y;\n\n normal = normalize(v3);\n\n return v3;\n}\n\nattribute vec4 vector;\nattribute vec4 position;\nattribute vec4 id;\n\nuniform mat4 model, view, projection;\nuniform float tubeScale;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n vec3 normal;\n vec3 XYZ = getTubePosition(mat3(model) * (tubeScale * vector.w * normalize(vector.xyz)), position.w, normal);\n vec4 tubePosition = model * vec4(position.xyz, 1.0) + vec4(XYZ, 0.0);\n\n gl_Position = projection * view * tubePosition;\n f_id = id;\n f_position = position.xyz;\n}\n"]),s=n(["precision highp float;\n#define GLSLIFY 1\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform vec3 clipBounds[2];\nuniform float pickId;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n if (outOfRange(clipBounds[0], clipBounds[1], f_position)) discard;\n\n gl_FragColor = vec4(pickId, f_id.xyz);\n}"]);r.meshShader={vertex:i,fragment:a,attributes:[{name:"position",type:"vec4"},{name:"normal",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"},{name:"vector",type:"vec4"}]},r.pickShader={vertex:o,fragment:s,attributes:[{name:"position",type:"vec4"},{name:"id",type:"vec4"},{name:"vector",type:"vec4"}]}},{glslify:402}],309:[function(t,e,r){"use strict";var n=t("gl-shader"),i=t("gl-buffer"),a=t("gl-vao"),o=t("gl-texture2d"),s=t("normals"),l=t("gl-mat4/multiply"),c=t("gl-mat4/invert"),u=t("ndarray"),h=t("colormap"),f=t("simplicial-complex-contour"),p=t("typedarray-pool"),d=t("./shaders"),g=d.meshShader,v=d.pickShader,m=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function y(t,e,r,n,i,a,o,s,l,c,u,h,f,p,d,g,v,y,x,b,_,w,k,A){this.gl=t,this.cells=[],this.positions=[],this.intensity=[],this.texture=e,this.dirty=!0,this.triShader=r,this.pickShader=n,this.trianglePositions=i,this.triangleVectors=a,this.triangleColors=s,this.triangleNormals=c,this.triangleUVs=l,this.triangleIds=o,this.triangleVAO=u,this.triangleCount=0,this.lineWidth=1,this.edgePositions=h,this.edgeColors=p,this.edgeUVs=d,this.edgeIds=f,this.edgeVAO=g,this.edgeCount=0,this.pointPositions=v,this.pointColors=x,this.pointUVs=b,this.pointSizes=_,this.pointIds=y,this.pointVAO=w,this.pointCount=0,this.contourLineWidth=1,this.contourPositions=k,this.contourVAO=A,this.contourCount=0,this.contourColor=[0,0,0],this.contourEnable=!1,this.pickId=1,this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.lightPosition=[1e5,1e5,0],this.ambientLight=.8,this.diffuseLight=.8,this.specularLight=2,this.roughness=.5,this.fresnel=1.5,this.opacity=1,this.tubeScale=1,this._model=m,this._view=m,this._projection=m,this._resolution=[1,1],this.pixelRatio=1}var x=y.prototype;function b(t){var e=n(t,v.vertex,v.fragment,null,v.attributes);return e.attributes.position.location=0,e.attributes.id.location=1,e.attributes.vector.location=5,e}x.isOpaque=function(){return this.opacity>=1},x.isTransparent=function(){return this.opacity<1},x.pickSlots=1,x.setPickBase=function(t){this.pickId=t},x.highlight=function(t){if(t&&this.contourEnable){for(var e=f(this.cells,this.intensity,t.intensity),r=e.cells,n=e.vertexIds,i=e.vertexWeights,a=r.length,o=p.mallocFloat32(6*a),s=0,l=0;l0){var d=this.triShader;d.bind(),d.uniforms=s,this.triangleVAO.bind(),e.drawArrays(e.TRIANGLES,0,3*this.triangleCount),this.triangleVAO.unbind()}},x.drawPick=function(t){t=t||{};for(var e=this.gl,r=t.model||m,n=t.view||m,i=t.projection||m,a=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],o=0;o<3;++o)a[0][o]=Math.max(a[0][o],this.clipBounds[0][o]),a[1][o]=Math.min(a[1][o],this.clipBounds[1][o]);this._model=[].slice.call(r),this._view=[].slice.call(n),this._projection=[].slice.call(i),this._resolution=[e.drawingBufferWidth,e.drawingBufferHeight];var s={model:r,view:n,projection:i,clipBounds:a,tubeScale:this.tubeScale,pickId:this.pickId/255},l=this.pickShader;l.bind(),l.uniforms=s,this.triangleCount>0&&(this.triangleVAO.bind(),e.drawArrays(e.TRIANGLES,0,3*this.triangleCount),this.triangleVAO.unbind()),this.edgeCount>0&&(this.edgeVAO.bind(),e.lineWidth(this.lineWidth*this.pixelRatio),e.drawArrays(e.LINES,0,2*this.edgeCount),this.edgeVAO.unbind())},x.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;var e=t.value[0]+256*t.value[1]+65536*t.value[2],r=this.cells[e],n=this.positions[r[1]].slice(0,3);return{index:e,position:n,intensity:this.intensity[r[1]],velocity:this.vectors[r[1]].slice(0,3),divergence:this.vectors[r[1]][3],dataCoordinate:n}},x.dispose=function(){this.texture.dispose(),this.triShader.dispose(),this.pickShader.dispose(),this.triangleVAO.dispose(),this.trianglePositions.dispose(),this.triangleVectors.dispose(),this.triangleColors.dispose(),this.triangleUVs.dispose(),this.triangleNormals.dispose(),this.triangleIds.dispose(),this.edgeVAO.dispose(),this.edgePositions.dispose(),this.edgeColors.dispose(),this.edgeUVs.dispose(),this.edgeIds.dispose(),this.pointVAO.dispose(),this.pointPositions.dispose(),this.pointColors.dispose(),this.pointUVs.dispose(),this.pointSizes.dispose(),this.pointIds.dispose(),this.contourVAO.dispose(),this.contourPositions.dispose()},e.exports=function(t,e){1===arguments.length&&(t=(e=t).gl);var r=e.triShader||function(t){var e=n(t,g.vertex,g.fragment,null,g.attributes);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e.attributes.vector.location=5,e}(t),s=b(t),l=o(t,u(new Uint8Array([255,255,255,255]),[1,1,4]));l.generateMipmap(),l.minFilter=t.LINEAR_MIPMAP_LINEAR,l.magFilter=t.LINEAR;var c=i(t),h=i(t),f=i(t),p=i(t),d=i(t),v=i(t),m=a(t,[{buffer:c,type:t.FLOAT,size:4},{buffer:v,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:f,type:t.FLOAT,size:4},{buffer:p,type:t.FLOAT,size:2},{buffer:d,type:t.FLOAT,size:3},{buffer:h,type:t.FLOAT,size:4}]),x=i(t),_=i(t),w=i(t),k=i(t),A=a(t,[{buffer:x,type:t.FLOAT,size:3},{buffer:k,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:_,type:t.FLOAT,size:4},{buffer:w,type:t.FLOAT,size:2}]),T=i(t),M=i(t),S=i(t),E=i(t),C=i(t),L=a(t,[{buffer:T,type:t.FLOAT,size:3},{buffer:C,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:M,type:t.FLOAT,size:4},{buffer:S,type:t.FLOAT,size:2},{buffer:E,type:t.FLOAT,size:1}]),z=i(t),O=new y(t,l,r,s,c,h,v,f,p,d,m,x,k,_,w,A,T,C,M,S,E,L,z,a(t,[{buffer:z,type:t.FLOAT,size:3}]));return O.update(e),O}},{"./shaders":308,colormap:117,"gl-buffer":238,"gl-mat4/invert":262,"gl-mat4/multiply":264,"gl-shader":298,"gl-texture2d":315,"gl-vao":320,ndarray:443,normals:446,"simplicial-complex-contour":503,"typedarray-pool":530}],310:[function(t,e,r){"use strict";var n=t("gl-vec3"),i=t("gl-vec4"),a=function(t,e,r,a){for(var o=0,s=0;so&&(o=u)}var h=t.map(function(t){return function(t,e,r,a){var o,s,l,c=t.points,u=t.velocities,h=t.divergences;n.set(n.create(),0,1,0),n.create(),n.create();n.create();for(var f=[],p=[],d=[],g=[],v=[],m=[],y=0,x=0,b=i.create(),_=i.create(),w=0;w0)for(k=0;k<8;k++){var A=(k+1)%8;f.push(g[k],v[k],v[A],v[A],g[A],g[k]),d.push(_,b,b,b,_,_),m.push(y,x,x,x,y,y),p.push([f.length-6,f.length-5,f.length-4],[f.length-3,f.length-2,f.length-1])}var T=g;g=v,v=T,T=_,_=b,b=T,T=y,y=x,x=T}return{positions:f,cells:p,vectors:d,vertexIntensity:m}}(t,r,a,o)}),f=[],p=[],d=[],g=[];for(s=0;se)return r-1}return r},c=n.create(),u=n.create(),h=function(t,e,r){return tr?r:t},f=function(t,e,r,i){var a=t[0],o=t[1],s=t[2],f=r[0].length,p=r[1].length,d=r[2].length,g=l(r[0],a),v=l(r[1],o),m=l(r[2],s),y=g+1,x=v+1,b=m+1;if(r[0][g]===a&&(y=g),r[1][v]===o&&(x=v),r[2][m]===s&&(b=m),i&&(g=h(g,0,f-1),y=h(y,0,f-1),v=h(v,0,p-1),x=h(x,0,p-1),m=h(m,0,d-1),b=h(b,0,d-1)),g<0||v<0||m<0||y>=f||x>=p||b>=d)return n.create();var _=(a-r[0][g])/(r[0][y]-r[0][g]),w=(o-r[1][v])/(r[1][x]-r[1][v]),k=(s-r[2][m])/(r[2][b]-r[2][m]);(_<0||_>1||isNaN(_))&&(_=0),(w<0||w>1||isNaN(w))&&(w=0),(k<0||k>1||isNaN(k))&&(k=0);var A=m*f*p,T=b*f*p,M=v*f,S=x*f,E=g,C=y,L=e[M+A+E],z=e[M+A+C],O=e[S+A+E],I=e[S+A+C],D=e[M+T+E],P=e[M+T+C],R=e[S+T+E],F=e[S+T+C],B=n.create();return n.lerp(B,L,z,_),n.lerp(c,O,I,_),n.lerp(B,B,c,w),n.lerp(c,D,P,_),n.lerp(u,R,F,_),n.lerp(c,c,u,w),n.lerp(B,B,c,k),B},p=function(t){var e=1/0;t.sort(function(t,e){return t-e});for(var r=1;r=h&&r<=g&&n>=f&&n<=v&&i>=d&&i<=m},x=10*n.distance(e[0],e[1])/i,b=x*x,_=1,w=0;n.create();r.length>=2&&(_=function(t){for(var e=[],r=[],n=[],i={},a={},o={},s=0;sw&&!isNaN(D)&&isFinite(D)&&(w=D),C.push(D),u.push({points:T,velocities:M,divergences:C});for(var z=0;z<100*i&&T.lengthb&&n.scale(O,O,x/Math.sqrt(I)),n.add(O,O,A),S=t.getVelocity(O),n.squaredDistance(E,O)-b>-1e-4*b){T.push(O),E=O,M.push(S);L=t.getDivergence(O,S);(D=n.length(L))>w&&!isNaN(D)&&isFinite(D)&&(w=D),C.push(D)}A=O}}for(k=0;k max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform vec3 lowerBound, upperBound;\nuniform float contourTint;\nuniform vec4 contourColor;\nuniform sampler2D colormap;\nuniform vec3 clipBounds[2];\nuniform float roughness, fresnel, kambient, kdiffuse, kspecular, opacity;\nuniform float vertexColor;\n\nvarying float value, kill;\nvarying vec3 worldCoordinate;\nvarying vec3 lightDirection, eyeDirection, surfaceNormal;\nvarying vec4 vColor;\n\nvoid main() {\n if ((kill > 0.0) ||\n (outOfRange(clipBounds[0], clipBounds[1], worldCoordinate))) discard;\n\n vec3 N = normalize(surfaceNormal);\n vec3 V = normalize(eyeDirection);\n vec3 L = normalize(lightDirection);\n\n if(gl_FrontFacing) {\n N = -N;\n }\n\n float specular = max(beckmannSpecular(L, V, N, roughness), 0.);\n float diffuse = min(kambient + kdiffuse * max(dot(N, L), 0.0), 1.0);\n\n //decide how to interpolate color \u2014 in vertex or in fragment\n vec4 surfaceColor =\n step(vertexColor, .5) * texture2D(colormap, vec2(value, value)) +\n step(.5, vertexColor) * vColor;\n\n vec4 litColor = surfaceColor.a * vec4(diffuse * surfaceColor.rgb + kspecular * vec3(1,1,1) * specular, 1.0);\n\n gl_FragColor = mix(litColor, contourColor, contourTint) * opacity;\n}\n"]),s=i(["precision highp float;\n#define GLSLIFY 1\n\nattribute vec4 uv;\nattribute float f;\n\nuniform vec3 objectOffset;\nuniform mat3 permutation;\nuniform mat4 model, view, projection;\nuniform float height, zOffset;\nuniform sampler2D colormap;\n\nvarying float value, kill;\nvarying vec3 worldCoordinate;\nvarying vec2 planeCoordinate;\nvarying vec3 lightDirection, eyeDirection, surfaceNormal;\nvarying vec4 vColor;\n\nvoid main() {\n vec3 dataCoordinate = permutation * vec3(uv.xy, height);\n worldCoordinate = objectOffset + dataCoordinate;\n vec4 worldPosition = model * vec4(worldCoordinate, 1.0);\n\n vec4 clipPosition = projection * view * worldPosition;\n clipPosition.z += zOffset;\n\n gl_Position = clipPosition;\n value = f + objectOffset.z;\n kill = -1.0;\n planeCoordinate = uv.zw;\n\n vColor = texture2D(colormap, vec2(value, value));\n\n //Don't do lighting for contours\n surfaceNormal = vec3(1,0,0);\n eyeDirection = vec3(0,1,0);\n lightDirection = vec3(0,0,1);\n}\n"]),l=i(["precision highp float;\n#define GLSLIFY 1\n\nbool outOfRange(float a, float b, float p) {\n return ((p > max(a, b)) || \n (p < min(a, b)));\n}\n\nbool outOfRange(vec2 a, vec2 b, vec2 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y));\n}\n\nbool outOfRange(vec3 a, vec3 b, vec3 p) {\n return (outOfRange(a.x, b.x, p.x) ||\n outOfRange(a.y, b.y, p.y) ||\n outOfRange(a.z, b.z, p.z));\n}\n\nbool outOfRange(vec4 a, vec4 b, vec4 p) {\n return outOfRange(a.xyz, b.xyz, p.xyz);\n}\n\nuniform vec2 shape;\nuniform vec3 clipBounds[2];\nuniform float pickId;\n\nvarying float value, kill;\nvarying vec3 worldCoordinate;\nvarying vec2 planeCoordinate;\nvarying vec3 surfaceNormal;\n\nvec2 splitFloat(float v) {\n float vh = 255.0 * v;\n float upper = floor(vh);\n float lower = fract(vh);\n return vec2(upper / 255.0, floor(lower * 16.0) / 16.0);\n}\n\nvoid main() {\n if ((kill > 0.0) ||\n (outOfRange(clipBounds[0], clipBounds[1], worldCoordinate))) discard;\n\n vec2 ux = splitFloat(planeCoordinate.x / shape.x);\n vec2 uy = splitFloat(planeCoordinate.y / shape.y);\n gl_FragColor = vec4(pickId, ux.x, uy.x, ux.y + (uy.y/16.0));\n}\n"]);r.createShader=function(t){var e=n(t,a,o,null,[{name:"uv",type:"vec4"},{name:"f",type:"vec3"},{name:"normal",type:"vec3"}]);return e.attributes.uv.location=0,e.attributes.f.location=1,e.attributes.normal.location=2,e},r.createPickShader=function(t){var e=n(t,a,l,null,[{name:"uv",type:"vec4"},{name:"f",type:"vec3"},{name:"normal",type:"vec3"}]);return e.attributes.uv.location=0,e.attributes.f.location=1,e.attributes.normal.location=2,e},r.createContourShader=function(t){var e=n(t,s,o,null,[{name:"uv",type:"vec4"},{name:"f",type:"float"}]);return e.attributes.uv.location=0,e.attributes.f.location=1,e},r.createPickContourShader=function(t){var e=n(t,s,l,null,[{name:"uv",type:"vec4"},{name:"f",type:"float"}]);return e.attributes.uv.location=0,e.attributes.f.location=1,e}},{"gl-shader":298,glslify:402}],312:[function(t,e,r){arguments[4][102][0].apply(r,arguments)},{dup:102}],313:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=y(e),n=b(e),s=x(e),l=_(e),c=i(e),u=a(e,[{buffer:c,size:4,stride:w,offset:0},{buffer:c,size:3,stride:w,offset:16},{buffer:c,size:3,stride:w,offset:28}]),h=i(e),f=a(e,[{buffer:h,size:4,stride:20,offset:0},{buffer:h,size:1,stride:20,offset:16}]),p=i(e),d=a(e,[{buffer:p,size:2,type:e.FLOAT}]),g=o(e,1,S,e.RGBA,e.UNSIGNED_BYTE);g.minFilter=e.LINEAR,g.magFilter=e.LINEAR;var v=new E(e,[0,0],[[0,0,0],[0,0,0]],r,n,c,u,g,s,l,h,f,p,d,[0,0,0]),m={levels:[[],[],[]]};for(var k in t)m[k]=t[k];return m.colormap=m.colormap||"jet",v.update(m),v};var n=t("bit-twiddle"),i=t("gl-buffer"),a=t("gl-vao"),o=t("gl-texture2d"),s=t("typedarray-pool"),l=t("colormap"),c=t("ndarray-ops"),u=t("ndarray-pack"),h=t("ndarray"),f=t("surface-nets"),p=t("gl-mat4/multiply"),d=t("gl-mat4/invert"),g=t("binary-search-bounds"),v=t("ndarray-gradient"),m=t("./lib/shaders"),y=m.createShader,x=m.createContourShader,b=m.createPickShader,_=m.createPickContourShader,w=40,k=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1],A=[[0,0],[0,1],[1,0],[1,1],[1,0],[0,1]],T=[[0,0,0,0,0,0,0,0,0],[0,0,0,0,0,0,0,0,0],[0,0,0,0,0,0,0,0,0]];function M(t,e,r,n,i){this.position=t,this.index=e,this.uv=r,this.level=n,this.dataCoordinate=i}!function(){for(var t=0;t<3;++t){var e=T[t],r=(t+2)%3;e[(t+1)%3+0]=1,e[r+3]=1,e[t+6]=1}}();var S=256;function E(t,e,r,n,i,a,o,l,c,u,f,p,d,g,v){this.gl=t,this.shape=e,this.bounds=r,this.objectOffset=v,this.intensityBounds=[],this._shader=n,this._pickShader=i,this._coordinateBuffer=a,this._vao=o,this._colorMap=l,this._contourShader=c,this._contourPickShader=u,this._contourBuffer=f,this._contourVAO=p,this._contourOffsets=[[],[],[]],this._contourCounts=[[],[],[]],this._vertexCount=0,this._pickResult=new M([0,0,0],[0,0],[0,0],[0,0,0],[0,0,0]),this._dynamicBuffer=d,this._dynamicVAO=g,this._dynamicOffsets=[0,0,0],this._dynamicCounts=[0,0,0],this.contourWidth=[1,1,1],this.contourLevels=[[1],[1],[1]],this.contourTint=[0,0,0],this.contourColor=[[.5,.5,.5,1],[.5,.5,.5,1],[.5,.5,.5,1]],this.showContour=!0,this.showSurface=!0,this.enableHighlight=[!0,!0,!0],this.highlightColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.highlightTint=[1,1,1],this.highlightLevel=[-1,-1,-1],this.enableDynamic=[!0,!0,!0],this.dynamicLevel=[NaN,NaN,NaN],this.dynamicColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.dynamicTint=[1,1,1],this.dynamicWidth=[1,1,1],this.axesBounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.surfaceProject=[!1,!1,!1],this.contourProject=[[!1,!1,!1],[!1,!1,!1],[!1,!1,!1]],this.colorBounds=[!1,!1],this._field=[h(s.mallocFloat(1024),[0,0]),h(s.mallocFloat(1024),[0,0]),h(s.mallocFloat(1024),[0,0])],this.pickId=1,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.snapToData=!1,this.pixelRatio=1,this.opacity=1,this.lightPosition=[10,1e4,0],this.ambientLight=.8,this.diffuseLight=.8,this.specularLight=2,this.roughness=.5,this.fresnel=1.5,this.vertexColor=0,this.dirty=!0}var C=E.prototype;C.isTransparent=function(){return this.opacity<1},C.isOpaque=function(){if(this.opacity>=1)return!0;for(var t=0;t<3;++t)if(this._contourCounts[t].length>0||this._dynamicCounts[t]>0)return!0;return!1},C.pickSlots=1,C.setPickBase=function(t){this.pickId=t};var L=[0,0,0],z={showSurface:!1,showContour:!1,projections:[k.slice(),k.slice(),k.slice()],clipBounds:[[[0,0,0],[0,0,0]],[[0,0,0],[0,0,0]],[[0,0,0],[0,0,0]]]};function O(t,e){var r,n,i,a=e.axes&&e.axes.lastCubeProps.axis||L,o=e.showSurface,s=e.showContour;for(r=0;r<3;++r)for(o=o||e.surfaceProject[r],n=0;n<3;++n)s=s||e.contourProject[r][n];for(r=0;r<3;++r){var l=z.projections[r];for(n=0;n<16;++n)l[n]=0;for(n=0;n<4;++n)l[5*n]=1;l[5*r]=0,l[12+r]=e.axesBounds[+(a[r]>0)][r],p(l,t.model,l);var c=z.clipBounds[r];for(i=0;i<2;++i)for(n=0;n<3;++n)c[i][n]=t.clipBounds[i][n];c[0][r]=-1e8,c[1][r]=1e8}return z.showSurface=o,z.showContour=s,z}var I={model:k,view:k,projection:k,inverseModel:k.slice(),lowerBound:[0,0,0],upperBound:[0,0,0],colorMap:0,clipBounds:[[0,0,0],[0,0,0]],height:0,contourTint:0,contourColor:[0,0,0,1],permutation:[1,0,0,0,1,0,0,0,1],zOffset:-1e-4,objectOffset:[0,0,0],kambient:1,kdiffuse:1,kspecular:1,lightPosition:[1e3,1e3,1e3],eyePosition:[0,0,0],roughness:1,fresnel:1,opacity:1,vertexColor:0},D=k.slice(),P=[1,0,0,0,1,0,0,0,1];function R(t,e){t=t||{};var r=this.gl;r.disable(r.CULL_FACE),this._colorMap.bind(0);var n=I;n.model=t.model||k,n.view=t.view||k,n.projection=t.projection||k,n.lowerBound=[this.bounds[0][0],this.bounds[0][1],this.colorBounds[0]||this.bounds[0][2]],n.upperBound=[this.bounds[1][0],this.bounds[1][1],this.colorBounds[1]||this.bounds[1][2]],n.objectOffset=this.objectOffset,n.contourColor=this.contourColor[0],n.inverseModel=d(n.inverseModel,n.model);for(var i=0;i<2;++i)for(var a=n.clipBounds[i],o=0;o<3;++o)a[o]=Math.min(Math.max(this.clipBounds[i][o],-1e8),1e8);n.kambient=this.ambientLight,n.kdiffuse=this.diffuseLight,n.kspecular=this.specularLight,n.roughness=this.roughness,n.fresnel=this.fresnel,n.opacity=this.opacity,n.height=0,n.permutation=P,n.vertexColor=this.vertexColor;var s=D;for(p(s,n.view,n.model),p(s,n.projection,s),d(s,s),i=0;i<3;++i)n.eyePosition[i]=s[12+i]/s[15];var l=s[15];for(i=0;i<3;++i)l+=this.lightPosition[i]*s[4*i+3];for(i=0;i<3;++i){var c=s[12+i];for(o=0;o<3;++o)c+=s[4*o+i]*this.lightPosition[o];n.lightPosition[i]=c/l}var u=O(n,this);if(u.showSurface&&e===this.opacity<1){for(this._shader.bind(),this._shader.uniforms=n,this._vao.bind(),this.showSurface&&this._vertexCount&&this._vao.draw(r.TRIANGLES,this._vertexCount),i=0;i<3;++i)this.surfaceProject[i]&&this.vertexCount&&(this._shader.uniforms.model=u.projections[i],this._shader.uniforms.clipBounds=u.clipBounds[i],this._vao.draw(r.TRIANGLES,this._vertexCount));this._vao.unbind()}if(u.showContour&&!e){var h=this._contourShader;n.kambient=1,n.kdiffuse=0,n.kspecular=0,n.opacity=1,h.bind(),h.uniforms=n;var f=this._contourVAO;for(f.bind(),i=0;i<3;++i)for(h.uniforms.permutation=T[i],r.lineWidth(this.contourWidth[i]*this.pixelRatio),o=0;o>4)/16)/255,i=Math.floor(n),a=n-i,o=e[1]*(t.value[1]+(15&t.value[2])/16)/255,s=Math.floor(o),l=o-s;i+=1,s+=1;var c=r.position;c[0]=c[1]=c[2]=0;for(var u=0;u<2;++u)for(var h=u?a:1-a,f=0;f<2;++f)for(var p=i+u,d=s+f,v=h*(f?l:1-l),m=0;m<3;++m)c[m]+=this._field[m].get(p,d)*v;for(var y=this._pickResult.level,x=0;x<3;++x)if(y[x]=g.le(this.contourLevels[x],c[x]),y[x]<0)this.contourLevels[x].length>0&&(y[x]=0);else if(y[x]Math.abs(_-c[x])&&(y[x]+=1)}for(r.index[0]=a<.5?i:i+1,r.index[1]=l<.5?s:s+1,r.uv[0]=n/e[0],r.uv[1]=o/e[1],m=0;m<3;++m)r.dataCoordinate[m]=this._field[m].get(r.index[0],r.index[1]);return r},C.padField=function(t,e){var r=e.shape.slice(),n=t.shape.slice();c.assign(t.lo(1,1).hi(r[0],r[1]),e),c.assign(t.lo(1).hi(r[0],1),e.hi(r[0],1)),c.assign(t.lo(1,n[1]-1).hi(r[0],1),e.lo(0,r[1]-1).hi(r[0],1)),c.assign(t.lo(0,1).hi(1,r[1]),e.hi(1)),c.assign(t.lo(n[0]-1,1).hi(1,r[1]),e.lo(r[0]-1)),t.set(0,0,e.get(0,0)),t.set(0,n[1]-1,e.get(0,r[1]-1)),t.set(n[0]-1,0,e.get(r[0]-1,0)),t.set(n[0]-1,n[1]-1,e.get(r[0]-1,r[1]-1))},C.update=function(t){t=t||{},this.objectOffset=t.objectOffset||this.objectOffset,this.dirty=!0,"contourWidth"in t&&(this.contourWidth=B(t.contourWidth,Number)),"showContour"in t&&(this.showContour=B(t.showContour,Boolean)),"showSurface"in t&&(this.showSurface=!!t.showSurface),"contourTint"in t&&(this.contourTint=B(t.contourTint,Boolean)),"contourColor"in t&&(this.contourColor=j(t.contourColor)),"contourProject"in t&&(this.contourProject=B(t.contourProject,function(t){return B(t,Boolean)})),"surfaceProject"in t&&(this.surfaceProject=t.surfaceProject),"dynamicColor"in t&&(this.dynamicColor=j(t.dynamicColor)),"dynamicTint"in t&&(this.dynamicTint=B(t.dynamicTint,Number)),"dynamicWidth"in t&&(this.dynamicWidth=B(t.dynamicWidth,Number)),"opacity"in t&&(this.opacity=t.opacity),"colorBounds"in t&&(this.colorBounds=t.colorBounds),"vertexColor"in t&&(this.vertexColor=t.vertexColor?1:0);var e=t.field||t.coords&&t.coords[2]||null,r=!1;if(e||(e=this._field[2].shape[0]||this._field[2].shape[2]?this._field[2].lo(1,1).hi(this._field[2].shape[0]-2,this._field[2].shape[1]-2):this._field[2].hi(0,0)),"field"in t||"coords"in t){var i=(e.shape[0]+2)*(e.shape[1]+2);i>this._field[2].data.length&&(s.freeFloat(this._field[2].data),this._field[2].data=s.mallocFloat(n.nextPow2(i))),this._field[2]=h(this._field[2].data,[e.shape[0]+2,e.shape[1]+2]),this.padField(this._field[2],e),this.shape=e.shape.slice();for(var a=this.shape,o=0;o<2;++o)this._field[2].size>this._field[o].data.length&&(s.freeFloat(this._field[o].data),this._field[o].data=s.mallocFloat(this._field[2].size)),this._field[o]=h(this._field[o].data,[a[0]+2,a[1]+2]);if(t.coords){var p=t.coords;if(!Array.isArray(p)||3!==p.length)throw new Error("gl-surface: invalid coordinates for x/y");for(o=0;o<2;++o){var d=p[o];for(b=0;b<2;++b)if(d.shape[b]!==a[b])throw new Error("gl-surface: coords have incorrect shape");this.padField(this._field[o],d)}}else if(t.ticks){var g=t.ticks;if(!Array.isArray(g)||2!==g.length)throw new Error("gl-surface: invalid ticks");for(o=0;o<2;++o){var m=g[o];if((Array.isArray(m)||m.length)&&(m=h(m)),m.shape[0]!==a[o])throw new Error("gl-surface: invalid tick length");var y=h(m.data,a);y.stride[o]=m.stride[0],y.stride[1^o]=0,this.padField(this._field[o],y)}}else{for(o=0;o<2;++o){var x=[0,0];x[o]=1,this._field[o]=h(this._field[o].data,[a[0]+2,a[1]+2],x,0)}this._field[0].set(0,0,0);for(var b=0;b0){for(var kt=0;kt<5;++kt)rt.pop();G-=1}continue t}rt.push(st[0],st[1],ut[0],ut[1],st[2]),G+=1}}ot.push(G)}this._contourOffsets[nt]=at,this._contourCounts[nt]=ot}var At=s.mallocFloat(rt.length);for(o=0;o halfCharStep + halfCharWidth ||\n\t\t\t\t\tfloor(uv.x) < halfCharStep - halfCharWidth) return;\n\n\t\t\t\tuv += charId * charStep;\n\t\t\t\tuv = uv / atlasSize;\n\n\t\t\t\tvec4 color = fontColor;\n\t\t\t\tvec4 mask = texture2D(atlas, uv);\n\n\t\t\t\tfloat maskY = lightness(mask);\n\t\t\t\t// float colorY = lightness(color);\n\t\t\t\tcolor.a *= maskY;\n\t\t\t\tcolor.a *= opacity;\n\n\t\t\t\t// color.a += .1;\n\n\t\t\t\t// antialiasing, see yiq color space y-channel formula\n\t\t\t\t// color.rgb += (1. - color.rgb) * (1. - mask.rgb);\n\n\t\t\t\tgl_FragColor = color;\n\t\t\t}"});return{regl:t,draw:e,atlas:{}}},k.prototype.update=function(t){var e=this;if("string"==typeof t)t={text:t};else if(!t)return;null!=(t=i(t,{position:"position positions coord coords coordinates",font:"font fontFace fontface typeface cssFont css-font family fontFamily",fontSize:"fontSize fontsize size font-size",text:"text texts chars characters value values symbols",align:"align alignment textAlign textbaseline",baseline:"baseline textBaseline textbaseline",direction:"dir direction textDirection",color:"color colour fill fill-color fillColor textColor textcolor",kerning:"kerning kern",range:"range dataBox",viewport:"vp viewport viewBox viewbox viewPort",opacity:"opacity alpha transparency visible visibility opaque",offset:"offset positionOffset padding shift indent indentation"},!0)).opacity&&(Array.isArray(t.opacity)?this.opacity=t.opacity.map(function(t){return parseFloat(t)}):this.opacity=parseFloat(t.opacity)),null!=t.viewport&&(this.viewport=h(t.viewport),k.normalViewport&&(this.viewport.y=this.canvas.height-this.viewport.y-this.viewport.height),this.viewportArray=[this.viewport.x,this.viewport.y,this.viewport.width,this.viewport.height]),null==this.viewport&&(this.viewport={x:0,y:0,width:this.gl.drawingBufferWidth,height:this.gl.drawingBufferHeight},this.viewportArray=[this.viewport.x,this.viewport.y,this.viewport.width,this.viewport.height]),null!=t.kerning&&(this.kerning=t.kerning),null!=t.offset&&("number"==typeof t.offset&&(t.offset=[t.offset,0]),this.positionOffset=y(t.offset)),t.direction&&(this.direction=t.direction),t.range&&(this.range=t.range,this.scale=[1/(t.range[2]-t.range[0]),1/(t.range[3]-t.range[1])],this.translate=[-t.range[0],-t.range[1]]),t.scale&&(this.scale=t.scale),t.translate&&(this.translate=t.translate),this.scale||(this.scale=[1/this.viewport.width,1/this.viewport.height]),this.translate||(this.translate=[0,0]),this.font.length||t.font||(t.font=k.baseFontSize+"px sans-serif");var r,a=!1,o=!1;if(t.font&&(Array.isArray(t.font)?t.font:[t.font]).forEach(function(t,r){if("string"==typeof t)try{t=n.parse(t)}catch(e){t=n.parse(k.baseFontSize+"px "+t)}else t=n.parse(n.stringify(t));var i=n.stringify({size:k.baseFontSize,family:t.family,stretch:_?t.stretch:void 0,variant:t.variant,weight:t.weight,style:t.style}),s=p(t.size),l=Math.round(s[0]*d(s[1]));if(l!==e.fontSize[r]&&(o=!0,e.fontSize[r]=l),!(e.font[r]&&i==e.font[r].baseString||(a=!0,e.font[r]=k.fonts[i],e.font[r]))){var c=t.family.join(", "),u=[t.style];t.style!=t.variant&&u.push(t.variant),t.variant!=t.weight&&u.push(t.weight),_&&t.weight!=t.stretch&&u.push(t.stretch),e.font[r]={baseString:i,family:c,weight:t.weight,stretch:t.stretch,style:t.style,variant:t.variant,width:{},kerning:{},metrics:m(c,{origin:"top",fontSize:k.baseFontSize,fontStyle:u.join(" ")})},k.fonts[i]=e.font[r]}}),(a||o)&&this.font.forEach(function(r,i){var a=n.stringify({size:e.fontSize[i],family:r.family,stretch:_?r.stretch:void 0,variant:r.variant,weight:r.weight,style:r.style});if(e.fontAtlas[i]=e.shader.atlas[a],!e.fontAtlas[i]){var o=r.metrics;e.shader.atlas[a]=e.fontAtlas[i]={fontString:a,step:2*Math.ceil(e.fontSize[i]*o.bottom*.5),em:e.fontSize[i],cols:0,rows:0,height:0,width:0,chars:[],ids:{},texture:e.regl.texture()}}null==t.text&&(t.text=e.text)}),"string"==typeof t.text&&t.position&&t.position.length>2){for(var s=Array(.5*t.position.length),f=0;f2){for(var w=!t.position[0].length,A=u.mallocFloat(2*this.count),T=0,M=0;T1?e.align[r]:e.align[0]:e.align;if("number"==typeof n)return n;switch(n){case"right":case"end":return-t;case"center":case"centre":case"middle":return.5*-t}return 0})),null==this.baseline&&null==t.baseline&&(t.baseline=0),null!=t.baseline&&(this.baseline=t.baseline,Array.isArray(this.baseline)||(this.baseline=[this.baseline]),this.baselineOffset=this.baseline.map(function(t,r){var n=(e.font[r]||e.font[0]).metrics,i=0;return i+=.5*n.bottom,i+="number"==typeof t?t-n.baseline:-n[t],k.normalViewport||(i*=-1),i})),null!=t.color)if(t.color||(t.color="transparent"),"string"!=typeof t.color&&isNaN(t.color)){var H;if("number"==typeof t.color[0]&&t.color.length>this.counts.length){var G=t.color.length;H=u.mallocUint8(G);for(var Y=(t.color.subarray||t.color.slice).bind(t.color),W=0;W4||this.baselineOffset.length>1||this.align&&this.align.length>1||this.fontAtlas.length>1||this.positionOffset.length>2){var $=Math.max(.5*this.position.length||0,.25*this.color.length||0,this.baselineOffset.length||0,this.alignOffset.length||0,this.font.length||0,this.opacity.length||0,.5*this.positionOffset.length||0);this.batch=Array($);for(var J=0;J1?e.counts[J]:e.counts[0],offset:e.textOffsets.length>1?e.textOffsets[J]:e.textOffsets[0],color:e.color?e.color.length<=4?e.color:e.color.subarray(4*J,4*J+4):[0,0,0,255],opacity:Array.isArray(e.opacity)?e.opacity[J]:e.opacity,baseline:null!=e.baselineOffset[J]?e.baselineOffset[J]:e.baselineOffset[0],align:e.align?null!=e.alignOffset[J]?e.alignOffset[J]:e.alignOffset[0]:0,atlas:e.fontAtlas[J]||e.fontAtlas[0],positionOffset:e.positionOffset.length>2?e.positionOffset.subarray(2*J,2*J+2):e.positionOffset}}else this.count?this.batch=[{count:this.count,offset:0,color:this.color||[0,0,0,255],opacity:Array.isArray(this.opacity)?this.opacity[0]:this.opacity,baseline:this.baselineOffset[0],align:this.alignOffset?this.alignOffset[0]:0,atlas:this.fontAtlas[0],positionOffset:this.positionOffset}]:this.batch=[]},k.prototype.destroy=function(){},k.prototype.kerning=!0,k.prototype.position={constant:new Float32Array(2)},k.prototype.translate=null,k.prototype.scale=null,k.prototype.font=null,k.prototype.text="",k.prototype.positionOffset=[0,0],k.prototype.opacity=1,k.prototype.color=new 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l=d(o,e.stride.slice()),c=0;"float32"===r?c=t.FLOAT:"float64"===r?(c=t.FLOAT,l=!1,r="float32"):"uint8"===r?c=t.UNSIGNED_BYTE:(c=t.UNSIGNED_BYTE,l=!1,r="uint8");var h,p,v=0;if(2===o.length)v=t.LUMINANCE,o=[o[0],o[1],1],e=n(e.data,o,[e.stride[0],e.stride[1],1],e.offset);else{if(3!==o.length)throw new Error("gl-texture2d: Invalid shape for texture");if(1===o[2])v=t.ALPHA;else if(2===o[2])v=t.LUMINANCE_ALPHA;else if(3===o[2])v=t.RGB;else{if(4!==o[2])throw new Error("gl-texture2d: Invalid shape for pixel coords");v=t.RGBA}}c!==t.FLOAT||t.getExtension("OES_texture_float")||(c=t.UNSIGNED_BYTE,l=!1);var m=e.size;if(l)h=0===e.offset&&e.data.length===m?e.data:e.data.subarray(e.offset,e.offset+m);else{var y=[o[2],o[2]*o[0],1];p=a.malloc(m,r);var x=n(p,o,y,0);"float32"!==r&&"float64"!==r||c!==t.UNSIGNED_BYTE?i.assign(x,e):u(x,e),h=p.subarray(0,m)}var b=g(t);t.texImage2D(t.TEXTURE_2D,0,v,o[0],o[1],0,v,c,h),l||a.free(p);return new f(t,b,o[0],o[1],v,c)}(t,e)}throw new Error("gl-texture2d: Invalid 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this._anisoSamples},set:function(t){var e=this._anisoSamples;if(this._anisoSamples=0|Math.max(t,1),e!==this._anisoSamples){var r=this.gl.getExtension("EXT_texture_filter_anisotropic");r&&this.gl.texParameterf(this.gl.TEXTURE_2D,r.TEXTURE_MAX_ANISOTROPY_EXT,this._anisoSamples)}return this._anisoSamples}},wrapS:{get:function(){return this._wrapS},set:function(t){if(this.bind(),l.indexOf(t)<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);return this.gl.texParameteri(this.gl.TEXTURE_2D,this.gl.TEXTURE_WRAP_S,t),this._wrapS=t}},wrapT:{get:function(){return this._wrapT},set:function(t){if(this.bind(),l.indexOf(t)<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);return this.gl.texParameteri(this.gl.TEXTURE_2D,this.gl.TEXTURE_WRAP_T,t),this._wrapT=t}},wrap:{get:function(){return this._wrapVector},set:function(t){if(Array.isArray(t)||(t=[t,t]),2!==t.length)throw new Error("gl-texture2d: Must specify wrap mode for rows and columns");for(var e=0;e<2;++e)if(l.indexOf(t[e])<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);this._wrapS=t[0],this._wrapT=t[1];var r=this.gl;return this.bind(),r.texParameteri(r.TEXTURE_2D,r.TEXTURE_WRAP_S,this._wrapS),r.texParameteri(r.TEXTURE_2D,r.TEXTURE_WRAP_T,this._wrapT),t}},shape:{get:function(){return this._shapeVector},set:function(t){if(Array.isArray(t)){if(2!==t.length)throw new Error("gl-texture2d: Invalid texture shape")}else t=[0|t,0|t];return h(this,0|t[0],0|t[1]),[0|t[0],0|t[1]]}},width:{get:function(){return this._shape[0]},set:function(t){return h(this,t|=0,this._shape[1]),t}},height:{get:function(){return this._shape[1]},set:function(t){return t|=0,h(this,this._shape[0],t),t}}}),p.bind=function(t){var e=this.gl;return void 0!==t&&e.activeTexture(e.TEXTURE0+(0|t)),e.bindTexture(e.TEXTURE_2D,this.handle),void 0!==t?0|t:e.getParameter(e.ACTIVE_TEXTURE)-e.TEXTURE0},p.dispose=function(){this.gl.deleteTexture(this.handle)},p.generateMipmap=function(){this.bind(),this.gl.generateMipmap(this.gl.TEXTURE_2D);for(var t=Math.min(this._shape[0],this._shape[1]),e=0;t>0;++e,t>>>=1)this._mipLevels.indexOf(e)<0&&this._mipLevels.push(e)},p.setPixels=function(t,e,r,o){var s=this.gl;this.bind(),Array.isArray(e)?(o=r,r=0|e[1],e=0|e[0]):(e=e||0,r=r||0),o=o||0;var l=c(t)?t:t.raw;if(l){this._mipLevels.indexOf(o)<0?(s.texImage2D(s.TEXTURE_2D,0,this.format,this.format,this.type,l),this._mipLevels.push(o)):s.texSubImage2D(s.TEXTURE_2D,o,e,r,this.format,this.type,l)}else{if(!(t.shape&&t.stride&&t.data))throw new Error("gl-texture2d: Unsupported data type");if(t.shape.length<2||e+t.shape[1]>this._shape[1]>>>o||r+t.shape[0]>this._shape[0]>>>o||e<0||r<0)throw new Error("gl-texture2d: Texture dimensions are out of bounds");!function(t,e,r,o,s,l,c,h){var f=h.dtype,p=h.shape.slice();if(p.length<2||p.length>3)throw new Error("gl-texture2d: Invalid ndarray, must be 2d or 3d");var g=0,v=0,m=d(p,h.stride.slice());"float32"===f?g=t.FLOAT:"float64"===f?(g=t.FLOAT,m=!1,f="float32"):"uint8"===f?g=t.UNSIGNED_BYTE:(g=t.UNSIGNED_BYTE,m=!1,f="uint8");if(2===p.length)v=t.LUMINANCE,p=[p[0],p[1],1],h=n(h.data,p,[h.stride[0],h.stride[1],1],h.offset);else{if(3!==p.length)throw new Error("gl-texture2d: Invalid shape for texture");if(1===p[2])v=t.ALPHA;else if(2===p[2])v=t.LUMINANCE_ALPHA;else if(3===p[2])v=t.RGB;else{if(4!==p[2])throw new Error("gl-texture2d: Invalid shape for pixel coords");v=t.RGBA}p[2]}v!==t.LUMINANCE&&v!==t.ALPHA||s!==t.LUMINANCE&&s!==t.ALPHA||(v=s);if(v!==s)throw new Error("gl-texture2d: Incompatible texture format for setPixels");var y=h.size,x=c.indexOf(o)<0;x&&c.push(o);if(g===l&&m)0===h.offset&&h.data.length===y?x?t.texImage2D(t.TEXTURE_2D,o,s,p[0],p[1],0,s,l,h.data):t.texSubImage2D(t.TEXTURE_2D,o,e,r,p[0],p[1],s,l,h.data):x?t.texImage2D(t.TEXTURE_2D,o,s,p[0],p[1],0,s,l,h.data.subarray(h.offset,h.offset+y)):t.texSubImage2D(t.TEXTURE_2D,o,e,r,p[0],p[1],s,l,h.data.subarray(h.offset,h.offset+y));else{var b;b=l===t.FLOAT?a.mallocFloat32(y):a.mallocUint8(y);var _=n(b,p,[p[2],p[2]*p[0],1]);g===t.FLOAT&&l===t.UNSIGNED_BYTE?u(_,h):i.assign(_,h),x?t.texImage2D(t.TEXTURE_2D,o,s,p[0],p[1],0,s,l,b.subarray(0,y)):t.texSubImage2D(t.TEXTURE_2D,o,e,r,p[0],p[1],s,l,b.subarray(0,y)),l===t.FLOAT?a.freeFloat32(b):a.freeUint8(b)}}(s,e,r,o,this.format,this.type,this._mipLevels,t)}}},{ndarray:443,"ndarray-ops":437,"typedarray-pool":530}],316:[function(t,e,r){"use strict";var n=t("pick-by-alias");function i(t){if(t.container)if(t.container==document.body)document.body.style.width||(t.canvas.width=t.width||t.pixelRatio*window.innerWidth),document.body.style.height||(t.canvas.height=t.height||t.pixelRatio*window.innerHeight);else{var e=t.container.getBoundingClientRect();t.canvas.width=t.width||e.right-e.left,t.canvas.height=t.height||e.bottom-e.top}}function a(t){return"function"==typeof t.getContext&&"width"in t&&"height"in t}e.exports=function(t){var e;if(t?"string"==typeof t&&(t={container:t}):t={},a(t)?t={container:t}:t="string"==typeof(e=t).nodeName&&"function"==typeof e.appendChild&&"function"==typeof e.getBoundingClientRect?{container:t}:function(t){return"function"==typeof t.drawArrays||"function"==typeof t.drawElements}(t)?{gl:t}:n(t,{container:"container target element el canvas holder parent parentNode wrapper use ref root node",gl:"gl context webgl glContext",attrs:"attributes attrs contextAttributes",pixelRatio:"pixelRatio pxRatio px ratio pxratio 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t[0]=i*l-a*s,t[1]=a*o-n*l,t[2]=n*s-i*o,t}},{}],328:[function(t,e,r){e.exports=t("./distance")},{"./distance":329}],329:[function(t,e,r){e.exports=function(t,e){var r=e[0]-t[0],n=e[1]-t[1],i=e[2]-t[2];return Math.sqrt(r*r+n*n+i*i)}},{}],330:[function(t,e,r){e.exports=t("./divide")},{"./divide":331}],331:[function(t,e,r){e.exports=function(t,e,r){return t[0]=e[0]/r[0],t[1]=e[1]/r[1],t[2]=e[2]/r[2],t}},{}],332:[function(t,e,r){e.exports=function(t,e){return t[0]*e[0]+t[1]*e[1]+t[2]*e[2]}},{}],333:[function(t,e,r){e.exports=1e-6},{}],334:[function(t,e,r){e.exports=function(t,e){var r=t[0],i=t[1],a=t[2],o=e[0],s=e[1],l=e[2];return Math.abs(r-o)<=n*Math.max(1,Math.abs(r),Math.abs(o))&&Math.abs(i-s)<=n*Math.max(1,Math.abs(i),Math.abs(s))&&Math.abs(a-l)<=n*Math.max(1,Math.abs(a),Math.abs(l))};var n=t("./epsilon")},{"./epsilon":333}],335:[function(t,e,r){e.exports=function(t,e){return t[0]===e[0]&&t[1]===e[1]&&t[2]===e[2]}},{}],336:[function(t,e,r){e.exports=function(t,e){return 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Math.ceil(t/e)*e}Wr.serialize=function(t,e){return t._trim(),e&&(t.isTransferred=!0,e.push(t.arrayBuffer)),{length:t.length,arrayBuffer:t.arrayBuffer}},Wr.deserialize=function(t){var e=Object.create(this.prototype);return e.arrayBuffer=t.arrayBuffer,e.length=t.length,e.capacity=t.arrayBuffer.byteLength/e.bytesPerElement,e._refreshViews(),e},Wr.prototype._trim=function(){this.length!==this.capacity&&(this.capacity=this.length,this.arrayBuffer=this.arrayBuffer.slice(0,this.length*this.bytesPerElement),this._refreshViews())},Wr.prototype.clear=function(){this.length=0},Wr.prototype.resize=function(t){this.reserve(t),this.length=t},Wr.prototype.reserve=function(t){if(t>this.capacity){this.capacity=Math.max(t,Math.floor(5*this.capacity),128),this.arrayBuffer=new ArrayBuffer(this.capacity*this.bytesPerElement);var e=this.uint8;this._refreshViews(),e&&this.uint8.set(e)}},Wr.prototype._refreshViews=function(){throw new Error("_refreshViews() must be implemented by each concrete StructArray layout")};var $r=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.int16=new Int16Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e){var r=this.length;this.resize(r+1);var n=2*r;return this.int16[n+0]=t,this.int16[n+1]=e,r},e}(Wr);$r.prototype.bytesPerElement=4,pr("StructArrayLayout2i4",$r);var Jr=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.int16=new Int16Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e,r,n){var i=this.length;this.resize(i+1);var a=4*i;return this.int16[a+0]=t,this.int16[a+1]=e,this.int16[a+2]=r,this.int16[a+3]=n,i},e}(Wr);Jr.prototype.bytesPerElement=8,pr("StructArrayLayout4i8",Jr);var Kr=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.int16=new Int16Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e,r,n,i,a){var o=this.length;this.resize(o+1);var s=6*o;return this.int16[s+0]=t,this.int16[s+1]=e,this.int16[s+2]=r,this.int16[s+3]=n,this.int16[s+4]=i,this.int16[s+5]=a,o},e}(Wr);Kr.prototype.bytesPerElement=12,pr("StructArrayLayout2i4i12",Kr);var Qr=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.int16=new Int16Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e,r,n,i,a,o,s){var l=this.length;this.resize(l+1);var c=6*l,u=12*l;return this.int16[c+0]=t,this.int16[c+1]=e,this.int16[c+2]=r,this.int16[c+3]=n,this.uint8[u+8]=i,this.uint8[u+9]=a,this.uint8[u+10]=o,this.uint8[u+11]=s,l},e}(Wr);Qr.prototype.bytesPerElement=12,pr("StructArrayLayout4i4ub12",Qr);var tn=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.int16=new Int16Array(this.arrayBuffer),this.uint16=new Uint16Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e,r,n,i,a,o,s){var l=this.length;this.resize(l+1);var c=8*l;return this.int16[c+0]=t,this.int16[c+1]=e,this.int16[c+2]=r,this.int16[c+3]=n,this.uint16[c+4]=i,this.uint16[c+5]=a,this.uint16[c+6]=o,this.uint16[c+7]=s,l},e}(Wr);tn.prototype.bytesPerElement=16,pr("StructArrayLayout4i4ui16",tn);var en=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.float32=new Float32Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e,r){var n=this.length;this.resize(n+1);var i=3*n;return this.float32[i+0]=t,this.float32[i+1]=e,this.float32[i+2]=r,n},e}(Wr);en.prototype.bytesPerElement=12,pr("StructArrayLayout3f12",en);var rn=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.uint32=new Uint32Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t){var e=this.length;this.resize(e+1);var r=1*e;return this.uint32[r+0]=t,e},e}(Wr);rn.prototype.bytesPerElement=4,pr("StructArrayLayout1ul4",rn);var nn=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.int16=new Int16Array(this.arrayBuffer),this.uint32=new Uint32Array(this.arrayBuffer),this.uint16=new Uint16Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e,r,n,i,a,o,s,l,c,u){var h=this.length;this.resize(h+1);var f=12*h,p=6*h;return this.int16[f+0]=t,this.int16[f+1]=e,this.int16[f+2]=r,this.int16[f+3]=n,this.int16[f+4]=i,this.int16[f+5]=a,this.uint32[p+3]=o,this.uint16[f+8]=s,this.uint16[f+9]=l,this.int16[f+10]=c,this.int16[f+11]=u,h},e}(Wr);nn.prototype.bytesPerElement=24,pr("StructArrayLayout6i1ul2ui2i24",nn);var an=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.int16=new Int16Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e,r,n,i,a){var o=this.length;this.resize(o+1);var s=6*o;return this.int16[s+0]=t,this.int16[s+1]=e,this.int16[s+2]=r,this.int16[s+3]=n,this.int16[s+4]=i,this.int16[s+5]=a,o},e}(Wr);an.prototype.bytesPerElement=12,pr("StructArrayLayout2i2i2i12",an);var on=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e){var r=this.length;this.resize(r+1);var n=4*r;return this.uint8[n+0]=t,this.uint8[n+1]=e,r},e}(Wr);on.prototype.bytesPerElement=4,pr("StructArrayLayout2ub4",on);var sn=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.int16=new Int16Array(this.arrayBuffer),this.uint16=new Uint16Array(this.arrayBuffer),this.uint32=new Uint32Array(this.arrayBuffer),this.float32=new Float32Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e,r,n,i,a,o,s,l,c,u,h,f,p){var d=this.length;this.resize(d+1);var g=20*d,v=10*d,m=40*d;return this.int16[g+0]=t,this.int16[g+1]=e,this.uint16[g+2]=r,this.uint16[g+3]=n,this.uint32[v+2]=i,this.uint32[v+3]=a,this.uint32[v+4]=o,this.uint16[g+10]=s,this.uint16[g+11]=l,this.uint16[g+12]=c,this.float32[v+7]=u,this.float32[v+8]=h,this.uint8[m+36]=f,this.uint8[m+37]=p,d},e}(Wr);sn.prototype.bytesPerElement=40,pr("StructArrayLayout2i2ui3ul3ui2f2ub40",sn);var ln=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.float32=new Float32Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t){var e=this.length;this.resize(e+1);var r=1*e;return this.float32[r+0]=t,e},e}(Wr);ln.prototype.bytesPerElement=4,pr("StructArrayLayout1f4",ln);var cn=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.int16=new Int16Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e,r){var n=this.length;this.resize(n+1);var i=3*n;return this.int16[i+0]=t,this.int16[i+1]=e,this.int16[i+2]=r,n},e}(Wr);cn.prototype.bytesPerElement=6,pr("StructArrayLayout3i6",cn);var un=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.uint32=new Uint32Array(this.arrayBuffer),this.uint16=new Uint16Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e,r){var n=this.length;this.resize(n+1);var i=2*n,a=4*n;return this.uint32[i+0]=t,this.uint16[a+2]=e,this.uint16[a+3]=r,n},e}(Wr);un.prototype.bytesPerElement=8,pr("StructArrayLayout1ul2ui8",un);var hn=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.uint16=new Uint16Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e,r){var n=this.length;this.resize(n+1);var i=3*n;return this.uint16[i+0]=t,this.uint16[i+1]=e,this.uint16[i+2]=r,n},e}(Wr);hn.prototype.bytesPerElement=6,pr("StructArrayLayout3ui6",hn);var fn=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.uint16=new Uint16Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e){var r=this.length;this.resize(r+1);var n=2*r;return this.uint16[n+0]=t,this.uint16[n+1]=e,r},e}(Wr);fn.prototype.bytesPerElement=4,pr("StructArrayLayout2ui4",fn);var pn=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.float32=new Float32Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e){var r=this.length;this.resize(r+1);var n=2*r;return this.float32[n+0]=t,this.float32[n+1]=e,r},e}(Wr);pn.prototype.bytesPerElement=8,pr("StructArrayLayout2f8",pn);var dn=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype._refreshViews=function(){this.uint8=new Uint8Array(this.arrayBuffer),this.float32=new Float32Array(this.arrayBuffer)},e.prototype.emplaceBack=function(t,e,r,n){var i=this.length;this.resize(i+1);var a=4*i;return this.float32[a+0]=t,this.float32[a+1]=e,this.float32[a+2]=r,this.float32[a+3]=n,i},e}(Wr);dn.prototype.bytesPerElement=16,pr("StructArrayLayout4f16",dn);var gn=function(t){function e(){t.apply(this,arguments)}t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e;var r={anchorPointX:{configurable:!0},anchorPointY:{configurable:!0},x1:{configurable:!0},y1:{configurable:!0},x2:{configurable:!0},y2:{configurable:!0},featureIndex:{configurable:!0},sourceLayerIndex:{configurable:!0},bucketIndex:{configurable:!0},radius:{configurable:!0},signedDistanceFromAnchor:{configurable:!0},anchorPoint:{configurable:!0}};return r.anchorPointX.get=function(){return this._structArray.int16[this._pos2+0]},r.anchorPointX.set=function(t){this._structArray.int16[this._pos2+0]=t},r.anchorPointY.get=function(){return this._structArray.int16[this._pos2+1]},r.anchorPointY.set=function(t){this._structArray.int16[this._pos2+1]=t},r.x1.get=function(){return this._structArray.int16[this._pos2+2]},r.x1.set=function(t){this._structArray.int16[this._pos2+2]=t},r.y1.get=function(){return this._structArray.int16[this._pos2+3]},r.y1.set=function(t){this._structArray.int16[this._pos2+3]=t},r.x2.get=function(){return this._structArray.int16[this._pos2+4]},r.x2.set=function(t){this._structArray.int16[this._pos2+4]=t},r.y2.get=function(){return this._structArray.int16[this._pos2+5]},r.y2.set=function(t){this._structArray.int16[this._pos2+5]=t},r.featureIndex.get=function(){return this._structArray.uint32[this._pos4+3]},r.featureIndex.set=function(t){this._structArray.uint32[this._pos4+3]=t},r.sourceLayerIndex.get=function(){return this._structArray.uint16[this._pos2+8]},r.sourceLayerIndex.set=function(t){this._structArray.uint16[this._pos2+8]=t},r.bucketIndex.get=function(){return this._structArray.uint16[this._pos2+9]},r.bucketIndex.set=function(t){this._structArray.uint16[this._pos2+9]=t},r.radius.get=function(){return this._structArray.int16[this._pos2+10]},r.radius.set=function(t){this._structArray.int16[this._pos2+10]=t},r.signedDistanceFromAnchor.get=function(){return this._structArray.int16[this._pos2+11]},r.signedDistanceFromAnchor.set=function(t){this._structArray.int16[this._pos2+11]=t},r.anchorPoint.get=function(){return new l(this.anchorPointX,this.anchorPointY)},Object.defineProperties(e.prototype,r),e}(Yr);gn.prototype.size=24;var vn=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype.get=function(t){return new gn(this,t)},e}(nn);pr("CollisionBoxArray",vn);var mn=function(t){function e(){t.apply(this,arguments)}t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e;var r={anchorX:{configurable:!0},anchorY:{configurable:!0},glyphStartIndex:{configurable:!0},numGlyphs:{configurable:!0},vertexStartIndex:{configurable:!0},lineStartIndex:{configurable:!0},lineLength:{configurable:!0},segment:{configurable:!0},lowerSize:{configurable:!0},upperSize:{configurable:!0},lineOffsetX:{configurable:!0},lineOffsetY:{configurable:!0},writingMode:{configurable:!0},hidden:{configurable:!0}};return r.anchorX.get=function(){return this._structArray.int16[this._pos2+0]},r.anchorX.set=function(t){this._structArray.int16[this._pos2+0]=t},r.anchorY.get=function(){return this._structArray.int16[this._pos2+1]},r.anchorY.set=function(t){this._structArray.int16[this._pos2+1]=t},r.glyphStartIndex.get=function(){return this._structArray.uint16[this._pos2+2]},r.glyphStartIndex.set=function(t){this._structArray.uint16[this._pos2+2]=t},r.numGlyphs.get=function(){return this._structArray.uint16[this._pos2+3]},r.numGlyphs.set=function(t){this._structArray.uint16[this._pos2+3]=t},r.vertexStartIndex.get=function(){return this._structArray.uint32[this._pos4+2]},r.vertexStartIndex.set=function(t){this._structArray.uint32[this._pos4+2]=t},r.lineStartIndex.get=function(){return this._structArray.uint32[this._pos4+3]},r.lineStartIndex.set=function(t){this._structArray.uint32[this._pos4+3]=t},r.lineLength.get=function(){return this._structArray.uint32[this._pos4+4]},r.lineLength.set=function(t){this._structArray.uint32[this._pos4+4]=t},r.segment.get=function(){return this._structArray.uint16[this._pos2+10]},r.segment.set=function(t){this._structArray.uint16[this._pos2+10]=t},r.lowerSize.get=function(){return this._structArray.uint16[this._pos2+11]},r.lowerSize.set=function(t){this._structArray.uint16[this._pos2+11]=t},r.upperSize.get=function(){return this._structArray.uint16[this._pos2+12]},r.upperSize.set=function(t){this._structArray.uint16[this._pos2+12]=t},r.lineOffsetX.get=function(){return this._structArray.float32[this._pos4+7]},r.lineOffsetX.set=function(t){this._structArray.float32[this._pos4+7]=t},r.lineOffsetY.get=function(){return this._structArray.float32[this._pos4+8]},r.lineOffsetY.set=function(t){this._structArray.float32[this._pos4+8]=t},r.writingMode.get=function(){return this._structArray.uint8[this._pos1+36]},r.writingMode.set=function(t){this._structArray.uint8[this._pos1+36]=t},r.hidden.get=function(){return this._structArray.uint8[this._pos1+37]},r.hidden.set=function(t){this._structArray.uint8[this._pos1+37]=t},Object.defineProperties(e.prototype,r),e}(Yr);mn.prototype.size=40;var yn=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype.get=function(t){return new mn(this,t)},e}(sn);pr("PlacedSymbolArray",yn);var xn=function(t){function e(){t.apply(this,arguments)}t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e;var r={offsetX:{configurable:!0}};return r.offsetX.get=function(){return this._structArray.float32[this._pos4+0]},r.offsetX.set=function(t){this._structArray.float32[this._pos4+0]=t},Object.defineProperties(e.prototype,r),e}(Yr);xn.prototype.size=4;var bn=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype.getoffsetX=function(t){return this.float32[1*t+0]},e.prototype.get=function(t){return new xn(this,t)},e}(ln);pr("GlyphOffsetArray",bn);var _n=function(t){function e(){t.apply(this,arguments)}t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e;var r={x:{configurable:!0},y:{configurable:!0},tileUnitDistanceFromAnchor:{configurable:!0}};return r.x.get=function(){return this._structArray.int16[this._pos2+0]},r.x.set=function(t){this._structArray.int16[this._pos2+0]=t},r.y.get=function(){return this._structArray.int16[this._pos2+1]},r.y.set=function(t){this._structArray.int16[this._pos2+1]=t},r.tileUnitDistanceFromAnchor.get=function(){return this._structArray.int16[this._pos2+2]},r.tileUnitDistanceFromAnchor.set=function(t){this._structArray.int16[this._pos2+2]=t},Object.defineProperties(e.prototype,r),e}(Yr);_n.prototype.size=6;var wn=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype.getx=function(t){return this.int16[3*t+0]},e.prototype.gety=function(t){return this.int16[3*t+1]},e.prototype.gettileUnitDistanceFromAnchor=function(t){return this.int16[3*t+2]},e.prototype.get=function(t){return new _n(this,t)},e}(cn);pr("SymbolLineVertexArray",wn);var kn=function(t){function e(){t.apply(this,arguments)}t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e;var r={featureIndex:{configurable:!0},sourceLayerIndex:{configurable:!0},bucketIndex:{configurable:!0}};return r.featureIndex.get=function(){return this._structArray.uint32[this._pos4+0]},r.featureIndex.set=function(t){this._structArray.uint32[this._pos4+0]=t},r.sourceLayerIndex.get=function(){return this._structArray.uint16[this._pos2+2]},r.sourceLayerIndex.set=function(t){this._structArray.uint16[this._pos2+2]=t},r.bucketIndex.get=function(){return this._structArray.uint16[this._pos2+3]},r.bucketIndex.set=function(t){this._structArray.uint16[this._pos2+3]=t},Object.defineProperties(e.prototype,r),e}(Yr);kn.prototype.size=8;var An=function(t){function e(){t.apply(this,arguments)}return t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e,e.prototype.get=function(t){return new kn(this,t)},e}(un);pr("FeatureIndexArray",An);var 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a={},o=e;o0},Ha.prototype.hasIconData=function(){return this.icon.segments.get().length>0},Ha.prototype.hasCollisionBoxData=function(){return this.collisionBox.segments.get().length>0},Ha.prototype.hasCollisionCircleData=function(){return this.collisionCircle.segments.get().length>0},Ha.prototype.sortFeatures=function(t){var e=this;if(this.sortFeaturesByY&&this.sortedAngle!==t&&(this.sortedAngle=t,!(this.text.segments.get().length>1||this.icon.segments.get().length>1))){for(var r=[],n=0;ni.maxh||t>i.maxw||r<=i.maxh&&t<=i.maxw&&(o=i.maxw*i.maxh-t*r)a.free)){if(r===a.h)return this.allocShelf(s,t,r,n);r>a.h||ru)&&(h=2*Math.max(t,u)),(ll)&&(c=2*Math.max(r,l)),this.resize(h,c),this.packOne(t,r,n)):null},t.prototype.allocFreebin=function(t,e,r,n){var i=this.freebins.splice(t,1)[0];return i.id=n,i.w=e,i.h=r,i.refcount=0,this.bins[n]=i,this.ref(i),i},t.prototype.allocShelf=function(t,e,r,n){var i=this.shelves[t].alloc(e,r,n);return 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r=(7&t)<<4;e.buf[e.pos++]|=r|((t>>>=3)?128:0),t&&(e.buf[e.pos++]=127&t|((t>>>=7)?128:0),t&&(e.buf[e.pos++]=127&t|((t>>>=7)?128:0),t&&(e.buf[e.pos++]=127&t|((t>>>=7)?128:0),t&&(e.buf[e.pos++]=127&t|((t>>>=7)?128:0),t&&(e.buf[e.pos++]=127&t)))))}(n,e)}(t,this):(this.realloc(4),this.buf[this.pos++]=127&t|(t>127?128:0),t<=127||(this.buf[this.pos++]=127&(t>>>=7)|(t>127?128:0),t<=127||(this.buf[this.pos++]=127&(t>>>=7)|(t>127?128:0),t<=127||(this.buf[this.pos++]=t>>>7&127))))},writeSVarint:function(t){this.writeVarint(t<0?2*-t-1:2*t)},writeBoolean:function(t){this.writeVarint(Boolean(t))},writeString:function(t){t=String(t),this.realloc(4*t.length),this.pos++;var e=this.pos;this.pos=function(t,e,r){for(var n,i,a=0;a55295&&n<57344){if(!i){n>56319||a+1===e.length?(t[r++]=239,t[r++]=191,t[r++]=189):i=n;continue}if(n<56320){t[r++]=239,t[r++]=191,t[r++]=189,i=n;continue}n=i-55296<<10|n-56320|65536,i=null}else 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r=0;r=128&&lo(r,n,this),this.pos=r-1,this.writeVarint(n),this.pos+=n},writeMessage:function(t,e,r){this.writeTag(t,ao.Bytes),this.writeRawMessage(e,r)},writePackedVarint:function(t,e){this.writeMessage(t,co,e)},writePackedSVarint:function(t,e){this.writeMessage(t,uo,e)},writePackedBoolean:function(t,e){this.writeMessage(t,po,e)},writePackedFloat:function(t,e){this.writeMessage(t,ho,e)},writePackedDouble:function(t,e){this.writeMessage(t,fo,e)},writePackedFixed32:function(t,e){this.writeMessage(t,go,e)},writePackedSFixed32:function(t,e){this.writeMessage(t,vo,e)},writePackedFixed64:function(t,e){this.writeMessage(t,mo,e)},writePackedSFixed64:function(t,e){this.writeMessage(t,yo,e)},writeBytesField:function(t,e){this.writeTag(t,ao.Bytes),this.writeBytes(e)},writeFixed32Field:function(t,e){this.writeTag(t,ao.Fixed32),this.writeFixed32(e)},writeSFixed32Field:function(t,e){this.writeTag(t,ao.Fixed32),this.writeSFixed32(e)},writeFixed64Field:function(t,e){this.writeTag(t,ao.Fixed64),this.writeFixed64(e)},writeSFixed64Field:function(t,e){this.writeTag(t,ao.Fixed64),this.writeSFixed64(e)},writeVarintField:function(t,e){this.writeTag(t,ao.Varint),this.writeVarint(e)},writeSVarintField:function(t,e){this.writeTag(t,ao.Varint),this.writeSVarint(e)},writeStringField:function(t,e){this.writeTag(t,ao.Bytes),this.writeString(e)},writeFloatField:function(t,e){this.writeTag(t,ao.Fixed32),this.writeFloat(e)},writeDoubleField:function(t,e){this.writeTag(t,ao.Fixed64),this.writeDouble(e)},writeBooleanField:function(t,e){this.writeVarintField(t,Boolean(e))}};var 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0===t.overscaledZ||t.overscaledZ>e&&t.canonical.y===this.canonical.y>>e},zo.prototype.children=function(t){if(this.overscaledZ>=t)return[new zo(this.overscaledZ+1,this.wrap,this.canonical.z,this.canonical.x,this.canonical.y)];var e=this.canonical.z+1,r=2*this.canonical.x,n=2*this.canonical.y;return[new zo(e,this.wrap,e,r,n),new zo(e,this.wrap,e,r+1,n),new zo(e,this.wrap,e,r,n+1),new zo(e,this.wrap,e,r+1,n+1)]},zo.prototype.isLessThan=function(t){return this.wrapt.wrap)&&(this.overscaledZt.overscaledZ)&&(this.canonical.xt.canonical.x)&&this.canonical.y=this.dim+this.border||e<-this.border||e>=this.dim+this.border)throw new RangeError("out of range source coordinates for DEM data");return(e+this.border)*this.stride+(t+this.border)},pr("Level",Io);var Do=function(t,e,r){this.uid=t,this.scale=e||1,this.level=r||new Io(256,512),this.loaded=!!r};Do.prototype.loadFromImage=function(t,e){if(t.height!==t.width)throw new RangeError("DEM tiles must be square");if(e&&"mapbox"!==e&&"terrarium"!==e)return _('"'+e+'" is not a valid encoding type. Valid types include "mapbox" and "terrarium".');var r=this.level=new Io(t.width,t.width/2),n=t.data;this._unpackData(r,n,e||"mapbox");for(var i=0;i=0&&l[3]>=0&&this.grid.insert(a,l[0],l[1],l[2],l[3])}},Bo.prototype.loadVTLayers=function(){return this.vtLayers||(this.vtLayers=new ga.VectorTile(new io(this.rawTileData)).layers,this.sourceLayerCoder=new Po(this.vtLayers?Object.keys(this.vtLayers).sort():["_geojsonTileLayer"])),this.vtLayers},Bo.prototype.query=function(t,e){var r=this;this.loadVTLayers();for(var n=t.params||{},i=Pn/t.tileSize/t.scale,a=Re(n.filter),o=t.queryGeometry,s=t.queryPadding*i,l=1/0,c=1/0,u=-1/0,h=-1/0,f=0;f=0)return!0;return!1}(a,l)){var c=this.sourceLayerCoder.decode(r),u=this.vtLayers[c].feature(n);if(i(new Lr(this.tileID.overscaledZ),u))for(var h=0;h=200&&r.status<300&&r.response){var n;try{n=JSON.parse(r.response)}catch(t){return e(t)}e(null,n)}else 401===r.status&&t.url.match(/mapbox.com/)?e(new T(r.statusText+": you may have provided an invalid Mapbox access token. See https://www.mapbox.com/api-documentation/#access-tokens",r.status,t.url)):e(new T(r.statusText,r.status,t.url))},r.send(),r},e.getImage=function(t,e){return S(t,function(t,r){if(t)e(t);else if(r){var n=new self.Image,i=self.URL||self.webkitURL;n.onload=function(){e(null,n),i.revokeObjectURL(n.src)};var a=new self.Blob([new Uint8Array(r.data)],{type:"image/png"});n.cacheControl=r.cacheControl,n.expires=r.expires,n.src=r.data.byteLength?i.createObjectURL(a):"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAYAAAAfFcSJAAAAC0lEQVQYV2NgAAIAAAUAAarVyFEAAAAASUVORK5CYII="}})},e.ResourceType=A,e.RGBAImage=ui,e.default$2=Ka,e.ImagePosition=Qa,e.getArrayBuffer=S,e.default$3=function(t){return new io(t).readFields(ko,[])},e.default$4=yr,e.asyncAll=function(t,e,r){if(!t.length)return r(null,[]);var n=t.length,i=new Array(t.length),a=null;t.forEach(function(t,o){e(t,function(t,e){t&&(a=t),i[o]=e,0==--n&&r(a,i)})})},e.AlphaImage=ci,e.default$5=I,e.endsWith=v,e.extend=p,e.sphericalToCartesian=function(t){var e=t[0],r=t[1],n=t[2];return r+=90,r*=Math.PI/180,n*=Math.PI/180,{x:e*Math.cos(r)*Math.sin(n),y:e*Math.sin(r)*Math.sin(n),z:e*Math.cos(n)}},e.Evented=O,e.validateStyle=nr,e.validateLight=ir,e.emitValidationErrors=sr,e.default$6=tt,e.number=wt,e.Properties=qr,e.Transitionable=Ir,e.Transitioning=Pr,e.PossiblyEvaluated=Br,e.DataConstantProperty=Nr,e.warnOnce=_,e.uniqueId=function(){return d++},e.default$7=So,e.pick=function(t,e){for(var r={},n=0;n@\,;\:\\"\/\[\]\?\=\{\}\x7F]+)(?:\=(?:([^\x00-\x20\(\)<>@\,;\:\\"\/\[\]\?\=\{\}\x7F]+)|(?:\"((?:[^"\\]|\\.)*)\")))?/g,function(t,r,n,i){var a=n||i;return e[r]=!a||a.toLowerCase(),""}),e["max-age"]){var r=parseInt(e["max-age"],10);isNaN(r)?delete e["max-age"]:e["max-age"]=r}return e},e.default$11=Bo,e.default$12=Ro,e.default$13=Re,e.default$14=Ha,e.CollisionBoxArray=vn,e.default$15=Mn,e.TriangleIndexArray=hn,e.default$16=Lr,e.default$17=s,e.keysDifference=function(t,e){var r=[];for(var n in t)n in e||r.push(n);return r},e.default$18=["type","source","source-layer","minzoom","maxzoom","filter","layout"],e.mat4=ri,e.vec4=ei,e.getSizeData=Fa,e.evaluateSizeForFeature=function(t,e,r){var n=e;return"source"===t.functionType?r.lowerSize/10:"composite"===t.functionType?wt(r.lowerSize/10,r.upperSize/10,n.uSizeT):n.uSize},e.evaluateSizeForZoom=function(t,e,r){if("constant"===t.functionType)return{uSizeT:0,uSize:t.layoutSize};if("source"===t.functionType)return{uSizeT:0,uSize:0};if("camera"===t.functionType){var n=t.propertyValue,i=t.zoomRange,a=t.sizeRange,o=f(Se(n,r.specification).interpolationFactor(e,i.min,i.max),0,1);return{uSizeT:0,uSize:a.min+o*(a.max-a.min)}}var s=t.propertyValue,l=t.zoomRange;return{uSizeT:f(Se(s,r.specification).interpolationFactor(e,l.min,l.max),0,1),uSize:0}},e.addDynamicAttributes=Va,e.default$19=Ya,e.WritingMode=jo,e.multiPolygonIntersectsBufferedPoint=jn,e.multiPolygonIntersectsMultiPolygon=Vn,e.multiPolygonIntersectsBufferedMultiLine=Un,e.polygonIntersectsPolygon=function(t,e){for(var r=0;r-r/2;){if(--o<0)return!1;s-=t[o].dist(a),a=t[o]}s+=t[o].dist(t[o+1]),o++;for(var l=[],c=0;sn;)c-=l.shift().angleDelta;if(c>i)return!1;o++,s+=h.dist(f)}return!0}function a(e,r,n,a,o,s,l,c,u){var h=a?.6*s*l:0,f=Math.max(a?a.right-a.left:0,o?o.right-o.left:0),p=0===e[0].x||e[0].x===u||0===e[0].y||e[0].y===u;return r-f*l=0&&A=0&&T=0&&v+f<=p){var M=new t.default$25(A,T,w,y);M._round(),o&&!i(r,M,l,o,s)||m.push(M)}}g+=_}return u||m.length||c||(m=e(r,g/2,a,o,s,l,c,!0,h)),m}(e,p?r/2*c%r:(f/2+2*s)*l*c%r,r,h,n,f*l,p,!1,u)}n.prototype.replace=function(t){this._layerConfigs={},this._layers={},this.update(t,[])},n.prototype.update=function(e,n){for(var i=this,a=0,o=e;a0&&(g=Math.max(10*s,g),this._addLineCollisionCircles(t,e,r,r.segment,v,g,n,i,a,u))}else t.emplaceBack(r.x,r.y,p,h,d,f,n,i,a,0,0);this.boxEndIndex=t.length};s.prototype._addLineCollisionCircles=function(t,e,r,n,i,a,o,s,l,c){var u=a/2,h=Math.floor(i/u),f=1+.4*Math.log(c)/Math.LN2,p=Math.floor(h*f/2),d=-a/2,g=r,v=n+1,m=d,y=-i/2,x=y-i/4;do{if(--v<0){if(m>y)return;v=0;break}m-=e[v].dist(g),g=e[v]}while(m>x);for(var b=e[v].dist(e[v+1]),_=-p;_i&&(k+=w-i),!(k=e.length)return;b=e[v].dist(e[v+1])}var A=k-m,T=e[v],M=e[v+1].sub(T)._unit()._mult(A)._add(T)._round(),S=Math.abs(k-d)0)for(var r=(this.length>>1)-1;r>=0;r--)this._down(r)}function h(t,e){return te?1:0}function f(e,r,n){void 0===r&&(r=1),void 0===n&&(n=!1);for(var i=1/0,a=1/0,o=-1/0,s=-1/0,c=e[0],u=0;uo)&&(o=h.x),(!u||h.y>s)&&(s=h.y)}var f=o-i,g=s-a,v=Math.min(f,g),m=v/2,y=new l(null,p);if(0===v)return new t.default$1(i,a);for(var x=i;x_.d||!_.d)&&(_=k,n&&console.log("found best %d after %d probes",Math.round(1e4*k.d)/1e4,w)),k.max-_.d<=r||(m=k.h/2,y.push(new d(k.p.x-m,k.p.y-m,m,e)),y.push(new d(k.p.x+m,k.p.y-m,m,e)),y.push(new d(k.p.x-m,k.p.y+m,m,e)),y.push(new d(k.p.x+m,k.p.y+m,m,e)),w+=4)}return n&&(console.log("num probes: "+w),console.log("best distance: "+_.d)),_.p}function p(t,e){return e.max-t.max}function d(e,r,n,i){this.p=new t.default$1(e,r),this.h=n,this.d=function(e,r){for(var n=!1,i=1/0,a=0;ae.y!=h.y>e.y&&e.x<(h.x-u.x)*(e.y-u.y)/(h.y-u.y)+u.x&&(n=!n),i=Math.min(i,t.distToSegmentSquared(e,u,h))}return(n?1:-1)*Math.sqrt(i)}(this.p,i),this.max=this.d+this.h*Math.SQRT2}function g(e,r,n,i,a,o){e.createArrays(),e.symbolInstances=[];var s=512*e.overscaling;e.tilePixelRatio=t.default$8/s,e.compareText={},e.iconsNeedLinear=!1;var l=e.layers[0].layout,c=e.layers[0]._unevaluatedLayout._values,u={};if("composite"===e.textSizeData.functionType){var h=e.textSizeData.zoomRange,f=h.min,p=h.max;u.compositeTextSizes=[c["text-size"].possiblyEvaluate(new t.default$16(f)),c["text-size"].possiblyEvaluate(new t.default$16(p))]}if("composite"===e.iconSizeData.functionType){var d=e.iconSizeData.zoomRange,g=d.min,m=d.max;u.compositeIconSizes=[c["icon-size"].possiblyEvaluate(new t.default$16(g)),c["icon-size"].possiblyEvaluate(new t.default$16(m))]}u.layoutTextSize=c["text-size"].possiblyEvaluate(new t.default$16(e.zoom+1)),u.layoutIconSize=c["icon-size"].possiblyEvaluate(new t.default$16(e.zoom+1)),u.textMaxSize=c["text-size"].possiblyEvaluate(new t.default$16(18));for(var y=24*l.get("text-line-height"),x="map"===l.get("text-rotation-alignment")&&"line"===l.get("symbol-placement"),b=l.get("text-keep-upright"),_=0,w=e.features;_=t.default$8||u.y<0||u.y>=t.default$8||e.symbolInstances.push(function(e,r,n,i,a,l,c,u,h,f,p,d,g,v,y,x,b,_,w,k,A){var T,M,S=e.addToLineVertexArray(r,n),E=0,C=0,L=0,z=i.horizontal?i.horizontal.text:"",O=[];i.horizontal&&(T=new s(c,n,r,u,h,f,i.horizontal,p,d,g,e.overscaling),C+=m(e,r,i.horizontal,l,g,w,v,S,i.vertical?t.WritingMode.horizontal:t.WritingMode.horizontalOnly,O,k,A),i.vertical&&(L+=m(e,r,i.vertical,l,g,w,v,S,t.WritingMode.vertical,O,k,A)));var I=T?T.boxStartIndex:e.collisionBoxArray.length,D=T?T.boxEndIndex:e.collisionBoxArray.length;if(a){var P=function(e,r,n,i,a,o){var s,l,c,u,h=r.image,f=n.layout,p=r.top-1/h.pixelRatio,d=r.left-1/h.pixelRatio,g=r.bottom+1/h.pixelRatio,v=r.right+1/h.pixelRatio;if("none"!==f.get("icon-text-fit")&&a){var m=v-d,y=g-p,x=f.get("text-size").evaluate(o)/24,b=a.left*x,_=a.right*x,w=a.top*x,k=_-b,A=a.bottom*x-w,T=f.get("icon-text-fit-padding")[0],M=f.get("icon-text-fit-padding")[1],S=f.get("icon-text-fit-padding")[2],E=f.get("icon-text-fit-padding")[3],C="width"===f.get("icon-text-fit")?.5*(A-y):0,L="height"===f.get("icon-text-fit")?.5*(k-m):0,z="width"===f.get("icon-text-fit")||"both"===f.get("icon-text-fit")?k:m,O="height"===f.get("icon-text-fit")||"both"===f.get("icon-text-fit")?A:y;s=new t.default$1(b+L-E,w+C-T),l=new t.default$1(b+L+M+z,w+C-T),c=new t.default$1(b+L+M+z,w+C+S+O),u=new t.default$1(b+L-E,w+C+S+O)}else s=new t.default$1(d,p),l=new t.default$1(v,p),c=new t.default$1(v,g),u=new t.default$1(d,g);var I=n.layout.get("icon-rotate").evaluate(o)*Math.PI/180;if(I){var D=Math.sin(I),P=Math.cos(I),R=[P,-D,D,P];s._matMult(R),l._matMult(R),u._matMult(R),c._matMult(R)}return[{tl:s,tr:l,bl:u,br:c,tex:h.paddedRect,writingMode:void 0,glyphOffset:[0,0]}]}(0,a,l,0,i.horizontal,w);M=new s(c,n,r,u,h,f,a,y,x,!1,e.overscaling),E=4*P.length;var R=e.iconSizeData,F=null;"source"===R.functionType?F=[10*l.layout.get("icon-size").evaluate(w)]:"composite"===R.functionType&&(F=[10*A.compositeIconSizes[0].evaluate(w),10*A.compositeIconSizes[1].evaluate(w)]),e.addSymbols(e.icon,P,F,_,b,w,!1,r,S.lineStartIndex,S.lineLength)}var B=M?M.boxStartIndex:e.collisionBoxArray.length,N=M?M.boxEndIndex:e.collisionBoxArray.length;return e.glyphOffsetArray.length>=t.default$14.MAX_GLYPHS&&t.warnOnce("Too many glyphs being rendered in a tile. See https://github.com/mapbox/mapbox-gl-js/issues/2907"),{key:z,textBoxStartIndex:I,textBoxEndIndex:D,iconBoxStartIndex:B,iconBoxEndIndex:N,textOffset:v,iconOffset:_,anchor:r,line:n,featureIndex:u,feature:w,numGlyphVertices:C,numVerticalGlyphVertices:L,numIconVertices:E,textOpacityState:new o,iconOpacityState:new o,isDuplicate:!1,placedTextSymbolIndices:O,crossTileID:0}}(e,u,a,n,i,e.layers[0],e.collisionBoxArray,r.index,r.sourceLayerIndex,e.index,b,A,S,g,w,T,E,v,r,l,c))};if("line"===d.get("symbol-placement"))for(var z=0,O=function(e,r,n,i,a){for(var o=[],s=0;s=i&&f.x>=i||(h.x>=i?h=new t.default$1(i,h.y+(f.y-h.y)*((i-h.x)/(f.x-h.x)))._round():f.x>=i&&(f=new t.default$1(i,h.y+(f.y-h.y)*((i-h.x)/(f.x-h.x)))._round()),h.y>=a&&f.y>=a||(h.y>=a?h=new t.default$1(h.x+(f.x-h.x)*((a-h.y)/(f.y-h.y)),a)._round():f.y>=a&&(f=new t.default$1(h.x+(f.x-h.x)*((a-h.y)/(f.y-h.y)),a)._round()),c&&h.equals(c[c.length-1])||(c=[h],o.push(c)),c.push(f)))))}return o}(r.geometry,0,0,t.default$8,t.default$8);z=0;o--)if(n.dist(a[o])0&&(this.data[0]=this.data[this.length],this._down(0)),this.data.pop(),t}},peek:function(){return this.data[0]},_up:function(t){for(var e=this.data,r=this.compare,n=e[t];t>0;){var i=t-1>>1,a=e[i];if(r(n,a)>=0)break;e[t]=a,t=i}e[t]=n},_down:function(t){for(var e=this.data,r=this.compare,n=this.length>>1,i=e[t];t=0)break;e[t]=s,t=a}e[t]=i}},l.default=c;var x=function(e){var r=new t.AlphaImage({width:0,height:0}),n={},i=new t.default$2(0,0,{autoResize:!0});for(var a in e){var o=e[a],s=n[a]={};for(var l in o){var c=o[+l];if(c&&0!==c.bitmap.width&&0!==c.bitmap.height){var u=i.packOne(c.bitmap.width+2,c.bitmap.height+2);r.resize({width:i.w,height:i.h}),t.AlphaImage.copy(c.bitmap,r,{x:0,y:0},{x:u.x+1,y:u.y+1},c.bitmap),s[l]={rect:u,metrics:c.metrics}}}}i.shrink(),r.resize({width:i.w,height:i.h}),this.image=r,this.positions=n};t.register("GlyphAtlas",x);var b=function(e){this.tileID=new t.OverscaledTileID(e.tileID.overscaledZ,e.tileID.wrap,e.tileID.canonical.z,e.tileID.canonical.x,e.tileID.canonical.y),this.uid=e.uid,this.zoom=e.zoom,this.pixelRatio=e.pixelRatio,this.tileSize=e.tileSize,this.source=e.source,this.overscaling=this.tileID.overscaleFactor(),this.showCollisionBoxes=e.showCollisionBoxes,this.collectResourceTiming=!!e.collectResourceTiming};function _(e,r){for(var n=new t.default$16(r),i=0,a=e;i=M.maxzoom||"none"!==M.visibility&&(_(T,a.zoom),(h[M.id]=M.createBucket({index:s.bucketLayerIDs.length,layers:T,zoom:a.zoom,pixelRatio:a.pixelRatio,overscaling:a.overscaling,collisionBoxArray:a.collisionBoxArray,sourceLayerIndex:m})).populate(y,f),s.bucketLayerIDs.push(T.map(function(t){return t.id})))}}}var S=t.mapObject(f.glyphDependencies,function(t){return Object.keys(t).map(Number)});Object.keys(S).length?n.send("getGlyphs",{uid:this.uid,stacks:S},function(t,e){l||(l=t,c=e,C.call(a))}):c={};var E=Object.keys(f.iconDependencies);function C(){if(l)return i(l);if(c&&u){var e=new x(c),r=new t.default$28(u);for(var n in h){var a=h[n];a instanceof t.default$14&&(_(a.layers,this.zoom),g(a,c,e.positions,u,r.positions,this.showCollisionBoxes))}this.status="done",i(null,{buckets:t.values(h).filter(function(t){return!t.isEmpty()}),featureIndex:s,collisionBoxArray:this.collisionBoxArray,glyphAtlasImage:e.image,iconAtlasImage:r.image})}}E.length?n.send("getImages",{icons:E},function(t,e){l||(l=t,u=e,C.call(a))}):u={},C.call(this)};var w=function(t){return!(!performance||!performance.getEntriesByName)&&performance.getEntriesByName(t)};function k(e,r){var n=t.getArrayBuffer(e.request,function(e,n){e?r(e):n&&r(null,{vectorTile:new t.default$29.VectorTile(new t.default$30(n.data)),rawData:n.data,cacheControl:n.cacheControl,expires:n.expires})});return function(){n.abort(),r()}}var A=function(t,e,r){this.actor=t,this.layerIndex=e,this.loadVectorData=r||k,this.loading={},this.loaded={}};A.prototype.loadTile=function(e,r){var n=this,i=e.uid;this.loading||(this.loading={});var a=this.loading[i]=new b(e);a.abort=this.loadVectorData(e,function(o,s){if(delete n.loading[i],o||!s)return r(o);var l=s.rawData,c={};s.expires&&(c.expires=s.expires),s.cacheControl&&(c.cacheControl=s.cacheControl);var u={};if(e.request&&e.request.collectResourceTiming){var h=w(e.request.url);h&&(u.resourceTiming=JSON.parse(JSON.stringify(h)))}a.vectorTile=s.vectorTile,a.parse(s.vectorTile,n.layerIndex,n.actor,function(e,n){if(e||!n)return r(e);r(null,t.extend({rawTileData:l.slice(0)},n,c,u))}),n.loaded=n.loaded||{},n.loaded[i]=a})},A.prototype.reloadTile=function(t,e){var r=this.loaded,n=t.uid,i=this;if(r&&r[n]){var a=r[n];a.showCollisionBoxes=t.showCollisionBoxes;var o=function(t,r){var n=a.reloadCallback;n&&(delete a.reloadCallback,a.parse(a.vectorTile,i.layerIndex,i.actor,n)),e(t,r)};"parsing"===a.status?a.reloadCallback=o:"done"===a.status&&a.parse(a.vectorTile,this.layerIndex,this.actor,o)}},A.prototype.abortTile=function(t,e){var r=this.loading,n=t.uid;r&&r[n]&&r[n].abort&&(r[n].abort(),delete r[n]),e()},A.prototype.removeTile=function(t,e){var r=this.loaded,n=t.uid;r&&r[n]&&delete r[n],e()};var T=function(){this.loading={},this.loaded={}};T.prototype.loadTile=function(e,r){var n=e.uid,i=e.encoding,a=new t.default$31(n);this.loading[n]=a,a.loadFromImage(e.rawImageData,i),delete this.loading[n],this.loaded=this.loaded||{},this.loaded[n]=a,r(null,a)},T.prototype.removeTile=function(t){var e=this.loaded,r=t.uid;e&&e[r]&&delete e[r]};var M={RADIUS:6378137,FLATTENING:1/298.257223563,POLAR_RADIUS:6356752.3142};function S(t){var e=0;if(t&&t.length>0){e+=Math.abs(E(t[0]));for(var r=1;r2){for(o=0;o=0}(t)===e?t:t.reverse()}var D=t.default$29.VectorTileFeature.prototype.toGeoJSON,P=function(e){this._feature=e,this.extent=t.default$8,this.type=e.type,this.properties=e.tags,"id"in e&&!isNaN(e.id)&&(this.id=parseInt(e.id,10))};P.prototype.loadGeometry=function(){if(1===this._feature.type){for(var 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G(t.lng,t.lat):G.convert(t),this},Y.prototype.setSouthWest=function(t){return this._sw=t instanceof G?new G(t.lng,t.lat):G.convert(t),this},Y.prototype.extend=function(t){var e,r,n=this._sw,i=this._ne;if(t instanceof G)e=t,r=t;else{if(!(t instanceof Y))return Array.isArray(t)?t.every(Array.isArray)?this.extend(Y.convert(t)):this.extend(G.convert(t)):this;if(e=t._sw,r=t._ne,!e||!r)return this}return n||i?(n.lng=Math.min(e.lng,n.lng),n.lat=Math.min(e.lat,n.lat),i.lng=Math.max(r.lng,i.lng),i.lat=Math.max(r.lat,i.lat)):(this._sw=new G(e.lng,e.lat),this._ne=new G(r.lng,r.lat)),this},Y.prototype.getCenter=function(){return new G((this._sw.lng+this._ne.lng)/2,(this._sw.lat+this._ne.lat)/2)},Y.prototype.getSouthWest=function(){return this._sw},Y.prototype.getNorthEast=function(){return this._ne},Y.prototype.getNorthWest=function(){return new G(this.getWest(),this.getNorth())},Y.prototype.getSouthEast=function(){return new G(this.getEast(),this.getSouth())},Y.prototype.getWest=function(){return this._sw.lng},Y.prototype.getSouth=function(){return this._sw.lat},Y.prototype.getEast=function(){return this._ne.lng},Y.prototype.getNorth=function(){return this._ne.lat},Y.prototype.toArray=function(){return[this._sw.toArray(),this._ne.toArray()]},Y.prototype.toString=function(){return"LngLatBounds("+this._sw.toString()+", "+this._ne.toString()+")"},Y.prototype.isEmpty=function(){return!(this._sw&&this._ne)},Y.convert=function(t){return!t||t instanceof Y?t:new Y(t)};var W=function(t,e,r){this.bounds=Y.convert(this.validateBounds(t)),this.minzoom=e||0,this.maxzoom=r||24};W.prototype.validateBounds=function(t){return Array.isArray(t)&&4===t.length?[Math.max(-180,t[0]),Math.max(-90,t[1]),Math.min(180,t[2]),Math.min(90,t[3])]:[-180,-90,180,90]},W.prototype.contains=function(t){var e=Math.floor(this.lngX(this.bounds.getWest(),t.z)),r=Math.floor(this.latY(this.bounds.getNorth(),t.z)),n=Math.ceil(this.lngX(this.bounds.getEast(),t.z)),i=Math.ceil(this.latY(this.bounds.getSouth(),t.z));return t.x>=e&&t.x=r&&t.y0&&(l[new t.OverscaledTileID(e.overscaledZ,a,r.z,i,r.y-1).key]={backfilled:!1},l[new t.OverscaledTileID(e.overscaledZ,e.wrap,r.z,r.x,r.y-1).key]={backfilled:!1},l[new t.OverscaledTileID(e.overscaledZ,s,r.z,o,r.y-1).key]={backfilled:!1}),r.y+10&&(n.resourceTiming=e._resourceTiming,e._resourceTiming=[]),e.fire(new t.Event("data",n))}})},r.prototype.onAdd=function(t){this.map=t,this.load()},r.prototype.setData=function(e){var r=this;return this._data=e,this.fire(new t.Event("dataloading",{dataType:"source"})),this._updateWorkerData(function(e){if(e)return r.fire(new t.ErrorEvent(e));var n={dataType:"source",sourceDataType:"content"};r._collectResourceTiming&&r._resourceTiming&&r._resourceTiming.length>0&&(n.resourceTiming=r._resourceTiming,r._resourceTiming=[]),r.fire(new t.Event("data",n))}),this},r.prototype._updateWorkerData=function(e){var r,n,i=this,a=t.extend({},this.workerOptions),o=this._data;"string"==typeof o?(a.request=this.map._transformRequest((r=o,(n=t.default.document.createElement("a")).href=r,n.href),t.ResourceType.Source),a.request.collectResourceTiming=this._collectResourceTiming):a.data=JSON.stringify(o),this.workerID=this.dispatcher.send(this.type+"."+a.source+".loadData",a,function(t,r){i._removed||r&&r.abandoned||(i._loaded=!0,r&&r.resourceTiming&&r.resourceTiming[i.id]&&(i._resourceTiming=r.resourceTiming[i.id].slice(0)),i.dispatcher.send(i.type+"."+a.source+".coalesce",null,null,i.workerID),e(t))},this.workerID)},r.prototype.loadTile=function(t,e){var r=this,n=void 0===t.workerID?"loadTile":"reloadTile",i={type:this.type,uid:t.uid,tileID:t.tileID,zoom:t.tileID.overscaledZ,maxZoom:this.maxzoom,tileSize:this.tileSize,source:this.id,pixelRatio:a.devicePixelRatio,showCollisionBoxes:this.map.showCollisionBoxes};t.workerID=this.dispatcher.send(n,i,function(i,a){return t.unloadVectorData(),t.aborted?e(null):i?e(i):(t.loadVectorData(a,r.map.painter,"reloadTile"===n),e(null))},this.workerID)},r.prototype.abortTile=function(t){t.aborted=!0},r.prototype.unloadTile=function(t){t.unloadVectorData(),this.dispatcher.send("removeTile",{uid:t.uid,type:this.type,source:this.id},null,t.workerID)},r.prototype.onRemove=function(){this._removed=!0,this.dispatcher.send("removeSource",{type:this.type,source:this.id},null,this.workerID)},r.prototype.serialize=function(){return t.extend({},this._options,{type:this.type,data:this._data})},r.prototype.hasTransition=function(){return!1},r}(t.Evented),K=t.createLayout([{name:"a_pos",type:"Int16",components:2},{name:"a_texture_pos",type:"Int16",components:2}]),Q=function(){this.boundProgram=null,this.boundLayoutVertexBuffer=null,this.boundPaintVertexBuffers=[],this.boundIndexBuffer=null,this.boundVertexOffset=null,this.boundDynamicVertexBuffer=null,this.vao=null};Q.prototype.bind=function(t,e,r,n,i,a,o,s){this.context=t;for(var l=this.boundPaintVertexBuffers.length!==n.length,c=0;!l&&c>s.z,c=new t.default$1(s.x*l,s.y*l),u=new t.default$1(c.x+l,c.y+l),h=this.segments.prepareSegment(4,n,i);n.emplaceBack(c.x,c.y,c.x,c.y),n.emplaceBack(u.x,c.y,u.x,c.y),n.emplaceBack(c.x,u.y,c.x,u.y),n.emplaceBack(u.x,u.y,u.x,u.y);var f=h.vertexLength;i.emplaceBack(f,f+1,f+2),i.emplaceBack(f+1,f+2,f+3),h.vertexLength+=4,h.primitiveLength+=2}this.maskedBoundsBuffer=r.createVertexBuffer(n,K.members),this.maskedIndexBuffer=r.createIndexBuffer(i)}},st.prototype.hasData=function(){return"loaded"===this.state||"reloading"===this.state||"expired"===this.state},st.prototype.setExpiryData=function(e){var r=this.expirationTime;if(e.cacheControl){var n=t.parseCacheControl(e.cacheControl);n["max-age"]&&(this.expirationTime=Date.now()+1e3*n["max-age"])}else e.expires&&(this.expirationTime=new Date(e.expires).getTime());if(this.expirationTime){var i=Date.now(),a=!1;if(this.expirationTime>i)a=!1;else if(r)if(this.expirationTimethis.max){var o=this._getAndRemoveByKey(this.order[0]);o&&this.onRemove(o)}return this},lt.prototype.has=function(t){return t.wrapped().key in this.data},lt.prototype.getAndRemove=function(t){return this.has(t)?this._getAndRemoveByKey(t.wrapped().key):null},lt.prototype._getAndRemoveByKey=function(t){var e=this.data[t].shift();return e.timeout&&clearTimeout(e.timeout),0===this.data[t].length&&delete this.data[t],this.order.splice(this.order.indexOf(t),1),e.value},lt.prototype.get=function(t){return this.has(t)?this.data[t.wrapped().key][0].value:null},lt.prototype.remove=function(t,e){if(!this.has(t))return this;var r=t.wrapped().key,n=void 0===e?0:this.data[r].indexOf(e),i=this.data[r][n];return this.data[r].splice(n,1),i.timeout&&clearTimeout(i.timeout),0===this.data[r].length&&delete this.data[r],this.onRemove(i.value),this.order.splice(this.order.indexOf(r),1),this},lt.prototype.setMaxSize=function(t){for(this.max=t;this.order.length>this.max;){var e=this._getAndRemoveByKey(this.order[0]);e&&this.onRemove(e)}return this};var ct=function(t,e,r){this.context=t;var n=t.gl;this.buffer=n.createBuffer(),this.dynamicDraw=Boolean(r),this.unbindVAO(),t.bindElementBuffer.set(this.buffer),n.bufferData(n.ELEMENT_ARRAY_BUFFER,e.arrayBuffer,this.dynamicDraw?n.DYNAMIC_DRAW:n.STATIC_DRAW),this.dynamicDraw||delete e.arrayBuffer};ct.prototype.unbindVAO=function(){this.context.extVertexArrayObject&&this.context.bindVertexArrayOES.set(null)},ct.prototype.bind=function(){this.context.bindElementBuffer.set(this.buffer)},ct.prototype.updateData=function(t){var e=this.context.gl;this.unbindVAO(),this.bind(),e.bufferSubData(e.ELEMENT_ARRAY_BUFFER,0,t.arrayBuffer)},ct.prototype.destroy=function(){var t=this.context.gl;this.buffer&&(t.deleteBuffer(this.buffer),delete this.buffer)};var ut={Int8:"BYTE",Uint8:"UNSIGNED_BYTE",Int16:"SHORT",Uint16:"UNSIGNED_SHORT",Int32:"INT",Uint32:"UNSIGNED_INT",Float32:"FLOAT"},ht=function(t,e,r,n){this.length=e.length,this.attributes=r,this.itemSize=e.bytesPerElement,this.dynamicDraw=n,this.context=t;var i=t.gl;this.buffer=i.createBuffer(),t.bindVertexBuffer.set(this.buffer),i.bufferData(i.ARRAY_BUFFER,e.arrayBuffer,this.dynamicDraw?i.DYNAMIC_DRAW:i.STATIC_DRAW),this.dynamicDraw||delete e.arrayBuffer};ht.prototype.bind=function(){this.context.bindVertexBuffer.set(this.buffer)},ht.prototype.updateData=function(t){var e=this.context.gl;this.bind(),e.bufferSubData(e.ARRAY_BUFFER,0,t.arrayBuffer)},ht.prototype.enableAttributes=function(t,e){for(var r=0;r1||(Math.abs(r)>1&&(1===Math.abs(r+i)?r+=i:1===Math.abs(r-i)&&(r-=i)),e.dem&&t.dem&&(t.dem.backfillBorder(e.dem,r,n),t.neighboringTiles&&t.neighboringTiles[a]&&(t.neighboringTiles[a].backfilled=!0)))}},r.prototype.getTile=function(t){return this.getTileByID(t.key)},r.prototype.getTileByID=function(t){return this._tiles[t]},r.prototype.getZoom=function(t){return t.zoom+t.scaleZoom(t.tileSize/this._source.tileSize)},r.prototype._findLoadedChildren=function(t,e,r){var n=!1;for(var i in this._tiles){var a=this._tiles[i];if(!(r[i]||!a.hasData()||a.tileID.overscaledZ<=t.overscaledZ||a.tileID.overscaledZ>e)){var o=Math.pow(2,a.tileID.canonical.z-t.canonical.z);if(Math.floor(a.tileID.canonical.x/o)===t.canonical.x&&Math.floor(a.tileID.canonical.y/o)===t.canonical.y)for(r[i]=a.tileID,n=!0;a&&a.tileID.overscaledZ-1>t.overscaledZ;){var s=a.tileID.scaledTo(a.tileID.overscaledZ-1);if(!s)break;(a=this._tiles[s.key])&&a.hasData()&&(delete r[i],r[s.key]=s)}}}return n},r.prototype.findLoadedParent=function(t,e,r){for(var n=t.overscaledZ-1;n>=e;n--){var i=t.scaledTo(n);if(!i)return;var a=String(i.key),o=this._tiles[a];if(o&&o.hasData())return r[a]=i,o;if(this._cache.has(i))return r[a]=i,this._cache.get(i)}},r.prototype.updateCacheSize=function(t){var e=(Math.ceil(t.width/this._source.tileSize)+1)*(Math.ceil(t.height/this._source.tileSize)+1),r=Math.floor(5*e),n="number"==typeof this._maxTileCacheSize?Math.min(this._maxTileCacheSize,r):r;this._cache.setMaxSize(n)},r.prototype.handleWrapJump=function(t){var e=(t-(void 0===this._prevLng?t:this._prevLng))/360,r=Math.round(e);if(this._prevLng=t,r){var n={};for(var i in this._tiles){var a=this._tiles[i];a.tileID=a.tileID.unwrapTo(a.tileID.wrap+r),n[a.tileID.key]=a}for(var o in this._tiles=n,this._timers)clearTimeout(this._timers[o]),delete this._timers[o];for(var s in this._tiles){var l=this._tiles[s];this._setTileReloadTimer(s,l)}}},r.prototype.update=function(e){var n=this;if(this.transform=e,this._sourceLoaded&&!this._paused){var i;this.updateCacheSize(e),this.handleWrapJump(this.transform.center.lng),this._coveredTiles={},this.used?this._source.tileID?i=e.getVisibleUnwrappedCoordinates(this._source.tileID).map(function(e){return new t.OverscaledTileID(e.canonical.z,e.wrap,e.canonical.z,e.canonical.x,e.canonical.y)}):(i=e.coveringTiles({tileSize:this._source.tileSize,minzoom:this._source.minzoom,maxzoom:this._source.maxzoom,roundZoom:this._source.roundZoom,reparseOverscaled:this._source.reparseOverscaled}),this._source.hasTile&&(i=i.filter(function(t){return n._source.hasTile(t)}))):i=[];var o,s=(this._source.roundZoom?Math.round:Math.floor)(this.getZoom(e)),l=Math.max(s-r.maxOverzooming,this._source.minzoom),c=Math.max(s+r.maxUnderzooming,this._source.minzoom),u=this._updateRetainedTiles(i,s),h={};if(Zt(this._source.type))for(var f=Object.keys(u),p=0;p=a.now())){n._findLoadedChildren(g,c,u)&&(u[d]=g);var m=n.findLoadedParent(g,l,h);m&&n._addTile(m.tileID)}}for(o in h)u[o]||(n._coveredTiles[o]=!0);for(o in h)u[o]=h[o];for(var y=t.keysDifference(this._tiles,u),x=0;xthis._source.maxzoom){var f=l.children(this._source.maxzoom)[0],p=this.getTile(f);p&&p.hasData()?n[f.key]=f:h=!1}else{this._findLoadedChildren(l,o,n);for(var d=l.children(this._source.maxzoom),g=0;g=a;--v){var m=l.scaledTo(v);if(i[m.key])break;if(i[m.key]=!0,!(c=this.getTile(m))&&u&&(c=this._addTile(m)),c&&(n[m.key]=m,u=c.wasRequested(),c.hasData()))break}}}return n},r.prototype._addTile=function(e){var r=this._tiles[e.key];if(r)return r;(r=this._cache.getAndRemove(e))&&(this._setTileReloadTimer(e.key,r),r.tileID=e);var n=Boolean(r);return n||(r=new st(e,this._source.tileSize*e.overscaleFactor()),this._loadTile(r,this._tileLoaded.bind(this,r,e.key,r.state))),r?(r.uses++,this._tiles[e.key]=r,n||this._source.fire(new t.Event("dataloading",{tile:r,coord:r.tileID,dataType:"source"})),r):null},r.prototype._setTileReloadTimer=function(t,e){var r=this;t in this._timers&&(clearTimeout(this._timers[t]),delete this._timers[t]);var n=e.getExpiryTimeout();n&&(this._timers[t]=setTimeout(function(){r._reloadTile(t,"expired"),delete r._timers[t]},n))},r.prototype._removeTile=function(t){var e=this._tiles[t];e&&(e.uses--,delete this._tiles[t],this._timers[t]&&(clearTimeout(this._timers[t]),delete this._timers[t]),e.uses>0||(e.hasData()?this._cache.add(e.tileID,e,e.getExpiryTimeout()):(e.aborted=!0,this._abortTile(e),this._unloadTile(e))))},r.prototype.clearTiles=function(){for(var t in this._shouldReloadOnResume=!1,this._paused=!1,this._tiles)this._removeTile(t);this._cache.reset()},r.prototype.tilesIn=function(e,r){for(var n=[],i=this.getIds(),a=1/0,o=1/0,s=-1/0,l=-1/0,c=e[0].zoom,u=0;u=0&&m[1].y+v>=0){for(var y=[],x=0;x=a.now())return!0}return!1},r}(t.Evented);function Xt(e,r){var n=r.zoomTo(e.canonical.z);return new t.default$1((n.column-(e.canonical.x+e.wrap*Math.pow(2,e.canonical.z)))*t.default$8,(n.row-e.canonical.y)*t.default$8)}function Zt(t){return"raster"===t||"image"===t||"video"===t}function $t(){return new t.default.Worker(En.workerUrl)}Wt.maxOverzooming=10,Wt.maxUnderzooming=3;var Jt,Kt=function(){this.active={}};function Qt(e,r){var n={};for(var i in e)"ref"!==i&&(n[i]=e[i]);return t.default$18.forEach(function(t){t in r&&(n[t]=r[t])}),n}function te(t){t=t.slice();for(var e=Object.create(null),r=0;rthis.width||n<0||e>this.height)return!i&&[];var a=[];if(t<=0&&e<=0&&this.width<=r&&this.height<=n){if(i)return!0;for(var o=0;o0:a},ce.prototype._queryCircle=function(t,e,r,n){var i=t-r,a=t+r,o=e-r,s=e+r;if(a<0||i>this.width||s<0||o>this.height)return!n&&[];var l=[],c={hitTest:n,circle:{x:t,y:e,radius:r},seenUids:{box:{},circle:{}}};return this._forEachCell(i,o,a,s,this._queryCellCircle,l,c),n?l.length>0:l},ce.prototype.query=function(t,e,r,n){return this._query(t,e,r,n,!1)},ce.prototype.hitTest=function(t,e,r,n){return this._query(t,e,r,n,!0)},ce.prototype.hitTestCircle=function(t,e,r){return this._queryCircle(t,e,r,!0)},ce.prototype._queryCell=function(t,e,r,n,i,a,o){var s=o.seenUids,l=this.boxCells[i];if(null!==l)for(var c=this.bboxes,u=0,h=l;u=c[p+0]&&n>=c[p+1]){if(o.hitTest)return a.push(!0),!0;a.push({key:this.boxKeys[f],x1:c[p],y1:c[p+1],x2:c[p+2],y2:c[p+3]})}}}var d=this.circleCells[i];if(null!==d)for(var g=this.circles,v=0,m=d;vo*o+s*s},ce.prototype._circleAndRectCollide=function(t,e,r,n,i,a,o){var s=(a-n)/2,l=Math.abs(t-(n+s));if(l>s+r)return!1;var c=(o-i)/2,u=Math.abs(e-(i+c));if(u>c+r)return!1;if(l<=s||u<=c)return!0;var h=l-s,f=u-c;return h*h+f*f<=r*r};var ue=t.default$19.layout;function he(e,r,n,i,a){var o=t.mat4.identity(new Float32Array(16));return r?(t.mat4.identity(o),t.mat4.scale(o,o,[1/a,1/a,1]),n||t.mat4.rotateZ(o,o,i.angle)):(t.mat4.scale(o,o,[i.width/2,-i.height/2,1]),t.mat4.translate(o,o,[1,-1,0]),t.mat4.multiply(o,o,e)),o}function fe(e,r,n,i,a){var o=t.mat4.identity(new Float32Array(16));return r?(t.mat4.multiply(o,o,e),t.mat4.scale(o,o,[a,a,1]),n||t.mat4.rotateZ(o,o,-i.angle)):(t.mat4.scale(o,o,[1,-1,1]),t.mat4.translate(o,o,[-1,-1,0]),t.mat4.scale(o,o,[2/i.width,2/i.height,1])),o}function pe(e,r){var n=[e.x,e.y,0,1];ke(n,n,r);var i=n[3];return{point:new t.default$1(n[0]/i,n[1]/i),signedDistanceFromCamera:i}}function de(t,e){var r=t[0]/t[3],n=t[1]/t[3];return r>=-e[0]&&r<=e[0]&&n>=-e[1]&&n<=e[1]}function ge(e,r,n,i,a,o,s,l){var c=i?e.textSizeData:e.iconSizeData,u=t.evaluateSizeForZoom(c,n.transform.zoom,ue.properties[i?"text-size":"icon-size"]),h=[256/n.width*2+1,256/n.height*2+1],f=i?e.text.dynamicLayoutVertexArray:e.icon.dynamicLayoutVertexArray;f.clear();for(var p=e.lineVertexArray,d=i?e.text.placedSymbolArray:e.icon.placedSymbolArray,g=n.transform.width/n.transform.height,v=!1,m=0;mMath.abs(n.x-r.x)*i?{useVertical:!0}:(e===t.WritingMode.vertical?r.yn.x)?{needsFlipping:!0}:null}function ye(e,r,n,i,a,o,s,l,c,u,h,f,p,d){var g,v=r/24,m=e.lineOffsetX*r,y=e.lineOffsetY*r;if(e.numGlyphs>1){var x=e.glyphStartIndex+e.numGlyphs,b=e.lineStartIndex,_=e.lineStartIndex+e.lineLength,w=ve(v,l,m,y,n,h,f,e,c,o,p,!1);if(!w)return{notEnoughRoom:!0};var k=pe(w.first.point,s).point,A=pe(w.last.point,s).point;if(i&&!n){var T=me(e.writingMode,k,A,d);if(T)return T}g=[w.first];for(var M=e.glyphStartIndex+1;M0?L.point:xe(f,C,S,1,a),O=me(e.writingMode,S,z,d);if(O)return O}var I=be(v*l.getoffsetX(e.glyphStartIndex),m,y,n,h,f,e.segment,e.lineStartIndex,e.lineStartIndex+e.lineLength,c,o,p,!1);if(!I)return{notEnoughRoom:!0};g=[I]}for(var D=0,P=g;D0?1:-1,v=0;i&&(g*=-1,v=Math.PI),g<0&&(v+=Math.PI);for(var m=g>0?l+s:l+s+1,y=m,x=a,b=a,_=0,w=0,k=Math.abs(d);_+w<=k;){if((m+=g)=c)return null;if(b=x,void 0===(x=f[m])){var A=new t.default$1(u.getx(m),u.gety(m)),T=pe(A,h);if(T.signedDistanceFromCamera>0)x=f[m]=T.point;else{var M=m-g;x=xe(0===_?o:new t.default$1(u.getx(M),u.gety(M)),A,b,k-_+1,h)}}_+=w,w=b.dist(x)}var S=(k-_)/w,E=x.sub(b),C=E.mult(S)._add(b);return C._add(E._unit()._perp()._mult(n*g)),{point:C,angle:v+Math.atan2(x.y-b.y,x.x-b.x),tileDistance:p?{prevTileDistance:m-g===y?0:u.gettileUnitDistanceFromAnchor(m-g),lastSegmentViewportDistance:k-_}:null}}var _e=new Float32Array([-1/0,-1/0,0,-1/0,-1/0,0,-1/0,-1/0,0,-1/0,-1/0,0]);function we(t,e){for(var r=0;rM)Te(e,S,!1);else{var O=this.projectPoint(u,E,C),I=L*k;if(d.length>0){var D=O.x-d[d.length-4],P=O.y-d[d.length-3];if(I*I*2>D*D+P*P&&S+8-T&&R=this.screenRightBoundary||n<100||e>this.screenBottomBoundary};var Se=t.default$19.layout,Ee=function(t,e,r,n){this.opacity=t?Math.max(0,Math.min(1,t.opacity+(t.placed?e:-e))):n&&r?1:0,this.placed=r};Ee.prototype.isHidden=function(){return 0===this.opacity&&!this.placed};var Ce=function(t,e,r,n,i){this.text=new Ee(t?t.text:null,e,r,i),this.icon=new Ee(t?t.icon:null,e,n,i)};Ce.prototype.isHidden=function(){return this.text.isHidden()&&this.icon.isHidden()};var Le=function(t,e,r){this.text=t,this.icon=e,this.skipFade=r},ze=function(t,e){this.transform=t.clone(),this.collisionIndex=new Ae(this.transform),this.placements={},this.opacities={},this.stale=!1,this.fadeDuration=e,this.retainedQueryData={}};function Oe(t,e,r){t.emplaceBack(e?1:0,r?1:0),t.emplaceBack(e?1:0,r?1:0),t.emplaceBack(e?1:0,r?1:0),t.emplaceBack(e?1:0,r?1:0)}ze.prototype.placeLayerTile=function(e,r,n,i){var a=r.getBucket(e),o=r.latestFeatureIndex;if(a&&o&&e.id===a.layerIds[0]){var s=r.collisionBoxArray,l=a.layers[0].layout,c=Math.pow(2,this.transform.zoom-r.tileID.overscaledZ),u=r.tileSize/t.default$8,h=this.transform.calculatePosMatrix(r.tileID.toUnwrapped()),f=he(h,"map"===l.get("text-pitch-alignment"),"map"===l.get("text-rotation-alignment"),this.transform,Me(r,1,this.transform.zoom)),p=he(h,"map"===l.get("icon-pitch-alignment"),"map"===l.get("icon-rotation-alignment"),this.transform,Me(r,1,this.transform.zoom));this.retainedQueryData[a.bucketInstanceId]=new function(t,e,r,n,i){this.bucketInstanceId=t,this.featureIndex=e,this.sourceLayerIndex=r,this.bucketIndex=n,this.tileID=i}(a.bucketInstanceId,o,a.sourceLayerIndex,a.index,r.tileID),this.placeLayerBucket(a,h,f,p,c,u,n,i,s)}},ze.prototype.placeLayerBucket=function(e,r,n,i,a,o,s,l,c){for(var u=e.layers[0].layout,h=t.evaluateSizeForZoom(e.textSizeData,this.transform.zoom,Se.properties["text-size"]),f=!e.hasTextData()||u.get("text-optional"),p=!e.hasIconData()||u.get("icon-optional"),d=0,g=e.symbolInstances;d0,x=x&&b.offscreen);var T=v.collisionArrays.textCircles;if(T){var M=e.text.placedSymbolArray.get(v.placedTextSymbolIndices[0]),S=t.evaluateSizeForFeature(e.textSizeData,h,M);_=this.collisionIndex.placeCollisionCircles(T,u.get("text-allow-overlap"),a,o,v.key,M,e.lineVertexArray,e.glyphOffsetArray,S,r,n,s,"map"===u.get("text-pitch-alignment")),m=u.get("text-allow-overlap")||_.circles.length>0,x=x&&_.offscreen}v.collisionArrays.iconFeatureIndex&&(A=v.collisionArrays.iconFeatureIndex),v.collisionArrays.iconBox&&(y=(w=this.collisionIndex.placeCollisionBox(v.collisionArrays.iconBox,u.get("icon-allow-overlap"),o,r)).box.length>0,x=x&&w.offscreen),f||p?p?f||(y=y&&m):m=y&&m:y=m=y&&m,m&&b&&this.collisionIndex.insertCollisionBox(b.box,u.get("text-ignore-placement"),e.bucketInstanceId,k),y&&w&&this.collisionIndex.insertCollisionBox(w.box,u.get("icon-ignore-placement"),e.bucketInstanceId,A),m&&_&&this.collisionIndex.insertCollisionCircles(_.circles,u.get("text-ignore-placement"),e.bucketInstanceId,k),this.placements[v.crossTileID]=new Le(m,y,x||e.justReloaded),l[v.crossTileID]=!0}}e.justReloaded=!1},ze.prototype.commit=function(t,e){this.commitTime=e;var r=!1,n=t&&0!==this.fadeDuration?(this.commitTime-t.commitTime)/this.fadeDuration:1,i=t?t.opacities:{};for(var a in this.placements){var o=this.placements[a],s=i[a];s?(this.opacities[a]=new Ce(s,n,o.text,o.icon),r=r||o.text!==s.text.placed||o.icon!==s.icon.placed):(this.opacities[a]=new Ce(null,n,o.text,o.icon,o.skipFade),r=r||o.text||o.icon)}for(var l in i){var c=i[l];if(!this.opacities[l]){var u=new Ce(c,n,!1,!1);u.isHidden()||(this.opacities[l]=u,r=r||c.text.placed||c.icon.placed)}}r?this.lastPlacementChangeTime=e:"number"!=typeof this.lastPlacementChangeTime&&(this.lastPlacementChangeTime=t?t.lastPlacementChangeTime:e)},ze.prototype.updateLayerOpacities=function(t,e){for(var r={},n=0,i=e;n0||s.numVerticalGlyphVertices>0,h=s.numIconVertices>0;if(u){for(var f=je(c.text),p=(s.numGlyphVertices+s.numVerticalGlyphVertices)/4,d=0;dt},ze.prototype.setStale=function(){this.stale=!0};var Ie=Math.pow(2,25),De=Math.pow(2,24),Pe=Math.pow(2,17),Re=Math.pow(2,16),Fe=Math.pow(2,9),Be=Math.pow(2,8),Ne=Math.pow(2,1);function je(t){if(0===t.opacity&&!t.placed)return 0;if(1===t.opacity&&t.placed)return 4294967295;var e=t.placed?1:0,r=Math.floor(127*t.opacity);return r*Ie+e*De+r*Pe+e*Re+r*Fe+e*Be+r*Ne+e}var Ve=function(){this._currentTileIndex=0,this._seenCrossTileIDs={}};Ve.prototype.continuePlacement=function(t,e,r,n,i){for(;this._currentTileIndex2};this._currentPlacementIndex>=0;){var s=e[t[n._currentPlacementIndex]],l=n.placement.collisionIndex.transform.zoom;if("symbol"===s.type&&(!s.minzoom||s.minzoom<=l)&&(!s.maxzoom||s.maxzoom>l)){if(n._inProgressLayer||(n._inProgressLayer=new Ve),n._inProgressLayer.continuePlacement(r[s.source],n.placement,n._showCollisionBoxes,s,o))return;delete n._inProgressLayer}n._currentPlacementIndex--}this._done=!0},Ue.prototype.commit=function(t,e){return this.placement.commit(t,e),this.placement};var qe=512/t.default$8/2,He=function(t,e,r){this.tileID=t,this.indexedSymbolInstances={},this.bucketInstanceId=r;for(var n=0,i=e;nt.overscaledZ)for(var l in s){var c=s[l];c.tileID.isChildOf(t)&&c.findMatches(e.symbolInstances,t,a)}else{var u=s[t.scaledTo(Number(o)).key];u&&u.findMatches(e.symbolInstances,t,a)}}for(var h=0,f=e.symbolInstances;h1?"@2x":"";function c(){if(s)n(s);else if(i&&o){var e=a.getImageData(o),r={};for(var l in i){var c=i[l],u=c.width,h=c.height,f=c.x,p=c.y,d=c.sdf,g=c.pixelRatio,v=new t.RGBAImage({width:u,height:h});t.RGBAImage.copy(e,v,{x:f,y:p},{x:0,y:0},{width:u,height:h}),r[l]={data:v,pixelRatio:g,sdf:d}}n(null,r)}}t.getJSON(r(_(e,l,".json"),t.ResourceType.SpriteJSON),function(t,e){s||(s=t,i=e,c())}),t.getImage(r(_(e,l,".png"),t.ResourceType.SpriteImage),function(t,e){s||(s=t,o=e,c())})}(e.sprite,this.map._transformRequest,function(e,r){if(e)n.fire(new t.ErrorEvent(e));else if(r)for(var i in r)n.imageManager.addImage(i,r[i]);n.imageManager.setLoaded(!0),n.fire(new t.Event("data",{dataType:"style"}))}):this.imageManager.setLoaded(!0),this.glyphManager.setURL(e.glyphs);var o=te(this.stylesheet.layers);this._order=o.map(function(t){return t.id}),this._layers={};for(var s=0,l=o;s0)throw new Error("Unimplemented: "+i.map(function(t){return t.command}).join(", ")+".");return n.forEach(function(t){"setTransition"!==t.command&&r[t.command].apply(r,t.args)}),this.stylesheet=e,!0},r.prototype.addImage=function(e,r){if(this.getImage(e))return this.fire(new t.ErrorEvent(new Error("An image with this name already exists.")));this.imageManager.addImage(e,r),this.fire(new t.Event("data",{dataType:"style"}))},r.prototype.getImage=function(t){return this.imageManager.getImage(t)},r.prototype.removeImage=function(e){if(!this.getImage(e))return this.fire(new t.ErrorEvent(new Error("No image with this name exists.")));this.imageManager.removeImage(e),this.fire(new t.Event("data",{dataType:"style"}))},r.prototype.addSource=function(e,r,n){var i=this;if(this._checkLoaded(),void 0!==this.sourceCaches[e])throw new Error("There is already a source with this ID");if(!r.type)throw new Error("The type property must be defined, but the only the following properties were given: "+Object.keys(r).join(", ")+".");if(!(["vector","raster","geojson","video","image"].indexOf(r.type)>=0&&this._validate(t.validateStyle.source,"sources."+e,r,null,n))){this.map&&this.map._collectResourceTiming&&(r.collectResourceTiming=!0);var a=this.sourceCaches[e]=new Wt(e,r,this.dispatcher);a.style=this,a.setEventedParent(this,function(){return{isSourceLoaded:i.loaded(),source:a.serialize(),sourceId:e}}),a.onAdd(this.map),this._changed=!0}},r.prototype.removeSource=function(e){if(this._checkLoaded(),void 0===this.sourceCaches[e])throw new Error("There is no source with this ID");for(var r in this._layers)if(this._layers[r].source===e)return this.fire(new t.ErrorEvent(new Error('Source "'+e+'" cannot be removed while layer "'+r+'" is using it.')));var n=this.sourceCaches[e];delete this.sourceCaches[e],delete this._updatedSources[e],n.fire(new t.Event("data",{sourceDataType:"metadata",dataType:"source",sourceId:e})),n.setEventedParent(null),n.clearTiles(),n.onRemove&&n.onRemove(this.map),this._changed=!0},r.prototype.setGeoJSONSourceData=function(t,e){this._checkLoaded(),this.sourceCaches[t].getSource().setData(e),this._changed=!0},r.prototype.getSource=function(t){return this.sourceCaches[t]&&this.sourceCaches[t].getSource()},r.prototype.addLayer=function(e,r,n){this._checkLoaded();var i=e.id;if(this.getLayer(i))this.fire(new t.ErrorEvent(new Error('Layer with id "'+i+'" already exists on this map')));else if("object"==typeof e.source&&(this.addSource(i,e.source),e=t.clone(e),e=t.extend(e,{source:i})),!this._validate(t.validateStyle.layer,"layers."+i,e,{arrayIndex:-1},n)){var a=t.default$22(e);this._validateLayer(a),a.setEventedParent(this,{layer:{id:i}});var o=r?this._order.indexOf(r):this._order.length;if(r&&-1===o)this.fire(new t.ErrorEvent(new Error('Layer with id "'+r+'" does not exist on this map.')));else{if(this._order.splice(o,0,i),this._layerOrderChanged=!0,this._layers[i]=a,this._removedLayers[i]&&a.source){var s=this._removedLayers[i];delete this._removedLayers[i],s.type!==a.type?this._updatedSources[a.source]="clear":(this._updatedSources[a.source]="reload",this.sourceCaches[a.source].pause())}this._updateLayer(a)}}},r.prototype.moveLayer=function(e,r){if(this._checkLoaded(),this._changed=!0,this._layers[e]){if(e!==r){var n=this._order.indexOf(e);this._order.splice(n,1);var i=r?this._order.indexOf(r):this._order.length;r&&-1===i?this.fire(new t.ErrorEvent(new Error('Layer with id "'+r+'" does not exist on this map.'))):(this._order.splice(i,0,e),this._layerOrderChanged=!0)}}else this.fire(new t.ErrorEvent(new Error("The layer '"+e+"' does not exist in the map's style and cannot be moved.")))},r.prototype.removeLayer=function(e){this._checkLoaded();var r=this._layers[e];if(r){r.setEventedParent(null);var n=this._order.indexOf(e);this._order.splice(n,1),this._layerOrderChanged=!0,this._changed=!0,this._removedLayers[e]=r,delete this._layers[e],delete this._updatedLayers[e],delete this._updatedPaintProps[e]}else this.fire(new t.ErrorEvent(new Error("The layer '"+e+"' does not exist in the map's style and cannot be removed.")))},r.prototype.getLayer=function(t){return this._layers[t]},r.prototype.setLayerZoomRange=function(e,r,n){this._checkLoaded();var i=this.getLayer(e);i?i.minzoom===r&&i.maxzoom===n||(null!=r&&(i.minzoom=r),null!=n&&(i.maxzoom=n),this._updateLayer(i)):this.fire(new t.ErrorEvent(new Error("The layer '"+e+"' does not exist in the map's style and cannot have zoom extent.")))},r.prototype.setFilter=function(e,r){this._checkLoaded();var n=this.getLayer(e);if(n){if(!t.default$10(n.filter,r))return null==r?(n.filter=void 0,void this._updateLayer(n)):void(this._validate(t.validateStyle.filter,"layers."+n.id+".filter",r)||(n.filter=t.clone(r),this._updateLayer(n)))}else this.fire(new t.ErrorEvent(new Error("The layer '"+e+"' does not exist in the map's style and cannot be filtered.")))},r.prototype.getFilter=function(e){return t.clone(this.getLayer(e).filter)},r.prototype.setLayoutProperty=function(e,r,n){this._checkLoaded();var i=this.getLayer(e);i?t.default$10(i.getLayoutProperty(r),n)||(i.setLayoutProperty(r,n),this._updateLayer(i)):this.fire(new t.ErrorEvent(new Error("The layer '"+e+"' does not exist in the map's style and cannot be styled.")))},r.prototype.getLayoutProperty=function(t,e){return this.getLayer(t).getLayoutProperty(e)},r.prototype.setPaintProperty=function(e,r,n){this._checkLoaded();var i=this.getLayer(e);if(i){if(!t.default$10(i.getPaintProperty(r),n)){var a=i._transitionablePaint._values[r].value.isDataDriven();i.setPaintProperty(r,n),(i._transitionablePaint._values[r].value.isDataDriven()||a)&&this._updateLayer(i),this._changed=!0,this._updatedPaintProps[e]=!0}}else this.fire(new t.ErrorEvent(new Error("The layer '"+e+"' does not exist in the map's style and cannot be styled.")))},r.prototype.getPaintProperty=function(t,e){return this.getLayer(t).getPaintProperty(e)},r.prototype.getTransition=function(){return t.extend({duration:300,delay:0},this.stylesheet&&this.stylesheet.transition)},r.prototype.serialize=function(){var e=this;return t.filterObject({version:this.stylesheet.version,name:this.stylesheet.name,metadata:this.stylesheet.metadata,light:this.stylesheet.light,center:this.stylesheet.center,zoom:this.stylesheet.zoom,bearing:this.stylesheet.bearing,pitch:this.stylesheet.pitch,sprite:this.stylesheet.sprite,glyphs:this.stylesheet.glyphs,transition:this.stylesheet.transition,sources:t.mapObject(this.sourceCaches,function(t){return t.serialize()}),layers:this._order.map(function(t){return e._layers[t].serialize()})},function(t){return void 0!==t})},r.prototype._updateLayer=function(t){this._updatedLayers[t.id]=!0,t.source&&!this._updatedSources[t.source]&&(this._updatedSources[t.source]="reload",this.sourceCaches[t.source].pause()),this._changed=!0},r.prototype._flattenRenderedFeatures=function(t){for(var e=[],r=this._order.length-1;r>=0;r--)for(var n=this._order[r],i=0,a=t;i 0.5) {\n gl_FragColor = vec4(0.0, 0.0, 1.0, 0.5) * alpha;\n }\n\n if (v_notUsed > 0.5) {\n // This box not used, fade it out\n gl_FragColor *= .1;\n }\n}",vertexSource:"attribute vec2 a_pos;\nattribute vec2 a_anchor_pos;\nattribute vec2 a_extrude;\nattribute vec2 a_placed;\n\nuniform mat4 u_matrix;\nuniform vec2 u_extrude_scale;\nuniform float u_camera_to_center_distance;\n\nvarying float v_placed;\nvarying float v_notUsed;\n\nvoid main() {\n vec4 projectedPoint = u_matrix * vec4(a_anchor_pos, 0, 1);\n highp float camera_to_anchor_distance = projectedPoint.w;\n highp float collision_perspective_ratio = clamp(\n 0.5 + 0.5 * (u_camera_to_center_distance / camera_to_anchor_distance),\n 0.0, // Prevents oversized near-field boxes in pitched/overzoomed tiles\n 4.0);\n\n gl_Position = u_matrix * vec4(a_pos, 0.0, 1.0);\n gl_Position.xy += a_extrude * u_extrude_scale * gl_Position.w * collision_perspective_ratio;\n\n v_placed = a_placed.x;\n v_notUsed = a_placed.y;\n}\n"},collisionCircle:{fragmentSource:"uniform float u_overscale_factor;\n\nvarying float v_placed;\nvarying float v_notUsed;\nvarying float v_radius;\nvarying vec2 v_extrude;\nvarying vec2 v_extrude_scale;\n\nvoid main() {\n float alpha = 0.5;\n\n // Red = collision, hide label\n vec4 color = vec4(1.0, 0.0, 0.0, 1.0) * alpha;\n\n // Blue = no collision, label is showing\n if (v_placed > 0.5) {\n color = vec4(0.0, 0.0, 1.0, 0.5) * alpha;\n }\n\n if (v_notUsed > 0.5) {\n // This box not used, fade it out\n color *= .2;\n }\n\n float extrude_scale_length = length(v_extrude_scale);\n float extrude_length = length(v_extrude) * extrude_scale_length;\n float stroke_width = 15.0 * extrude_scale_length / u_overscale_factor;\n float radius = v_radius * extrude_scale_length;\n\n float distance_to_edge = abs(extrude_length - radius);\n float opacity_t = smoothstep(-stroke_width, 0.0, -distance_to_edge);\n\n gl_FragColor = opacity_t * color;\n}\n",vertexSource:"attribute vec2 a_pos;\nattribute vec2 a_anchor_pos;\nattribute vec2 a_extrude;\nattribute vec2 a_placed;\n\nuniform mat4 u_matrix;\nuniform vec2 u_extrude_scale;\nuniform float u_camera_to_center_distance;\n\nvarying float v_placed;\nvarying float v_notUsed;\nvarying float v_radius;\n\nvarying vec2 v_extrude;\nvarying vec2 v_extrude_scale;\n\nvoid main() {\n vec4 projectedPoint = u_matrix * vec4(a_anchor_pos, 0, 1);\n highp float camera_to_anchor_distance = projectedPoint.w;\n highp float collision_perspective_ratio = clamp(\n 0.5 + 0.5 * (u_camera_to_center_distance / camera_to_anchor_distance),\n 0.0, // Prevents oversized near-field circles in pitched/overzoomed tiles\n 4.0);\n\n gl_Position = u_matrix * vec4(a_pos, 0.0, 1.0);\n\n highp float padding_factor = 1.2; // Pad the vertices slightly to make room for anti-alias blur\n gl_Position.xy += a_extrude * u_extrude_scale * padding_factor * gl_Position.w * collision_perspective_ratio;\n\n v_placed = a_placed.x;\n v_notUsed = a_placed.y;\n v_radius = abs(a_extrude.y); // We don't pitch the circles, so both units of the extrusion vector are equal in magnitude to the radius\n\n v_extrude = a_extrude * padding_factor;\n v_extrude_scale = u_extrude_scale * u_camera_to_center_distance * collision_perspective_ratio;\n}\n"},debug:{fragmentSource:"uniform highp vec4 u_color;\n\nvoid main() {\n gl_FragColor = u_color;\n}\n",vertexSource:"attribute vec2 a_pos;\n\nuniform mat4 u_matrix;\n\nvoid main() {\n gl_Position = u_matrix * vec4(a_pos, 0, 1);\n}\n"},fill:{fragmentSource:"#pragma mapbox: define highp vec4 color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n #pragma mapbox: initialize highp vec4 color\n #pragma mapbox: initialize lowp float opacity\n\n gl_FragColor = color * opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"attribute vec2 a_pos;\n\nuniform mat4 u_matrix;\n\n#pragma mapbox: define highp vec4 color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n #pragma mapbox: initialize highp vec4 color\n #pragma mapbox: initialize lowp float opacity\n\n gl_Position = u_matrix * vec4(a_pos, 0, 1);\n}\n"},fillOutline:{fragmentSource:"#pragma mapbox: define highp vec4 outline_color\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_pos;\n\nvoid main() {\n #pragma mapbox: initialize highp vec4 outline_color\n #pragma mapbox: initialize lowp float opacity\n\n float dist = length(v_pos - gl_FragCoord.xy);\n float alpha = 1.0 - smoothstep(0.0, 1.0, dist);\n gl_FragColor = outline_color * (alpha * opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"attribute vec2 a_pos;\n\nuniform mat4 u_matrix;\nuniform vec2 u_world;\n\nvarying vec2 v_pos;\n\n#pragma mapbox: define highp vec4 outline_color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n #pragma mapbox: initialize highp vec4 outline_color\n #pragma mapbox: initialize lowp float opacity\n\n gl_Position = u_matrix * vec4(a_pos, 0, 1);\n v_pos = (gl_Position.xy / gl_Position.w + 1.0) / 2.0 * u_world;\n}\n"},fillOutlinePattern:{fragmentSource:"uniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform vec2 u_texsize;\nuniform float u_mix;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\nvarying vec2 v_pos;\n\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n #pragma mapbox: initialize lowp float opacity\n\n vec2 imagecoord = mod(v_pos_a, 1.0);\n vec2 pos = mix(u_pattern_tl_a / u_texsize, u_pattern_br_a / u_texsize, imagecoord);\n vec4 color1 = texture2D(u_image, pos);\n\n vec2 imagecoord_b = mod(v_pos_b, 1.0);\n vec2 pos2 = mix(u_pattern_tl_b / u_texsize, u_pattern_br_b / u_texsize, imagecoord_b);\n vec4 color2 = texture2D(u_image, pos2);\n\n // find distance to outline for alpha interpolation\n\n float dist = length(v_pos - gl_FragCoord.xy);\n float alpha = 1.0 - smoothstep(0.0, 1.0, dist);\n\n\n gl_FragColor = mix(color1, color2, u_mix) * alpha * opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"uniform mat4 u_matrix;\nuniform vec2 u_world;\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pixel_coord_upper;\nuniform vec2 u_pixel_coord_lower;\nuniform float u_scale_a;\nuniform float u_scale_b;\nuniform float u_tile_units_to_pixels;\n\nattribute vec2 a_pos;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\nvarying vec2 v_pos;\n\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n #pragma mapbox: initialize lowp float opacity\n\n gl_Position = u_matrix * vec4(a_pos, 0, 1);\n\n v_pos_a = get_pattern_pos(u_pixel_coord_upper, u_pixel_coord_lower, u_scale_a * u_pattern_size_a, u_tile_units_to_pixels, a_pos);\n v_pos_b = get_pattern_pos(u_pixel_coord_upper, u_pixel_coord_lower, u_scale_b * u_pattern_size_b, u_tile_units_to_pixels, a_pos);\n\n v_pos = (gl_Position.xy / gl_Position.w + 1.0) / 2.0 * u_world;\n}\n"},fillPattern:{fragmentSource:"uniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform vec2 u_texsize;\nuniform float u_mix;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\n\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n #pragma mapbox: initialize lowp float opacity\n\n vec2 imagecoord = mod(v_pos_a, 1.0);\n vec2 pos = mix(u_pattern_tl_a / u_texsize, u_pattern_br_a / u_texsize, imagecoord);\n vec4 color1 = texture2D(u_image, pos);\n\n vec2 imagecoord_b = mod(v_pos_b, 1.0);\n vec2 pos2 = mix(u_pattern_tl_b / u_texsize, u_pattern_br_b / u_texsize, imagecoord_b);\n vec4 color2 = texture2D(u_image, pos2);\n\n gl_FragColor = mix(color1, color2, u_mix) * opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"uniform mat4 u_matrix;\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pixel_coord_upper;\nuniform vec2 u_pixel_coord_lower;\nuniform float u_scale_a;\nuniform float u_scale_b;\nuniform float u_tile_units_to_pixels;\n\nattribute vec2 a_pos;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\n\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n #pragma mapbox: initialize lowp float opacity\n\n gl_Position = u_matrix * vec4(a_pos, 0, 1);\n\n v_pos_a = get_pattern_pos(u_pixel_coord_upper, u_pixel_coord_lower, u_scale_a * u_pattern_size_a, u_tile_units_to_pixels, a_pos);\n v_pos_b = get_pattern_pos(u_pixel_coord_upper, u_pixel_coord_lower, u_scale_b * u_pattern_size_b, u_tile_units_to_pixels, a_pos);\n}\n"},fillExtrusion:{fragmentSource:"varying vec4 v_color;\n#pragma mapbox: define lowp float base\n#pragma mapbox: define lowp float height\n#pragma mapbox: define highp vec4 color\n\nvoid main() {\n #pragma mapbox: initialize lowp float base\n #pragma mapbox: initialize lowp float height\n #pragma mapbox: initialize highp vec4 color\n\n gl_FragColor = v_color;\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"uniform mat4 u_matrix;\nuniform vec3 u_lightcolor;\nuniform lowp vec3 u_lightpos;\nuniform lowp float u_lightintensity;\n\nattribute vec2 a_pos;\nattribute vec4 a_normal_ed;\n\nvarying vec4 v_color;\n\n#pragma mapbox: define lowp float base\n#pragma mapbox: define lowp float height\n\n#pragma mapbox: define highp vec4 color\n\nvoid main() {\n #pragma mapbox: initialize lowp float base\n #pragma mapbox: initialize lowp float height\n #pragma mapbox: initialize highp vec4 color\n\n vec3 normal = a_normal_ed.xyz;\n\n base = max(0.0, base);\n height = max(0.0, height);\n\n float t = mod(normal.x, 2.0);\n\n gl_Position = u_matrix * vec4(a_pos, t > 0.0 ? height : base, 1);\n\n // Relative luminance (how dark/bright is the surface color?)\n float colorvalue = color.r * 0.2126 + color.g * 0.7152 + color.b * 0.0722;\n\n v_color = vec4(0.0, 0.0, 0.0, 1.0);\n\n // Add slight ambient lighting so no extrusions are totally black\n vec4 ambientlight = vec4(0.03, 0.03, 0.03, 1.0);\n color += ambientlight;\n\n // Calculate cos(theta), where theta is the angle between surface normal and diffuse light ray\n float directional = clamp(dot(normal / 16384.0, u_lightpos), 0.0, 1.0);\n\n // Adjust directional so that\n // the range of values for highlight/shading is narrower\n // with lower light intensity\n // and with lighter/brighter surface colors\n directional = mix((1.0 - u_lightintensity), max((1.0 - colorvalue + u_lightintensity), 1.0), directional);\n\n // Add gradient along z axis of side surfaces\n if (normal.y != 0.0) {\n directional *= clamp((t + base) * pow(height / 150.0, 0.5), mix(0.7, 0.98, 1.0 - u_lightintensity), 1.0);\n }\n\n // Assign final color based on surface + ambient light color, diffuse light directional, and light color\n // with lower bounds adjusted to hue of light\n // so that shading is tinted with the complementary (opposite) color to the light color\n v_color.r += clamp(color.r * directional * u_lightcolor.r, mix(0.0, 0.3, 1.0 - u_lightcolor.r), 1.0);\n v_color.g += clamp(color.g * directional * u_lightcolor.g, mix(0.0, 0.3, 1.0 - u_lightcolor.g), 1.0);\n v_color.b += clamp(color.b * directional * u_lightcolor.b, mix(0.0, 0.3, 1.0 - u_lightcolor.b), 1.0);\n}\n"},fillExtrusionPattern:{fragmentSource:"uniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform vec2 u_texsize;\nuniform float u_mix;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\nvarying vec4 v_lighting;\n\n#pragma mapbox: define lowp float base\n#pragma mapbox: define lowp float height\n\nvoid main() {\n #pragma mapbox: initialize lowp float base\n #pragma mapbox: initialize lowp float height\n\n vec2 imagecoord = mod(v_pos_a, 1.0);\n vec2 pos = mix(u_pattern_tl_a / u_texsize, u_pattern_br_a / u_texsize, imagecoord);\n vec4 color1 = texture2D(u_image, pos);\n\n vec2 imagecoord_b = mod(v_pos_b, 1.0);\n vec2 pos2 = mix(u_pattern_tl_b / u_texsize, u_pattern_br_b / u_texsize, imagecoord_b);\n vec4 color2 = texture2D(u_image, pos2);\n\n vec4 mixedColor = mix(color1, color2, u_mix);\n\n gl_FragColor = mixedColor * v_lighting;\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"uniform mat4 u_matrix;\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pixel_coord_upper;\nuniform vec2 u_pixel_coord_lower;\nuniform float u_scale_a;\nuniform float u_scale_b;\nuniform float u_tile_units_to_pixels;\nuniform float u_height_factor;\n\nuniform vec3 u_lightcolor;\nuniform lowp vec3 u_lightpos;\nuniform lowp float u_lightintensity;\n\nattribute vec2 a_pos;\nattribute vec4 a_normal_ed;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\nvarying vec4 v_lighting;\nvarying float v_directional;\n\n#pragma mapbox: define lowp float base\n#pragma mapbox: define lowp float height\n\nvoid main() {\n #pragma mapbox: initialize lowp float base\n #pragma mapbox: initialize lowp float height\n\n vec3 normal = a_normal_ed.xyz;\n float edgedistance = a_normal_ed.w;\n\n base = max(0.0, base);\n height = max(0.0, height);\n\n float t = mod(normal.x, 2.0);\n float z = t > 0.0 ? height : base;\n\n gl_Position = u_matrix * vec4(a_pos, z, 1);\n\n vec2 pos = normal.x == 1.0 && normal.y == 0.0 && normal.z == 16384.0\n ? a_pos // extrusion top\n : vec2(edgedistance, z * u_height_factor); // extrusion side\n\n v_pos_a = get_pattern_pos(u_pixel_coord_upper, u_pixel_coord_lower, u_scale_a * u_pattern_size_a, u_tile_units_to_pixels, pos);\n v_pos_b = get_pattern_pos(u_pixel_coord_upper, u_pixel_coord_lower, u_scale_b * u_pattern_size_b, u_tile_units_to_pixels, pos);\n\n v_lighting = vec4(0.0, 0.0, 0.0, 1.0);\n float directional = clamp(dot(normal / 16383.0, u_lightpos), 0.0, 1.0);\n directional = mix((1.0 - u_lightintensity), max((0.5 + u_lightintensity), 1.0), directional);\n\n if (normal.y != 0.0) {\n directional *= clamp((t + base) * pow(height / 150.0, 0.5), mix(0.7, 0.98, 1.0 - u_lightintensity), 1.0);\n }\n\n v_lighting.rgb += clamp(directional * u_lightcolor, mix(vec3(0.0), vec3(0.3), 1.0 - u_lightcolor), vec3(1.0));\n}\n"},extrusionTexture:{fragmentSource:"uniform sampler2D u_image;\nuniform float u_opacity;\nvarying vec2 v_pos;\n\nvoid main() {\n gl_FragColor = texture2D(u_image, v_pos) * u_opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(0.0);\n#endif\n}\n",vertexSource:"uniform mat4 u_matrix;\nuniform vec2 u_world;\nattribute vec2 a_pos;\nvarying vec2 v_pos;\n\nvoid main() {\n gl_Position = u_matrix * vec4(a_pos * u_world, 0, 1);\n\n v_pos.x = a_pos.x;\n v_pos.y = 1.0 - a_pos.y;\n}\n"},hillshadePrepare:{fragmentSource:"#ifdef GL_ES\nprecision highp float;\n#endif\n\nuniform sampler2D u_image;\nvarying vec2 v_pos;\nuniform vec2 u_dimension;\nuniform float u_zoom;\nuniform float u_maxzoom;\n\nfloat getElevation(vec2 coord, float bias) {\n // Convert encoded elevation value to meters\n vec4 data = texture2D(u_image, coord) * 255.0;\n return (data.r + data.g * 256.0 + data.b * 256.0 * 256.0) / 4.0;\n}\n\nvoid main() {\n vec2 epsilon = 1.0 / u_dimension;\n\n // queried pixels:\n // +-----------+\n // | | | |\n // | a | b | c |\n // | | | |\n // +-----------+\n // | | | |\n // | d | e | f |\n // | | | |\n // +-----------+\n // | | | |\n // | g | h | i |\n // | | | |\n // +-----------+\n\n float a = getElevation(v_pos + vec2(-epsilon.x, -epsilon.y), 0.0);\n float b = getElevation(v_pos + vec2(0, -epsilon.y), 0.0);\n float c = getElevation(v_pos + vec2(epsilon.x, -epsilon.y), 0.0);\n float d = getElevation(v_pos + vec2(-epsilon.x, 0), 0.0);\n float e = getElevation(v_pos, 0.0);\n float f = getElevation(v_pos + vec2(epsilon.x, 0), 0.0);\n float g = getElevation(v_pos + vec2(-epsilon.x, epsilon.y), 0.0);\n float h = getElevation(v_pos + vec2(0, epsilon.y), 0.0);\n float i = getElevation(v_pos + vec2(epsilon.x, epsilon.y), 0.0);\n\n // here we divide the x and y slopes by 8 * pixel size\n // where pixel size (aka meters/pixel) is:\n // circumference of the world / (pixels per tile * number of tiles)\n // which is equivalent to: 8 * 40075016.6855785 / (512 * pow(2, u_zoom))\n // which can be reduced to: pow(2, 19.25619978527 - u_zoom)\n // we want to vertically exaggerate the hillshading though, because otherwise\n // it is barely noticeable at low zooms. to do this, we multiply this by some\n // scale factor pow(2, (u_zoom - u_maxzoom) * a) where a is an arbitrary value\n // Here we use a=0.3 which works out to the expression below. see \n // nickidlugash's awesome breakdown for more info\n // https://github.com/mapbox/mapbox-gl-js/pull/5286#discussion_r148419556\n float exaggeration = u_zoom < 2.0 ? 0.4 : u_zoom < 4.5 ? 0.35 : 0.3;\n\n vec2 deriv = vec2(\n (c + f + f + i) - (a + d + d + g),\n (g + h + h + i) - (a + b + b + c)\n ) / pow(2.0, (u_zoom - u_maxzoom) * exaggeration + 19.2562 - u_zoom);\n\n gl_FragColor = clamp(vec4(\n deriv.x / 2.0 + 0.5,\n deriv.y / 2.0 + 0.5,\n 1.0,\n 1.0), 0.0, 1.0);\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"uniform mat4 u_matrix;\n\nattribute vec2 a_pos;\nattribute vec2 a_texture_pos;\n\nvarying vec2 v_pos;\n\nvoid main() {\n gl_Position = u_matrix * vec4(a_pos, 0, 1);\n v_pos = (a_texture_pos / 8192.0) / 2.0 + 0.25;\n}\n"},hillshade:{fragmentSource:"uniform sampler2D u_image;\nvarying vec2 v_pos;\n\nuniform vec2 u_latrange;\nuniform vec2 u_light;\nuniform vec4 u_shadow;\nuniform vec4 u_highlight;\nuniform vec4 u_accent;\n\n#define PI 3.141592653589793\n\nvoid main() {\n vec4 pixel = texture2D(u_image, v_pos);\n\n vec2 deriv = ((pixel.rg * 2.0) - 1.0);\n\n // We divide the slope by a scale factor based on the cosin of the pixel's approximate latitude\n // to account for mercator projection distortion. see #4807 for details\n float scaleFactor = cos(radians((u_latrange[0] - u_latrange[1]) * (1.0 - v_pos.y) + u_latrange[1]));\n // We also multiply the slope by an arbitrary z-factor of 1.25\n float slope = atan(1.25 * length(deriv) / scaleFactor);\n float aspect = deriv.x != 0.0 ? atan(deriv.y, -deriv.x) : PI / 2.0 * (deriv.y > 0.0 ? 1.0 : -1.0);\n\n float intensity = u_light.x;\n // We add PI to make this property match the global light object, which adds PI/2 to the light's azimuthal\n // position property to account for 0deg corresponding to north/the top of the viewport in the style spec\n // and the original shader was written to accept (-illuminationDirection - 90) as the azimuthal.\n float azimuth = u_light.y + PI;\n\n // We scale the slope exponentially based on intensity, using a calculation similar to\n // the exponential interpolation function in the style spec:\n // https://github.com/mapbox/mapbox-gl-js/blob/master/src/style-spec/expression/definitions/interpolate.js#L217-L228\n // so that higher intensity values create more opaque hillshading.\n float base = 1.875 - intensity * 1.75;\n float maxValue = 0.5 * PI;\n float scaledSlope = intensity != 0.5 ? ((pow(base, slope) - 1.0) / (pow(base, maxValue) - 1.0)) * maxValue : slope;\n\n // The accent color is calculated with the cosine of the slope while the shade color is calculated with the sine\n // so that the accent color's rate of change eases in while the shade color's eases out.\n float accent = cos(scaledSlope);\n // We multiply both the accent and shade color by a clamped intensity value\n // so that intensities >= 0.5 do not additionally affect the color values\n // while intensity values < 0.5 make the overall color more transparent.\n vec4 accent_color = (1.0 - accent) * u_accent * clamp(intensity * 2.0, 0.0, 1.0);\n float shade = abs(mod((aspect + azimuth) / PI + 0.5, 2.0) - 1.0);\n vec4 shade_color = mix(u_shadow, u_highlight, shade) * sin(scaledSlope) * clamp(intensity * 2.0, 0.0, 1.0);\n gl_FragColor = accent_color * (1.0 - shade_color.a) + shade_color;\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"uniform mat4 u_matrix;\n\nattribute vec2 a_pos;\nattribute vec2 a_texture_pos;\n\nvarying vec2 v_pos;\n\nvoid main() {\n gl_Position = u_matrix * vec4(a_pos, 0, 1);\n v_pos = a_texture_pos / 8192.0;\n}\n"},line:{fragmentSource:"#pragma mapbox: define highp vec4 color\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_width2;\nvarying vec2 v_normal;\nvarying float v_gamma_scale;\n\nvoid main() {\n #pragma mapbox: initialize highp vec4 color\n #pragma mapbox: initialize lowp float blur\n #pragma mapbox: initialize lowp float opacity\n\n // Calculate the distance of the pixel from the line in pixels.\n float dist = length(v_normal) * v_width2.s;\n\n // Calculate the antialiasing fade factor. This is either when fading in\n // the line in case of an offset line (v_width2.t) or when fading out\n // (v_width2.s)\n float blur2 = (blur + 1.0 / DEVICE_PIXEL_RATIO) * v_gamma_scale;\n float alpha = clamp(min(dist - (v_width2.t - blur2), v_width2.s - dist) / blur2, 0.0, 1.0);\n\n gl_FragColor = color * (alpha * opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"\n\n// the distance over which the line edge fades out.\n// Retina devices need a smaller distance to avoid aliasing.\n#define ANTIALIASING 1.0 / DEVICE_PIXEL_RATIO / 2.0\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\nattribute vec4 a_pos_normal;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform vec2 u_gl_units_to_pixels;\n\nvarying vec2 v_normal;\nvarying vec2 v_width2;\nvarying float v_gamma_scale;\nvarying highp float v_linesofar;\n\n#pragma mapbox: define highp vec4 color\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n#pragma mapbox: define mediump float gapwidth\n#pragma mapbox: define lowp float offset\n#pragma mapbox: define mediump float width\n\nvoid main() {\n #pragma mapbox: initialize highp vec4 color\n #pragma mapbox: initialize lowp float blur\n #pragma mapbox: initialize lowp float opacity\n #pragma mapbox: initialize mediump float gapwidth\n #pragma mapbox: initialize lowp float offset\n #pragma mapbox: initialize mediump float width\n\n vec2 a_extrude = a_data.xy - 128.0;\n float a_direction = mod(a_data.z, 4.0) - 1.0;\n\n v_linesofar = (floor(a_data.z / 4.0) + a_data.w * 64.0) * 2.0;\n\n vec2 pos = a_pos_normal.xy;\n\n // x is 1 if it's a round cap, 0 otherwise\n // y is 1 if the normal points up, and -1 if it points down\n mediump vec2 normal = a_pos_normal.zw;\n v_normal = normal;\n\n // these transformations used to be applied in the JS and native code bases.\n // moved them into the shader for clarity and simplicity.\n gapwidth = gapwidth / 2.0;\n float halfwidth = width / 2.0;\n offset = -1.0 * offset;\n\n float inset = gapwidth + (gapwidth > 0.0 ? ANTIALIASING : 0.0);\n float outset = gapwidth + halfwidth * (gapwidth > 0.0 ? 2.0 : 1.0) + ANTIALIASING;\n\n // Scale the extrusion vector down to a normal and then up by the line width\n // of this vertex.\n mediump vec2 dist = outset * a_extrude * scale;\n\n // Calculate the offset when drawing a line that is to the side of the actual line.\n // We do this by creating a vector that points towards the extrude, but rotate\n // it when we're drawing round end points (a_direction = -1 or 1) since their\n // extrude vector points in another direction.\n mediump float u = 0.5 * a_direction;\n mediump float t = 1.0 - abs(u);\n mediump vec2 offset2 = offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n vec4 projected_extrude = u_matrix * vec4(dist / u_ratio, 0.0, 0.0);\n gl_Position = u_matrix * vec4(pos + offset2 / u_ratio, 0.0, 1.0) + projected_extrude;\n\n // calculate how much the perspective view squishes or stretches the extrude\n float extrude_length_without_perspective = length(dist);\n float extrude_length_with_perspective = length(projected_extrude.xy / gl_Position.w * u_gl_units_to_pixels);\n v_gamma_scale = extrude_length_without_perspective / extrude_length_with_perspective;\n\n v_width2 = vec2(outset, inset);\n}\n"},lineGradient:{fragmentSource:"\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n\nuniform sampler2D u_image;\n\nvarying vec2 v_width2;\nvarying vec2 v_normal;\nvarying float v_gamma_scale;\nvarying highp float v_lineprogress;\n\nvoid main() {\n #pragma mapbox: initialize lowp float blur\n #pragma mapbox: initialize lowp float opacity\n\n // Calculate the distance of the pixel from the line in pixels.\n float dist = length(v_normal) * v_width2.s;\n\n // Calculate the antialiasing fade factor. This is either when fading in\n // the line in case of an offset line (v_width2.t) or when fading out\n // (v_width2.s)\n float blur2 = (blur + 1.0 / DEVICE_PIXEL_RATIO) * v_gamma_scale;\n float alpha = clamp(min(dist - (v_width2.t - blur2), v_width2.s - dist) / blur2, 0.0, 1.0);\n\n // For gradient lines, v_lineprogress is the ratio along the entire line,\n // scaled to [0, 2^15), and the gradient ramp is stored in a texture.\n vec4 color = texture2D(u_image, vec2(v_lineprogress, 0.5));\n\n gl_FragColor = color * (alpha * opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"\n// the attribute conveying progress along a line is scaled to [0, 2^15)\n#define MAX_LINE_DISTANCE 32767.0\n\n// the distance over which the line edge fades out.\n// Retina devices need a smaller distance to avoid aliasing.\n#define ANTIALIASING 1.0 / DEVICE_PIXEL_RATIO / 2.0\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\nattribute vec4 a_pos_normal;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform vec2 u_gl_units_to_pixels;\n\nvarying vec2 v_normal;\nvarying vec2 v_width2;\nvarying float v_gamma_scale;\nvarying highp float v_lineprogress;\n\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n#pragma mapbox: define mediump float gapwidth\n#pragma mapbox: define lowp float offset\n#pragma mapbox: define mediump float width\n\nvoid main() {\n #pragma mapbox: initialize lowp float blur\n #pragma mapbox: initialize lowp float opacity\n #pragma mapbox: initialize mediump float gapwidth\n #pragma mapbox: initialize lowp float offset\n #pragma mapbox: initialize mediump float width\n\n vec2 a_extrude = a_data.xy - 128.0;\n float a_direction = mod(a_data.z, 4.0) - 1.0;\n\n v_lineprogress = (floor(a_data.z / 4.0) + a_data.w * 64.0) * 2.0 / MAX_LINE_DISTANCE;\n\n vec2 pos = a_pos_normal.xy;\n\n // x is 1 if it's a round cap, 0 otherwise\n // y is 1 if the normal points up, and -1 if it points down\n mediump vec2 normal = a_pos_normal.zw;\n v_normal = normal;\n\n // these transformations used to be applied in the JS and native code bases.\n // moved them into the shader for clarity and simplicity.\n gapwidth = gapwidth / 2.0;\n float halfwidth = width / 2.0;\n offset = -1.0 * offset;\n\n float inset = gapwidth + (gapwidth > 0.0 ? ANTIALIASING : 0.0);\n float outset = gapwidth + halfwidth * (gapwidth > 0.0 ? 2.0 : 1.0) + ANTIALIASING;\n\n // Scale the extrusion vector down to a normal and then up by the line width\n // of this vertex.\n mediump vec2 dist = outset * a_extrude * scale;\n\n // Calculate the offset when drawing a line that is to the side of the actual line.\n // We do this by creating a vector that points towards the extrude, but rotate\n // it when we're drawing round end points (a_direction = -1 or 1) since their\n // extrude vector points in another direction.\n mediump float u = 0.5 * a_direction;\n mediump float t = 1.0 - abs(u);\n mediump vec2 offset2 = offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n vec4 projected_extrude = u_matrix * vec4(dist / u_ratio, 0.0, 0.0);\n gl_Position = u_matrix * vec4(pos + offset2 / u_ratio, 0.0, 1.0) + projected_extrude;\n\n // calculate how much the perspective view squishes or stretches the extrude\n float extrude_length_without_perspective = length(dist);\n float extrude_length_with_perspective = length(projected_extrude.xy / gl_Position.w * u_gl_units_to_pixels);\n v_gamma_scale = extrude_length_without_perspective / extrude_length_with_perspective;\n\n v_width2 = vec2(outset, inset);\n}\n"},linePattern:{fragmentSource:"uniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform vec2 u_texsize;\nuniform float u_fade;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_normal;\nvarying vec2 v_width2;\nvarying float v_linesofar;\nvarying float v_gamma_scale;\n\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n #pragma mapbox: initialize lowp float blur\n #pragma mapbox: initialize lowp float opacity\n\n // Calculate the distance of the pixel from the line in pixels.\n float dist = length(v_normal) * v_width2.s;\n\n // Calculate the antialiasing fade factor. This is either when fading in\n // the line in case of an offset line (v_width2.t) or when fading out\n // (v_width2.s)\n float blur2 = (blur + 1.0 / DEVICE_PIXEL_RATIO) * v_gamma_scale;\n float alpha = clamp(min(dist - (v_width2.t - blur2), v_width2.s - dist) / blur2, 0.0, 1.0);\n\n float x_a = mod(v_linesofar / u_pattern_size_a.x, 1.0);\n float x_b = mod(v_linesofar / u_pattern_size_b.x, 1.0);\n\n // v_normal.y is 0 at the midpoint of the line, -1 at the lower edge, 1 at the upper edge\n // we clamp the line width outset to be between 0 and half the pattern height plus padding (2.0)\n // to ensure we don't sample outside the designated symbol on the sprite sheet.\n // 0.5 is added to shift the component to be bounded between 0 and 1 for interpolation of\n // the texture coordinate\n float y_a = 0.5 + (v_normal.y * clamp(v_width2.s, 0.0, (u_pattern_size_a.y + 2.0) / 2.0) / u_pattern_size_a.y);\n float y_b = 0.5 + (v_normal.y * clamp(v_width2.s, 0.0, (u_pattern_size_b.y + 2.0) / 2.0) / u_pattern_size_b.y);\n vec2 pos_a = mix(u_pattern_tl_a / u_texsize, u_pattern_br_a / u_texsize, vec2(x_a, y_a));\n vec2 pos_b = mix(u_pattern_tl_b / u_texsize, u_pattern_br_b / u_texsize, vec2(x_b, y_b));\n\n vec4 color = mix(texture2D(u_image, pos_a), texture2D(u_image, pos_b), u_fade);\n\n gl_FragColor = color * alpha * opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\n// We scale the distance before adding it to the buffers so that we can store\n// long distances for long segments. Use this value to unscale the distance.\n#define LINE_DISTANCE_SCALE 2.0\n\n// the distance over which the line edge fades out.\n// Retina devices need a smaller distance to avoid aliasing.\n#define ANTIALIASING 1.0 / DEVICE_PIXEL_RATIO / 2.0\n\nattribute vec4 a_pos_normal;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform vec2 u_gl_units_to_pixels;\n\nvarying vec2 v_normal;\nvarying vec2 v_width2;\nvarying float v_linesofar;\nvarying float v_gamma_scale;\n\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n#pragma mapbox: define lowp float offset\n#pragma mapbox: define mediump float gapwidth\n#pragma mapbox: define mediump float width\n\nvoid main() {\n #pragma mapbox: initialize lowp float blur\n #pragma mapbox: initialize lowp float opacity\n #pragma mapbox: initialize lowp float offset\n #pragma mapbox: initialize mediump float gapwidth\n #pragma mapbox: initialize mediump float width\n\n vec2 a_extrude = a_data.xy - 128.0;\n float a_direction = mod(a_data.z, 4.0) - 1.0;\n float a_linesofar = (floor(a_data.z / 4.0) + a_data.w * 64.0) * LINE_DISTANCE_SCALE;\n\n vec2 pos = a_pos_normal.xy;\n\n // x is 1 if it's a round cap, 0 otherwise\n // y is 1 if the normal points up, and -1 if it points down\n mediump vec2 normal = a_pos_normal.zw;\n v_normal = normal;\n\n // these transformations used to be applied in the JS and native code bases.\n // moved them into the shader for clarity and simplicity.\n gapwidth = gapwidth / 2.0;\n float halfwidth = width / 2.0;\n offset = -1.0 * offset;\n\n float inset = gapwidth + (gapwidth > 0.0 ? ANTIALIASING : 0.0);\n float outset = gapwidth + halfwidth * (gapwidth > 0.0 ? 2.0 : 1.0) + ANTIALIASING;\n\n // Scale the extrusion vector down to a normal and then up by the line width\n // of this vertex.\n mediump vec2 dist = outset * a_extrude * scale;\n\n // Calculate the offset when drawing a line that is to the side of the actual line.\n // We do this by creating a vector that points towards the extrude, but rotate\n // it when we're drawing round end points (a_direction = -1 or 1) since their\n // extrude vector points in another direction.\n mediump float u = 0.5 * a_direction;\n mediump float t = 1.0 - abs(u);\n mediump vec2 offset2 = offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n vec4 projected_extrude = u_matrix * vec4(dist / u_ratio, 0.0, 0.0);\n gl_Position = u_matrix * vec4(pos + offset2 / u_ratio, 0.0, 1.0) + projected_extrude;\n\n // calculate how much the perspective view squishes or stretches the extrude\n float extrude_length_without_perspective = length(dist);\n float extrude_length_with_perspective = length(projected_extrude.xy / gl_Position.w * u_gl_units_to_pixels);\n v_gamma_scale = extrude_length_without_perspective / extrude_length_with_perspective;\n\n v_linesofar = a_linesofar;\n v_width2 = vec2(outset, inset);\n}\n"},lineSDF:{fragmentSource:"\nuniform sampler2D u_image;\nuniform float u_sdfgamma;\nuniform float u_mix;\n\nvarying vec2 v_normal;\nvarying vec2 v_width2;\nvarying vec2 v_tex_a;\nvarying vec2 v_tex_b;\nvarying float v_gamma_scale;\n\n#pragma mapbox: define highp vec4 color\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n#pragma mapbox: define mediump float width\n#pragma mapbox: define lowp float floorwidth\n\nvoid main() {\n #pragma mapbox: initialize highp vec4 color\n #pragma mapbox: initialize lowp float blur\n #pragma mapbox: initialize lowp float opacity\n #pragma mapbox: initialize mediump float width\n #pragma mapbox: initialize lowp float floorwidth\n\n // Calculate the distance of the pixel from the line in pixels.\n float dist = length(v_normal) * v_width2.s;\n\n // Calculate the antialiasing fade factor. This is either when fading in\n // the line in case of an offset line (v_width2.t) or when fading out\n // (v_width2.s)\n float blur2 = (blur + 1.0 / DEVICE_PIXEL_RATIO) * v_gamma_scale;\n float alpha = clamp(min(dist - (v_width2.t - blur2), v_width2.s - dist) / blur2, 0.0, 1.0);\n\n float sdfdist_a = texture2D(u_image, v_tex_a).a;\n float sdfdist_b = texture2D(u_image, v_tex_b).a;\n float sdfdist = mix(sdfdist_a, sdfdist_b, u_mix);\n alpha *= smoothstep(0.5 - u_sdfgamma / floorwidth, 0.5 + u_sdfgamma / floorwidth, sdfdist);\n\n gl_FragColor = color * (alpha * opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\n// We scale the distance before adding it to the buffers so that we can store\n// long distances for long segments. Use this value to unscale the distance.\n#define LINE_DISTANCE_SCALE 2.0\n\n// the distance over which the line edge fades out.\n// Retina devices need a smaller distance to avoid aliasing.\n#define ANTIALIASING 1.0 / DEVICE_PIXEL_RATIO / 2.0\n\nattribute vec4 a_pos_normal;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform vec2 u_patternscale_a;\nuniform float u_tex_y_a;\nuniform vec2 u_patternscale_b;\nuniform float u_tex_y_b;\nuniform vec2 u_gl_units_to_pixels;\n\nvarying vec2 v_normal;\nvarying vec2 v_width2;\nvarying vec2 v_tex_a;\nvarying vec2 v_tex_b;\nvarying float v_gamma_scale;\n\n#pragma mapbox: define highp vec4 color\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n#pragma mapbox: define mediump float gapwidth\n#pragma mapbox: define lowp float offset\n#pragma mapbox: define mediump float width\n#pragma mapbox: define lowp float floorwidth\n\nvoid main() {\n #pragma mapbox: initialize highp vec4 color\n #pragma mapbox: initialize lowp float blur\n #pragma mapbox: initialize lowp float opacity\n #pragma mapbox: initialize mediump float gapwidth\n #pragma mapbox: initialize lowp float offset\n #pragma mapbox: initialize mediump float width\n #pragma mapbox: initialize lowp float floorwidth\n\n vec2 a_extrude = a_data.xy - 128.0;\n float a_direction = mod(a_data.z, 4.0) - 1.0;\n float a_linesofar = (floor(a_data.z / 4.0) + a_data.w * 64.0) * LINE_DISTANCE_SCALE;\n\n vec2 pos = a_pos_normal.xy;\n\n // x is 1 if it's a round cap, 0 otherwise\n // y is 1 if the normal points up, and -1 if it points down\n mediump vec2 normal = a_pos_normal.zw;\n v_normal = normal;\n\n // these transformations used to be applied in the JS and native code bases.\n // moved them into the shader for clarity and simplicity.\n gapwidth = gapwidth / 2.0;\n float halfwidth = width / 2.0;\n offset = -1.0 * offset;\n\n float inset = gapwidth + (gapwidth > 0.0 ? ANTIALIASING : 0.0);\n float outset = gapwidth + halfwidth * (gapwidth > 0.0 ? 2.0 : 1.0) + ANTIALIASING;\n\n // Scale the extrusion vector down to a normal and then up by the line width\n // of this vertex.\n mediump vec2 dist =outset * a_extrude * scale;\n\n // Calculate the offset when drawing a line that is to the side of the actual line.\n // We do this by creating a vector that points towards the extrude, but rotate\n // it when we're drawing round end points (a_direction = -1 or 1) since their\n // extrude vector points in another direction.\n mediump float u = 0.5 * a_direction;\n mediump float t = 1.0 - abs(u);\n mediump vec2 offset2 = offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n vec4 projected_extrude = u_matrix * vec4(dist / u_ratio, 0.0, 0.0);\n gl_Position = u_matrix * vec4(pos + offset2 / u_ratio, 0.0, 1.0) + projected_extrude;\n\n // calculate how much the perspective view squishes or stretches the extrude\n float extrude_length_without_perspective = length(dist);\n float extrude_length_with_perspective = length(projected_extrude.xy / gl_Position.w * u_gl_units_to_pixels);\n v_gamma_scale = extrude_length_without_perspective / extrude_length_with_perspective;\n\n v_tex_a = vec2(a_linesofar * u_patternscale_a.x / floorwidth, normal.y * u_patternscale_a.y + u_tex_y_a);\n v_tex_b = vec2(a_linesofar * u_patternscale_b.x / floorwidth, normal.y * u_patternscale_b.y + u_tex_y_b);\n\n v_width2 = vec2(outset, inset);\n}\n"},raster:{fragmentSource:"uniform float u_fade_t;\nuniform float u_opacity;\nuniform sampler2D u_image0;\nuniform sampler2D u_image1;\nvarying vec2 v_pos0;\nvarying vec2 v_pos1;\n\nuniform float u_brightness_low;\nuniform float u_brightness_high;\n\nuniform float u_saturation_factor;\nuniform float u_contrast_factor;\nuniform vec3 u_spin_weights;\n\nvoid main() {\n\n // read and cross-fade colors from the main and parent tiles\n vec4 color0 = texture2D(u_image0, v_pos0);\n vec4 color1 = texture2D(u_image1, v_pos1);\n if (color0.a > 0.0) {\n color0.rgb = color0.rgb / color0.a;\n }\n if (color1.a > 0.0) {\n color1.rgb = color1.rgb / color1.a;\n }\n vec4 color = mix(color0, color1, u_fade_t);\n color.a *= u_opacity;\n vec3 rgb = color.rgb;\n\n // spin\n rgb = vec3(\n dot(rgb, u_spin_weights.xyz),\n dot(rgb, u_spin_weights.zxy),\n dot(rgb, u_spin_weights.yzx));\n\n // saturation\n float average = (color.r + color.g + color.b) / 3.0;\n rgb += (average - rgb) * u_saturation_factor;\n\n // contrast\n rgb = (rgb - 0.5) * u_contrast_factor + 0.5;\n\n // brightness\n vec3 u_high_vec = vec3(u_brightness_low, u_brightness_low, u_brightness_low);\n vec3 u_low_vec = vec3(u_brightness_high, u_brightness_high, u_brightness_high);\n\n gl_FragColor = vec4(mix(u_high_vec, u_low_vec, rgb) * color.a, color.a);\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"uniform mat4 u_matrix;\nuniform vec2 u_tl_parent;\nuniform float u_scale_parent;\nuniform float u_buffer_scale;\n\nattribute vec2 a_pos;\nattribute vec2 a_texture_pos;\n\nvarying vec2 v_pos0;\nvarying vec2 v_pos1;\n\nvoid main() {\n gl_Position = u_matrix * vec4(a_pos, 0, 1);\n // We are using Int16 for texture position coordinates to give us enough precision for\n // fractional coordinates. We use 8192 to scale the texture coordinates in the buffer\n // as an arbitrarily high number to preserve adequate precision when rendering.\n // This is also the same value as the EXTENT we are using for our tile buffer pos coordinates,\n // so math for modifying either is consistent.\n v_pos0 = (((a_texture_pos / 8192.0) - 0.5) / u_buffer_scale ) + 0.5;\n v_pos1 = (v_pos0 * u_scale_parent) + u_tl_parent;\n}\n"},symbolIcon:{fragmentSource:"uniform sampler2D u_texture;\n\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_tex;\nvarying float v_fade_opacity;\n\nvoid main() {\n #pragma mapbox: initialize lowp float opacity\n\n lowp float alpha = opacity * v_fade_opacity;\n gl_FragColor = texture2D(u_texture, v_tex) * alpha;\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"const float PI = 3.141592653589793;\n\nattribute vec4 a_pos_offset;\nattribute vec4 a_data;\nattribute vec3 a_projected_pos;\nattribute float a_fade_opacity;\n\nuniform bool u_is_size_zoom_constant;\nuniform bool u_is_size_feature_constant;\nuniform highp float u_size_t; // used to interpolate between zoom stops when size is a composite function\nuniform highp float u_size; // used when size is both zoom and feature constant\nuniform highp float u_camera_to_center_distance;\nuniform highp float u_pitch;\nuniform bool u_rotate_symbol;\nuniform highp float u_aspect_ratio;\nuniform float u_fade_change;\n\n#pragma mapbox: define lowp float opacity\n\nuniform mat4 u_matrix;\nuniform mat4 u_label_plane_matrix;\nuniform mat4 u_gl_coord_matrix;\n\nuniform bool u_is_text;\nuniform bool u_pitch_with_map;\n\nuniform vec2 u_texsize;\n\nvarying vec2 v_tex;\nvarying float v_fade_opacity;\n\nvoid main() {\n #pragma mapbox: initialize lowp float opacity\n\n vec2 a_pos = a_pos_offset.xy;\n vec2 a_offset = a_pos_offset.zw;\n\n vec2 a_tex = a_data.xy;\n vec2 a_size = a_data.zw;\n\n highp float segment_angle = -a_projected_pos[2];\n\n float size;\n if (!u_is_size_zoom_constant && !u_is_size_feature_constant) {\n size = mix(a_size[0], a_size[1], u_size_t) / 10.0;\n } else if (u_is_size_zoom_constant && !u_is_size_feature_constant) {\n size = a_size[0] / 10.0;\n } else if (!u_is_size_zoom_constant && u_is_size_feature_constant) {\n size = u_size;\n } else {\n size = u_size;\n }\n\n vec4 projectedPoint = u_matrix * vec4(a_pos, 0, 1);\n highp float camera_to_anchor_distance = projectedPoint.w;\n // See comments in symbol_sdf.vertex\n highp float distance_ratio = u_pitch_with_map ?\n camera_to_anchor_distance / u_camera_to_center_distance :\n u_camera_to_center_distance / camera_to_anchor_distance;\n highp float perspective_ratio = clamp(\n 0.5 + 0.5 * distance_ratio,\n 0.0, // Prevents oversized near-field symbols in pitched/overzoomed tiles\n 4.0);\n\n size *= perspective_ratio;\n\n float fontScale = u_is_text ? size / 24.0 : size;\n\n highp float symbol_rotation = 0.0;\n if (u_rotate_symbol) {\n // See comments in symbol_sdf.vertex\n vec4 offsetProjectedPoint = u_matrix * vec4(a_pos + vec2(1, 0), 0, 1);\n\n vec2 a = projectedPoint.xy / projectedPoint.w;\n vec2 b = offsetProjectedPoint.xy / offsetProjectedPoint.w;\n\n symbol_rotation = atan((b.y - a.y) / u_aspect_ratio, b.x - a.x);\n }\n\n highp float angle_sin = sin(segment_angle + symbol_rotation);\n highp float angle_cos = cos(segment_angle + symbol_rotation);\n mat2 rotation_matrix = mat2(angle_cos, -1.0 * angle_sin, angle_sin, angle_cos);\n\n vec4 projected_pos = u_label_plane_matrix * vec4(a_projected_pos.xy, 0.0, 1.0);\n gl_Position = u_gl_coord_matrix * vec4(projected_pos.xy / projected_pos.w + rotation_matrix * (a_offset / 32.0 * fontScale), 0.0, 1.0);\n\n v_tex = a_tex / u_texsize;\n vec2 fade_opacity = unpack_opacity(a_fade_opacity);\n float fade_change = fade_opacity[1] > 0.5 ? u_fade_change : -u_fade_change;\n v_fade_opacity = max(0.0, min(1.0, fade_opacity[0] + fade_change));\n}\n"},symbolSDF:{fragmentSource:"#define SDF_PX 8.0\n#define EDGE_GAMMA 0.105/DEVICE_PIXEL_RATIO\n\nuniform bool u_is_halo;\n#pragma mapbox: define highp vec4 fill_color\n#pragma mapbox: define highp vec4 halo_color\n#pragma mapbox: define lowp float opacity\n#pragma mapbox: define lowp float halo_width\n#pragma mapbox: define lowp float halo_blur\n\nuniform sampler2D u_texture;\nuniform highp float u_gamma_scale;\nuniform bool u_is_text;\n\nvarying vec2 v_data0;\nvarying vec3 v_data1;\n\nvoid main() {\n #pragma mapbox: initialize highp vec4 fill_color\n #pragma mapbox: initialize highp vec4 halo_color\n #pragma mapbox: initialize lowp float opacity\n #pragma mapbox: initialize lowp float halo_width\n #pragma mapbox: initialize lowp float halo_blur\n\n vec2 tex = v_data0.xy;\n float gamma_scale = v_data1.x;\n float size = v_data1.y;\n float fade_opacity = v_data1[2];\n\n float fontScale = u_is_text ? size / 24.0 : size;\n\n lowp vec4 color = fill_color;\n highp float gamma = EDGE_GAMMA / (fontScale * u_gamma_scale);\n lowp float buff = (256.0 - 64.0) / 256.0;\n if (u_is_halo) {\n color = halo_color;\n gamma = (halo_blur * 1.19 / SDF_PX + EDGE_GAMMA) / (fontScale * u_gamma_scale);\n buff = (6.0 - halo_width / fontScale) / SDF_PX;\n }\n\n lowp float dist = texture2D(u_texture, tex).a;\n highp float gamma_scaled = gamma * gamma_scale;\n highp float alpha = smoothstep(buff - gamma_scaled, buff + gamma_scaled, dist);\n\n gl_FragColor = color * (alpha * opacity * fade_opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"const float PI = 3.141592653589793;\n\nattribute vec4 a_pos_offset;\nattribute vec4 a_data;\nattribute vec3 a_projected_pos;\nattribute float a_fade_opacity;\n\n// contents of a_size vary based on the type of property value\n// used for {text,icon}-size.\n// For constants, a_size is disabled.\n// For source functions, we bind only one value per vertex: the value of {text,icon}-size evaluated for the current feature.\n// For composite functions:\n// [ text-size(lowerZoomStop, feature),\n// text-size(upperZoomStop, feature) ]\nuniform bool u_is_size_zoom_constant;\nuniform bool u_is_size_feature_constant;\nuniform highp float u_size_t; // used to interpolate between zoom stops when size is a composite function\nuniform highp float u_size; // used when size is both zoom and feature constant\n\n#pragma mapbox: define highp vec4 fill_color\n#pragma mapbox: define highp vec4 halo_color\n#pragma mapbox: define lowp float opacity\n#pragma mapbox: define lowp float halo_width\n#pragma mapbox: define lowp float halo_blur\n\nuniform mat4 u_matrix;\nuniform mat4 u_label_plane_matrix;\nuniform mat4 u_gl_coord_matrix;\n\nuniform bool u_is_text;\nuniform bool u_pitch_with_map;\nuniform highp float u_pitch;\nuniform bool u_rotate_symbol;\nuniform highp float u_aspect_ratio;\nuniform highp float u_camera_to_center_distance;\nuniform float u_fade_change;\n\nuniform vec2 u_texsize;\n\nvarying vec2 v_data0;\nvarying vec3 v_data1;\n\nvoid main() {\n #pragma mapbox: initialize highp vec4 fill_color\n #pragma mapbox: initialize highp vec4 halo_color\n #pragma mapbox: initialize lowp float opacity\n #pragma mapbox: initialize lowp float halo_width\n #pragma mapbox: initialize lowp float halo_blur\n\n vec2 a_pos = a_pos_offset.xy;\n vec2 a_offset = a_pos_offset.zw;\n\n vec2 a_tex = a_data.xy;\n vec2 a_size = a_data.zw;\n\n highp float segment_angle = -a_projected_pos[2];\n float size;\n\n if (!u_is_size_zoom_constant && !u_is_size_feature_constant) {\n size = mix(a_size[0], a_size[1], u_size_t) / 10.0;\n } else if (u_is_size_zoom_constant && !u_is_size_feature_constant) {\n size = a_size[0] / 10.0;\n } else if (!u_is_size_zoom_constant && u_is_size_feature_constant) {\n size = u_size;\n } else {\n size = u_size;\n }\n\n vec4 projectedPoint = u_matrix * vec4(a_pos, 0, 1);\n highp float camera_to_anchor_distance = projectedPoint.w;\n // If the label is pitched with the map, layout is done in pitched space,\n // which makes labels in the distance smaller relative to viewport space.\n // We counteract part of that effect by multiplying by the perspective ratio.\n // If the label isn't pitched with the map, we do layout in viewport space,\n // which makes labels in the distance larger relative to the features around\n // them. We counteract part of that effect by dividing by the perspective ratio.\n highp float distance_ratio = u_pitch_with_map ?\n camera_to_anchor_distance / u_camera_to_center_distance :\n u_camera_to_center_distance / camera_to_anchor_distance;\n highp float perspective_ratio = clamp(\n 0.5 + 0.5 * distance_ratio,\n 0.0, // Prevents oversized near-field symbols in pitched/overzoomed tiles\n 4.0);\n\n size *= perspective_ratio;\n\n float fontScale = u_is_text ? size / 24.0 : size;\n\n highp float symbol_rotation = 0.0;\n if (u_rotate_symbol) {\n // Point labels with 'rotation-alignment: map' are horizontal with respect to tile units\n // To figure out that angle in projected space, we draw a short horizontal line in tile\n // space, project it, and measure its angle in projected space.\n vec4 offsetProjectedPoint = u_matrix * vec4(a_pos + vec2(1, 0), 0, 1);\n\n vec2 a = projectedPoint.xy / projectedPoint.w;\n vec2 b = offsetProjectedPoint.xy / offsetProjectedPoint.w;\n\n symbol_rotation = atan((b.y - a.y) / u_aspect_ratio, b.x - a.x);\n }\n\n highp float angle_sin = sin(segment_angle + symbol_rotation);\n highp float angle_cos = cos(segment_angle + symbol_rotation);\n mat2 rotation_matrix = mat2(angle_cos, -1.0 * angle_sin, angle_sin, angle_cos);\n\n vec4 projected_pos = u_label_plane_matrix * vec4(a_projected_pos.xy, 0.0, 1.0);\n gl_Position = u_gl_coord_matrix * vec4(projected_pos.xy / projected_pos.w + rotation_matrix * (a_offset / 32.0 * fontScale), 0.0, 1.0);\n float gamma_scale = gl_Position.w;\n\n vec2 tex = a_tex / u_texsize;\n vec2 fade_opacity = unpack_opacity(a_fade_opacity);\n float fade_change = fade_opacity[1] > 0.5 ? u_fade_change : -u_fade_change;\n float interpolated_fade_opacity = max(0.0, min(1.0, fade_opacity[0] + fade_change));\n\n v_data0 = vec2(tex.x, tex.y);\n v_data1 = vec3(gamma_scale, size, interpolated_fade_opacity);\n}\n"}},tr=/#pragma mapbox: ([\w]+) ([\w]+) ([\w]+) ([\w]+)/g,er=function(t){var e=Qe[t],r={};e.fragmentSource=e.fragmentSource.replace(tr,function(t,e,n,i,a){return r[a]=!0,"define"===e?"\n#ifndef HAS_UNIFORM_u_"+a+"\nvarying "+n+" "+i+" "+a+";\n#else\nuniform "+n+" "+i+" u_"+a+";\n#endif\n":"\n#ifdef HAS_UNIFORM_u_"+a+"\n "+n+" "+i+" "+a+" = u_"+a+";\n#endif\n"}),e.vertexSource=e.vertexSource.replace(tr,function(t,e,n,i,a){var o="float"===i?"vec2":"vec4";return r[a]?"define"===e?"\n#ifndef HAS_UNIFORM_u_"+a+"\nuniform lowp float a_"+a+"_t;\nattribute "+n+" "+o+" a_"+a+";\nvarying "+n+" "+i+" "+a+";\n#else\nuniform "+n+" "+i+" u_"+a+";\n#endif\n":"\n#ifndef HAS_UNIFORM_u_"+a+"\n "+a+" = unpack_mix_"+o+"(a_"+a+", a_"+a+"_t);\n#else\n "+n+" "+i+" "+a+" = u_"+a+";\n#endif\n":"define"===e?"\n#ifndef HAS_UNIFORM_u_"+a+"\nuniform lowp float a_"+a+"_t;\nattribute "+n+" "+o+" a_"+a+";\n#else\nuniform "+n+" "+i+" u_"+a+";\n#endif\n":"\n#ifndef HAS_UNIFORM_u_"+a+"\n "+n+" "+i+" "+a+" = unpack_mix_"+o+"(a_"+a+", a_"+a+"_t);\n#else\n "+n+" "+i+" "+a+" = u_"+a+";\n#endif\n"})};for(var rr in Qe)er(rr);var nr=Qe,ir=function(t,e,r,n){var i=t.gl;this.program=i.createProgram();var o=r.defines().concat("#define DEVICE_PIXEL_RATIO "+a.devicePixelRatio.toFixed(1));n&&o.push("#define OVERDRAW_INSPECTOR;");var s=o.concat(nr.prelude.fragmentSource,e.fragmentSource).join("\n"),l=o.concat(nr.prelude.vertexSource,e.vertexSource).join("\n"),c=i.createShader(i.FRAGMENT_SHADER);i.shaderSource(c,s),i.compileShader(c),i.attachShader(this.program,c);var u=i.createShader(i.VERTEX_SHADER);i.shaderSource(u,l),i.compileShader(u),i.attachShader(this.program,u);for(var h=r.layoutAttributes||[],f=0;f>16,s>>16),n.uniform2f(r.uniforms.u_pixel_coord_lower,65535&o,65535&s)};function mr(t,e,r,n,i){if(!dr(r.paint.get("fill-pattern"),t))for(var a=!0,o=0,s=n;o0){var l=a.now(),c=(l-e.timeAdded)/s,u=r?(l-r.timeAdded)/s:-1,h=n.getSource(),f=o.coveringZoomLevel({tileSize:h.tileSize,roundZoom:h.roundZoom}),p=!r||Math.abs(r.tileID.overscaledZ-f)>Math.abs(e.tileID.overscaledZ-f),d=p&&e.refreshedUponExpiration?1:t.clamp(p?c:1-u,0,1);return e.refreshedUponExpiration&&c>=1&&(e.refreshedUponExpiration=!1),r?{opacity:1,mix:1-d}:{opacity:d,mix:0}}return{opacity:1,mix:0}}function Er(e,r,n){var i=e.context,o=i.gl;i.lineWidth.set(1*a.devicePixelRatio);var s=n.posMatrix,l=e.useProgram("debug");i.setDepthMode(qt.disabled),i.setStencilMode(Ht.disabled),i.setColorMode(e.colorModeForRenderPass()),o.uniformMatrix4fv(l.uniforms.u_matrix,!1,s),o.uniform4f(l.uniforms.u_color,1,0,0,1),e.debugVAO.bind(i,l,e.debugBuffer,[]),o.drawArrays(o.LINE_STRIP,0,e.debugBuffer.length);for(var c=function(t,e,r,n){n=n||1;var i,a,o,s,l,c,u,h,f=[];for(i=0,a=t.length;i":[24,[4,18,20,9,4,0]],"?":[18,[3,16,3,17,4,19,5,20,7,21,11,21,13,20,14,19,15,17,15,15,14,13,13,12,9,10,9,7,-1,-1,9,2,8,1,9,0,10,1,9,2]],"@":[27,[18,13,17,15,15,16,12,16,10,15,9,14,8,11,8,8,9,6,11,5,14,5,16,6,17,8,-1,-1,12,16,10,14,9,11,9,8,10,6,11,5,-1,-1,18,16,17,8,17,6,19,5,21,5,23,7,24,10,24,12,23,15,22,17,20,19,18,20,15,21,12,21,9,20,7,19,5,17,4,15,3,12,3,9,4,6,5,4,7,2,9,1,12,0,15,0,18,1,20,2,21,3,-1,-1,19,16,18,8,18,6,19,5]],A:[18,[9,21,1,0,-1,-1,9,21,17,0,-1,-1,4,7,14,7]],B:[21,[4,21,4,0,-1,-1,4,21,13,21,16,20,17,19,18,17,18,15,17,13,16,12,13,11,-1,-1,4,11,13,11,16,10,17,9,18,7,18,4,17,2,16,1,13,0,4,0]],C:[21,[18,16,17,18,15,20,13,21,9,21,7,20,5,18,4,16,3,13,3,8,4,5,5,3,7,1,9,0,13,0,15,1,17,3,18,5]],D:[21,[4,21,4,0,-1,-1,4,21,11,21,14,20,16,18,17,16,18,13,18,8,17,5,16,3,14,1,11,0,4,0]],E:[19,[4,21,4,0,-1,-1,4,21,17,21,-1,-1,4,11,12,11,-1,-1,4,0,17,0]],F:[18,[4,21,4,0,-1,-1,4,21,17,21,-1,-1,4,11,12,11]],G:[21,[18,16,17,18,15,20,13,21,9,21,7,20,5,18,4,16,3,13,3,8,4,5,5,3,7,1,9,0,13,0,15,1,17,3,18,5,18,8,-1,-1,13,8,18,8]],H:[22,[4,21,4,0,-1,-1,18,21,18,0,-1,-1,4,11,18,11]],I:[8,[4,21,4,0]],J:[16,[12,21,12,5,11,2,10,1,8,0,6,0,4,1,3,2,2,5,2,7]],K:[21,[4,21,4,0,-1,-1,18,21,4,7,-1,-1,9,12,18,0]],L:[17,[4,21,4,0,-1,-1,4,0,16,0]],M:[24,[4,21,4,0,-1,-1,4,21,12,0,-1,-1,20,21,12,0,-1,-1,20,21,20,0]],N:[22,[4,21,4,0,-1,-1,4,21,18,0,-1,-1,18,21,18,0]],O:[22,[9,21,7,20,5,18,4,16,3,13,3,8,4,5,5,3,7,1,9,0,13,0,15,1,17,3,18,5,19,8,19,13,18,16,17,18,15,20,13,21,9,21]],P:[21,[4,21,4,0,-1,-1,4,21,13,21,16,20,17,19,18,17,18,14,17,12,16,11,13,10,4,10]],Q:[22,[9,21,7,20,5,18,4,16,3,13,3,8,4,5,5,3,7,1,9,0,13,0,15,1,17,3,18,5,19,8,19,13,18,16,17,18,15,20,13,21,9,21,-1,-1,12,4,18,-2]],R:[21,[4,21,4,0,-1,-1,4,21,13,21,16,20,17,19,18,17,18,15,17,13,16,12,13,11,4,11,-1,-1,11,11,18,0]],S:[20,[17,18,15,20,12,21,8,21,5,20,3,18,3,16,4,14,5,13,7,12,13,10,15,9,16,8,17,6,17,3,15,1,12,0,8,0,5,1,3,3]],T:[16,[8,21,8,0,-1,-1,1,21,15,21]],U:[22,[4,21,4,6,5,3,7,1,10,0,12,0,15,1,17,3,18,6,18,21]],V:[18,[1,21,9,0,-1,-1,17,21,9,0]],W:[24,[2,21,7,0,-1,-1,12,21,7,0,-1,-1,12,21,17,0,-1,-1,22,21,17,0]],X:[20,[3,21,17,0,-1,-1,17,21,3,0]],Y:[18,[1,21,9,11,9,0,-1,-1,17,21,9,11]],Z:[20,[17,21,3,0,-1,-1,3,21,17,21,-1,-1,3,0,17,0]],"[":[14,[4,25,4,-7,-1,-1,5,25,5,-7,-1,-1,4,25,11,25,-1,-1,4,-7,11,-7]],"\\":[14,[0,21,14,-3]],"]":[14,[9,25,9,-7,-1,-1,10,25,10,-7,-1,-1,3,25,10,25,-1,-1,3,-7,10,-7]],"^":[16,[6,15,8,18,10,15,-1,-1,3,12,8,17,13,12,-1,-1,8,17,8,0]],_:[16,[0,-2,16,-2]],"`":[10,[6,21,5,20,4,18,4,16,5,15,6,16,5,17]],a:[19,[15,14,15,0,-1,-1,15,11,13,13,11,14,8,14,6,13,4,11,3,8,3,6,4,3,6,1,8,0,11,0,13,1,15,3]],b:[19,[4,21,4,0,-1,-1,4,11,6,13,8,14,11,14,13,13,15,11,16,8,16,6,15,3,13,1,11,0,8,0,6,1,4,3]],c:[18,[15,11,13,13,11,14,8,14,6,13,4,11,3,8,3,6,4,3,6,1,8,0,11,0,13,1,15,3]],d:[19,[15,21,15,0,-1,-1,15,11,13,13,11,14,8,14,6,13,4,11,3,8,3,6,4,3,6,1,8,0,11,0,13,1,15,3]],e:[18,[3,8,15,8,15,10,14,12,13,13,11,14,8,14,6,13,4,11,3,8,3,6,4,3,6,1,8,0,11,0,13,1,15,3]],f:[12,[10,21,8,21,6,20,5,17,5,0,-1,-1,2,14,9,14]],g:[19,[15,14,15,-2,14,-5,13,-6,11,-7,8,-7,6,-6,-1,-1,15,11,13,13,11,14,8,14,6,13,4,11,3,8,3,6,4,3,6,1,8,0,11,0,13,1,15,3]],h:[19,[4,21,4,0,-1,-1,4,10,7,13,9,14,12,14,14,13,15,10,15,0]],i:[8,[3,21,4,20,5,21,4,22,3,21,-1,-1,4,14,4,0]],j:[10,[5,21,6,20,7,21,6,22,5,21,-1,-1,6,14,6,-3,5,-6,3,-7,1,-7]],k:[17,[4,21,4,0,-1,-1,14,14,4,4,-1,-1,8,8,15,0]],l:[8,[4,21,4,0]],m:[30,[4,14,4,0,-1,-1,4,10,7,13,9,14,12,14,14,13,15,10,15,0,-1,-1,15,10,18,13,20,14,23,14,25,13,26,10,26,0]],n:[19,[4,14,4,0,-1,-1,4,10,7,13,9,14,12,14,14,13,15,10,15,0]],o:[19,[8,14,6,13,4,11,3,8,3,6,4,3,6,1,8,0,11,0,13,1,15,3,16,6,16,8,15,11,13,13,11,14,8,14]],p:[19,[4,14,4,-7,-1,-1,4,11,6,13,8,14,11,14,13,13,15,11,16,8,16,6,15,3,13,1,11,0,8,0,6,1,4,3]],q:[19,[15,14,15,-7,-1,-1,15,11,13,13,11,14,8,14,6,13,4,11,3,8,3,6,4,3,6,1,8,0,11,0,13,1,15,3]],r:[13,[4,14,4,0,-1,-1,4,8,5,11,7,13,9,14,12,14]],s:[17,[14,11,13,13,10,14,7,14,4,13,3,11,4,9,6,8,11,7,13,6,14,4,14,3,13,1,10,0,7,0,4,1,3,3]],t:[12,[5,21,5,4,6,1,8,0,10,0,-1,-1,2,14,9,14]],u:[19,[4,14,4,4,5,1,7,0,10,0,12,1,15,4,-1,-1,15,14,15,0]],v:[16,[2,14,8,0,-1,-1,14,14,8,0]],w:[22,[3,14,7,0,-1,-1,11,14,7,0,-1,-1,11,14,15,0,-1,-1,19,14,15,0]],x:[17,[3,14,14,0,-1,-1,14,14,3,0]],y:[16,[2,14,8,0,-1,-1,14,14,8,0,6,-4,4,-6,2,-7,1,-7]],z:[17,[14,14,3,0,-1,-1,3,14,14,14,-1,-1,3,0,14,0]],"{":[14,[9,25,7,24,6,23,5,21,5,19,6,17,7,16,8,14,8,12,6,10,-1,-1,7,24,6,22,6,20,7,18,8,17,9,15,9,13,8,11,4,9,8,7,9,5,9,3,8,1,7,0,6,-2,6,-4,7,-6,-1,-1,6,8,8,6,8,4,7,2,6,1,5,-1,5,-3,6,-5,7,-6,9,-7]],"|":[8,[4,25,4,-7]],"}":[14,[5,25,7,24,8,23,9,21,9,19,8,17,7,16,6,14,6,12,8,10,-1,-1,7,24,8,22,8,20,7,18,6,17,5,15,5,13,6,11,10,9,6,7,5,5,5,3,6,1,7,0,8,-2,8,-4,7,-6,-1,-1,8,8,6,6,6,4,7,2,8,1,9,-1,9,-3,8,-5,7,-6,5,-7]],"~":[24,[3,6,3,8,4,11,6,12,8,12,10,11,14,8,16,7,18,7,20,8,21,10,-1,-1,3,8,4,10,6,11,8,11,10,10,14,7,16,6,18,6,20,7,21,10,21,12]]},Lr={symbol:function(t,e,r,n){if("translucent"===t.renderPass){var i=t.context;i.setStencilMode(Ht.disabled),i.setColorMode(t.colorModeForRenderPass()),0!==r.paint.get("icon-opacity").constantOr(1)&&cr(t,e,r,n,!1,r.paint.get("icon-translate"),r.paint.get("icon-translate-anchor"),r.layout.get("icon-rotation-alignment"),r.layout.get("icon-pitch-alignment"),r.layout.get("icon-keep-upright")),0!==r.paint.get("text-opacity").constantOr(1)&&cr(t,e,r,n,!0,r.paint.get("text-translate"),r.paint.get("text-translate-anchor"),r.layout.get("text-rotation-alignment"),r.layout.get("text-pitch-alignment"),r.layout.get("text-keep-upright")),e.map.showCollisionBoxes&&function(t,e,r,n){or(t,e,r,n,!1),or(t,e,r,n,!0)}(t,e,r,n)}},circle:function(t,e,r,n){if("translucent"===t.renderPass){var i=r.paint.get("circle-opacity"),a=r.paint.get("circle-stroke-width"),o=r.paint.get("circle-stroke-opacity");if(0!==i.constantOr(1)||0!==a.constantOr(1)&&0!==o.constantOr(1)){var s=t.context,l=s.gl;s.setDepthMode(t.depthModeForSublayer(0,qt.ReadOnly)),s.setStencilMode(Ht.disabled),s.setColorMode(t.colorModeForRenderPass());for(var c=!0,u=0;u0?1-1/(1.001-i):-i),s.uniform1f(c.uniforms.u_contrast_factor,(a=r.paint.get("raster-contrast"))>0?1/(1-a):1+a),s.uniform3fv(c.uniforms.u_spin_weights,function(t){t*=Math.PI/180;var e=Math.sin(t),r=Math.cos(t);return[(2*r+1)/3,(-Math.sqrt(3)*e-r+1)/3,(Math.sqrt(3)*e-r+1)/3]}(r.paint.get("raster-hue-rotate"))),s.uniform1f(c.uniforms.u_buffer_scale,1),s.uniform1i(c.uniforms.u_image0,0),s.uniform1i(c.uniforms.u_image1,1);for(var u=n.length&&n[0].overscaledZ,h=0,f=n;he.row){var r=t;t=e,e=r}return{x0:t.column,y0:t.row,x1:e.column,y1:e.row,dx:e.column-t.column,dy:e.row-t.row}}function Ir(t,e,r,n,i){var a=Math.max(r,Math.floor(e.y0)),o=Math.min(n,Math.ceil(e.y1));if(t.x0===e.x0&&t.y0===e.y0?t.x0+e.dy/t.dy*t.dx0,h=e.dx<0,f=a;fl.dy&&(o=s,s=l,l=o),s.dy>c.dy&&(o=s,s=c,c=o),l.dy>c.dy&&(o=l,l=c,c=o),s.dy&&Ir(c,s,n,i,a),l.dy&&Ir(c,l,n,i,a)}zr.prototype.resize=function(t,e){var r=this.context.gl;if(this.width=t*a.devicePixelRatio,this.height=e*a.devicePixelRatio,this.context.viewport.set([0,0,this.width,this.height]),this.style)for(var n=0,i=this.style._order;n=0;this.currentLayer--){var m=n.style._layers[s[n.currentLayer]];m.source!==(g&&g.id)&&(v=[],(g=n.style.sourceCaches[m.source])&&(n.clearStencil(),v=g.getVisibleCoordinates(),g.getSource().isTileClipped&&n._renderTileClippingMasks(v))),n.renderLayer(n,g,m,v)}this.renderPass="translucent";var y,x=[];for(this.currentLayer=0,this.currentLayer;this.currentLayer0?e.pop():null},zr.prototype._createProgramCached=function(t,e){this.cache=this.cache||{};var r=""+t+(e.cacheKey||"")+(this._showOverdrawInspector?"/overdraw":"");return this.cache[r]||(this.cache[r]=new ir(this.context,nr[t],e,this._showOverdrawInspector)),this.cache[r]},zr.prototype.useProgram=function(t,e){var r=this._createProgramCached(t,e||this.emptyProgramConfiguration);return this.context.program.set(r.program),r};var Pr=t.default$20.vec4,Rr=t.default$20.mat4,Fr=t.default$20.mat2,Br=function(t,e,r){this.tileSize=512,this._renderWorldCopies=void 0===r||r,this._minZoom=t||0,this._maxZoom=e||22,this.latRange=[-85.05113,85.05113],this.width=0,this.height=0,this._center=new G(0,0),this.zoom=0,this.angle=0,this._fov=.6435011087932844,this._pitch=0,this._unmodified=!0,this._posMatrixCache={},this._alignedPosMatrixCache={}},Nr={minZoom:{configurable:!0},maxZoom:{configurable:!0},renderWorldCopies:{configurable:!0},worldSize:{configurable:!0},centerPoint:{configurable:!0},size:{configurable:!0},bearing:{configurable:!0},pitch:{configurable:!0},fov:{configurable:!0},zoom:{configurable:!0},center:{configurable:!0},unmodified:{configurable:!0},x:{configurable:!0},y:{configurable:!0},point:{configurable:!0}};Br.prototype.clone=function(){var t=new Br(this._minZoom,this._maxZoom,this._renderWorldCopies);return t.tileSize=this.tileSize,t.latRange=this.latRange,t.width=this.width,t.height=this.height,t._center=this._center,t.zoom=this.zoom,t.angle=this.angle,t._fov=this._fov,t._pitch=this._pitch,t._unmodified=this._unmodified,t._calcMatrices(),t},Nr.minZoom.get=function(){return this._minZoom},Nr.minZoom.set=function(t){this._minZoom!==t&&(this._minZoom=t,this.zoom=Math.max(this.zoom,t))},Nr.maxZoom.get=function(){return this._maxZoom},Nr.maxZoom.set=function(t){this._maxZoom!==t&&(this._maxZoom=t,this.zoom=Math.min(this.zoom,t))},Nr.renderWorldCopies.get=function(){return this._renderWorldCopies},Nr.renderWorldCopies.set=function(t){void 0===t?t=!0:null===t&&(t=!1),this._renderWorldCopies=t},Nr.worldSize.get=function(){return this.tileSize*this.scale},Nr.centerPoint.get=function(){return this.size._div(2)},Nr.size.get=function(){return new t.default$1(this.width,this.height)},Nr.bearing.get=function(){return-this.angle/Math.PI*180},Nr.bearing.set=function(e){var r=-t.wrap(e,-180,180)*Math.PI/180;this.angle!==r&&(this._unmodified=!1,this.angle=r,this._calcMatrices(),this.rotationMatrix=Fr.create(),Fr.rotate(this.rotationMatrix,this.rotationMatrix,this.angle))},Nr.pitch.get=function(){return this._pitch/Math.PI*180},Nr.pitch.set=function(e){var r=t.clamp(e,0,60)/180*Math.PI;this._pitch!==r&&(this._unmodified=!1,this._pitch=r,this._calcMatrices())},Nr.fov.get=function(){return this._fov/Math.PI*180},Nr.fov.set=function(t){t=Math.max(.01,Math.min(60,t)),this._fov!==t&&(this._unmodified=!1,this._fov=t/180*Math.PI,this._calcMatrices())},Nr.zoom.get=function(){return this._zoom},Nr.zoom.set=function(t){var e=Math.min(Math.max(t,this.minZoom),this.maxZoom);this._zoom!==e&&(this._unmodified=!1,this._zoom=e,this.scale=this.zoomScale(e),this.tileZoom=Math.floor(e),this.zoomFraction=e-this.tileZoom,this._constrain(),this._calcMatrices())},Nr.center.get=function(){return this._center},Nr.center.set=function(t){t.lat===this._center.lat&&t.lng===this._center.lng||(this._unmodified=!1,this._center=t,this._constrain(),this._calcMatrices())},Br.prototype.coveringZoomLevel=function(t){return(t.roundZoom?Math.round:Math.floor)(this.zoom+this.scaleZoom(this.tileSize/t.tileSize))},Br.prototype.getVisibleUnwrappedCoordinates=function(e){var r=this.pointCoordinate(new t.default$1(0,0),0),n=this.pointCoordinate(new t.default$1(this.width,0),0),i=Math.floor(r.column),a=Math.floor(n.column),o=[new t.UnwrappedTileID(0,e)];if(this._renderWorldCopies)for(var s=i;s<=a;s++)0!==s&&o.push(new t.UnwrappedTileID(s,e));return o},Br.prototype.coveringTiles=function(e){var r=this.coveringZoomLevel(e),n=r;if(void 0!==e.minzoom&&re.maxzoom&&(r=e.maxzoom);var i=this.pointCoordinate(this.centerPoint,r),a=new t.default$1(i.column-.5,i.row-.5);return function(e,r,n,i){void 0===i&&(i=!0);var a=1<=0&&l<=a)for(c=r;co&&(i=o-g)}if(this.lngRange){var v=this.x,m=c.x/2;v-ml&&(n=l-m)}void 0===n&&void 0===i||(this.center=this.unproject(new t.default$1(void 0!==n?n:this.x,void 0!==i?i:this.y))),this._unmodified=u,this._constraining=!1}},Br.prototype._calcMatrices=function(){if(this.height){this.cameraToCenterDistance=.5/Math.tan(this._fov/2)*this.height;var t=this._fov/2,e=Math.PI/2+this._pitch,r=Math.sin(t)*this.cameraToCenterDistance/Math.sin(Math.PI-e-t),n=this.x,i=this.y,a=1.01*(Math.cos(Math.PI/2-this._pitch)*r+this.cameraToCenterDistance),o=new Float64Array(16);Rr.perspective(o,this._fov,this.width/this.height,1,a),Rr.scale(o,o,[1,-1,1]),Rr.translate(o,o,[0,0,-this.cameraToCenterDistance]),Rr.rotateX(o,o,this._pitch),Rr.rotateZ(o,o,this.angle),Rr.translate(o,o,[-n,-i,0]);var s=this.worldSize/(2*Math.PI*6378137*Math.abs(Math.cos(this.center.lat*(Math.PI/180))));Rr.scale(o,o,[1,1,s,1]),this.projMatrix=o;var l=this.width%2/2,c=this.height%2/2,u=Math.cos(this.angle),h=Math.sin(this.angle),f=n-Math.round(n)+u*l+h*c,p=i-Math.round(i)+u*c+h*l,d=new Float64Array(o);if(Rr.translate(d,d,[f>.5?f-1:f,p>.5?p-1:p,0]),this.alignedProjMatrix=d,o=Rr.create(),Rr.scale(o,o,[this.width/2,-this.height/2,1]),Rr.translate(o,o,[1,-1,0]),this.pixelMatrix=Rr.multiply(new Float64Array(16),o,this.projMatrix),!(o=Rr.invert(new Float64Array(16),this.pixelMatrix)))throw new Error("failed to invert matrix");this.pixelMatrixInverse=o,this._posMatrixCache={},this._alignedPosMatrixCache={}}},Br.prototype.maxPitchScaleFactor=function(){if(!this.pixelMatrixInverse)return 1;var e=this.pointCoordinate(new t.default$1(0,0)).zoomTo(this.zoom),r=[e.column*this.tileSize,e.row*this.tileSize,0,1];return Pr.transformMat4(r,r,this.pixelMatrix)[3]/this.cameraToCenterDistance},Object.defineProperties(Br.prototype,Nr);var jr=function(){var e,r,n,i;t.bindAll(["_onHashChange","_updateHash"],this),this._updateHash=(e=this._updateHashUnthrottled.bind(this),300,r=!1,n=0,i=function(){n=0,r&&(e(),n=setTimeout(i,300),r=!1)},function(){return r=!0,n||i(),n})};jr.prototype.addTo=function(e){return this._map=e,t.default.addEventListener("hashchange",this._onHashChange,!1),this._map.on("moveend",this._updateHash),this},jr.prototype.remove=function(){return t.default.removeEventListener("hashchange",this._onHashChange,!1),this._map.off("moveend",this._updateHash),clearTimeout(this._updateHash()),delete this._map,this},jr.prototype.getHashString=function(t){var e=this._map.getCenter(),r=Math.round(100*this._map.getZoom())/100,n=Math.ceil((r*Math.LN2+Math.log(512/360/.5))/Math.LN10),i=Math.pow(10,n),a=Math.round(e.lng*i)/i,o=Math.round(e.lat*i)/i,s=this._map.getBearing(),l=this._map.getPitch(),c="";return c+=t?"#/"+a+"/"+o+"/"+r:"#"+r+"/"+o+"/"+a,(s||l)&&(c+="/"+Math.round(10*s)/10),l&&(c+="/"+Math.round(l)),c},jr.prototype._onHashChange=function(){var e=t.default.location.hash.replace("#","").split("/");return e.length>=3&&(this._map.jumpTo({center:[+e[2],+e[1]],zoom:+e[0],bearing:+(e[3]||0),pitch:+(e[4]||0)}),!0)},jr.prototype._updateHashUnthrottled=function(){var e=this.getHashString();t.default.history.replaceState(t.default.history.state,"",e)};var Vr=function(e){function r(r,n,i,a){void 0===a&&(a={});var o=s.mousePos(n.getCanvasContainer(),i),l=n.unproject(o);e.call(this,r,t.extend({point:o,lngLat:l,originalEvent:i},a)),this._defaultPrevented=!1,this.target=n}e&&(r.__proto__=e),r.prototype=Object.create(e&&e.prototype),r.prototype.constructor=r;var n={defaultPrevented:{configurable:!0}};return r.prototype.preventDefault=function(){this._defaultPrevented=!0},n.defaultPrevented.get=function(){return this._defaultPrevented},Object.defineProperties(r.prototype,n),r}(t.Event),Ur=function(e){function r(r,n,i){var a=s.touchPos(n.getCanvasContainer(),i),o=a.map(function(t){return n.unproject(t)}),l=a.reduce(function(t,e,r,n){return t.add(e.div(n.length))},new t.default$1(0,0)),c=n.unproject(l);e.call(this,r,{points:a,point:l,lngLats:o,lngLat:c,originalEvent:i}),this._defaultPrevented=!1}e&&(r.__proto__=e),r.prototype=Object.create(e&&e.prototype),r.prototype.constructor=r;var n={defaultPrevented:{configurable:!0}};return r.prototype.preventDefault=function(){this._defaultPrevented=!0},n.defaultPrevented.get=function(){return this._defaultPrevented},Object.defineProperties(r.prototype,n),r}(t.Event),qr=function(t){function e(e,r,n){t.call(this,e,{originalEvent:n}),this._defaultPrevented=!1}t&&(e.__proto__=t),e.prototype=Object.create(t&&t.prototype),e.prototype.constructor=e;var r={defaultPrevented:{configurable:!0}};return e.prototype.preventDefault=function(){this._defaultPrevented=!0},r.defaultPrevented.get=function(){return this._defaultPrevented},Object.defineProperties(e.prototype,r),e}(t.Event),Hr=function(e){this._map=e,this._el=e.getCanvasContainer(),this._delta=0,t.bindAll(["_onWheel","_onTimeout","_onScrollFrame","_onScrollFinished"],this)};Hr.prototype.isEnabled=function(){return!!this._enabled},Hr.prototype.isActive=function(){return!!this._active},Hr.prototype.enable=function(t){this.isEnabled()||(this._enabled=!0,this._aroundCenter=t&&"center"===t.around)},Hr.prototype.disable=function(){this.isEnabled()&&(this._enabled=!1)},Hr.prototype.onWheel=function(e){if(this.isEnabled()){var r=e.deltaMode===t.default.WheelEvent.DOM_DELTA_LINE?40*e.deltaY:e.deltaY,n=a.now(),i=n-(this._lastWheelEventTime||0);this._lastWheelEventTime=n,0!==r&&r%4.000244140625==0?this._type="wheel":0!==r&&Math.abs(r)<4?this._type="trackpad":i>400?(this._type=null,this._lastValue=r,this._timeout=setTimeout(this._onTimeout,40,e)):this._type||(this._type=Math.abs(i*r)<200?"trackpad":"wheel",this._timeout&&(clearTimeout(this._timeout),this._timeout=null,r+=this._lastValue)),e.shiftKey&&r&&(r/=4),this._type&&(this._lastWheelEvent=e,this._delta-=r,this.isActive()||this._start(e)),e.preventDefault()}},Hr.prototype._onTimeout=function(t){this._type="wheel",this._delta-=this._lastValue,this.isActive()||this._start(t)},Hr.prototype._start=function(e){if(this._delta){this._frameId&&(this._map._cancelRenderFrame(this._frameId),this._frameId=null),this._active=!0,this._map.fire(new t.Event("movestart",{originalEvent:e})),this._map.fire(new t.Event("zoomstart",{originalEvent:e})),this._finishTimeout&&clearTimeout(this._finishTimeout);var r=s.mousePos(this._el,e);this._around=G.convert(this._aroundCenter?this._map.getCenter():this._map.unproject(r)),this._aroundPoint=this._map.transform.locationPoint(this._around),this._frameId||(this._frameId=this._map._requestRenderFrame(this._onScrollFrame))}},Hr.prototype._onScrollFrame=function(){var e=this;if(this._frameId=null,this.isActive()){var r=this._map.transform;if(0!==this._delta){var n="wheel"===this._type&&Math.abs(this._delta)>4.000244140625?1/450:.01,i=2/(1+Math.exp(-Math.abs(this._delta*n)));this._delta<0&&0!==i&&(i=1/i);var o="number"==typeof this._targetZoom?r.zoomScale(this._targetZoom):r.scale;this._targetZoom=Math.min(r.maxZoom,Math.max(r.minZoom,r.scaleZoom(o*i))),"wheel"===this._type&&(this._startZoom=r.zoom,this._easing=this._smoothOutEasing(200)),this._delta=0}var s=!1;if("wheel"===this._type){var l=Math.min((a.now()-this._lastWheelEventTime)/200,1),c=this._easing(l);r.zoom=t.number(this._startZoom,this._targetZoom,c),l<1?this._frameId||(this._frameId=this._map._requestRenderFrame(this._onScrollFrame)):s=!0}else r.zoom=this._targetZoom,s=!0;r.setLocationAtPoint(this._around,this._aroundPoint),this._map.fire(new t.Event("move",{originalEvent:this._lastWheelEvent})),this._map.fire(new t.Event("zoom",{originalEvent:this._lastWheelEvent})),s&&(this._active=!1,this._finishTimeout=setTimeout(function(){e._map.fire(new t.Event("zoomend",{originalEvent:e._lastWheelEvent})),e._map.fire(new t.Event("moveend",{originalEvent:e._lastWheelEvent})),delete e._targetZoom},200))}},Hr.prototype._smoothOutEasing=function(e){var r=t.ease;if(this._prevEase){var n=this._prevEase,i=(a.now()-n.start)/n.duration,o=n.easing(i+.01)-n.easing(i),s=.27/Math.sqrt(o*o+1e-4)*.01,l=Math.sqrt(.0729-s*s);r=t.bezier(s,l,.25,1)}return this._prevEase={start:a.now(),duration:e,easing:r},r};var Gr=function(e){this._map=e,this._el=e.getCanvasContainer(),this._container=e.getContainer(),t.bindAll(["_onMouseMove","_onMouseUp","_onKeyDown"],this)};Gr.prototype.isEnabled=function(){return!!this._enabled},Gr.prototype.isActive=function(){return!!this._active},Gr.prototype.enable=function(){this.isEnabled()||(this._enabled=!0)},Gr.prototype.disable=function(){this.isEnabled()&&(this._enabled=!1)},Gr.prototype.onMouseDown=function(e){this.isEnabled()&&e.shiftKey&&0===e.button&&(t.default.document.addEventListener("mousemove",this._onMouseMove,!1),t.default.document.addEventListener("keydown",this._onKeyDown,!1),t.default.document.addEventListener("mouseup",this._onMouseUp,!1),s.disableDrag(),this._startPos=s.mousePos(this._el,e),this._active=!0)},Gr.prototype._onMouseMove=function(t){var e=this._startPos,r=s.mousePos(this._el,t);this._box||(this._box=s.create("div","mapboxgl-boxzoom",this._container),this._container.classList.add("mapboxgl-crosshair"),this._fireEvent("boxzoomstart",t));var n=Math.min(e.x,r.x),i=Math.max(e.x,r.x),a=Math.min(e.y,r.y),o=Math.max(e.y,r.y);s.setTransform(this._box,"translate("+n+"px,"+a+"px)"),this._box.style.width=i-n+"px",this._box.style.height=o-a+"px"},Gr.prototype._onMouseUp=function(e){if(0===e.button){var r=this._startPos,n=s.mousePos(this._el,e),i=(new Y).extend(this._map.unproject(r)).extend(this._map.unproject(n));this._finish(),s.suppressClick(),r.x===n.x&&r.y===n.y?this._fireEvent("boxzoomcancel",e):this._map.fitBounds(i,{linear:!0}).fire(new t.Event("boxzoomend",{originalEvent:e,boxZoomBounds:i}))}},Gr.prototype._onKeyDown=function(t){27===t.keyCode&&(this._finish(),this._fireEvent("boxzoomcancel",t))},Gr.prototype._finish=function(){this._active=!1,t.default.document.removeEventListener("mousemove",this._onMouseMove,!1),t.default.document.removeEventListener("keydown",this._onKeyDown,!1),t.default.document.removeEventListener("mouseup",this._onMouseUp,!1),this._container.classList.remove("mapboxgl-crosshair"),this._box&&(s.remove(this._box),this._box=null),s.enableDrag()},Gr.prototype._fireEvent=function(e,r){return this._map.fire(new t.Event(e,{originalEvent:r}))};var Yr=t.bezier(0,0,.25,1),Wr=function(e,r){this._map=e,this._el=r.element||e.getCanvasContainer(),this._state="disabled",this._button=r.button||"right",this._bearingSnap=r.bearingSnap||0,this._pitchWithRotate=!1!==r.pitchWithRotate,t.bindAll(["_onMouseMove","_onMouseUp","_onBlur","_onDragFrame"],this)};Wr.prototype.isEnabled=function(){return"disabled"!==this._state},Wr.prototype.isActive=function(){return"active"===this._state},Wr.prototype.enable=function(){this.isEnabled()||(this._state="enabled")},Wr.prototype.disable=function(){if(this.isEnabled())switch(this._state){case"active":this._state="disabled",this._unbind(),this._deactivate(),this._fireEvent("rotateend"),this._pitchWithRotate&&this._fireEvent("pitchend"),this._fireEvent("moveend");break;case"pending":this._state="disabled",this._unbind();break;default:this._state="disabled"}},Wr.prototype.onMouseDown=function(e){if("enabled"===this._state){if("right"===this._button){if(this._eventButton=s.mouseButton(e),this._eventButton!==(e.ctrlKey?0:2))return}else{if(e.ctrlKey||0!==s.mouseButton(e))return;this._eventButton=0}s.disableDrag(),t.default.document.addEventListener("mousemove",this._onMouseMove,{capture:!0}),t.default.document.addEventListener("mouseup",this._onMouseUp),t.default.addEventListener("blur",this._onBlur),this._state="pending",this._inertia=[[a.now(),this._map.getBearing()]],this._previousPos=s.mousePos(this._el,e),this._center=this._map.transform.centerPoint,e.preventDefault()}},Wr.prototype._onMouseMove=function(t){this._lastMoveEvent=t,this._pos=s.mousePos(this._el,t),"pending"===this._state&&(this._state="active",this._fireEvent("rotatestart",t),this._fireEvent("movestart",t),this._pitchWithRotate&&this._fireEvent("pitchstart",t)),this._frameId||(this._frameId=this._map._requestRenderFrame(this._onDragFrame))},Wr.prototype._onDragFrame=function(){this._frameId=null;var t=this._lastMoveEvent;if(t){var e=this._map.transform,r=this._previousPos,n=this._pos,i=.8*(r.x-n.x),o=-.5*(r.y-n.y),s=e.bearing-i,l=e.pitch-o,c=this._inertia,u=c[c.length-1];this._drainInertiaBuffer(),c.push([a.now(),this._map._normalizeBearing(s,u[1])]),e.bearing=s,this._pitchWithRotate&&(this._fireEvent("pitch",t),e.pitch=l),this._fireEvent("rotate",t),this._fireEvent("move",t),delete this._lastMoveEvent,this._previousPos=this._pos}},Wr.prototype._onMouseUp=function(t){if(s.mouseButton(t)===this._eventButton)switch(this._state){case"active":this._state="enabled",s.suppressClick(),this._unbind(),this._deactivate(),this._inertialRotate(t);break;case"pending":this._state="enabled",this._unbind()}},Wr.prototype._onBlur=function(t){switch(this._state){case"active":this._state="enabled",this._unbind(),this._deactivate(),this._fireEvent("rotateend",t),this._pitchWithRotate&&this._fireEvent("pitchend",t),this._fireEvent("moveend",t);break;case"pending":this._state="enabled",this._unbind()}},Wr.prototype._unbind=function(){t.default.document.removeEventListener("mousemove",this._onMouseMove,{capture:!0}),t.default.document.removeEventListener("mouseup",this._onMouseUp),t.default.removeEventListener("blur",this._onBlur),s.enableDrag()},Wr.prototype._deactivate=function(){this._frameId&&(this._map._cancelRenderFrame(this._frameId),this._frameId=null),delete this._lastMoveEvent,delete this._previousPos},Wr.prototype._inertialRotate=function(t){var e=this;this._fireEvent("rotateend",t),this._drainInertiaBuffer();var r=this._map,n=r.getBearing(),i=this._inertia,a=function(){Math.abs(n)180&&(p=180);var d=p/180;c+=h*p*(d/2),Math.abs(r._normalizeBearing(c,0))0&&e-t[0][0]>160;)t.shift()};var Xr=t.bezier(0,0,.3,1),Zr=function(e){this._map=e,this._el=e.getCanvasContainer(),this._state="disabled",t.bindAll(["_onMove","_onMouseUp","_onTouchEnd","_onBlur","_onDragFrame"],this)};Zr.prototype.isEnabled=function(){return"disabled"!==this._state},Zr.prototype.isActive=function(){return"active"===this._state},Zr.prototype.enable=function(){this.isEnabled()||(this._el.classList.add("mapboxgl-touch-drag-pan"),this._state="enabled")},Zr.prototype.disable=function(){if(this.isEnabled())switch(this._el.classList.remove("mapboxgl-touch-drag-pan"),this._state){case"active":this._state="disabled",this._unbind(),this._deactivate(),this._fireEvent("dragend"),this._fireEvent("moveend");break;case"pending":this._state="disabled",this._unbind();break;default:this._state="disabled"}},Zr.prototype.onMouseDown=function(e){"enabled"===this._state&&(e.ctrlKey||0!==s.mouseButton(e)||(s.addEventListener(t.default.document,"mousemove",this._onMove,{capture:!0}),s.addEventListener(t.default.document,"mouseup",this._onMouseUp),this._start(e)))},Zr.prototype.onTouchStart=function(e){"enabled"===this._state&&(e.touches.length>1||(s.addEventListener(t.default.document,"touchmove",this._onMove,{capture:!0,passive:!1}),s.addEventListener(t.default.document,"touchend",this._onTouchEnd),this._start(e)))},Zr.prototype._start=function(e){t.default.addEventListener("blur",this._onBlur),this._state="pending",this._previousPos=s.mousePos(this._el,e),this._inertia=[[a.now(),this._previousPos]]},Zr.prototype._onMove=function(t){this._lastMoveEvent=t,t.preventDefault(),this._pos=s.mousePos(this._el,t),this._drainInertiaBuffer(),this._inertia.push([a.now(),this._pos]),"pending"===this._state&&(this._state="active",this._fireEvent("dragstart",t),this._fireEvent("movestart",t)),this._frameId||(this._frameId=this._map._requestRenderFrame(this._onDragFrame))},Zr.prototype._onDragFrame=function(){this._frameId=null;var t=this._lastMoveEvent;if(t){var e=this._map.transform;e.setLocationAtPoint(e.pointLocation(this._previousPos),this._pos),this._fireEvent("drag",t),this._fireEvent("move",t),this._previousPos=this._pos,delete this._lastMoveEvent}},Zr.prototype._onMouseUp=function(t){if(0===s.mouseButton(t))switch(this._state){case"active":this._state="enabled",s.suppressClick(),this._unbind(),this._deactivate(),this._inertialPan(t);break;case"pending":this._state="enabled",this._unbind()}},Zr.prototype._onTouchEnd=function(t){switch(this._state){case"active":this._state="enabled",this._unbind(),this._deactivate(),this._inertialPan(t);break;case"pending":this._state="enabled",this._unbind()}},Zr.prototype._onBlur=function(t){switch(this._state){case"active":this._state="enabled",this._unbind(),this._deactivate(),this._fireEvent("dragend",t),this._fireEvent("moveend",t);break;case"pending":this._state="enabled",this._unbind()}},Zr.prototype._unbind=function(){s.removeEventListener(t.default.document,"touchmove",this._onMove,{capture:!0,passive:!1}),s.removeEventListener(t.default.document,"touchend",this._onTouchEnd),s.removeEventListener(t.default.document,"mousemove",this._onMove,{capture:!0}),s.removeEventListener(t.default.document,"mouseup",this._onMouseUp),s.removeEventListener(t.default,"blur",this._onBlur)},Zr.prototype._deactivate=function(){this._frameId&&(this._map._cancelRenderFrame(this._frameId),this._frameId=null),delete this._lastMoveEvent,delete this._previousPos,delete this._pos},Zr.prototype._inertialPan=function(t){this._fireEvent("dragend",t),this._drainInertiaBuffer();var e=this._inertia;if(e.length<2)this._fireEvent("moveend",t);else{var r=e[e.length-1],n=e[0],i=r[1].sub(n[1]),a=(r[0]-n[0])/1e3;if(0===a||r[1].equals(n[1]))this._fireEvent("moveend",t);else{var o=i.mult(.3/a),s=o.mag();s>1400&&(s=1400,o._unit()._mult(s));var l=s/750,c=o.mult(-l/2);this._map.panBy(c,{duration:1e3*l,easing:Xr,noMoveStart:!0},{originalEvent:t})}}},Zr.prototype._fireEvent=function(e,r){return this._map.fire(new t.Event(e,r?{originalEvent:r}:{}))},Zr.prototype._drainInertiaBuffer=function(){for(var t=this._inertia,e=a.now();t.length>0&&e-t[0][0]>160;)t.shift()};var $r=function(e){this._map=e,this._el=e.getCanvasContainer(),t.bindAll(["_onKeyDown"],this)};function Jr(t){return t*(2-t)}$r.prototype.isEnabled=function(){return!!this._enabled},$r.prototype.enable=function(){this.isEnabled()||(this._el.addEventListener("keydown",this._onKeyDown,!1),this._enabled=!0)},$r.prototype.disable=function(){this.isEnabled()&&(this._el.removeEventListener("keydown",this._onKeyDown),this._enabled=!1)},$r.prototype._onKeyDown=function(t){if(!(t.altKey||t.ctrlKey||t.metaKey)){var e=0,r=0,n=0,i=0,a=0;switch(t.keyCode){case 61:case 107:case 171:case 187:e=1;break;case 189:case 109:case 173:e=-1;break;case 37:t.shiftKey?r=-1:(t.preventDefault(),i=-1);break;case 39:t.shiftKey?r=1:(t.preventDefault(),i=1);break;case 38:t.shiftKey?n=1:(t.preventDefault(),a=-1);break;case 40:t.shiftKey?n=-1:(a=1,t.preventDefault());break;default:return}var o=this._map,s=o.getZoom(),l={duration:300,delayEndEvents:500,easing:Jr,zoom:e?Math.round(s)+e*(t.shiftKey?2:1):s,bearing:o.getBearing()+15*r,pitch:o.getPitch()+10*n,offset:[100*-i,100*-a],center:o.getCenter()};o.easeTo(l,{originalEvent:t})}};var Kr=function(e){this._map=e,t.bindAll(["_onDblClick","_onZoomEnd"],this)};Kr.prototype.isEnabled=function(){return!!this._enabled},Kr.prototype.isActive=function(){return!!this._active},Kr.prototype.enable=function(){this.isEnabled()||(this._enabled=!0)},Kr.prototype.disable=function(){this.isEnabled()&&(this._enabled=!1)},Kr.prototype.onTouchStart=function(t){var e=this;this.isEnabled()&&(t.points.length>1||(this._tapped?(clearTimeout(this._tapped),this._tapped=null,this._zoom(t)):this._tapped=setTimeout(function(){e._tapped=null},300)))},Kr.prototype.onDblClick=function(t){this.isEnabled()&&(t.originalEvent.preventDefault(),this._zoom(t))},Kr.prototype._zoom=function(t){this._active=!0,this._map.on("zoomend",this._onZoomEnd),this._map.zoomTo(this._map.getZoom()+(t.originalEvent.shiftKey?-1:1),{around:t.lngLat},t)},Kr.prototype._onZoomEnd=function(){this._active=!1,this._map.off("zoomend",this._onZoomEnd)};var Qr=t.bezier(0,0,.15,1),tn=function(e){this._map=e,this._el=e.getCanvasContainer(),t.bindAll(["_onMove","_onEnd","_onTouchFrame"],this)};tn.prototype.isEnabled=function(){return!!this._enabled},tn.prototype.enable=function(t){this.isEnabled()||(this._el.classList.add("mapboxgl-touch-zoom-rotate"),this._enabled=!0,this._aroundCenter=!!t&&"center"===t.around)},tn.prototype.disable=function(){this.isEnabled()&&(this._el.classList.remove("mapboxgl-touch-zoom-rotate"),this._enabled=!1)},tn.prototype.disableRotation=function(){this._rotationDisabled=!0},tn.prototype.enableRotation=function(){this._rotationDisabled=!1},tn.prototype.onStart=function(e){if(this.isEnabled()&&2===e.touches.length){var r=s.mousePos(this._el,e.touches[0]),n=s.mousePos(this._el,e.touches[1]);this._startVec=r.sub(n),this._gestureIntent=void 0,this._inertia=[],s.addEventListener(t.default.document,"touchmove",this._onMove,{passive:!1}),s.addEventListener(t.default.document,"touchend",this._onEnd)}},tn.prototype._getTouchEventData=function(t){var e=s.mousePos(this._el,t.touches[0]),r=s.mousePos(this._el,t.touches[1]),n=e.sub(r);return{vec:n,center:e.add(r).div(2),scale:n.mag()/this._startVec.mag(),bearing:this._rotationDisabled?0:180*n.angleWith(this._startVec)/Math.PI}},tn.prototype._onMove=function(e){if(2===e.touches.length){var r=this._getTouchEventData(e),n=r.vec,i=r.scale,a=r.bearing;if(!this._gestureIntent){var o=Math.abs(1-i)>.15;Math.abs(a)>10?this._gestureIntent="rotate":o&&(this._gestureIntent="zoom"),this._gestureIntent&&(this._map.fire(new t.Event(this._gestureIntent+"start",{originalEvent:e})),this._map.fire(new t.Event("movestart",{originalEvent:e})),this._startVec=n)}this._lastTouchEvent=e,this._frameId||(this._frameId=this._map._requestRenderFrame(this._onTouchFrame)),e.preventDefault()}},tn.prototype._onTouchFrame=function(){this._frameId=null;var e=this._gestureIntent;if(e){var r=this._map.transform;this._startScale||(this._startScale=r.scale,this._startBearing=r.bearing);var n=this._getTouchEventData(this._lastTouchEvent),i=n.center,o=n.bearing,s=n.scale,l=r.pointLocation(i),c=r.locationPoint(l);"rotate"===e&&(r.bearing=this._startBearing+o),r.zoom=r.scaleZoom(this._startScale*s),r.setLocationAtPoint(l,c),this._map.fire(new t.Event(e,{originalEvent:this._lastTouchEvent})),this._map.fire(new t.Event("move",{originalEvent:this._lastTouchEvent})),this._drainInertiaBuffer(),this._inertia.push([a.now(),s,i])}},tn.prototype._onEnd=function(e){s.removeEventListener(t.default.document,"touchmove",this._onMove,{passive:!1}),s.removeEventListener(t.default.document,"touchend",this._onEnd);var r=this._gestureIntent,n=this._startScale;if(this._frameId&&(this._map._cancelRenderFrame(this._frameId),this._frameId=null),delete this._gestureIntent,delete this._startScale,delete this._startBearing,delete this._lastTouchEvent,r){this._map.fire(new t.Event(r+"end",{originalEvent:e})),this._drainInertiaBuffer();var i=this._inertia,a=this._map;if(i.length<2)a.snapToNorth({},{originalEvent:e});else{var o=i[i.length-1],l=i[0],c=a.transform.scaleZoom(n*o[1]),u=a.transform.scaleZoom(n*l[1]),h=c-u,f=(o[0]-l[0])/1e3,p=o[2];if(0!==f&&c!==u){var d=.15*h/f;Math.abs(d)>2.5&&(d=d>0?2.5:-2.5);var g=1e3*Math.abs(d/(12*.15)),v=c+d*g/2e3;v<0&&(v=0),a.easeTo({zoom:v,duration:g,easing:Qr,around:this._aroundCenter?a.getCenter():a.unproject(p),noMoveStart:!0},{originalEvent:e})}else a.snapToNorth({},{originalEvent:e})}}},tn.prototype._drainInertiaBuffer=function(){for(var t=this._inertia,e=a.now();t.length>2&&e-t[0][0]>160;)t.shift()};var en={scrollZoom:Hr,boxZoom:Gr,dragRotate:Wr,dragPan:Zr,keyboard:$r,doubleClickZoom:Kr,touchZoomRotate:tn},rn=function(e){function r(r,n){e.call(this),this._moving=!1,this._zooming=!1,this.transform=r,this._bearingSnap=n.bearingSnap,t.bindAll(["_renderFrameCallback"],this)}return e&&(r.__proto__=e),r.prototype=Object.create(e&&e.prototype),r.prototype.constructor=r,r.prototype.getCenter=function(){return this.transform.center},r.prototype.setCenter=function(t,e){return this.jumpTo({center:t},e)},r.prototype.panBy=function(e,r,n){return e=t.default$1.convert(e).mult(-1),this.panTo(this.transform.center,t.extend({offset:e},r),n)},r.prototype.panTo=function(e,r,n){return this.easeTo(t.extend({center:e},r),n)},r.prototype.getZoom=function(){return this.transform.zoom},r.prototype.setZoom=function(t,e){return this.jumpTo({zoom:t},e),this},r.prototype.zoomTo=function(e,r,n){return this.easeTo(t.extend({zoom:e},r),n)},r.prototype.zoomIn=function(t,e){return this.zoomTo(this.getZoom()+1,t,e),this},r.prototype.zoomOut=function(t,e){return this.zoomTo(this.getZoom()-1,t,e),this},r.prototype.getBearing=function(){return this.transform.bearing},r.prototype.setBearing=function(t,e){return this.jumpTo({bearing:t},e),this},r.prototype.rotateTo=function(e,r,n){return this.easeTo(t.extend({bearing:e},r),n)},r.prototype.resetNorth=function(e,r){return this.rotateTo(0,t.extend({duration:1e3},e),r),this},r.prototype.snapToNorth=function(t,e){return Math.abs(this.getBearing())e?1:0}),["bottom","left","right","top"]))return t.warnOnce("options.padding must be a positive number, or an Object with keys 'bottom', 'left', 'right', 'top'"),this;e=Y.convert(e);var a=[(r.padding.left-r.padding.right)/2,(r.padding.top-r.padding.bottom)/2],o=Math.min(r.padding.right,r.padding.left),s=Math.min(r.padding.top,r.padding.bottom);r.offset=[r.offset[0]+a[0],r.offset[1]+a[1]];var l=t.default$1.convert(r.offset),c=this.transform,u=c.project(e.getNorthWest()),h=c.project(e.getSouthEast()),f=h.sub(u),p=(c.width-2*o-2*Math.abs(l.x))/f.x,d=(c.height-2*s-2*Math.abs(l.y))/f.y;return d<0||p<0?(t.warnOnce("Map cannot fit within canvas with the given bounds, padding, and/or offset."),this):(r.center=c.unproject(u.add(h).div(2)),r.zoom=Math.min(c.scaleZoom(c.scale*Math.min(p,d)),r.maxZoom),r.bearing=0,r.linear?this.easeTo(r,n):this.flyTo(r,n))},r.prototype.jumpTo=function(e,r){this.stop();var n=this.transform,i=!1,a=!1,o=!1;return"zoom"in e&&n.zoom!==+e.zoom&&(i=!0,n.zoom=+e.zoom),void 0!==e.center&&(n.center=G.convert(e.center)),"bearing"in e&&n.bearing!==+e.bearing&&(a=!0,n.bearing=+e.bearing),"pitch"in e&&n.pitch!==+e.pitch&&(o=!0,n.pitch=+e.pitch),this.fire(new t.Event("movestart",r)).fire(new t.Event("move",r)),i&&this.fire(new t.Event("zoomstart",r)).fire(new t.Event("zoom",r)).fire(new t.Event("zoomend",r)),a&&this.fire(new t.Event("rotatestart",r)).fire(new t.Event("rotate",r)).fire(new t.Event("rotateend",r)),o&&this.fire(new t.Event("pitchstart",r)).fire(new t.Event("pitch",r)).fire(new t.Event("pitchend",r)),this.fire(new t.Event("moveend",r))},r.prototype.easeTo=function(e,r){var n=this;this.stop(),!1===(e=t.extend({offset:[0,0],duration:500,easing:t.ease},e)).animate&&(e.duration=0);var i=this.transform,a=this.getZoom(),o=this.getBearing(),s=this.getPitch(),l="zoom"in e?+e.zoom:a,c="bearing"in e?this._normalizeBearing(e.bearing,o):o,u="pitch"in e?+e.pitch:s,h=i.centerPoint.add(t.default$1.convert(e.offset)),f=i.pointLocation(h),p=G.convert(e.center||f);this._normalizeCenter(p);var d,g,v=i.project(f),m=i.project(p).sub(v),y=i.zoomScale(l-a);return e.around&&(d=G.convert(e.around),g=i.locationPoint(d)),this._zooming=l!==a,this._rotating=o!==c,this._pitching=u!==s,this._prepareEase(r,e.noMoveStart),clearTimeout(this._easeEndTimeoutID),this._ease(function(e){if(n._zooming&&(i.zoom=t.number(a,l,e)),n._rotating&&(i.bearing=t.number(o,c,e)),n._pitching&&(i.pitch=t.number(s,u,e)),d)i.setLocationAtPoint(d,g);else{var f=i.zoomScale(i.zoom-a),p=l>a?Math.min(2,y):Math.max(.5,y),x=Math.pow(p,1-e),b=i.unproject(v.add(m.mult(e*x)).mult(f));i.setLocationAtPoint(i.renderWorldCopies?b.wrap():b,h)}n._fireMoveEvents(r)},function(){e.delayEndEvents?n._easeEndTimeoutID=setTimeout(function(){return n._afterEase(r)},e.delayEndEvents):n._afterEase(r)},e),this},r.prototype._prepareEase=function(e,r){this._moving=!0,r||this.fire(new t.Event("movestart",e)),this._zooming&&this.fire(new t.Event("zoomstart",e)),this._rotating&&this.fire(new t.Event("rotatestart",e)),this._pitching&&this.fire(new t.Event("pitchstart",e))},r.prototype._fireMoveEvents=function(e){this.fire(new t.Event("move",e)),this._zooming&&this.fire(new t.Event("zoom",e)),this._rotating&&this.fire(new t.Event("rotate",e)),this._pitching&&this.fire(new t.Event("pitch",e))},r.prototype._afterEase=function(e){var r=this._zooming,n=this._rotating,i=this._pitching;this._moving=!1,this._zooming=!1,this._rotating=!1,this._pitching=!1,r&&this.fire(new t.Event("zoomend",e)),n&&this.fire(new t.Event("rotateend",e)),i&&this.fire(new t.Event("pitchend",e)),this.fire(new t.Event("moveend",e))},r.prototype.flyTo=function(e,r){var n=this;this.stop(),e=t.extend({offset:[0,0],speed:1.2,curve:1.42,easing:t.ease},e);var i=this.transform,a=this.getZoom(),o=this.getBearing(),s=this.getPitch(),l="zoom"in e?t.clamp(+e.zoom,i.minZoom,i.maxZoom):a,c="bearing"in e?this._normalizeBearing(e.bearing,o):o,u="pitch"in e?+e.pitch:s,h=i.zoomScale(l-a),f=i.centerPoint.add(t.default$1.convert(e.offset)),p=i.pointLocation(f),d=G.convert(e.center||p);this._normalizeCenter(d);var g=i.project(p),v=i.project(d).sub(g),m=e.curve,y=Math.max(i.width,i.height),x=y/h,b=v.mag();if("minZoom"in e){var _=t.clamp(Math.min(e.minZoom,a,l),i.minZoom,i.maxZoom),w=y/i.zoomScale(_-a);m=Math.sqrt(w/b*2)}var k=m*m;function A(t){var e=(x*x-y*y+(t?-1:1)*k*k*b*b)/(2*(t?x:y)*k*b);return Math.log(Math.sqrt(e*e+1)-e)}function T(t){return(Math.exp(t)-Math.exp(-t))/2}function M(t){return(Math.exp(t)+Math.exp(-t))/2}var S=A(0),E=function(t){return M(S)/M(S+m*t)},C=function(t){return y*((M(S)*(T(e=S+m*t)/M(e))-T(S))/k)/b;var e},L=(A(1)-S)/m;if(Math.abs(b)<1e-6||!isFinite(L)){if(Math.abs(y-x)<1e-6)return this.easeTo(e,r);var z=xe.maxDuration&&(e.duration=0),this._zooming=!0,this._rotating=o!==c,this._pitching=u!==s,this._prepareEase(r,!1),this._ease(function(e){var l=e*L,h=1/E(l);i.zoom=a+i.scaleZoom(h),n._rotating&&(i.bearing=t.number(o,c,e)),n._pitching&&(i.pitch=t.number(s,u,e));var p=i.unproject(g.add(v.mult(C(l))).mult(h));i.setLocationAtPoint(i.renderWorldCopies?p.wrap():p,f),n._fireMoveEvents(r)},function(){return n._afterEase(r)},e),this},r.prototype.isEasing=function(){return!!this._easeFrameId},r.prototype.stop=function(){if(this._easeFrameId&&(this._cancelRenderFrame(this._easeFrameId),delete this._easeFrameId,delete this._onEaseFrame),this._onEaseEnd){var t=this._onEaseEnd;delete this._onEaseEnd,t.call(this)}return this},r.prototype._ease=function(t,e,r){!1===r.animate||0===r.duration?(t(1),e()):(this._easeStart=a.now(),this._easeOptions=r,this._onEaseFrame=t,this._onEaseEnd=e,this._easeFrameId=this._requestRenderFrame(this._renderFrameCallback))},r.prototype._renderFrameCallback=function(){var t=Math.min((a.now()-this._easeStart)/this._easeOptions.duration,1);this._onEaseFrame(this._easeOptions.easing(t)),t<1?this._easeFrameId=this._requestRenderFrame(this._renderFrameCallback):this.stop()},r.prototype._normalizeBearing=function(e,r){e=t.wrap(e,-180,180);var n=Math.abs(e-r);return Math.abs(e-360-r)180?-360:r<-180?360:0}},r}(t.Evented),nn=function(e){void 0===e&&(e={}),this.options=e,t.bindAll(["_updateEditLink","_updateData","_updateCompact"],this)};nn.prototype.getDefaultPosition=function(){return"bottom-right"},nn.prototype.onAdd=function(t){var e=this.options&&this.options.compact;return this._map=t,this._container=s.create("div","mapboxgl-ctrl mapboxgl-ctrl-attrib"),e&&this._container.classList.add("mapboxgl-compact"),this._updateAttributions(),this._updateEditLink(),this._map.on("sourcedata",this._updateData),this._map.on("moveend",this._updateEditLink),void 0===e&&(this._map.on("resize",this._updateCompact),this._updateCompact()),this._container},nn.prototype.onRemove=function(){s.remove(this._container),this._map.off("sourcedata",this._updateData),this._map.off("moveend",this._updateEditLink),this._map.off("resize",this._updateCompact),this._map=void 0},nn.prototype._updateEditLink=function(){var t=this._editLink;t||(t=this._editLink=this._container.querySelector(".mapbox-improve-map"));var e=[{key:"owner",value:this.styleOwner},{key:"id",value:this.styleId},{key:"access_token",value:v.ACCESS_TOKEN}];if(t){var r=e.reduce(function(t,r,n){return r.value&&(t+=r.key+"="+r.value+(n=0)return!1;return!0})).length?(this._container.innerHTML=t.join(" | "),this._container.classList.remove("mapboxgl-attrib-empty")):this._container.classList.add("mapboxgl-attrib-empty"),this._editLink=null}},nn.prototype._updateCompact=function(){this._map.getCanvasContainer().offsetWidth<=640?this._container.classList.add("mapboxgl-compact"):this._container.classList.remove("mapboxgl-compact")};var an=function(){t.bindAll(["_updateLogo"],this)};an.prototype.onAdd=function(t){this._map=t,this._container=s.create("div","mapboxgl-ctrl");var e=s.create("a","mapboxgl-ctrl-logo");return e.target="_blank",e.href="https://www.mapbox.com/",e.setAttribute("aria-label","Mapbox logo"),this._container.appendChild(e),this._container.style.display="none",this._map.on("sourcedata",this._updateLogo),this._updateLogo(),this._container},an.prototype.onRemove=function(){s.remove(this._container),this._map.off("sourcedata",this._updateLogo)},an.prototype.getDefaultPosition=function(){return"bottom-left"},an.prototype._updateLogo=function(t){t&&"metadata"!==t.sourceDataType||(this._container.style.display=this._logoRequired()?"block":"none")},an.prototype._logoRequired=function(){if(this._map.style){var t=this._map.style.sourceCaches;for(var e in t)if(t[e].getSource().mapbox_logo)return!0;return!1}};var on=function(){this._queue=[],this._id=0,this._cleared=!1,this._currentlyRunning=!1};on.prototype.add=function(t){var e=++this._id;return this._queue.push({callback:t,id:e,cancelled:!1}),e},on.prototype.remove=function(t){for(var e=this._currentlyRunning,r=0,n=e?this._queue.concat(e):this._queue;re.maxZoom)throw new Error("maxZoom must be greater than minZoom");var n=new Br(e.minZoom,e.maxZoom,e.renderWorldCopies);r.call(this,n,e),this._interactive=e.interactive,this._maxTileCacheSize=e.maxTileCacheSize,this._failIfMajorPerformanceCaveat=e.failIfMajorPerformanceCaveat,this._preserveDrawingBuffer=e.preserveDrawingBuffer,this._trackResize=e.trackResize,this._bearingSnap=e.bearingSnap,this._refreshExpiredTiles=e.refreshExpiredTiles,this._fadeDuration=e.fadeDuration,this._crossFadingFactor=1,this._collectResourceTiming=e.collectResourceTiming,this._renderTaskQueue=new on;var i=e.transformRequest;if(this._transformRequest=i?function(t,e){return i(t,e)||{url:t}}:function(t){return{url:t}},"string"==typeof e.container){var a=t.default.document.getElementById(e.container);if(!a)throw new Error("Container '"+e.container+"' not found.");this._container=a}else{if(!(e.container instanceof ln))throw new Error("Invalid type: 'container' must be a String or HTMLElement.");this._container=e.container}e.maxBounds&&this.setMaxBounds(e.maxBounds),t.bindAll(["_onWindowOnline","_onWindowResize","_contextLost","_contextRestored","_update","_render","_onData","_onDataLoading"],this),this._setupContainer(),this._setupPainter(),this.on("move",this._update.bind(this,!1)),this.on("zoom",this._update.bind(this,!0)),void 0!==t.default&&(t.default.addEventListener("online",this._onWindowOnline,!1),t.default.addEventListener("resize",this._onWindowResize,!1)),function(t,e){var r=t.getCanvasContainer(),n=null,i=!1;for(var a in en)t[a]=new en[a](t,e),e.interactive&&e[a]&&t[a].enable(e[a]);s.addEventListener(r,"mouseout",function(e){t.fire(new Vr("mouseout",t,e))}),s.addEventListener(r,"mousedown",function(r){i=!0;var n=new Vr("mousedown",t,r);t.fire(n),n.defaultPrevented||(e.interactive&&!t.doubleClickZoom.isActive()&&t.stop(),t.boxZoom.onMouseDown(r),t.boxZoom.isActive()||t.dragPan.isActive()||t.dragRotate.onMouseDown(r),t.boxZoom.isActive()||t.dragRotate.isActive()||t.dragPan.onMouseDown(r))}),s.addEventListener(r,"mouseup",function(e){var r=t.dragRotate.isActive();n&&!r&&t.fire(new Vr("contextmenu",t,n)),n=null,i=!1,t.fire(new Vr("mouseup",t,e))}),s.addEventListener(r,"mousemove",function(e){if(!t.dragPan.isActive()&&!t.dragRotate.isActive()){for(var n=e.toElement||e.target;n&&n!==r;)n=n.parentNode;n===r&&t.fire(new Vr("mousemove",t,e))}}),s.addEventListener(r,"mouseover",function(e){for(var n=e.toElement||e.target;n&&n!==r;)n=n.parentNode;n===r&&t.fire(new Vr("mouseover",t,e))}),s.addEventListener(r,"touchstart",function(r){var n=new Ur("touchstart",t,r);t.fire(n),n.defaultPrevented||(e.interactive&&t.stop(),t.boxZoom.isActive()||t.dragRotate.isActive()||t.dragPan.onTouchStart(r),t.touchZoomRotate.onStart(r),t.doubleClickZoom.onTouchStart(n))},{passive:!1}),s.addEventListener(r,"touchmove",function(e){t.fire(new Ur("touchmove",t,e))},{passive:!1}),s.addEventListener(r,"touchend",function(e){t.fire(new Ur("touchend",t,e))}),s.addEventListener(r,"touchcancel",function(e){t.fire(new Ur("touchcancel",t,e))}),s.addEventListener(r,"click",function(e){t.fire(new Vr("click",t,e))}),s.addEventListener(r,"dblclick",function(e){var r=new Vr("dblclick",t,e);t.fire(r),r.defaultPrevented||t.doubleClickZoom.onDblClick(r)}),s.addEventListener(r,"contextmenu",function(e){var r=t.dragRotate.isActive();i||r?i&&(n=e):t.fire(new Vr("contextmenu",t,e)),e.preventDefault()}),s.addEventListener(r,"wheel",function(e){var r=new qr("wheel",t,e);t.fire(r),r.defaultPrevented||t.scrollZoom.onWheel(e)},{passive:!1})}(this,e),this._hash=e.hash&&(new jr).addTo(this),this._hash&&this._hash._onHashChange()||this.jumpTo({center:e.center,zoom:e.zoom,bearing:e.bearing,pitch:e.pitch}),this.resize(),e.style&&this.setStyle(e.style,{localIdeographFontFamily:e.localIdeographFontFamily}),e.attributionControl&&this.addControl(new nn),this.addControl(new an,e.logoPosition),this.on("style.load",function(){this.transform.unmodified&&this.jumpTo(this.style.stylesheet)}),this.on("data",this._onData),this.on("dataloading",this._onDataLoading)}r&&(n.__proto__=r),n.prototype=Object.create(r&&r.prototype),n.prototype.constructor=n;var i={showTileBoundaries:{configurable:!0},showCollisionBoxes:{configurable:!0},showOverdrawInspector:{configurable:!0},repaint:{configurable:!0},vertices:{configurable:!0}};return n.prototype.addControl=function(t,e){void 0===e&&t.getDefaultPosition&&(e=t.getDefaultPosition()),void 0===e&&(e="top-right");var r=t.onAdd(this),n=this._controlPositions[e];return-1!==e.indexOf("bottom")?n.insertBefore(r,n.firstChild):n.appendChild(r),this},n.prototype.removeControl=function(t){return t.onRemove(this),this},n.prototype.resize=function(e){var r=this._containerDimensions(),n=r[0],i=r[1];return this._resizeCanvas(n,i),this.transform.resize(n,i),this.painter.resize(n,i),this.fire(new t.Event("movestart",e)).fire(new t.Event("move",e)).fire(new t.Event("resize",e)).fire(new t.Event("moveend",e))},n.prototype.getBounds=function(){var e=new Y(this.transform.pointLocation(new t.default$1(0,this.transform.height)),this.transform.pointLocation(new t.default$1(this.transform.width,0)));return(this.transform.angle||this.transform.pitch)&&(e.extend(this.transform.pointLocation(new t.default$1(this.transform.size.x,0))),e.extend(this.transform.pointLocation(new t.default$1(0,this.transform.size.y)))),e},n.prototype.getMaxBounds=function(){return this.transform.latRange&&2===this.transform.latRange.length&&this.transform.lngRange&&2===this.transform.lngRange.length?new Y([this.transform.lngRange[0],this.transform.latRange[0]],[this.transform.lngRange[1],this.transform.latRange[1]]):null},n.prototype.setMaxBounds=function(t){if(t){var e=Y.convert(t);this.transform.lngRange=[e.getWest(),e.getEast()],this.transform.latRange=[e.getSouth(),e.getNorth()],this.transform._constrain(),this._update()}else null==t&&(this.transform.lngRange=null,this.transform.latRange=null,this._update());return this},n.prototype.setMinZoom=function(t){if((t=null==t?0:t)>=0&&t<=this.transform.maxZoom)return this.transform.minZoom=t,this._update(),this.getZoom()=this.transform.minZoom)return this.transform.maxZoom=t,this._update(),this.getZoom()>t&&this.setZoom(t),this;throw new Error("maxZoom must be greater than the current minZoom")},n.prototype.getRenderWorldCopies=function(){return this.transform.renderWorldCopies},n.prototype.setRenderWorldCopies=function(t){return this.transform.renderWorldCopies=t,this._update(),this},n.prototype.getMaxZoom=function(){return this.transform.maxZoom},n.prototype.project=function(t){return this.transform.locationPoint(G.convert(t))},n.prototype.unproject=function(e){return this.transform.pointLocation(t.default$1.convert(e))},n.prototype.isMoving=function(){return this._moving||this.dragPan.isActive()||this.dragRotate.isActive()||this.scrollZoom.isActive()},n.prototype.isZooming=function(){return this._zooming||this.scrollZoom.isActive()},n.prototype.isRotating=function(){return this._rotating||this.dragRotate.isActive()},n.prototype.on=function(t,e,n){var i,a=this;if(void 0===n)return r.prototype.on.call(this,t,e);var o=function(){if("mouseenter"===t||"mouseover"===t){var r=!1;return{layer:e,listener:n,delegates:{mousemove:function(i){var o=a.getLayer(e)?a.queryRenderedFeatures(i.point,{layers:[e]}):[];o.length?r||(r=!0,n.call(a,new Vr(t,a,i.originalEvent,{features:o}))):r=!1},mouseout:function(){r=!1}}}}if("mouseleave"===t||"mouseout"===t){var o=!1;return{layer:e,listener:n,delegates:{mousemove:function(r){(a.getLayer(e)?a.queryRenderedFeatures(r.point,{layers:[e]}):[]).length?o=!0:o&&(o=!1,n.call(a,new Vr(t,a,r.originalEvent)))},mouseout:function(e){o&&(o=!1,n.call(a,new Vr(t,a,e.originalEvent)))}}}}return{layer:e,listener:n,delegates:(i={},i[t]=function(t){var r=a.getLayer(e)?a.queryRenderedFeatures(t.point,{layers:[e]}):[];r.length&&(t.features=r,n.call(a,t),delete t.features)},i)}}();for(var s in this._delegatedListeners=this._delegatedListeners||{},this._delegatedListeners[t]=this._delegatedListeners[t]||[],this._delegatedListeners[t].push(o),o.delegates)a.on(s,o.delegates[s]);return this},n.prototype.off=function(t,e,n){if(void 0===n)return r.prototype.off.call(this,t,e);if(this._delegatedListeners&&this._delegatedListeners[t])for(var i=this._delegatedListeners[t],a=0;a180;){var o=r.locationPoint(t);if(o.x>=0&&o.y>=0&&o.x<=r.width&&o.y<=r.height)break;t.lng>r.center.lng?t.lng-=360:t.lng+=360}return t}pn.prototype._rotateCompassArrow=function(){var t="rotate("+this._map.transform.angle*(180/Math.PI)+"deg)";this._compassArrow.style.transform=t},pn.prototype.onAdd=function(t){return this._map=t,this.options.showCompass&&(this._map.on("rotate",this._rotateCompassArrow),this._rotateCompassArrow(),this._handler=new Wr(t,{button:"left",element:this._compass}),this._handler.enable()),this._container},pn.prototype.onRemove=function(){s.remove(this._container),this.options.showCompass&&(this._map.off("rotate",this._rotateCompassArrow),this._handler.disable(),delete this._handler),delete this._map},pn.prototype._createButton=function(t,e,r){var n=s.create("button",t,this._container);return n.type="button",n.setAttribute("aria-label",e),n.addEventListener("click",r),n};var gn={center:"translate(-50%,-50%)",top:"translate(-50%,0)","top-left":"translate(0,0)","top-right":"translate(-100%,0)",bottom:"translate(-50%,-100%)","bottom-left":"translate(0,-100%)","bottom-right":"translate(-100%,-100%)",left:"translate(0,-50%)",right:"translate(-100%,-50%)"};function vn(t,e,r){var n=t.classList;for(var i in gn)n.remove("mapboxgl-"+r+"-anchor-"+i);n.add("mapboxgl-"+r+"-anchor-"+e)}var mn=function(e){if((arguments[0]instanceof t.default.HTMLElement||2===arguments.length)&&(e=t.extend({element:e},arguments[1])),t.bindAll(["_update","_onMapClick"],this),this._anchor=e&&e.anchor||"center",this._color=e&&e.color||"#3FB1CE",e&&e.element)this._element=e.element,this._offset=t.default$1.convert(e&&e.offset||[0,0]);else{this._defaultMarker=!0,this._element=s.create("div");var r=s.createNS("http://www.w3.org/2000/svg","svg");r.setAttributeNS(null,"height","41px"),r.setAttributeNS(null,"width","27px"),r.setAttributeNS(null,"viewBox","0 0 27 41");var n=s.createNS("http://www.w3.org/2000/svg","g");n.setAttributeNS(null,"stroke","none"),n.setAttributeNS(null,"stroke-width","1"),n.setAttributeNS(null,"fill","none"),n.setAttributeNS(null,"fill-rule","evenodd");var i=s.createNS("http://www.w3.org/2000/svg","g");i.setAttributeNS(null,"fill-rule","nonzero");var a=s.createNS("http://www.w3.org/2000/svg","g");a.setAttributeNS(null,"transform","translate(3.0, 29.0)"),a.setAttributeNS(null,"fill","#000000");for(var o=0,l=[{rx:"10.5",ry:"5.25002273"},{rx:"10.5",ry:"5.25002273"},{rx:"9.5",ry:"4.77275007"},{rx:"8.5",ry:"4.29549936"},{rx:"7.5",ry:"3.81822308"},{rx:"6.5",ry:"3.34094679"},{rx:"5.5",ry:"2.86367051"},{rx:"4.5",ry:"2.38636864"}];o5280?An(e,c,f/5280,"mi"):An(e,c,f,"ft")}else r&&"nautical"===r.unit?An(e,c,h/1852,"nm"):An(e,c,h,"m")}function An(t,e,r,n){var i,a,o,s=(i=r,(a=Math.pow(10,(""+Math.floor(i)).length-1))*(o=(o=i/a)>=10?10:o>=5?5:o>=3?3:o>=2?2:1)),l=s/r;"m"===n&&s>=1e3&&(s/=1e3,n="km"),t.style.width=e*l+"px",t.innerHTML=s+n}wn.prototype.getDefaultPosition=function(){return"bottom-left"},wn.prototype._onMove=function(){kn(this._map,this._container,this.options)},wn.prototype.onAdd=function(t){return this._map=t,this._container=s.create("div","mapboxgl-ctrl mapboxgl-ctrl-scale",t.getContainer()),this._map.on("move",this._onMove),this._onMove(),this._container},wn.prototype.onRemove=function(){s.remove(this._container),this._map.off("move",this._onMove),this._map=void 0},wn.prototype.setUnit=function(t){this.options.unit=t,kn(this._map,this._container,this.options)};var Tn=function(){this._fullscreen=!1,t.bindAll(["_onClickFullscreen","_changeIcon"],this),"onfullscreenchange"in t.default.document?this._fullscreenchange="fullscreenchange":"onmozfullscreenchange"in 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this._fullscreen},Tn.prototype._changeIcon=function(){(t.default.document.fullscreenElement||t.default.document.mozFullScreenElement||t.default.document.webkitFullscreenElement||t.default.document.msFullscreenElement)===this._mapContainer!==this._fullscreen&&(this._fullscreen=!this._fullscreen,this._fullscreenButton.classList.toggle(this._className+"-shrink"),this._fullscreenButton.classList.toggle(this._className+"-fullscreen"))},Tn.prototype._onClickFullscreen=function(){this._isFullscreen()?t.default.document.exitFullscreen?t.default.document.exitFullscreen():t.default.document.mozCancelFullScreen?t.default.document.mozCancelFullScreen():t.default.document.msExitFullscreen?t.default.document.msExitFullscreen():t.default.document.webkitCancelFullScreen&&t.default.document.webkitCancelFullScreen():this._mapContainer.requestFullscreen?this._mapContainer.requestFullscreen():this._mapContainer.mozRequestFullScreen?this._mapContainer.mozRequestFullScreen():this._mapContainer.msRequestFullscreen?this._mapContainer.msRequestFullscreen():this._mapContainer.webkitRequestFullscreen&&this._mapContainer.webkitRequestFullscreen()};var Mn={closeButton:!0,closeOnClick:!0},Sn=function(e){function r(r){e.call(this),this.options=t.extend(Object.create(Mn),r),t.bindAll(["_update","_onClickClose"],this)}return e&&(r.__proto__=e),r.prototype=Object.create(e&&e.prototype),r.prototype.constructor=r,r.prototype.addTo=function(e){return this._map=e,this._map.on("move",this._update),this.options.closeOnClick&&this._map.on("click",this._onClickClose),this._update(),this.fire(new t.Event("open")),this},r.prototype.isOpen=function(){return!!this._map},r.prototype.remove=function(){return this._content&&s.remove(this._content),this._container&&(s.remove(this._container),delete this._container),this._map&&(this._map.off("move",this._update),this._map.off("click",this._onClickClose),delete this._map),this.fire(new t.Event("close")),this},r.prototype.getLngLat=function(){return this._lngLat},r.prototype.setLngLat=function(t){return this._lngLat=G.convert(t),this._pos=null,this._update(),this},r.prototype.setText=function(e){return this.setDOMContent(t.default.document.createTextNode(e))},r.prototype.setHTML=function(e){var r,n=t.default.document.createDocumentFragment(),i=t.default.document.createElement("body");for(i.innerHTML=e;r=i.firstChild;)n.appendChild(r);return this.setDOMContent(n)},r.prototype.setDOMContent=function(t){return this._createContent(),this._content.appendChild(t),this._update(),this},r.prototype._createContent=function(){this._content&&s.remove(this._content),this._content=s.create("div","mapboxgl-popup-content",this._container),this.options.closeButton&&(this._closeButton=s.create("button","mapboxgl-popup-close-button",this._content),this._closeButton.type="button",this._closeButton.setAttribute("aria-label","Close popup"),this._closeButton.innerHTML="×",this._closeButton.addEventListener("click",this._onClickClose))},r.prototype._update=function(){if(this._map&&this._lngLat&&this._content){this._container||(this._container=s.create("div","mapboxgl-popup",this._map.getContainer()),this._tip=s.create("div","mapboxgl-popup-tip",this._container),this._container.appendChild(this._content)),this._map.transform.renderWorldCopies&&(this._lngLat=dn(this._lngLat,this._pos,this._map.transform));var e=this._pos=this._map.project(this._lngLat),r=this.options.anchor,n=function e(r){if(r){if("number"==typeof r){var n=Math.round(Math.sqrt(.5*Math.pow(r,2)));return{center:new t.default$1(0,0),top:new t.default$1(0,r),"top-left":new t.default$1(n,n),"top-right":new t.default$1(-n,n),bottom:new t.default$1(0,-r),"bottom-left":new t.default$1(n,-n),"bottom-right":new t.default$1(-n,-n),left:new t.default$1(r,0),right:new t.default$1(-r,0)}}if(r instanceof t.default$1||Array.isArray(r)){var i=t.default$1.convert(r);return{center:i,top:i,"top-left":i,"top-right":i,bottom:i,"bottom-left":i,"bottom-right":i,left:i,right:i}}return{center:t.default$1.convert(r.center||[0,0]),top:t.default$1.convert(r.top||[0,0]),"top-left":t.default$1.convert(r["top-left"]||[0,0]),"top-right":t.default$1.convert(r["top-right"]||[0,0]),bottom:t.default$1.convert(r.bottom||[0,0]),"bottom-left":t.default$1.convert(r["bottom-left"]||[0,0]),"bottom-right":t.default$1.convert(r["bottom-right"]||[0,0]),left:t.default$1.convert(r.left||[0,0]),right:t.default$1.convert(r.right||[0,0])}}return e(new t.default$1(0,0))}(this.options.offset);if(!r){var i,a=this._container.offsetWidth,o=this._container.offsetHeight;i=e.y+n.bottom.ythis._map.transform.height-o?["bottom"]:[],e.xthis._map.transform.width-a/2&&i.push("right"),r=0===i.length?"bottom":i.join("-")}var l=e.add(n[r]).round();s.setTransform(this._container,gn[r]+" 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i=this._validate(t,e,r,n.local.invalidDate);return t=i.year(),e=i.month(),t=t<=0?t+1:t,(r=i.day())+Math.ceil(29.5*(e-1))+354*(t-1)+Math.floor((3+11*t)/30)+this.jdEpoch-1},fromJD:function(t){t=Math.floor(t)+.5;var e=Math.floor((30*(t-this.jdEpoch)+10646)/10631);e=e<=0?e-1:e;var r=Math.min(12,Math.ceil((t-29-this.toJD(e,1,1))/29.5)+1),n=t-this.toJD(e,r,1)+1;return this.newDate(e,r,n)}}),n.calendars.islamic=a},{"../main":556,"object-assign":447}],548:[function(t,e,r){var n=t("../main"),i=t("object-assign");function a(t){this.local=this.regionalOptions[t||""]||this.regionalOptions[""]}a.prototype=new 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r=this._validate(t,e,this.minDay,n.local.invalidMonth);return this.daysPerMonth[r.month()-1]+(2===r.month()&&this.leapYear(r.year())?1:0)},weekDay:function(t,e,r){return(this.dayOfWeek(t,e,r)||7)<6},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate);return t=i.year(),e=i.month(),r=i.day(),t<0&&t++,e<=2&&(t--,e+=12),Math.floor(365.25*(t+4716))+Math.floor(30.6001*(e+1))+r-1524.5},fromJD:function(t){var e=Math.floor(t+.5)+1524,r=Math.floor((e-122.1)/365.25),n=Math.floor(365.25*r),i=Math.floor((e-n)/30.6001),a=i-Math.floor(i<14?1:13),o=r-Math.floor(a>2?4716:4715),s=e-n-Math.floor(30.6001*i);return o<=0&&o--,this.newDate(o,a,s)}}),n.calendars.julian=a},{"../main":556,"object-assign":447}],549:[function(t,e,r){var n=t("../main"),i=t("object-assign");function a(t){this.local=this.regionalOptions[t||""]||this.regionalOptions[""]}function o(t,e){return t-e*Math.floor(t/e)}function s(t,e){return o(t-1,e)+1}a.prototype=new 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this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),!1},formatYear:function(t){t=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear).year();var e=Math.floor(t/400);return t%=400,t+=t<0?400:0,e+"."+Math.floor(t/20)+"."+t%20},forYear:function(t){if((t=t.split(".")).length<3)throw"Invalid Mayan year";for(var e=0,r=0;r19||r>0&&n<0)throw"Invalid Mayan year";e=20*e+n}return e},monthsInYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),18},weekOfYear:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate),0},daysInYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),360},daysInMonth:function(t,e){return this._validate(t,e,this.minDay,n.local.invalidMonth),20},daysInWeek:function(){return 5},dayOfWeek:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate).day()},weekDay:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate),!0},extraInfo:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate).toJD(),a=this._toHaab(i),o=this._toTzolkin(i);return{haabMonthName:this.local.haabMonths[a[0]-1],haabMonth:a[0],haabDay:a[1],tzolkinDayName:this.local.tzolkinMonths[o[0]-1],tzolkinDay:o[0],tzolkinTrecena:o[1]}},_toHaab:function(t){var e=o((t-=this.jdEpoch)+8+340,365);return[Math.floor(e/20)+1,o(e,20)]},_toTzolkin:function(t){return[s((t-=this.jdEpoch)+20,20),s(t+4,13)]},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate);return i.day()+20*i.month()+360*i.year()+this.jdEpoch},fromJD:function(t){t=Math.floor(t)+.5-this.jdEpoch;var e=Math.floor(t/360);t%=360,t+=t<0?360:0;var r=Math.floor(t/20),n=t%20;return this.newDate(e,r,n)}}),n.calendars.mayan=a},{"../main":556,"object-assign":447}],550:[function(t,e,r){var n=t("../main"),i=t("object-assign");function a(t){this.local=this.regionalOptions[t||""]||this.regionalOptions[""]}a.prototype=new n.baseCalendar;var 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n.baseCalendar,i(a.prototype,{name:"UmmAlQura",hasYearZero:!1,minMonth:1,firstMonth:1,minDay:1,regionalOptions:{"":{name:"Umm al-Qura",epochs:["BH","AH"],monthNames:["Al-Muharram","Safar","Rabi' al-awwal","Rabi' Al-Thani","Jumada Al-Awwal","Jumada Al-Thani","Rajab","Sha'aban","Ramadan","Shawwal","Dhu al-Qi'dah","Dhu al-Hijjah"],monthNamesShort:["Muh","Saf","Rab1","Rab2","Jum1","Jum2","Raj","Sha'","Ram","Shaw","DhuQ","DhuH"],dayNames:["Yawm al-Ahad","Yawm al-Ithnain","Yawm al-Thal\u0101th\u0101\u2019","Yawm al-Arba\u2018\u0101\u2019","Yawm al-Kham\u012bs","Yawm al-Jum\u2018a","Yawm al-Sabt"],dayNamesMin:["Ah","Ith","Th","Ar","Kh","Ju","Sa"],digits:null,dateFormat:"yyyy/mm/dd",firstDay:6,isRTL:!0}},leapYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear);return 355===this.daysInYear(e.year())},weekOfYear:function(t,e,r){var n=this.newDate(t,e,r);return n.add(-n.dayOfWeek(),"d"),Math.floor((n.dayOfYear()-1)/7)+1},daysInYear:function(t){for(var e=0,r=1;r<=12;r++)e+=this.daysInMonth(t,r);return e},daysInMonth:function(t,e){for(var r=this._validate(t,e,this.minDay,n.local.invalidMonth).toJD()-24e5+.5,i=0,a=0;ar)return o[i]-o[i-1];i++}return 30},weekDay:function(t,e,r){return 5!==this.dayOfWeek(t,e,r)},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate),a=12*(i.year()-1)+i.month()-15292;return i.day()+o[a-1]-1+24e5-.5},fromJD:function(t){for(var e=t-24e5+.5,r=0,n=0;ne);n++)r++;var i=r+15292,a=Math.floor((i-1)/12),s=a+1,l=i-12*a,c=e-o[r-1]+1;return this.newDate(s,l,c)},isValid:function(t,e,r){var i=n.baseCalendar.prototype.isValid.apply(this,arguments);return i&&(i=(t=null!=t.year?t.year:t)>=1276&&t<=1500),i},_validate:function(t,e,r,i){var a=n.baseCalendar.prototype._validate.apply(this,arguments);if(a.year<1276||a.year>1500)throw i.replace(/\{0\}/,this.local.name);return a}}),n.calendars.ummalqura=a;var 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n=t("object-assign");function i(){this.regionalOptions=[],this.regionalOptions[""]={invalidCalendar:"Calendar {0} not found",invalidDate:"Invalid {0} date",invalidMonth:"Invalid {0} month",invalidYear:"Invalid {0} year",differentCalendars:"Cannot mix {0} and {1} dates"},this.local=this.regionalOptions[""],this.calendars={},this._localCals={}}function a(t,e,r,n){if(this._calendar=t,this._year=e,this._month=r,this._day=n,0===this._calendar._validateLevel&&!this._calendar.isValid(this._year,this._month,this._day))throw(c.local.invalidDate||c.regionalOptions[""].invalidDate).replace(/\{0\}/,this._calendar.local.name)}function o(t,e){return"000000".substring(0,e-(t=""+t).length)+t}function s(){this.shortYearCutoff="+10"}function l(t){this.local=this.regionalOptions[t]||this.regionalOptions[""]}n(i.prototype,{instance:function(t,e){t=(t||"gregorian").toLowerCase(),e=e||"";var r=this._localCals[t+"-"+e];if(!r&&this.calendars[t]&&(r=new this.calendars[t](e),this._localCals[t+"-"+e]=r),!r)throw(this.local.invalidCalendar||this.regionalOptions[""].invalidCalendar).replace(/\{0\}/,t);return r},newDate:function(t,e,r,n,i){return(n=(null!=t&&t.year?t.calendar():"string"==typeof n?this.instance(n,i):n)||this.instance()).newDate(t,e,r)},substituteDigits:function(t){return function(e){return(e+"").replace(/[0-9]/g,function(e){return t[e]})}},substituteChineseDigits:function(t,e){return function(r){for(var n="",i=0;r>0;){var a=r%10;n=(0===a?"":t[a]+e[i])+n,i++,r=Math.floor(r/10)}return 0===n.indexOf(t[1]+e[1])&&(n=n.substr(1)),n||t[0]}}}),n(a.prototype,{newDate:function(t,e,r){return this._calendar.newDate(null==t?this:t,e,r)},year:function(t){return 0===arguments.length?this._year:this.set(t,"y")},month:function(t){return 0===arguments.length?this._month:this.set(t,"m")},day:function(t){return 0===arguments.length?this._day:this.set(t,"d")},date:function(t,e,r){if(!this._calendar.isValid(t,e,r))throw(c.local.invalidDate||c.regionalOptions[""].invalidDate).replace(/\{0\}/,this._calendar.local.name);return this._year=t,this._month=e,this._day=r,this},leapYear:function(){return this._calendar.leapYear(this)},epoch:function(){return this._calendar.epoch(this)},formatYear:function(){return this._calendar.formatYear(this)},monthOfYear:function(){return this._calendar.monthOfYear(this)},weekOfYear:function(){return this._calendar.weekOfYear(this)},daysInYear:function(){return this._calendar.daysInYear(this)},dayOfYear:function(){return this._calendar.dayOfYear(this)},daysInMonth:function(){return this._calendar.daysInMonth(this)},dayOfWeek:function(){return this._calendar.dayOfWeek(this)},weekDay:function(){return this._calendar.weekDay(this)},extraInfo:function(){return this._calendar.extraInfo(this)},add:function(t,e){return this._calendar.add(this,t,e)},set:function(t,e){return this._calendar.set(this,t,e)},compareTo:function(t){if(this._calendar.name!==t._calendar.name)throw(c.local.differentCalendars||c.regionalOptions[""].differentCalendars).replace(/\{0\}/,this._calendar.local.name).replace(/\{1\}/,t._calendar.local.name);var e=this._year!==t._year?this._year-t._year:this._month!==t._month?this.monthOfYear()-t.monthOfYear():this._day-t._day;return 0===e?0:e<0?-1:1},calendar:function(){return this._calendar},toJD:function(){return this._calendar.toJD(this)},fromJD:function(t){return this._calendar.fromJD(t)},toJSDate:function(){return this._calendar.toJSDate(this)},fromJSDate:function(t){return this._calendar.fromJSDate(t)},toString:function(){return(this.year()<0?"-":"")+o(Math.abs(this.year()),4)+"-"+o(this.month(),2)+"-"+o(this.day(),2)}}),n(s.prototype,{_validateLevel:0,newDate:function(t,e,r){return null==t?this.today():(t.year&&(this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate),r=t.day(),e=t.month(),t=t.year()),new a(this,t,e,r))},today:function(){return this.fromJSDate(new Date)},epoch:function(t){return this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear).year()<0?this.local.epochs[0]:this.local.epochs[1]},formatYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear);return(e.year()<0?"-":"")+o(Math.abs(e.year()),4)},monthsInYear:function(t){return this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear),12},monthOfYear:function(t,e){var r=this._validate(t,e,this.minDay,c.local.invalidMonth||c.regionalOptions[""].invalidMonth);return(r.month()+this.monthsInYear(r)-this.firstMonth)%this.monthsInYear(r)+this.minMonth},fromMonthOfYear:function(t,e){var r=(e+this.firstMonth-2*this.minMonth)%this.monthsInYear(t)+this.minMonth;return this._validate(t,r,this.minDay,c.local.invalidMonth||c.regionalOptions[""].invalidMonth),r},daysInYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear);return this.leapYear(e)?366:365},dayOfYear:function(t,e,r){var n=this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate);return n.toJD()-this.newDate(n.year(),this.fromMonthOfYear(n.year(),this.minMonth),this.minDay).toJD()+1},daysInWeek:function(){return 7},dayOfWeek:function(t,e,r){var n=this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate);return(Math.floor(this.toJD(n))+2)%this.daysInWeek()},extraInfo:function(t,e,r){return this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate),{}},add:function(t,e,r){return this._validate(t,this.minMonth,this.minDay,c.local.invalidDate||c.regionalOptions[""].invalidDate),this._correctAdd(t,this._add(t,e,r),e,r)},_add:function(t,e,r){if(this._validateLevel++,"d"===r||"w"===r){var n=t.toJD()+e*("w"===r?this.daysInWeek():1),i=t.calendar().fromJD(n);return this._validateLevel--,[i.year(),i.month(),i.day()]}try{var a=t.year()+("y"===r?e:0),o=t.monthOfYear()+("m"===r?e:0);i=t.day();"y"===r?(t.month()!==this.fromMonthOfYear(a,o)&&(o=this.newDate(a,t.month(),this.minDay).monthOfYear()),o=Math.min(o,this.monthsInYear(a)),i=Math.min(i,this.daysInMonth(a,this.fromMonthOfYear(a,o)))):"m"===r&&(!function(t){for(;oe-1+t.minMonth;)a++,o-=e,e=t.monthsInYear(a)}(this),i=Math.min(i,this.daysInMonth(a,this.fromMonthOfYear(a,o))));var s=[a,this.fromMonthOfYear(a,o),i];return this._validateLevel--,s}catch(t){throw this._validateLevel--,t}},_correctAdd:function(t,e,r,n){if(!(this.hasYearZero||"y"!==n&&"m"!==n||0!==e[0]&&t.year()>0==e[0]>0)){var 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n=t("./arrow_paths"),i=t("../../plots/font_attributes"),a=t("../../plots/cartesian/constants"),o=t("../../plot_api/plot_template").templatedArray;e.exports=o("annotation",{visible:{valType:"boolean",dflt:!0,editType:"calc+arraydraw"},text:{valType:"string",editType:"calc+arraydraw"},textangle:{valType:"angle",dflt:0,editType:"calc+arraydraw"},font:i({editType:"calc+arraydraw",colorEditType:"arraydraw"}),width:{valType:"number",min:1,dflt:null,editType:"calc+arraydraw"},height:{valType:"number",min:1,dflt:null,editType:"calc+arraydraw"},opacity:{valType:"number",min:0,max:1,dflt:1,editType:"arraydraw"},align:{valType:"enumerated",values:["left","center","right"],dflt:"center",editType:"arraydraw"},valign:{valType:"enumerated",values:["top","middle","bottom"],dflt:"middle",editType:"arraydraw"},bgcolor:{valType:"color",dflt:"rgba(0,0,0,0)",editType:"arraydraw"},bordercolor:{valType:"color",dflt:"rgba(0,0,0,0)",editType:"arraydraw"},borderpad:{valType:"number",min:0,dflt:1,editType:"calc+arraydraw"},borderwidth:{valType:"number",min:0,dflt:1,editType:"calc+arraydraw"},showarrow:{valType:"boolean",dflt:!0,editType:"calc+arraydraw"},arrowcolor:{valType:"color",editType:"arraydraw"},arrowhead:{valType:"integer",min:0,max:n.length,dflt:1,editType:"arraydraw"},startarrowhead:{valType:"integer",min:0,max:n.length,dflt:1,editType:"arraydraw"},arrowside:{valType:"flaglist",flags:["end","start"],extras:["none"],dflt:"end",editType:"arraydraw"},arrowsize:{valType:"number",min:.3,dflt:1,editType:"calc+arraydraw"},startarrowsize:{valType:"number",min:.3,dflt:1,editType:"calc+arraydraw"},arrowwidth:{valType:"number",min:.1,editType:"calc+arraydraw"},standoff:{valType:"number",min:0,dflt:0,editType:"calc+arraydraw"},startstandoff:{valType:"number",min:0,dflt:0,editType:"calc+arraydraw"},ax:{valType:"any",editType:"calc+arraydraw"},ay:{valType:"any",editType:"calc+arraydraw"},axref:{valType:"enumerated",dflt:"pixel",values:["pixel",a.idRegex.x.toString()],editType:"calc"},ayref:{valType:"enumerated",dflt:"pixel",values:["pixel",a.idRegex.y.toString()],editType:"calc"},xref:{valType:"enumerated",values:["paper",a.idRegex.x.toString()],editType:"calc"},x:{valType:"any",editType:"calc+arraydraw"},xanchor:{valType:"enumerated",values:["auto","left","center","right"],dflt:"auto",editType:"calc+arraydraw"},xshift:{valType:"number",dflt:0,editType:"calc+arraydraw"},yref:{valType:"enumerated",values:["paper",a.idRegex.y.toString()],editType:"calc"},y:{valType:"any",editType:"calc+arraydraw"},yanchor:{valType:"enumerated",values:["auto","top","middle","bottom"],dflt:"auto",editType:"calc+arraydraw"},yshift:{valType:"number",dflt:0,editType:"calc+arraydraw"},clicktoshow:{valType:"enumerated",values:[!1,"onoff","onout"],dflt:!1,editType:"arraydraw"},xclick:{valType:"any",editType:"arraydraw"},yclick:{valType:"any",editType:"arraydraw"},hovertext:{valType:"string",editType:"arraydraw"},hoverlabel:{bgcolor:{valType:"color",editType:"arraydraw"},bordercolor:{valType:"color",editType:"arraydraw"},font:i({editType:"arraydraw"}),editType:"arraydraw"},captureevents:{valType:"boolean",editType:"arraydraw"},editType:"calc",_deprecated:{ref:{valType:"string",editType:"calc"}}})},{"../../plot_api/plot_template":739,"../../plots/cartesian/constants":755,"../../plots/font_attributes":775,"./arrow_paths":560}],562:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../plots/cartesian/axes"),a=t("./draw").draw;function o(t){var e=t._fullLayout;n.filterVisible(e.annotations).forEach(function(e){var r=i.getFromId(t,e.xref),n=i.getFromId(t,e.yref);e._extremes={},r&&s(e,r),n&&s(e,n)})}function s(t,e){var r,n=e._id,a=n.charAt(0),o=t[a],s=t["a"+a],l=t[a+"ref"],c=t["a"+a+"ref"],u=t["_"+a+"padplus"],h=t["_"+a+"padminus"],f={x:1,y:-1}[a]*t[a+"shift"],p=3*t.arrowsize*t.arrowwidth||0,d=p+f,g=p-f,v=3*t.startarrowsize*t.arrowwidth||0,m=v+f,y=v-f;if(c===l){var x=i.findExtremes(e,[e.r2c(o)],{ppadplus:d,ppadminus:g}),b=i.findExtremes(e,[e.r2c(s)],{ppadplus:Math.max(u,m),ppadminus:Math.max(h,y)});r={min:[x.min[0],b.min[0]],max:[x.max[0],b.max[0]]}}else m=s?m+s:m,y=s?y-s:y,r=i.findExtremes(e,[e.r2c(o)],{ppadplus:Math.max(u,d,m),ppadminus:Math.max(h,g,y)});t._extremes[n]=r}e.exports=function(t){var e=t._fullLayout;if(n.filterVisible(e.annotations).length&&t._fullData.length)return n.syncOrAsync([a,o],t)}},{"../../lib":701,"../../plots/cartesian/axes":749,"./draw":567}],563:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../registry"),a=t("../../plot_api/plot_template").arrayEditor;function o(t,e){var r,n,i,a,o,l,c,u=t._fullLayout.annotations,h=[],f=[],p=[],d=(e||[]).length;for(r=0;r0||r.explicitOff.length>0},onClick:function(t,e){var r,s,l=o(t,e),c=l.on,u=l.off.concat(l.explicitOff),h={},f=t._fullLayout.annotations;if(!c.length&&!u.length)return;for(r=0;r2/3?"right":"center"),{center:0,middle:0,left:.5,bottom:-.5,right:-.5,top:.5}[e]}for(var q=!1,H=["x","y"],G=0;G1)&&(Q===K?((lt=tt.r2fraction(e["a"+J]))<0||lt>1)&&(q=!0):q=!0),Y=tt._offset+tt.r2p(e[J]),Z=.5}else"x"===J?(X=e[J],Y=b.l+b.w*X):(X=1-e[J],Y=b.t+b.h*X),Z=e.showarrow?.5:X;if(e.showarrow){st.head=Y;var ct=e["a"+J];$=rt*V(.5,e.xanchor)-nt*V(.5,e.yanchor),Q===K?(st.tail=tt._offset+tt.r2p(ct),W=$):(st.tail=Y+ct,W=$+ct),st.text=st.tail+$;var 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X,Z,$=q.append("path").classed("annotation-arrow",!0).classed("anndrag",!0).classed("cursor-move",!0).attr({d:"M3,3H-3V-3H3ZM0,0L"+(f-G)+","+(d-Y),transform:"translate("+G+","+Y+")"}).style("stroke-width",j+6+"px").call(l.stroke,"rgba(0,0,0,0)").call(l.fill,"rgba(0,0,0,0)");p.init({element:$.node(),gd:t,prepFn:function(){var t=c.getTranslate(I);X=t.x,Z=t.y,s&&s.autorange&&k(s._name+".autorange",!0),v&&v.autorange&&k(v._name+".autorange",!0)},moveFn:function(t,r){var n=w(X,Z),i=n[0]+t,a=n[1]+r;I.call(c.setTranslate,i,a),A("x",s?s.p2r(s.r2p(e.x)+t):e.x+t/b.w),A("y",v?v.p2r(v.r2p(e.y)+r):e.y-r/b.h),e.axref===e.xref&&A("ax",s.p2r(s.r2p(e.ax)+t)),e.ayref===e.yref&&A("ay",v.p2r(v.r2p(e.ay)+r)),q.attr("transform","translate("+t+","+r+")"),L.attr({transform:"rotate("+E+","+i+","+a+")"})},doneFn:function(){i.call("_guiRelayout",t,T());var 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Context lost.")})};var w=["xaxis","yaxis","zaxis"];function k(t,e,r){for(var n=t.fullSceneLayout,i=0;i<3;i++){var a=w[i],o=a.charAt(0),s=n[a],l=e[o],c=e[o+"calendar"],h=e["_"+o+"length"];if(u.isArrayOrTypedArray(l))for(var f,p=0;p<(h||l.length);p++)if(u.isArrayOrTypedArray(l[p]))for(var d=0;dg[1][a])g[0][a]=-1,g[1][a]=1;else{var E=g[1][a]-g[0][a];g[0][a]-=E/32,g[1][a]+=E/32}if("reversed"===s.autorange){var C=g[0][a];g[0][a]=g[1][a],g[1][a]=C}}else{var L=s.range;g[0][a]=s.r2l(L[0]),g[1][a]=s.r2l(L[1])}g[0][a]===g[1][a]&&(g[0][a]-=1,g[1][a]+=1),v[a]=g[1][a]-g[0][a],this.glplot.bounds[0][a]=g[0][a]*f[a],this.glplot.bounds[1][a]=g[1][a]*f[a]}var z=[1,1,1];for(a=0;a<3;++a){var O=m[l=(s=c[w[a]]).type];z[a]=Math.pow(O.acc,1/O.count)/f[a]}var I;if("auto"===c.aspectmode)I=Math.max.apply(null,z)/Math.min.apply(null,z)<=4?z:[1,1,1];else if("cube"===c.aspectmode)I=[1,1,1];else if("data"===c.aspectmode)I=z;else{if("manual"!==c.aspectmode)throw new Error("scene.js aspectRatio was not one of the enumerated types");var D=c.aspectratio;I=[D.x,D.y,D.z]}c.aspectratio.x=u.aspectratio.x=I[0],c.aspectratio.y=u.aspectratio.y=I[1],c.aspectratio.z=u.aspectratio.z=I[2],this.glplot.aspect=I;var P=c.domain||null,R=e._size||null;if(P&&R){var F=this.container.style;F.position="absolute",F.left=R.l+P.x[0]*R.w+"px",F.top=R.t+(1-P.y[1])*R.h+"px",F.width=R.w*(P.x[1]-P.x[0])+"px",F.height=R.h*(P.y[1]-P.y[0])+"px"}this.glplot.redraw()}},_.destroy=function(){this.glplot&&(this.camera.mouseListener.enabled=!1,this.container.removeEventListener("wheel",this.camera.wheelListener),this.camera=this.glplot.camera=null,this.glplot.dispose(),this.container.parentNode.removeChild(this.container),this.glplot=null)},_.getCamera=function(){return this.glplot.camera.view.recalcMatrix(this.camera.view.lastT()),A(this.glplot.camera)},_.setCamera=function(t){var e;this.glplot.camera.lookAt.apply(this,[[(e=t).eye.x,e.eye.y,e.eye.z],[e.center.x,e.center.y,e.center.z],[e.up.x,e.up.y,e.up.z]]);var r="orthographic"===t.projection.type;if(r!==this.glplot.camera._ortho){this.glplot.redraw();var n=this.glplot.pixelRatio,i=this.glplot.clearColor;this.glplot.gl.clearColor(i[0],i[1],i[2],i[3]),this.glplot.gl.clear(this.glplot.gl.DEPTH_BUFFER_BIT|this.glplot.gl.COLOR_BUFFER_BIT),this.glplot.dispose(),x(this,n),this.glplot.camera._ortho=r}},_.saveCamera=function(t){var e=this.fullLayout,r=this.getCamera(),n=u.nestedProperty(t,this.id+".camera"),i=n.get(),a=!1;function o(t,e,r,n){var i=["up","center","eye"],a=["x","y","z"];return e[i[r]]&&t[i[r]][a[n]]===e[i[r]][a[n]]}if(void 0===i)a=!0;else{for(var s=0;s<3;s++)for(var l=0;l<3;l++)if(!o(r,i,s,l)){a=!0;break}(!i.projection||r.projection&&r.projection.type!==i.projection.type)&&(a=!0)}if(a){var h={};h[this.id+".camera"]=i,c.call("_storeDirectGUIEdit",t,e._preGUI,h),n.set(r),u.nestedProperty(e,this.id+".camera").set(r)}return a},_.updateFx=function(t,e){var r=this.camera;if(r)if("orbit"===t)r.mode="orbit",r.keyBindingMode="rotate";else if("turntable"===t){r.up=[0,0,1],r.mode="turntable",r.keyBindingMode="rotate";var n=this.graphDiv,i=n._fullLayout,a=this.fullSceneLayout.camera,o=a.up.x,s=a.up.y,l=a.up.z;if(l/Math.sqrt(o*o+s*s+l*l)<.999){var h=this.id+".camera.up",f={x:0,y:0,z:1},p={};p[h]=f;var d=n.layout;c.call("_storeDirectGUIEdit",d,i._preGUI,p),a.up=f,u.nestedProperty(d,h).set(f)}}else r.keyBindingMode=t;this.fullSceneLayout.hovermode=e},_.toImage=function(t){t||(t="png"),this.staticMode&&this.container.appendChild(n),this.glplot.redraw();var e=this.glplot.gl,r=e.drawingBufferWidth,i=e.drawingBufferHeight;e.bindFramebuffer(e.FRAMEBUFFER,null);var a=new Uint8Array(r*i*4);e.readPixels(0,0,r,i,e.RGBA,e.UNSIGNED_BYTE,a);for(var o=0,s=i-1;o0)}function l(t){var e={},r={};switch(t.type){case"circle":n.extendFlat(r,{"circle-radius":t.circle.radius,"circle-color":t.color,"circle-opacity":t.opacity});break;case"line":n.extendFlat(r,{"line-width":t.line.width,"line-color":t.color,"line-opacity":t.opacity,"line-dasharray":t.line.dash});break;case"fill":n.extendFlat(r,{"fill-color":t.color,"fill-outline-color":t.fill.outlinecolor,"fill-opacity":t.opacity});break;case"symbol":var a=t.symbol,o=i(a.textposition,a.iconsize);n.extendFlat(e,{"icon-image":a.icon+"-15","icon-size":a.iconsize/10,"text-field":a.text,"text-size":a.textfont.size,"text-anchor":o.anchor,"text-offset":o.offset,"symbol-placement":a.placement}),n.extendFlat(r,{"icon-color":t.color,"text-color":a.textfont.color,"text-opacity":t.opacity})}return{layout:e,paint:r}}o.update=function(t){this.visible?this.needsNewSource(t)?(this.removeLayer(),this.updateSource(t),this.updateLayer(t)):this.needsNewLayer(t)?this.updateLayer(t):this.updateStyle(t):(this.updateSource(t),this.updateLayer(t)),this.visible=s(t)},o.needsNewSource=function(t){return this.sourceType!==t.sourcetype||this.source!==t.source||this.layerType!==t.type},o.needsNewLayer=function(t){return this.layerType!==t.type||this.below!==t.below},o.updateSource=function(t){var e=this.map;if(e.getSource(this.idSource)&&e.removeSource(this.idSource),this.sourceType=t.sourcetype,this.source=t.source,s(t)){var r=function(t){var e,r=t.sourcetype,n=t.source,i={type:r};"geojson"===r?e="data":"vector"===r&&(e="string"==typeof n?"url":"tiles");return i[e]=n,i}(t);e.addSource(this.idSource,r)}},o.updateLayer=function(t){var e=this.map,r=l(t);this.removeLayer(),this.layerType=t.type,s(t)&&e.addLayer({id:this.idLayer,source:this.idSource,"source-layer":t.sourcelayer||"",type:t.type,minzoom:t.minzoom,maxzoom:t.maxzoom,layout:r.layout,paint:r.paint},t.below)},o.updateStyle=function(t){if(s(t)){var e=l(t);this.mapbox.setOptions(this.idLayer,"setLayoutProperty",e.layout),this.mapbox.setOptions(this.idLayer,"setPaintProperty",e.paint)}},o.removeLayer=function(){var t=this.map;t.getLayer(this.idLayer)&&t.removeLayer(this.idLayer)},o.dispose=function(){var t=this.map;t.removeLayer(this.idLayer),t.removeSource(this.idSource)},e.exports=function(t,e,r){var n=new a(t,e);return n.update(r),n}},{"../../lib":701,"./convert_text_opts":803}],806:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../components/color").defaultLine,a=t("../domain").attributes,o=t("../font_attributes"),s=t("../../traces/scatter/attributes").textposition,l=t("../../plot_api/edit_types").overrideAll,c=t("../../plot_api/plot_template").templatedArray,u=o({});u.family.dflt="Open Sans Regular, Arial Unicode MS 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strict";var n=t("../../lib"),i=t("../subplot_defaults"),a=t("../array_container_defaults"),o=t("./layout_attributes");function s(t,e,r,n){r("accesstoken",n.accessToken),r("style"),r("center.lon"),r("center.lat"),r("zoom"),r("bearing"),r("pitch"),a(t,e,{name:"layers",handleItemDefaults:l}),e._input=t}function l(t,e){function r(r,i){return n.coerce(t,e,o.layers,r,i)}if(r("visible")){var i=r("sourcetype");r("source"),"vector"===i&&r("sourcelayer");var a=r("type");r("below"),r("color"),r("opacity"),r("minzoom"),r("maxzoom"),"circle"===a&&r("circle.radius"),"line"===a&&(r("line.width"),r("line.dash")),"fill"===a&&r("fill.outlinecolor"),"symbol"===a&&(r("symbol.icon"),r("symbol.iconsize"),r("symbol.text"),n.coerceFont(r,"symbol.textfont"),r("symbol.textposition"),r("symbol.placement"))}}e.exports=function(t,e,r){i(t,e,r,{type:"mapbox",attributes:o,handleDefaults:s,partition:"y",accessToken:e._mapboxAccessToken})}},{"../../lib":701,"../array_container_defaults":745,"../subplot_defaults":824,"./layout_attributes":806}],808:[function(t,e,r){"use strict";var n=t("mapbox-gl"),i=t("../../components/fx"),a=t("../../lib"),o=t("../../registry"),s=t("../../components/dragelement"),l=t("../cartesian/select").prepSelect,c=t("../cartesian/select").selectOnClick,u=t("./constants"),h=t("./layout_attributes"),f=t("./layers");function p(t){this.id=t.id,this.gd=t.gd,this.container=t.container,this.isStatic=t.staticPlot;var e=t.fullLayout;this.uid=e._uid+"-"+this.id,this.div=null,this.xaxis=null,this.yaxis=null,this.createFramework(e),this.map=null,this.accessToken=null,this.styleObj=null,this.traceHash={},this.layerList=[]}var d=p.prototype;function g(t){var e=h.style.values,r=h.style.dflt,n={};return a.isPlainObject(t)?(n.id=t.id,n.style=t):"string"==typeof t?(n.id=t,n.style=-1!==e.indexOf(t)?v(t):t):(n.id=r,n.style=v(r)),n.transition={duration:0,delay:0},n}function v(t){return u.styleUrlPrefix+t+"-"+u.styleUrlSuffix}function m(t){return[t.lon,t.lat]}e.exports=function(t){return new p(t)},d.plot=function(t,e,r){var n,i=this,a=e[i.id];i.map&&a.accesstoken!==i.accessToken&&(i.map.remove(),i.map=null,i.styleObj=null,i.traceHash=[],i.layerList={}),n=i.map?new Promise(function(r,n){i.updateMap(t,e,r,n)}):new Promise(function(r,n){i.createMap(t,e,r,n)}),r.push(n)},d.createMap=function(t,e,r,a){var s=this,l=s.gd,h=e[s.id],f=s.styleObj=g(h.style);s.accessToken=h.accesstoken;var p=s.map=new n.Map({container:s.div,style:f.style,center:m(h.center),zoom:h.zoom,bearing:h.bearing,pitch:h.pitch,interactive:!s.isStatic,preserveDrawingBuffer:s.isStatic,doubleClickZoom:!1,boxZoom:!1}),d=u.controlContainerClassName,v=s.div.getElementsByClassName(d)[0];if(s.div.removeChild(v),p._canvas.style.left="0px",p._canvas.style.top="0px",s.rejectOnError(a),p.once("load",function(){s.updateData(t),s.updateLayout(e),s.resolveOnRender(r)}),!s.isStatic){var y=!1;p.on("moveend",function(t){if(s.map){if(t.originalEvent||y){var e=l._fullLayout[s.id];o.call("_storeDirectGUIEdit",l.layout,l._fullLayout._preGUI,s.getViewEdits(e));var r=s.getView();e._input.center=e.center=r.center,e._input.zoom=e.zoom=r.zoom,e._input.bearing=e.bearing=r.bearing,e._input.pitch=e.pitch=r.pitch,l.emit("plotly_relayout",s.getViewEdits(r))}y=!1}}),p.on("wheel",function(){y=!0}),p.on("mousemove",function(t){var e=s.div.getBoundingClientRect();t.clientX=t.point.x+e.left,t.clientY=t.point.y+e.top,t.target.getBoundingClientRect=function(){return e},s.xaxis.p2c=function(){return t.lngLat.lng},s.yaxis.p2c=function(){return t.lngLat.lat},i.hover(l,t,s.id)}),p.on("dragstart",x),p.on("zoomstart",x),p.on("dblclick",function(){var t=l._fullLayout[s.id];o.call("_storeDirectGUIEdit",l.layout,l._fullLayout._preGUI,s.getViewEdits(t));var e=s.viewInitial;p.setCenter(m(e.center)),p.setZoom(e.zoom),p.setBearing(e.bearing),p.setPitch(e.pitch);var r=s.getView();t._input.center=t.center=r.center,t._input.zoom=t.zoom=r.zoom,t._input.bearing=t.bearing=r.bearing,t._input.pitch=t.pitch=r.pitch,l.emit("plotly_doubleclick",null),l.emit("plotly_relayout",s.getViewEdits(r))}),s.clearSelect=function(){l._fullLayout._zoomlayer.selectAll(".select-outline").remove()},s.onClickInPanFn=function(t){return function(e){var r=l._fullLayout.clickmode;r.indexOf("select")>-1&&c(e.originalEvent,l,[s.xaxis],[s.yaxis],s.id,t),r.indexOf("event")>-1&&i.click(l,e.originalEvent)}}}function x(){i.loneUnhover(e._toppaper)}},d.updateMap=function(t,e,r,n){var i=this,a=i.map,o=e[this.id];i.rejectOnError(n);var s=g(o.style);i.styleObj.id!==s.id?(i.styleObj=s,a.setStyle(s.style),a.once("styledata",function(){i.traceHash={},i.updateData(t),i.updateLayout(e),i.resolveOnRender(r)})):(i.updateData(t),i.updateLayout(e),i.resolveOnRender(r))},d.updateData=function(t){var e,r,n,i,a=this.traceHash;for(n=0;n=e.width-20?(a["text-anchor"]="start",a.x=5):(a["text-anchor"]="end",a.x=e._paper.attr("width")-7),r.attr(a);var o=r.select(".js-link-to-tool"),s=r.select(".js-link-spacer"),u=r.select(".js-sourcelinks");t._context.showSources&&t._context.showSources(t),t._context.showLink&&function(t,e){e.text("");var r=e.append("a").attr({"xlink:xlink:href":"#",class:"link--impt link--embedview","font-weight":"bold"}).text(t._context.linkText+" "+String.fromCharCode(187));if(t._context.sendData)r.on("click",function(){v.sendDataToCloud(t)});else{var n=window.location.pathname.split("/"),i=window.location.search;r.attr({"xlink:xlink:show":"new","xlink:xlink:href":"/"+n[2].split(".")[0]+"/"+n[1]+i})}}(t,o),s.text(o.text()&&u.text()?" - ":"")}},v.sendDataToCloud=function(t){t.emit("plotly_beforeexport");var e=(window.PLOTLYENV||{}).BASE_URL||t._context.plotlyServerURL,r=n.select(t).append("div").attr("id","hiddenform").style("display","none"),i=r.append("form").attr({action:e+"/external",method:"post",target:"_blank"});return i.append("input").attr({type:"text",name:"data"}).node().value=v.graphJson(t,!1,"keepdata"),i.node().submit(),r.remove(),t.emit("plotly_afterexport"),!1};var x=["days","shortDays","months","shortMonths","periods","dateTime","date","time","decimal","thousands","grouping","currency"],b=["year","month","dayMonth","dayMonthYear"];function 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o.PolyChart()},o.BarChart.defaultConfig=function(){return{geometryConfig:{geometryType:"bar"}}},o.AreaChart=function(){return o.PolyChart()},o.AreaChart.defaultConfig=function(){return{geometryConfig:{geometryType:"arc"}}},o.DotPlot=function(){return o.PolyChart()},o.DotPlot.defaultConfig=function(){return{geometryConfig:{geometryType:"dot",dotType:"circle"}}},o.LinePlot=function(){return o.PolyChart()},o.LinePlot.defaultConfig=function(){return{geometryConfig:{geometryType:"line"}}},o.Legend=function(){var t=o.Legend.defaultConfig(),e=n.dispatch("hover");function r(){var e=t.legendConfig,a=t.data.map(function(t,r){return[].concat(t).map(function(t,n){var a=i({},e.elements[r]);return a.name=t,a.color=[].concat(e.elements[r].color)[n],a})}),o=n.merge(a);o=o.filter(function(t,r){return e.elements[r]&&(e.elements[r].visibleInLegend||"undefined"==typeof e.elements[r].visibleInLegend)}),e.reverseOrder&&(o=o.reverse());var s=e.container;("string"==typeof s||s.nodeName)&&(s=n.select(s));var l=o.map(function(t,e){return t.color}),c=e.fontSize,u=null==e.isContinuous?"number"==typeof o[0]:e.isContinuous,h=u?e.height:c*o.length,f=s.classed("legend-group",!0).selectAll("svg").data([0]),p=f.enter().append("svg").attr({width:300,height:h+c,xmlns:"http://www.w3.org/2000/svg","xmlns:xlink":"http://www.w3.org/1999/xlink",version:"1.1"});p.append("g").classed("legend-axis",!0),p.append("g").classed("legend-marks",!0);var d=n.range(o.length),g=n.scale[u?"linear":"ordinal"]().domain(d).range(l),v=n.scale[u?"linear":"ordinal"]().domain(d)[u?"range":"rangePoints"]([0,h]);if(u){var m=f.select(".legend-marks").append("defs").append("linearGradient").attr({id:"grad1",x1:"0%",y1:"0%",x2:"0%",y2:"100%"}).selectAll("stop").data(l);m.enter().append("stop"),m.attr({offset:function(t,e){return e/(l.length-1)*100+"%"}}).style({"stop-color":function(t,e){return t}}),f.append("rect").classed("legend-mark",!0).attr({height:e.height,width:e.colorBandWidth,fill:"url(#grad1)"})}else{var y=f.select(".legend-marks").selectAll("path.legend-mark").data(o);y.enter().append("path").classed("legend-mark",!0),y.attr({transform:function(t,e){return"translate("+[c/2,v(e)+c/2]+")"},d:function(t,e){var r,i,a,o=t.symbol;return a=3*(i=c),"line"===(r=o)?"M"+[[-i/2,-i/12],[i/2,-i/12],[i/2,i/12],[-i/2,i/12]]+"Z":-1!=n.svg.symbolTypes.indexOf(r)?n.svg.symbol().type(r).size(a)():n.svg.symbol().type("square").size(a)()},fill:function(t,e){return g(e)}}),y.exit().remove()}var x=n.svg.axis().scale(v).orient("right"),b=f.select("g.legend-axis").attr({transform:"translate("+[u?e.colorBandWidth:c,c/2]+")"}).call(x);return b.selectAll(".domain").style({fill:"none",stroke:"none"}),b.selectAll("line").style({fill:"none",stroke:u?e.textColor:"none"}),b.selectAll("text").style({fill:e.textColor,"font-size":e.fontSize}).text(function(t,e){return o[e].name}),r}return r.config=function(e){return arguments.length?(i(t,e),this):t},n.rebind(r,e,"on"),r},o.Legend.defaultConfig=function(t,e){return{data:["a","b","c"],legendConfig:{elements:[{symbol:"line",color:"red"},{symbol:"square",color:"yellow"},{symbol:"diamond",color:"limegreen"}],height:150,colorBandWidth:30,fontSize:12,container:"body",isContinuous:null,textColor:"grey",reverseOrder:!1}}},o.tooltipPanel=function(){var t,e,r,a={container:null,hasTick:!1,fontSize:12,color:"white",padding:5},s="tooltip-"+o.tooltipPanel.uid++,l=10,c=function(){var n=(t=a.container.selectAll("g."+s).data([0])).enter().append("g").classed(s,!0).style({"pointer-events":"none",display:"none"});return r=n.append("path").style({fill:"white","fill-opacity":.9}).attr({d:"M0 0"}),e=n.append("text").attr({dx:a.padding+l,dy:.3*+a.fontSize}),c};return c.text=function(i){var o=n.hsl(a.color).l,s=o>=.5?"#aaa":"white",u=o>=.5?"black":"white",h=i||"";e.style({fill:u,"font-size":a.fontSize+"px"}).text(h);var f=a.padding,p=e.node().getBBox(),d={fill:a.color,stroke:s,"stroke-width":"2px"},g=p.width+2*f+l,v=p.height+2*f;return r.attr({d:"M"+[[l,-v/2],[l,-v/4],[a.hasTick?0:l,0],[l,v/4],[l,v/2],[g,v/2],[g,-v/2]].join("L")+"Z"}).style(d),t.attr({transform:"translate("+[l,-v/2+2*f]+")"}),t.style({display:"block"}),c},c.move=function(e){if(t)return t.attr({transform:"translate("+[e[0],e[1]]+")"}).style({display:"block"}),c},c.hide=function(){if(t)return t.style({display:"none"}),c},c.show=function(){if(t)return t.style({display:"block"}),c},c.config=function(t){return i(a,t),c},c},o.tooltipPanel.uid=1,o.adapter={},o.adapter.plotly=function(){var t={convert:function(t,e){var r={};if(t.data&&(r.data=t.data.map(function(t,r){var n=i({},t);return[[n,["marker","color"],["color"]],[n,["marker","opacity"],["opacity"]],[n,["marker","line","color"],["strokeColor"]],[n,["marker","line","dash"],["strokeDash"]],[n,["marker","line","width"],["strokeSize"]],[n,["marker","symbol"],["dotType"]],[n,["marker","size"],["dotSize"]],[n,["marker","barWidth"],["barWidth"]],[n,["line","interpolation"],["lineInterpolation"]],[n,["showlegend"],["visibleInLegend"]]].forEach(function(t,r){o.util.translator.apply(null,t.concat(e))}),e||delete n.marker,e&&delete n.groupId,e?("LinePlot"===n.geometry?(n.type="scatter",!0===n.dotVisible?(delete n.dotVisible,n.mode="lines+markers"):n.mode="lines"):"DotPlot"===n.geometry?(n.type="scatter",n.mode="markers"):"AreaChart"===n.geometry?n.type="area":"BarChart"===n.geometry&&(n.type="bar"),delete n.geometry):("scatter"===n.type?"lines"===n.mode?n.geometry="LinePlot":"markers"===n.mode?n.geometry="DotPlot":"lines+markers"===n.mode&&(n.geometry="LinePlot",n.dotVisible=!0):"area"===n.type?n.geometry="AreaChart":"bar"===n.type&&(n.geometry="BarChart"),delete n.mode,delete n.type),n}),!e&&t.layout&&"stack"===t.layout.barmode)){var a=o.util.duplicates(r.data.map(function(t,e){return t.geometry}));r.data.forEach(function(t,e){var n=a.indexOf(t.geometry);-1!=n&&(r.data[e].groupId=n)})}if(t.layout){var s=i({},t.layout);if([[s,["plot_bgcolor"],["backgroundColor"]],[s,["showlegend"],["showLegend"]],[s,["radialaxis"],["radialAxis"]],[s,["angularaxis"],["angularAxis"]],[s.angularaxis,["showline"],["gridLinesVisible"]],[s.angularaxis,["showticklabels"],["labelsVisible"]],[s.angularaxis,["nticks"],["ticksCount"]],[s.angularaxis,["tickorientation"],["tickOrientation"]],[s.angularaxis,["ticksuffix"],["ticksSuffix"]],[s.angularaxis,["range"],["domain"]],[s.angularaxis,["endpadding"],["endPadding"]],[s.radialaxis,["showline"],["gridLinesVisible"]],[s.radialaxis,["tickorientation"],["tickOrientation"]],[s.radialaxis,["ticksuffix"],["ticksSuffix"]],[s.radialaxis,["range"],["domain"]],[s.angularAxis,["showline"],["gridLinesVisible"]],[s.angularAxis,["showticklabels"],["labelsVisible"]],[s.angularAxis,["nticks"],["ticksCount"]],[s.angularAxis,["tickorientation"],["tickOrientation"]],[s.angularAxis,["ticksuffix"],["ticksSuffix"]],[s.angularAxis,["range"],["domain"]],[s.angularAxis,["endpadding"],["endPadding"]],[s.radialAxis,["showline"],["gridLinesVisible"]],[s.radialAxis,["tickorientation"],["tickOrientation"]],[s.radialAxis,["ticksuffix"],["ticksSuffix"]],[s.radialAxis,["range"],["domain"]],[s.font,["outlinecolor"],["outlineColor"]],[s.legend,["traceorder"],["reverseOrder"]],[s,["labeloffset"],["labelOffset"]],[s,["defaultcolorrange"],["defaultColorRange"]]].forEach(function(t,r){o.util.translator.apply(null,t.concat(e))}),e?("undefined"!=typeof s.tickLength&&(s.angularaxis.ticklen=s.tickLength,delete s.tickLength),s.tickColor&&(s.angularaxis.tickcolor=s.tickColor,delete s.tickColor)):(s.angularAxis&&"undefined"!=typeof s.angularAxis.ticklen&&(s.tickLength=s.angularAxis.ticklen),s.angularAxis&&"undefined"!=typeof s.angularAxis.tickcolor&&(s.tickColor=s.angularAxis.tickcolor)),s.legend&&"boolean"!=typeof s.legend.reverseOrder&&(s.legend.reverseOrder="normal"!=s.legend.reverseOrder),s.legend&&"boolean"==typeof s.legend.traceorder&&(s.legend.traceorder=s.legend.traceorder?"reversed":"normal",delete s.legend.reverseOrder),s.margin&&"undefined"!=typeof s.margin.t){var l=["t","r","b","l","pad"],c=["top","right","bottom","left","pad"],u={};n.entries(s.margin).forEach(function(t,e){u[c[l.indexOf(t.key)]]=t.value}),s.margin=u}e&&(delete s.needsEndSpacing,delete s.minorTickColor,delete s.minorTicks,delete s.angularaxis.ticksCount,delete s.angularaxis.ticksCount,delete s.angularaxis.ticksStep,delete s.angularaxis.rewriteTicks,delete s.angularaxis.nticks,delete s.radialaxis.ticksCount,delete s.radialaxis.ticksCount,delete s.radialaxis.ticksStep,delete s.radialaxis.rewriteTicks,delete s.radialaxis.nticks),r.layout=s}return r}};return t}},{"../../../constants/alignment":673,"../../../lib":701,d3:155}],820:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../../lib"),a=t("../../../components/color"),o=t("./micropolar"),s=t("./undo_manager"),l=i.extendDeepAll,c=e.exports={};c.framework=function(t){var e,r,i,a,u,h=new s;function f(r,s){return s&&(u=s),n.select(n.select(u).node().parentNode).selectAll(".svg-container>*:not(.chart-root)").remove(),e=e?l(e,r):r,i||(i=o.Axis()),a=o.adapter.plotly().convert(e),i.config(a).render(u),t.data=e.data,t.layout=e.layout,c.fillLayout(t),e}return f.isPolar=!0,f.svg=function(){return i.svg()},f.getConfig=function(){return e},f.getLiveConfig=function(){return o.adapter.plotly().convert(i.getLiveConfig(),!0)},f.getLiveScales=function(){return{t:i.angularScale(),r:i.radialScale()}},f.setUndoPoint=function(){var t,n,i=this,a=o.util.cloneJson(e);t=a,n=r,h.add({undo:function(){n&&i(n)},redo:function(){i(t)}}),r=o.util.cloneJson(a)},f.undo=function(){h.undo()},f.redo=function(){h.redo()},f},c.fillLayout=function(t){var e=n.select(t).selectAll(".plot-container"),r=e.selectAll(".svg-container"),i=t.framework&&t.framework.svg&&t.framework.svg(),o={width:800,height:600,paper_bgcolor:a.background,_container:e,_paperdiv:r,_paper:i};t._fullLayout=l(o,t.layout)}},{"../../../components/color":578,"../../../lib":701,"./micropolar":819,"./undo_manager":821,d3:155}],821:[function(t,e,r){"use strict";e.exports=function(){var t,e=[],r=-1,n=!1;function i(t,e){return t?(n=!0,t[e](),n=!1,this):this}return{add:function(t){return n?this:(e.splice(r+1,e.length-r),e.push(t),r=e.length-1,this)},setCallback:function(e){t=e},undo:function(){var n=e[r];return 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k=this.xOffset2=n.l+n.w*g[0],A=this.yOffset2=n.t+n.h*(1-v[1]),T=this.radius=p/x,M=this.innerRadius=e.hole*T,S=this.cx=k-T*y[0],L=this.cy=A+T*y[3],z=this.cxx=S-k,O=this.cyy=L-A;this.radialAxis=this.mockAxis(t,e,i,{_id:"x",side:{counterclockwise:"top",clockwise:"bottom"}[i.side],domain:[M/n.w,T/n.w]}),this.angularAxis=this.mockAxis(t,e,a,{side:"right",domain:[0,Math.PI],autorange:!1}),this.doAutoRange(t,e),this.updateAngularAxis(t,e),this.updateRadialAxis(t,e),this.updateRadialAxisTitle(t,e),this.xaxis=this.mockCartesianAxis(t,e,{_id:"x",domain:g}),this.yaxis=this.mockCartesianAxis(t,e,{_id:"y",domain:v});var I=this.pathSubplot();this.clipPaths.forTraces.select("path").attr("d",I).attr("transform",R(z,O)),r.frontplot.attr("transform",R(k,A)).call(l.setClipUrl,this._hasClipOnAxisFalse?null:this.clipIds.forTraces,this.gd),r.bg.attr("d",I).attr("transform",R(S,L)).call(s.fill,e.bgcolor)},O.mockAxis=function(t,e,r,n){var i=o.extendFlat({anchor:"free",position:0},r,n);return f(i,e,t),i},O.mockCartesianAxis=function(t,e,r){var n=this,i=r._id,a=o.extendFlat({type:"linear"},r);h(a,t);var s={x:[0,2],y:[1,3]};return a.setRange=function(){var t=n.sectorBBox,r=s[i],o=n.radialAxis._rl,l=(o[1]-o[0])/(1-e.hole);a.range=[t[r[0]]*l,t[r[1]]*l]},a.isPtWithinRange="x"===i?function(t){return n.isPtInside(t)}:function(){return!0},a.setRange(),a.setScale(),a},O.doAutoRange=function(t,e){var r=this.gd,n=this.radialAxis,i=e.radialaxis;n.setScale(),p(r,n);var a=n.range;i.range=a.slice(),i._input.range=a.slice(),n._rl=[n.r2l(a[0],null,"gregorian"),n.r2l(a[1],null,"gregorian")]},O.updateRadialAxis=function(t,e){var r=this,n=r.gd,i=r.layers,a=r.radius,l=r.innerRadius,c=r.cx,h=r.cy,f=e.radialaxis,p=E(e.sector[0],360),d=r.radialAxis,g=l90&&p<=270&&(d.tickangle=180);var v=function(t){return"translate("+(d.l2p(t.x)+l)+",0)"},m=I(f);if(r.radialTickLayout!==m&&(i["radial-axis"].selectAll(".xtick").remove(),r.radialTickLayout=m),g){d.setScale();var y=u.calcTicks(d),x=u.clipEnds(d,y),b=u.getTickSigns(d)[2];u.drawTicks(n,d,{vals:y,layer:i["radial-axis"],path:u.makeTickPath(d,0,b),transFn:v,crisp:!1}),u.drawGrid(n,d,{vals:x,layer:i["radial-grid"],path:function(t){return r.pathArc(d.r2p(t.x)+l)},transFn:o.noop,crisp:!1}),u.drawLabels(n,d,{vals:y,layer:i["radial-axis"],transFn:v,labelFns:u.makeLabelFns(d,0)})}var _=r.radialAxisAngle=r.vangles?L(D(C(f.angle),r.vangles)):f.angle,w=R(c,h),k=w+F(-_);P(i["radial-axis"],g&&(f.showticklabels||f.ticks),{transform:k}),P(i["radial-grid"],g&&f.showgrid,{transform:w}),P(i["radial-line"].select("line"),g&&f.showline,{x1:l,y1:0,x2:a,y2:0,transform:k}).attr("stroke-width",f.linewidth).call(s.stroke,f.linecolor)},O.updateRadialAxisTitle=function(t,e,r){var n=this.gd,i=this.radius,a=this.cx,o=this.cy,s=e.radialaxis,c=this.id+"title",u=void 0!==r?r:this.radialAxisAngle,h=C(u),f=Math.cos(h),p=Math.sin(h),d=0;if(s.title){var g=l.bBox(this.layers["radial-axis"].node()).height,v=s.title.font.size;d="counterclockwise"===s.side?-g-.4*v:g+.8*v}this.layers["radial-axis-title"]=m.draw(n,c,{propContainer:s,propName:this.id+".radialaxis.title",placeholder:S(n,"Click to enter radial axis title"),attributes:{x:a+i/2*f+d*p,y:o-i/2*p+d*f,"text-anchor":"middle"},transform:{rotate:-u}})},O.updateAngularAxis=function(t,e){var r=this,n=r.gd,i=r.layers,a=r.radius,l=r.innerRadius,c=r.cx,h=r.cy,f=e.angularaxis,p=r.angularAxis;r.fillViewInitialKey("angularaxis.rotation",f.rotation),p.setGeometry(),p.setScale();var d=function(t){return p.t2g(t.x)};"linear"===p.type&&"radians"===p.thetaunit&&(p.tick0=L(p.tick0),p.dtick=L(p.dtick));var g=function(t){return R(c+a*Math.cos(t),h-a*Math.sin(t))},v=u.makeLabelFns(p,0).labelStandoff,m={xFn:function(t){var e=d(t);return Math.cos(e)*v},yFn:function(t){var e=d(t),r=Math.sin(e)>0?.2:1;return-Math.sin(e)*(v+t.fontSize*r)+Math.abs(Math.cos(e))*(t.fontSize*A)},anchorFn:function(t){var e=d(t),r=Math.cos(e);return Math.abs(r)<.1?"middle":r>0?"start":"end"},heightFn:function(t,e,r){var n=d(t);return-.5*(1+Math.sin(n))*r}},y=I(f);r.angularTickLayout!==y&&(i["angular-axis"].selectAll("."+p._id+"tick").remove(),r.angularTickLayout=y);var x,b=u.calcTicks(p);if("linear"===e.gridshape?(x=b.map(d),o.angleDelta(x[0],x[1])<0&&(x=x.slice().reverse())):x=null,r.vangles=x,"category"===p.type&&(b=b.filter(function(t){return o.isAngleInsideSector(d(t),r.sectorInRad)})),p.visible){var _="inside"===p.ticks?-1:1,w=(p.linewidth||1)/2;u.drawTicks(n,p,{vals:b,layer:i["angular-axis"],path:"M"+_*w+",0h"+_*p.ticklen,transFn:function(t){var e=d(t);return g(e)+F(-L(e))},crisp:!1}),u.drawGrid(n,p,{vals:b,layer:i["angular-grid"],path:function(t){var e=d(t),r=Math.cos(e),n=Math.sin(e);return"M"+[c+l*r,h-l*n]+"L"+[c+a*r,h-a*n]},transFn:o.noop,crisp:!1}),u.drawLabels(n,p,{vals:b,layer:i["angular-axis"],repositionOnUpdate:!0,transFn:function(t){return 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n=t("../../components/colorscale/calc");e.exports=function(t,e){e.intensity&&n(t,e,{vals:e.intensity,containerStr:"",cLetter:"c"})}},{"../../components/colorscale/calc":586}],996:[function(t,e,r){"use strict";var n=t("gl-mesh3d"),i=t("delaunay-triangulate"),a=t("alpha-shape"),o=t("convex-hull"),s=t("../../lib/gl_format_color").parseColorScale,l=t("../../lib/str2rgbarray"),c=t("../../plots/gl3d/zip3");function u(t,e,r){this.scene=t,this.uid=r,this.mesh=e,this.name="",this.color="#fff",this.data=null,this.showContour=!1}var h=u.prototype;function f(t){for(var e=[],r=t.length,n=0;n=e-.5)return!1;return!0}h.handlePick=function(t){if(t.object===this.mesh){var e=t.index=t.data.index;t.traceCoordinate=[this.data.x[e],this.data.y[e],this.data.z[e]];var r=this.data.hovertext||this.data.text;return Array.isArray(r)&&void 0!==r[e]?t.textLabel=r[e]:r&&(t.textLabel=r),!0}},h.update=function(t){var e=this.scene,r=e.fullSceneLayout;this.data=t;var 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n=t("d3"),i=t("../../plot_api/plot_api"),a=t("../../components/fx"),o=t("../../lib"),s=t("../../components/drawing"),l=t("tinycolor2"),c=t("../../lib/svg_text_utils");function u(t,e,r,i){var a=t.map(function(t,e,r){var n,i=r[0],a=e.margin||{l:80,r:80,t:100,b:80},o=i.trace,s=o.domain,l=e.width,c=e.height,u=Math.floor(l*(s.x[1]-s.x[0])),h=Math.floor(c*(s.y[1]-s.y[0])),f=s.x[0]*l+a.l,p=e.height-s.y[1]*e.height+a.t,d=o.line.shape;n="all"===o.hoverinfo?["count","probability"]:(o.hoverinfo||"").split("+");var g={trace:o,key:o.uid,model:i,x:f,y:p,width:u,height:h,hoveron:o.hoveron,hoverinfoItems:n,arrangement:o.arrangement,bundlecolors:o.bundlecolors,sortpaths:o.sortpaths,labelfont:o.labelfont,categorylabelfont:o.tickfont,pathShape:d,dragDimension:null,margin:a,paths:[],dimensions:[],graphDiv:t,traceSelection:null,pathSelection:null,dimensionSelection:null};i.dimensions&&(R(g),P(g));return 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t.y}).attr("cursor",function(t){return"fixed"===t.parcatsViewModel.arrangement?"default":"perpendicular"===t.parcatsViewModel.arrangement?"ns-resize":"move"}),_(O),z.exit().remove(),T.append("text").attr("class","catlabel").attr("pointer-events","none");var I=e._fullLayout.paper_bgcolor;A.select("text.catlabel").attr("text-anchor",function(t){return f(t)?"start":"end"}).attr("alignment-baseline","middle").style("text-shadow",I+" -1px 1px 2px, "+I+" 1px 1px 2px, "+I+" 1px -1px 2px, "+I+" -1px -1px 2px").style("fill","rgb(0, 0, 0)").attr("x",function(t){return f(t)?t.width+5:-5}).attr("y",function(t){return t.height/2}).text(function(t){return t.model.categoryLabel}).each(function(t){s.font(n.select(this),t.parcatsViewModel.categorylabelfont),c.convertToTspans(n.select(this),e)}),T.append("text").attr("class","dimlabel"),A.select("text.dimlabel").attr("text-anchor","middle").attr("alignment-baseline","baseline").attr("cursor",function(t){return"fixed"===t.parcatsViewModel.arrangement?"default":"ew-resize"}).attr("x",function(t){return t.width/2}).attr("y",-5).text(function(t,e){return 0===e?t.parcatsViewModel.model.dimensions[t.model.dimensionInd].dimensionLabel:null}).each(function(t){s.font(n.select(this),t.parcatsViewModel.labelfont)}),A.selectAll("rect.bandrect").on("mouseover",M).on("mouseout",S),A.exit().remove(),k.call(n.behavior.drag().origin(function(t){return{x:t.x,y:0}}).on("dragstart",E).on("drag",C).on("dragend",L)),u.each(function(t){t.traceSelection=n.select(this),t.pathSelection=n.select(this).selectAll("g.paths").selectAll("path.path"),t.dimensionSelection=n.select(this).selectAll("g.dimensions").selectAll("g.dimension")}),u.exit().remove()}function h(t){return t.key}function f(t){var e=t.parcatsViewModel.dimensions.length,r=t.parcatsViewModel.dimensions[e-1].model.dimensionInd;return t.model.dimensionInd===r}function p(t,e){return t.model.rawColor>e.model.rawColor?1:t.model.rawColor"),S=n.mouse(u)[0];a.loneHover({trace:h,x:y-p.left+d.left,y:b-p.top+d.top,text:M,color:t.model.color,borderColor:"black",fontFamily:'Monaco, "Courier New", 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e=t.parcatsViewModel;if(!e.dragDimension&&(y(e.pathSelection),b(e.dimensionSelection.selectAll("g.category")),_(e.dimensionSelection.selectAll("g.category").selectAll("rect.bandrect")),a.loneUnhover(e.graphDiv._fullLayout._hoverlayer.node()),e.pathSelection.sort(p),-1===e.hoverinfoItems.indexOf("skip"))){"color"===t.parcatsViewModel.hoveron?A(this,"plotly_unhover",n.event):k(this,"plotly_unhover",n.event)}}function E(t){"fixed"!==t.parcatsViewModel.arrangement&&(t.dragDimensionDisplayInd=t.model.displayInd,t.initialDragDimensionDisplayInds=t.parcatsViewModel.model.dimensions.map(function(t){return t.displayInd}),t.dragHasMoved=!1,t.dragCategoryDisplayInd=null,n.select(this).selectAll("g.category").select("rect.catrect").each(function(e){var r=n.mouse(this)[0],i=n.mouse(this)[1];-2<=r&&r<=e.width+2&&-2<=i&&i<=e.height+2&&(t.dragCategoryDisplayInd=e.model.displayInd,t.initialDragCategoryDisplayInds=t.model.categories.map(function(t){return t.displayInd}),e.model.dragY=e.y,o.raiseToTop(this.parentNode),n.select(this.parentNode).selectAll("rect.bandrect").each(function(e){e.yh.y+h.height/2&&(o.model.displayInd=h.model.displayInd,h.model.displayInd=l),t.dragCategoryDisplayInd=o.model.displayInd}if(null===t.dragCategoryDisplayInd||"freeform"===t.parcatsViewModel.arrangement){a.model.dragX=n.event.x;var f=t.parcatsViewModel.dimensions[r],p=t.parcatsViewModel.dimensions[i];void 0!==f&&a.model.dragXp.x&&(a.model.displayInd=p.model.displayInd,p.model.displayInd=t.dragDimensionDisplayInd),t.dragDimensionDisplayInd=a.model.displayInd}R(t.parcatsViewModel),P(t.parcatsViewModel),I(t.parcatsViewModel),O(t.parcatsViewModel)}}function L(t){if("fixed"!==t.parcatsViewModel.arrangement&&null!==t.dragDimensionDisplayInd){n.select(this).selectAll("text").attr("font-weight","normal");var e={},r=z(t.parcatsViewModel),a=t.parcatsViewModel.model.dimensions.map(function(t){return t.displayInd}),o=t.initialDragDimensionDisplayInds.some(function(t,e){return t!==a[e]});o&&a.forEach(function(r,n){var i=t.parcatsViewModel.model.dimensions[n].containerInd;e["dimensions["+i+"].displayindex"]=r});var s=!1;if(null!==t.dragCategoryDisplayInd){var l=t.model.categories.map(function(t){return t.displayInd});if(s=t.initialDragCategoryDisplayInds.some(function(t,e){return t!==l[e]})){var c=t.model.categories.slice().sort(function(t,e){return t.displayInd-e.displayInd}),u=c.map(function(t){return t.categoryValue}),h=c.map(function(t){return t.categoryLabel});e["dimensions["+t.model.containerInd+"].categoryarray"]=[u],e["dimensions["+t.model.containerInd+"].ticktext"]=[h],e["dimensions["+t.model.containerInd+"].categoryorder"]="array"}}if(-1===t.parcatsViewModel.hoverinfoItems.indexOf("skip")&&!t.dragHasMoved&&t.potentialClickBand&&("color"===t.parcatsViewModel.hoveron?A(t.potentialClickBand,"plotly_click",n.event.sourceEvent):k(t.potentialClickBand,"plotly_click",n.event.sourceEvent)),t.model.dragX=null,null!==t.dragCategoryDisplayInd)t.parcatsViewModel.dimensions[t.dragDimensionDisplayInd].categories[t.dragCategoryDisplayInd].model.dragY=null,t.dragCategoryDisplayInd=null;t.dragDimensionDisplayInd=null,t.parcatsViewModel.dragDimension=null,t.dragHasMoved=null,t.potentialClickBand=null,R(t.parcatsViewModel),P(t.parcatsViewModel),n.transition().duration(300).ease("cubic-in-out").each(function(){I(t.parcatsViewModel,!0),O(t.parcatsViewModel,!0)}).each("end",function(){(o||s)&&i.restyle(t.parcatsViewModel.graphDiv,e,[r])})}}function z(t){for(var e,r=t.graphDiv._fullData,n=0;n=0;s--)u+="C"+c[s]+","+(e[s+1]+i)+" "+l[s]+","+(e[s]+i)+" "+(t[s]+r[s])+","+(e[s]+i),u+="l-"+r[s]+",0 ";return u+="Z"}function P(t){var e=t.dimensions,r=t.model,n=e.map(function(t){return t.categories.map(function(t){return t.y})}),i=t.model.dimensions.map(function(t){return t.categories.map(function(t){return t.displayInd})}),a=t.model.dimensions.map(function(t){return t.displayInd}),o=t.dimensions.map(function(t){return t.model.dimensionInd}),s=e.map(function(t){return t.x}),l=e.map(function(t){return t.width}),c=[];for(var u in r.paths)r.paths.hasOwnProperty(u)&&c.push(r.paths[u]);function h(t){var e=t.categoryInds.map(function(t,e){return i[e][t]});return o.map(function(t){return e[t]})}c.sort(function(e,r){var n=h(e),i=h(r);return"backward"===t.sortpaths&&(n.reverse(),i.reverse()),n.push(e.valueInds[0]),i.push(r.valueInds[0]),t.bundlecolors&&(n.unshift(e.rawColor),i.unshift(r.rawColor)),ni?1:0});for(var f=new Array(c.length),p=e[0].model.count,d=e[0].categories.map(function(t){return t.height}).reduce(function(t,e){return t+e}),g=0;g0?d*(m.count/p):0;for(var y,x=new Array(n.length),b=0;b1?(t.width-80-16)/(n-1):0)*i;var a,o,s,l,c,u=[],h=t.model.maxCats,f=e.categories.length,p=e.count,d=t.height-8*(h-1),g=8*(h-f)/2,v=e.categories.map(function(t){return{displayInd:t.displayInd,categoryInd:t.categoryInd}});for(v.sort(function(t,e){return t.displayInd-e.displayInd}),c=0;c0?o.count/p*d:0,s={key:o.valueInds[0],model:o,width:16,height:a,y:null!==o.dragY?o.dragY:g,bands:[],parcatsViewModel:t},g=g+a+8,u.push(s);return{key:e.dimensionInd,x:null!==e.dragX?e.dragX:r,y:0,width:16,model:e,categories:u,parcatsViewModel:t,dragCategoryDisplayInd:null,dragDimensionDisplayInd:null,initialDragDimensionDisplayInds:null,initialDragCategoryDisplayInds:null,dragHasMoved:null,potentialClickBand:null}}e.exports=function(t,e,r,n){u(r,t,n,e)}},{"../../components/drawing":599,"../../components/fx":617,"../../lib":701,"../../lib/svg_text_utils":725,"../../plot_api/plot_api":736,d3:155,tinycolor2:522}],1014:[function(t,e,r){"use strict";var n=t("./parcats");e.exports=function(t,e,r,i){var a=t._fullLayout,o=a._paper,s=a._size;n(t,o,e,{width:s.w,height:s.h,margin:{t:s.t,r:s.r,b:s.b,l:s.l}},r,i)}},{"./parcats":1013}],1015:[function(t,e,r){"use strict";var n=t("../../components/colorscale/attributes"),i=t("../../components/colorbar/attributes"),a=t("../../plots/cartesian/layout_attributes"),o=t("../../plots/font_attributes"),s=t("../../plots/domain").attributes,l=t("../../lib/extend").extendFlat,c=t("../../plot_api/plot_template").templatedArray;e.exports={domain:s({name:"parcoords",trace:!0,editType:"calc"}),labelfont:o({editType:"calc"}),tickfont:o({editType:"calc"}),rangefont:o({editType:"calc"}),dimensions:c("dimension",{label:{valType:"string",editType:"calc"},tickvals:l({},a.tickvals,{editType:"calc"}),ticktext:l({},a.ticktext,{editType:"calc"}),tickformat:{valType:"string",dflt:"3s",editType:"calc"},visible:{valType:"boolean",dflt:!0,editType:"calc"},range:{valType:"info_array",items:[{valType:"number",editType:"calc"},{valType:"number",editType:"calc"}],editType:"calc"},constraintrange:{valType:"info_array",freeLength:!0,dimensions:"1-2",items:[{valType:"number",editType:"calc"},{valType:"number",editType:"calc"}],editType:"calc"},multiselect:{valType:"boolean",dflt:!0,editType:"calc"},values:{valType:"data_array",editType:"calc"},editType:"calc"}),line:l(n("line",{colorscaleDflt:"Viridis",autoColorDflt:!1,editTypeOverride:"calc"}),{colorbar:i,editType:"calc"})}},{"../../components/colorbar/attributes":579,"../../components/colorscale/attributes":585,"../../lib/extend":691,"../../plot_api/plot_template":739,"../../plots/cartesian/layout_attributes":761,"../../plots/domain":774,"../../plots/font_attributes":775}],1016:[function(t,e,r){"use strict";var n=t("./constants"),i=t("d3"),a=t("../../lib/gup").keyFun,o=t("../../lib/gup").repeat,s=t("../../lib").sorterAsc,l=n.bar.snapRatio;function c(t,e){return t*(1-l)+e*l}var u=n.bar.snapClose;function h(t,e){return t*(1-u)+e*u}function f(t,e,r){if(d(e,r))return e;for(var n=t[0],i=n,a=1;a=0;a--){var o=t[a];if(e>h(n,o))return c(n,i);if(e>o||a===t.length-1)return c(o,n);i=n,n=o}}function d(t,e){for(var r=0;r=e[r][0]&&t<=e[r][1])return!0;return!1}function g(t){t.attr("x",-n.bar.captureWidth/2).attr("width",n.bar.captureWidth)}function v(t){t.attr("visibility","visible").style("visibility","visible").attr("fill","yellow").attr("opacity",0)}function m(t){if(!t.brush.filterSpecified)return"0,"+t.height;for(var e,r,n,i=y(t.brush.filter.getConsolidated(),t.height),a=[0],o=i.length?i[0][0]:null,s=0;se){f=r;break}}if(a=u,isNaN(a)&&(a=isNaN(h)||isNaN(f)?isNaN(h)?f:h:e-c[h][1]t[1]+r||e=.9*t[1]+.1*t[0]?"n":e<=.9*t[0]+.1*t[1]?"s":"ns"}(d,e);g&&(o.interval=l[a],o.intervalPix=d,o.region=g)}}if(t.ordinal&&!o.region){var v=t.unitTickvals,m=t.unitToPaddedPx.invert(e);for(r=0;r=x[0]&&m<=x[1]){o.clickableOrdinalRange=x;break}}}return o}function k(t){t.on("mousemove",function(t){if(i.event.preventDefault(),!t.parent.inBrushDrag){var e=w(t,t.height-i.mouse(this)[1]-2*n.verticalPadding),r="crosshair";e.clickableOrdinalRange?r="pointer":e.region&&(r=e.region+"-resize"),i.select(document.body).style("cursor",r)}}).on("mouseleave",function(t){t.parent.inBrushDrag||x()}).call(i.behavior.drag().on("dragstart",function(t){i.event.sourceEvent.stopPropagation();var e=t.height-i.mouse(this)[1]-2*n.verticalPadding,r=t.unitToPaddedPx.invert(e),a=t.brush,o=w(t,e),s=o.interval,l=a.svgBrush;if(l.wasDragged=!1,l.grabbingBar="ns"===o.region,l.grabbingBar){var c=s.map(t.unitToPaddedPx);l.grabPoint=e-c[0]-n.verticalPadding,l.barLength=c[1]-c[0]}l.clickableOrdinalRange=o.clickableOrdinalRange,l.stayingIntervals=t.multiselect&&a.filterSpecified?a.filter.getConsolidated():[],s&&(l.stayingIntervals=l.stayingIntervals.filter(function(t){return t[0]!==s[0]&&t[1]!==s[1]})),l.startExtent=o.region?s["s"===o.region?1:0]:r,t.parent.inBrushDrag=!0,l.brushStartCallback()}).on("drag",function(t){i.event.sourceEvent.stopPropagation();var e=t.height-i.mouse(this)[1]-2*n.verticalPadding,r=t.brush.svgBrush;r.wasDragged=!0,r.grabbingBar?r.newExtent=[e-r.grabPoint,e+r.barLength-r.grabPoint].map(t.unitToPaddedPx.invert):r.newExtent=[r.startExtent,t.unitToPaddedPx.invert(e)].sort(s);var a=Math.max(0,-r.newExtent[0]),o=Math.max(0,r.newExtent[1]-1);r.newExtent[0]+=a,r.newExtent[1]-=o,r.grabbingBar&&(r.newExtent[1]+=a,r.newExtent[0]-=o),t.brush.filterSpecified=!0,r.extent=r.stayingIntervals.concat([r.newExtent]),r.brushCallback(t),_(this.parentNode)}).on("dragend",function(t){i.event.sourceEvent.stopPropagation();var e=t.brush,r=e.filter,n=e.svgBrush,a=n.grabbingBar;if(n.grabbingBar=!1,n.grabLocation=void 0,t.parent.inBrushDrag=!1,x(),!n.wasDragged)return n.wasDragged=void 0,n.clickableOrdinalRange?e.filterSpecified&&t.multiselect?n.extent.push(n.clickableOrdinalRange):(n.extent=[n.clickableOrdinalRange],e.filterSpecified=!0):a?(n.extent=n.stayingIntervals,0===n.extent.length&&T(e)):T(e),n.brushCallback(t),_(this.parentNode),void n.brushEndCallback(e.filterSpecified?r.getConsolidated():[]);var o=function(){r.set(r.getConsolidated())};if(t.ordinal){var s=t.unitTickvals;s[s.length-1]n.newExtent[0];n.extent=n.stayingIntervals.concat(l?[n.newExtent]:[]),n.extent.length||T(e),n.brushCallback(t),l?_(this.parentNode,o):(o(),_(this.parentNode))}else o();n.brushEndCallback(e.filterSpecified?r.getConsolidated():[])}))}function A(t,e){return t[0]-e[0]}function T(t){t.filterSpecified=!1,t.svgBrush.extent=[[0,1]]}function M(t){for(var e,r=t.slice(),n=[],i=r.shift();i;){for(e=i.slice();(i=r.shift())&&i[0]<=e[1];)e[1]=Math.max(e[1],i[1]);n.push(e)}return n}e.exports={makeBrush:function(t,e,r,n,i,a){var o,l=function(){var t,e,r=[];return{set:function(n){r=n.map(function(t){return t.slice().sort(s)}).sort(A),t=M(r),e=r.reduce(function(t,e){return[Math.min(t[0],e[0]),Math.max(t[1],e[1])]},[1/0,-1/0])},get:function(){return r.slice()},getConsolidated:function(){return t},getBounds:function(){return e}}}();return l.set(r),{filter:l,filterSpecified:e,svgBrush:{extent:[],brushStartCallback:n,brushCallback:(o=i,function(t){var e=t.brush,r=function(t){return t.svgBrush.extent.map(function(t){return t.slice()})}(e).slice();e.filter.set(r),o()}),brushEndCallback:a}}},ensureAxisBrush:function(t){var e=t.selectAll("."+n.cn.axisBrush).data(o,a);e.enter().append("g").classed(n.cn.axisBrush,!0),function(t){var e=t.selectAll(".background").data(o);e.enter().append("rect").classed("background",!0).call(g).call(v).style("pointer-events","auto").attr("transform","translate(0 "+n.verticalPadding+")"),e.call(k).attr("height",function(t){return t.height-n.verticalPadding});var r=t.selectAll(".highlight-shadow").data(o);r.enter().append("line").classed("highlight-shadow",!0).attr("x",-n.bar.width/2).attr("stroke-width",n.bar.width+n.bar.strokeWidth).attr("stroke",n.bar.strokeColor).attr("opacity",n.bar.strokeOpacity).attr("stroke-linecap","butt"),r.attr("y1",function(t){return t.height}).call(b);var i=t.selectAll(".highlight").data(o);i.enter().append("line").classed("highlight",!0).attr("x",-n.bar.width/2).attr("stroke-width",n.bar.width-n.bar.strokeWidth).attr("stroke",n.bar.fillColor).attr("opacity",n.bar.fillOpacity).attr("stroke-linecap","butt"),i.attr("y1",function(t){return t.height}).call(b)}(e)},cleanRanges:function(t,e){if(Array.isArray(t[0])?(t=t.map(function(t){return t.sort(s)}),t=e.multiselect?M(t.sort(A)):[t[0]]):t=[t.sort(s)],e.tickvals){var r=e.tickvals.slice().sort(s);if(!(t=t.map(function(t){var e=[f(r,t[0],[]),p(r,t[1],[])];if(e[1]>e[0])return e}).filter(function(t){return t})).length)return}return t.length>1?t:t[0]}}},{"../../lib":701,"../../lib/gup":699,"./constants":1019,d3:155}],1017:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../plots/get_data").getModuleCalcData,a=t("./plot"),o=t("../../constants/xmlns_namespaces");r.name="parcoords",r.plot=function(t){var e=i(t.calcdata,"parcoords")[0];e.length&&a(t,e)},r.clean=function(t,e,r,n){var i=n._has&&n._has("parcoords"),a=e._has&&e._has("parcoords");i&&!a&&(n._paperdiv.selectAll(".parcoords").remove(),n._glimages.selectAll("*").remove())},r.toSVG=function(t){var e=t._fullLayout._glimages,r=n.select(t).selectAll(".svg-container");r.filter(function(t,e){return e===r.size()-1}).selectAll(".gl-canvas-context, .gl-canvas-focus").each(function(){var t=this.toDataURL("image/png");e.append("svg:image").attr({xmlns:o.svg,"xlink:href":t,preserveAspectRatio:"none",x:0,y:0,width:this.width,height:this.height})}),window.setTimeout(function(){n.selectAll("#filterBarPattern").attr("id","filterBarPattern")},60)}},{"../../constants/xmlns_namespaces":679,"../../plots/get_data":784,"./plot":1025,d3:155}],1018:[function(t,e,r){"use strict";var n=t("../../components/colorscale/helpers").hasColorscale,i=t("../../components/colorscale/calc"),a=t("../../lib"),o=t("../../lib/gup").wrap;function s(t){return a.isTypedArray(t)?Array.prototype.slice.call(t):t}e.exports=function(t,e){for(var r=0;ru&&(n.log("parcoords traces support up to "+u+" dimensions at the moment"),d.splice(u));var g=s(t,e,{name:"dimensions",handleItemDefaults:f}),v=function(t,e,r,o,s){var l=s("line.color",r);if(i(t,"line")&&n.isArrayOrTypedArray(l)){if(l.length)return s("line.colorscale"),a(t,e,o,s,{prefix:"line.",cLetter:"c"}),l.length;e.line.color=r}return 1/0}(t,e,r,c,p);o(e,c,p),Array.isArray(g)&&g.length||(e.visible=!1),h(e,g,"values",v);var m={family:c.font.family,size:Math.round(c.font.size/1.2),color:c.font.color};n.coerceFont(p,"labelfont",m),n.coerceFont(p,"tickfont",m),n.coerceFont(p,"rangefont",m)}},{"../../components/colorscale/defaults":588,"../../components/colorscale/helpers":589,"../../lib":701,"../../plots/array_container_defaults":745,"../../plots/domain":774,"./attributes":1015,"./axisbrush":1016,"./constants":1019,"./merge_length":1023}],1021:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.calc=t("./calc"),n.plot=t("./plot"),n.colorbar={container:"line",min:"cmin",max:"cmax"},n.moduleType="trace",n.name="parcoords",n.basePlotModule=t("./base_plot"),n.categories=["gl","regl","noOpacity","noHover"],n.meta={},e.exports=n},{"./attributes":1015,"./base_plot":1017,"./calc":1018,"./defaults":1020,"./plot":1025}],1022:[function(t,e,r){"use strict";var n=t("glslify"),i=n(["precision highp float;\n#define GLSLIFY 1\n\nattribute vec4 p0, p1, p2, p3,\n p4, p5, p6, p7,\n p8, p9, pa, pb,\n pc, pd, pe;\n\nattribute vec4 pf;\n\nuniform mat4 dim1A, dim2A, dim1B, dim2B, dim1C, dim2C, dim1D, dim2D,\n loA, hiA, loB, hiB, loC, hiC, loD, hiD;\n\nuniform vec2 resolution,\n viewBoxPosition,\n viewBoxSize;\n\nuniform sampler2D palette;\nuniform sampler2D mask;\nuniform float maskHeight;\n\nuniform vec2 colorClamp;\n\nvarying vec4 fragColor;\n\nvec4 unit_1 = vec4(1, 1, 1, 1);\n\nfloat val(mat4 p, mat4 v) {\n return dot(matrixCompMult(p, v) * unit_1, unit_1);\n}\n\nfloat axisY(\n float x,\n mat4 d[4],\n mat4 dim1A, mat4 dim2A, mat4 dim1B, mat4 dim2B, mat4 dim1C, mat4 dim2C, mat4 dim1D, mat4 dim2D\n ) {\n\n float y1 = val(d[0], dim1A) + val(d[1], dim1B) + val(d[2], dim1C) + val(d[3], dim1D);\n float y2 = val(d[0], dim2A) + val(d[1], dim2B) + val(d[2], dim2C) + val(d[3], dim2D);\n return y1 * (1.0 - x) + y2 * x;\n}\n\nconst int bitsPerByte = 8;\n\nint mod2(int a) {\n return a - 2 * (a / 2);\n}\n\nint mod8(int a) {\n return a - 8 * (a / 8);\n}\n\nvec4 zero = vec4(0, 0, 0, 0);\nvec4 unit_0 = vec4(1, 1, 1, 1);\nvec2 xyProjection = vec2(1, 1);\n\nmat4 mclamp(mat4 m, mat4 lo, mat4 hi) {\n return mat4(clamp(m[0], lo[0], hi[0]),\n clamp(m[1], lo[1], hi[1]),\n clamp(m[2], lo[2], hi[2]),\n clamp(m[3], lo[3], hi[3]));\n}\n\nbool mshow(mat4 p, mat4 lo, mat4 hi) {\n return mclamp(p, lo, hi) == p;\n}\n\nbool withinBoundingBox(\n mat4 d[4],\n mat4 loA, mat4 hiA, mat4 loB, mat4 hiB, mat4 loC, mat4 hiC, mat4 loD, mat4 hiD\n ) {\n\n return mshow(d[0], loA, hiA) &&\n mshow(d[1], loB, hiB) &&\n mshow(d[2], loC, hiC) &&\n mshow(d[3], loD, hiD);\n}\n\nbool withinRasterMask(mat4 d[4], sampler2D mask, float height) {\n bool result = true;\n int bitInByteStepper;\n float valY, valueY, scaleX;\n int hit, bitmask, valX;\n for(int i = 0; i < 4; i++) {\n for(int j = 0; j < 4; j++) {\n for(int k = 0; k < 4; k++) {\n bitInByteStepper = mod8(j * 4 + k);\n valX = i * 2 + j / 2;\n valY = d[i][j][k];\n valueY = valY * (height - 1.0) + 0.5;\n scaleX = (float(valX) + 0.5) / 8.0;\n hit = int(texture2D(mask, vec2(scaleX, (valueY + 0.5) / height))[3] * 255.0) / int(pow(2.0, float(bitInByteStepper)));\n result = result && mod2(hit) == 1;\n }\n }\n }\n return result;\n}\n\nvec4 position(\n float depth,\n vec2 resolution, vec2 viewBoxPosition, vec2 viewBoxSize,\n mat4 dims[4],\n float signum,\n mat4 dim1A, mat4 dim2A, mat4 dim1B, mat4 dim2B, mat4 dim1C, mat4 dim2C, mat4 dim1D, mat4 dim2D,\n mat4 loA, mat4 hiA, mat4 loB, mat4 hiB, mat4 loC, mat4 hiC, mat4 loD, mat4 hiD,\n sampler2D mask, float maskHeight\n ) {\n\n float x = 0.5 * signum + 0.5;\n float y = axisY(x, dims, dim1A, dim2A, dim1B, dim2B, dim1C, dim2C, dim1D, dim2D);\n\n float show = float(\n withinBoundingBox(dims, loA, hiA, loB, hiB, loC, hiC, loD, hiD)\n && withinRasterMask(dims, mask, maskHeight)\n );\n\n vec2 viewBoxXY = viewBoxPosition + viewBoxSize * vec2(x, y);\n float depthOrHide = depth + 2.0 * (1.0 - show);\n\n return vec4(\n xyProjection * (2.0 * viewBoxXY / resolution - 1.0),\n depthOrHide,\n 1.0\n );\n}\n\nvoid main() {\n\n float prominence = abs(pf[3]);\n\n mat4 p[4];\n p[0] = mat4(p0, p1, p2, p3);\n p[1] = mat4(p4, p5, p6, p7);\n p[2] = mat4(p8, p9, pa, pb);\n p[3] = mat4(pc, pd, pe, abs(pf));\n\n gl_Position = position(\n 1.0 - prominence,\n resolution, viewBoxPosition, viewBoxSize,\n p,\n sign(pf[3]),\n dim1A, dim2A, dim1B, dim2B, dim1C, dim2C, dim1D, dim2D,\n loA, hiA, loB, hiB, loC, hiC, loD, hiD,\n mask, maskHeight\n );\n\n float clampedColorIndex = clamp((prominence - colorClamp[0]) / (colorClamp[1] - colorClamp[0]), 0.0, 1.0);\n fragColor = texture2D(palette, vec2((clampedColorIndex * 255.0 + 0.5) / 256.0, 0.5));\n}\n"]),a=n(["precision highp float;\n#define GLSLIFY 1\n\nattribute vec4 p0, p1, p2, p3,\n p4, p5, p6, p7,\n p8, p9, pa, pb,\n pc, pd, pe;\n\nattribute vec4 pf;\n\nuniform mat4 dim1A, dim2A, dim1B, dim2B, dim1C, dim2C, dim1D, dim2D;\n\nuniform vec2 resolution,\n viewBoxPosition,\n viewBoxSize;\n\nuniform sampler2D palette;\n\nuniform vec2 colorClamp;\n\nvarying vec4 fragColor;\n\nvec2 xyProjection = vec2(1, 1);\n\nvec4 unit = vec4(1, 1, 1, 1);\n\nfloat val(mat4 p, mat4 v) {\n return dot(matrixCompMult(p, v) * unit, unit);\n}\n\nfloat axisY(\n float x,\n mat4 d[4],\n mat4 dim1A, mat4 dim2A, mat4 dim1B, mat4 dim2B, mat4 dim1C, mat4 dim2C, mat4 dim1D, mat4 dim2D\n ) {\n\n float y1 = val(d[0], dim1A) + val(d[1], dim1B) + val(d[2], dim1C) + val(d[3], dim1D);\n float y2 = val(d[0], dim2A) + val(d[1], dim2B) + val(d[2], dim2C) + val(d[3], dim2D);\n return y1 * (1.0 - x) + y2 * x;\n}\n\nvec4 position(\n float depth,\n vec2 resolution, vec2 viewBoxPosition, vec2 viewBoxSize,\n mat4 dims[4],\n float signum,\n mat4 dim1A, mat4 dim2A, mat4 dim1B, mat4 dim2B, mat4 dim1C, mat4 dim2C, mat4 dim1D, mat4 dim2D\n ) {\n\n float x = 0.5 * signum + 0.5;\n float y = axisY(x, dims, dim1A, dim2A, dim1B, dim2B, dim1C, dim2C, dim1D, dim2D);\n\n vec2 viewBoxXY = viewBoxPosition + viewBoxSize * vec2(x, y);\n\n return vec4(\n xyProjection * (2.0 * viewBoxXY / resolution - 1.0),\n depth,\n 1.0\n );\n}\n\nvoid main() {\n\n float prominence = abs(pf[3]);\n\n mat4 p[4];\n p[0] = mat4(p0, p1, p2, p3);\n p[1] = mat4(p4, p5, p6, p7);\n p[2] = mat4(p8, p9, pa, pb);\n p[3] = mat4(pc, pd, pe, abs(pf));\n\n gl_Position = position(\n 1.0 - prominence,\n resolution, viewBoxPosition, viewBoxSize,\n p,\n sign(pf[3]),\n dim1A, dim2A, dim1B, dim2B, dim1C, dim2C, dim1D, dim2D\n );\n\n float clampedColorIndex = clamp((prominence - colorClamp[0]) / (colorClamp[1] - colorClamp[0]), 0.0, 1.0);\n fragColor = texture2D(palette, vec2((clampedColorIndex * 255.0 + 0.5) / 256.0, 0.5));\n}\n"]),o=n(["precision highp float;\n#define GLSLIFY 1\n\nattribute vec4 p0, p1, p2, p3,\n p4, p5, p6, p7,\n p8, p9, pa, pb,\n pc, pd, pe;\n\nattribute vec4 pf;\n\nuniform mat4 dim1A, dim2A, dim1B, dim2B, dim1C, dim2C, dim1D, dim2D,\n loA, hiA, loB, hiB, loC, hiC, loD, hiD;\n\nuniform vec2 resolution,\n viewBoxPosition,\n viewBoxSize;\n\nuniform sampler2D mask;\nuniform float maskHeight;\n\nuniform vec2 colorClamp;\n\nvarying vec4 fragColor;\n\nvec4 unit_1 = vec4(1, 1, 1, 1);\n\nfloat val(mat4 p, mat4 v) {\n return dot(matrixCompMult(p, v) * unit_1, unit_1);\n}\n\nfloat axisY(\n float x,\n mat4 d[4],\n mat4 dim1A, mat4 dim2A, mat4 dim1B, mat4 dim2B, mat4 dim1C, mat4 dim2C, mat4 dim1D, mat4 dim2D\n ) {\n\n float y1 = val(d[0], dim1A) + val(d[1], dim1B) + val(d[2], dim1C) + val(d[3], dim1D);\n float y2 = val(d[0], dim2A) + val(d[1], dim2B) + val(d[2], dim2C) + val(d[3], dim2D);\n return y1 * (1.0 - x) + y2 * x;\n}\n\nconst int bitsPerByte = 8;\n\nint mod2(int a) {\n return a - 2 * (a / 2);\n}\n\nint mod8(int a) {\n return a - 8 * (a / 8);\n}\n\nvec4 zero = vec4(0, 0, 0, 0);\nvec4 unit_0 = vec4(1, 1, 1, 1);\nvec2 xyProjection = vec2(1, 1);\n\nmat4 mclamp(mat4 m, mat4 lo, mat4 hi) {\n return mat4(clamp(m[0], lo[0], hi[0]),\n clamp(m[1], lo[1], hi[1]),\n clamp(m[2], lo[2], hi[2]),\n clamp(m[3], lo[3], hi[3]));\n}\n\nbool mshow(mat4 p, mat4 lo, mat4 hi) {\n return mclamp(p, lo, hi) == p;\n}\n\nbool withinBoundingBox(\n mat4 d[4],\n mat4 loA, mat4 hiA, mat4 loB, mat4 hiB, mat4 loC, mat4 hiC, mat4 loD, mat4 hiD\n ) {\n\n return mshow(d[0], loA, hiA) &&\n mshow(d[1], loB, hiB) &&\n mshow(d[2], loC, hiC) &&\n mshow(d[3], loD, hiD);\n}\n\nbool withinRasterMask(mat4 d[4], sampler2D mask, float height) {\n bool result = true;\n int bitInByteStepper;\n float valY, valueY, scaleX;\n int hit, bitmask, valX;\n for(int i = 0; i < 4; i++) {\n for(int j = 0; j < 4; j++) {\n for(int k = 0; k < 4; k++) {\n bitInByteStepper = mod8(j * 4 + k);\n valX = i * 2 + j / 2;\n valY = d[i][j][k];\n valueY = valY * (height - 1.0) + 0.5;\n scaleX = (float(valX) + 0.5) / 8.0;\n hit = int(texture2D(mask, vec2(scaleX, (valueY + 0.5) / height))[3] * 255.0) / int(pow(2.0, float(bitInByteStepper)));\n result = result && mod2(hit) == 1;\n }\n }\n }\n return result;\n}\n\nvec4 position(\n float depth,\n vec2 resolution, vec2 viewBoxPosition, vec2 viewBoxSize,\n mat4 dims[4],\n float signum,\n mat4 dim1A, mat4 dim2A, mat4 dim1B, mat4 dim2B, mat4 dim1C, mat4 dim2C, mat4 dim1D, mat4 dim2D,\n mat4 loA, mat4 hiA, mat4 loB, mat4 hiB, mat4 loC, mat4 hiC, mat4 loD, mat4 hiD,\n sampler2D mask, float maskHeight\n ) {\n\n float x = 0.5 * signum + 0.5;\n float y = axisY(x, dims, dim1A, dim2A, dim1B, dim2B, dim1C, dim2C, dim1D, dim2D);\n\n float show = float(\n withinBoundingBox(dims, loA, hiA, loB, hiB, loC, hiC, loD, hiD)\n && withinRasterMask(dims, mask, maskHeight)\n );\n\n vec2 viewBoxXY = viewBoxPosition + viewBoxSize * vec2(x, y);\n float depthOrHide = depth + 2.0 * (1.0 - show);\n\n return vec4(\n xyProjection * (2.0 * viewBoxXY / resolution - 1.0),\n depthOrHide,\n 1.0\n );\n}\n\nvoid main() {\n\n float prominence = abs(pf[3]);\n\n mat4 p[4];\n p[0] = mat4(p0, p1, p2, p3);\n p[1] = mat4(p4, p5, p6, p7);\n p[2] = mat4(p8, p9, pa, pb);\n p[3] = mat4(pc, pd, pe, abs(pf));\n\n gl_Position = position(\n 1.0 - prominence,\n resolution, viewBoxPosition, viewBoxSize,\n p,\n sign(pf[3]),\n dim1A, dim2A, dim1B, dim2B, dim1C, dim2C, dim1D, dim2D,\n loA, hiA, loB, hiB, loC, hiC, loD, hiD,\n mask, maskHeight\n );\n\n fragColor = vec4(pf.rgb, 1.0);\n}\n"]),s=n(["precision lowp float;\n#define GLSLIFY 1\n\nvarying vec4 fragColor;\n\nvoid main() {\n gl_FragColor = fragColor;\n}\n"]),l=t("../../lib"),c=1e-6,u=1e-7,h=2048,f=64,p=2,d=4,g=8,v=f/g,m=[119,119,119],y=new Uint8Array(4),x=new Uint8Array(4),b={shape:[256,1],format:"rgba",type:"uint8",mag:"nearest",min:"nearest"};function _(t,e,r,n,i){var a=t._gl;a.enable(a.SCISSOR_TEST),a.scissor(e,r,n,i),t.clear({color:[0,0,0,0],depth:1})}function w(t,e,r,n,i,a){var o=a.key;r.drawCompleted||(!function(t){t.read({x:0,y:0,width:1,height:1,data:y})}(t),r.drawCompleted=!0),function s(l){var c;c=Math.min(n,i-l*n),a.offset=p*l*n,a.count=p*c,0===l&&(window.cancelAnimationFrame(r.currentRafs[o]),delete r.currentRafs[o],_(t,a.scissorX,a.scissorY,a.scissorWidth,a.viewBoxSize[1])),r.clearOnly||(e(a),l*n+c>>8*e)%256/255}function A(t,e,r){var n,i,a,o=[];for(i=0;i=f-4?k(o,f-2-s):.5);return a}(d,p,i);!function(t,e,r){for(var n=0;n<16;n++)t["p"+n.toString(16)](A(e,r,n))}(C,d,o),L=S.texture(l.extendFlat({data:function(t,e,r){for(var n=[],i=0;i<256;i++){var a=t(i/255);n.push((e?m:a).concat(r))}return n}(r.unitToColor,T,Math.round(255*(T?a:1)))},b))}var I=[0,1];var D=[];function P(t,e,n,i,a,o,s,c,u,h,f){var p,d,g,v,m=[t,e],y=[0,1].map(function(){return[0,1,2,3].map(function(){return new Float32Array(16)})});for(p=0;p<2;p++)for(v=m[p],d=0;d<4;d++)for(g=0;g<16;g++)y[p][d][g]=g+16*d===v?1:0;var x=r.lines.canvasOverdrag,b=r.domain,_=r.canvasWidth,w=r.canvasHeight;return l.extendFlat({key:s,resolution:[_,w],viewBoxPosition:[n+x,i],viewBoxSize:[a,o],i:t,ii:e,dim1A:y[0][0],dim1B:y[0][1],dim1C:y[0][2],dim1D:y[0][3],dim2A:y[1][0],dim2B:y[1][1],dim2C:y[1][2],dim2D:y[1][3],colorClamp:I,scissorX:(c===u?0:n+x)+(r.pad.l-x)+r.layoutWidth*b.x[0],scissorWidth:(c===h?_-n+x:a+.5)+(c===u?n+x:0),scissorY:i+r.pad.b+r.layoutHeight*b.y[0],scissorHeight:o,viewportX:r.pad.l-x+r.layoutWidth*b.x[0],viewportY:r.pad.b+r.layoutHeight*b.y[0],viewportWidth:_,viewportHeight:w},f)}return{setColorDomain:function(t){I[0]=t[0],I[1]=t[1]},render:function(t,e,n){var i,a,o,s=t.length,l=1/0,c=-1/0;for(i=0;ic&&(c=t[i].dim2.canvasX,o=i),t[i].dim1.canvasXa._length&&(A=A.slice(0,a._length));var T,M=a.tickvals;function S(t,e){return{val:t,text:T[e]}}function E(t,e){return t.val-e.val}if(Array.isArray(M)&&M.length){T=a.ticktext,Array.isArray(T)&&T.length?T.length>M.length?T=T.slice(0,M.length):M.length>T.length&&(M=M.slice(0,T.length)):T=M.map(n.format(a.tickformat));for(var C=1;C=r||s>=i)return;var l=t.lineLayer.readPixel(o,i-1-s),c=0!==l[3],u=c?l[2]+256*(l[1]+256*l[0]):null,h={x:o,y:s,clientX:e.clientX,clientY:e.clientY,dataIndex:t.model.key,curveNumber:u};u!==A&&(c?d.hover(h):d.unhover&&d.unhover(h),A=u)}}),k.style("opacity",function(t){return t.pick?.01:1}),e.style("background","rgba(255, 255, 255, 0)");var T=e.selectAll("."+h.cn.parcoords).data(w,l);T.exit().remove(),T.enter().append("g").classed(h.cn.parcoords,!0).style("shape-rendering","crispEdges").style("pointer-events","none"),T.attr("transform",function(t){return"translate("+t.model.translateX+","+t.model.translateY+")"});var M=T.selectAll("."+h.cn.parcoordsControlView).data(c,l);M.enter().append("g").classed(h.cn.parcoordsControlView,!0),M.attr("transform",function(t){return"translate("+t.model.pad.l+","+t.model.pad.t+")"});var S=M.selectAll("."+h.cn.yAxis).data(function(t){return t.dimensions},l);function E(t,e){for(var r=e.panels||(e.panels=[]),n=t.data(),i=n.length-1,a=0;aline").attr("fill","none").attr("stroke","black").attr("stroke-opacity",.25).attr("stroke-width","1px"),L.selectAll("text").style("text-shadow","1px 1px 1px #fff, -1px -1px 1px #fff, 1px -1px 1px #fff, -1px 1px 1px #fff").style("cursor","default").style("user-select","none");var z=C.selectAll("."+h.cn.axisHeading).data(c,l);z.enter().append("g").classed(h.cn.axisHeading,!0);var O=z.selectAll("."+h.cn.axisTitle).data(c,l);O.enter().append("text").classed(h.cn.axisTitle,!0).attr("text-anchor","middle").style("cursor","ew-resize").style("user-select","none").style("pointer-events","auto"),O.attr("transform","translate(0,"+-h.axisTitleOffset+")").text(function(t){return t.label}).each(function(t){a.font(n.select(this),t.model.labelFont)});var I=C.selectAll("."+h.cn.axisExtent).data(c,l);I.enter().append("g").classed(h.cn.axisExtent,!0);var D=I.selectAll("."+h.cn.axisExtentTop).data(c,l);D.enter().append("g").classed(h.cn.axisExtentTop,!0),D.attr("transform","translate(0,"+-h.axisExtentOffset+")");var P=D.selectAll("."+h.cn.axisExtentTopText).data(c,l);function R(t,e){if(t.ordinal)return"";var r=t.domainScale.domain();return n.format(t.tickFormat)(r[e?r.length-1:0])}P.enter().append("text").classed(h.cn.axisExtentTopText,!0).call(x),P.text(function(t){return R(t,!0)}).each(function(t){a.font(n.select(this),t.model.rangeFont)});var F=I.selectAll("."+h.cn.axisExtentBottom).data(c,l);F.enter().append("g").classed(h.cn.axisExtentBottom,!0),F.attr("transform",function(t){return"translate(0,"+(t.model.height+h.axisExtentOffset)+")"});var B=F.selectAll("."+h.cn.axisExtentBottomText).data(c,l);B.enter().append("text").classed(h.cn.axisExtentBottomText,!0).attr("dy","0.75em").call(x),B.text(function(t){return R(t)}).each(function(t){a.font(n.select(this),t.model.rangeFont)}),f.ensureAxisBrush(C)}},{"../../components/colorscale":590,"../../components/drawing":599,"../../lib":701,"../../lib/gup":699,"./axisbrush":1016,"./constants":1019,"./lines":1022,d3:155}],1025:[function(t,e,r){"use strict";var n=t("./parcoords"),i=t("../../lib/prepare_regl");e.exports=function(t,e){var r=t._fullLayout,a=r._toppaper,o=r._paperdiv,s=r._glcontainer;if(i(t)){var l={},c={},u={},h={},f=r._size;e.forEach(function(e,r){var n=e[0].trace;u[r]=n.index;var i=h[r]=n._fullInput.index;l[r]=t.data[i].dimensions,c[r]=t.data[i].dimensions.slice()});n(o,a,s,e,{width:f.w,height:f.h,margin:{t:f.t,r:f.r,b:f.b,l:f.l}},{filterChanged:function(e,n,i){var a=c[e][n],o=i.map(function(t){return t.slice()}),s="dimensions["+n+"].constraintrange",l=r._tracePreGUI[t._fullData[u[e]]._fullInput.uid];if(void 0===l[s]){var f=a.constraintrange;l[s]=f||null}var p=t._fullData[u[e]].dimensions[n];o.length?(1===o.length&&(o=o[0]),a.constraintrange=o,p.constraintrange=o.slice(),o=[o]):(delete a.constraintrange,delete p.constraintrange,o=null);var d={};d[s]=o,t.emit("plotly_restyle",[d,[h[e]]])},hover:function(e){t.emit("plotly_hover",e)},unhover:function(e){t.emit("plotly_unhover",e)},axesMoved:function(e,r){function n(t){return!("visible"in t)||t.visible}function i(t,e,r){var n=e.indexOf(r),i=t.indexOf(n);return-1===i&&(i+=e.length),i}var a=function(t){return function(e,n){return 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n=t("../../components/color/attributes"),i=t("../../plots/font_attributes"),a=t("../../plots/attributes"),o=t("../../components/fx/hovertemplate_attributes"),s=t("../../plots/domain").attributes,l=t("../../lib/extend").extendFlat,c=i({editType:"calc",arrayOk:!0,colorEditType:"plot"});e.exports={labels:{valType:"data_array",editType:"calc"},label0:{valType:"number",dflt:0,editType:"calc"},dlabel:{valType:"number",dflt:1,editType:"calc"},values:{valType:"data_array",editType:"calc"},marker:{colors:{valType:"data_array",editType:"calc"},line:{color:{valType:"color",dflt:n.defaultLine,arrayOk:!0,editType:"style"},width:{valType:"number",min:0,dflt:0,arrayOk:!0,editType:"style"},editType:"calc"},editType:"calc"},text:{valType:"data_array",editType:"calc"},hovertext:{valType:"string",dflt:"",arrayOk:!0,editType:"style"},scalegroup:{valType:"string",dflt:"",editType:"calc"},textinfo:{valType:"flaglist",flags:["label","text","value","percent"],extras:["none"],editType:"calc"},hoverinfo:l({},a.hoverinfo,{flags:["label","text","value","percent","name"]}),hovertemplate:o({},{keys:["label","color","value","percent","text"]}),textposition:{valType:"enumerated",values:["inside","outside","auto","none"],dflt:"auto",arrayOk:!0,editType:"calc"},textfont:l({},c,{}),insidetextfont:l({},c,{}),outsidetextfont:l({},c,{}),title:{text:{valType:"string",dflt:"",editType:"calc"},font:l({},c,{}),position:{valType:"enumerated",values:["top 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g},crossTraceCalc:function(t){var e=t._fullLayout,r=t.calcdata,n=e.piecolorway,i=e._piecolormap;e.extendpiecolors&&(n=u(n,l));for(var a=0,o=0;o"),name:h.hovertemplate||-1!==f.indexOf("name")?h.name:void 0,idealAlign:t.pxmid[0]<0?"left":"right",color:c.castOption(x.bgcolor,t.pts)||t.color,borderColor:c.castOption(x.bordercolor,t.pts),fontFamily:c.castOption(b.family,t.pts),fontSize:c.castOption(b.size,t.pts),fontColor:c.castOption(b.color,t.pts),nameLength:c.castOption(x.namelength,t.pts),textAlign:c.castOption(x.align,t.pts),hovertemplate:c.castOption(h.hovertemplate,t.pts),hovertemplateLabels:t,eventData:[u(t,h)]},{container:r._hoverlayer.node(),outerContainer:r._paper.node(),gd:e}),o._hasHoverLabel=!0}o._hasHoverEvent=!0,e.emit("plotly_hover",{points:[u(t,h)],event:n.event})}}),t.on("mouseout",function(t){var r=e._fullLayout,a=e._fullData[o.index],s=n.select(this).datum();o._hasHoverEvent&&(t.originalEvent=n.event,e.emit("plotly_unhover",{points:[u(s,a)],event:n.event}),o._hasHoverEvent=!1),o._hasHoverLabel&&(i.loneUnhover(r._hoverlayer.node()),o._hasHoverLabel=!1)}),t.on("click",function(t){var r=e._fullLayout,a=e._fullData[o.index];e._dragging||!1===r.hovermode||(e._hoverdata=[u(t,a)],i.click(e,n.event))})}function f(t,e,r){var n=Math.sqrt(t.width*t.width+t.height*t.height),i=t.width/t.height,a=e.halfangle,o=e.ring,s=e.rInscribed,l=r.r||e.rpx1,c={scale:s*l*2/n,rCenter:1-s,rotate:0};if(c.scale>=1)return c;var 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r,n,i=e._fullLayout,a=0;ai.vTotal/2?1:0,r.halfangle=Math.PI*Math.min(r.v/i.vTotal,.5),r.ring=1-a.hole,r.rInscribed=p(r,i))}(e),i.attr("stroke-linejoin","round"),i.each(function(){var i=n.select(this).selectAll("g.slice").data(e);i.enter().append("g").classed("slice",!0),i.exit().remove();var p=[[[],[]],[[],[]]],y=!1;i.each(function(r){if(r.hidden)n.select(this).selectAll("path,g").remove();else{r.pointNumber=r.i,r.curveNumber=m.index,p[r.pxmid[1]<0?0:1][r.pxmid[0]<0?0:1].push(r);var i=u.cx,g=u.cy,v=n.select(this),x=v.selectAll("path.surface").data([r]);if(x.enter().append("path").classed("surface",!0).style({"pointer-events":"all"}),v.call(h,t,e),m.pull){var b=+c.castOption(m.pull,r.pts)||0;b>0&&(i+=b*r.pxmid[0],g+=b*r.pxmid[1])}r.cxFinal=i,r.cyFinal=g;var _=m.hole;if(r.v===u.vTotal){var w="M"+(i+r.px0[0])+","+(g+r.px0[1])+S(r.px0,r.pxmid,!0,1)+S(r.pxmid,r.px0,!0,1)+"Z";_?x.attr("d","M"+(i+_*r.px0[0])+","+(g+_*r.px0[1])+S(r.px0,r.pxmid,!1,_)+S(r.pxmid,r.px0,!1,_)+"Z"+w):x.attr("d",w)}else{var k=S(r.px0,r.px1,!0,1);if(_){var A=1-_;x.attr("d","M"+(i+_*r.px1[0])+","+(g+_*r.px1[1])+S(r.px1,r.px0,!1,_)+"l"+A*r.px0[0]+","+A*r.px0[1]+k+"Z")}else x.attr("d","M"+i+","+g+"l"+r.px0[0]+","+r.px0[1]+k+"Z")}var T=c.castOption(m.textposition,r.pts),M=v.selectAll("g.slicetext").data(r.text&&"none"!==T?[0]:[]);M.enter().append("g").classed("slicetext",!0),M.exit().remove(),M.each(function(){var e=s.ensureSingle(n.select(this),"text","",function(t){t.attr("data-notex",1)});e.text(r.text).attr({class:"slicetext",transform:"","text-anchor":"middle"}).call(o.font,"outside"===T?function(t,e,r){var n=c.castOption(t.outsidetextfont.color,e.pts)||c.castOption(t.textfont.color,e.pts)||r.color,i=c.castOption(t.outsidetextfont.family,e.pts)||c.castOption(t.textfont.family,e.pts)||r.family,a=c.castOption(t.outsidetextfont.size,e.pts)||c.castOption(t.textfont.size,e.pts)||r.size;return{color:n,family:i,size:a}}(m,r,t._fullLayout.font):function(t,e,r){var n=c.castOption(t.insidetextfont.color,e.pts);!n&&t._input.textfont&&(n=c.castOption(t._input.textfont.color,e.pts));var i=c.castOption(t.insidetextfont.family,e.pts)||c.castOption(t.textfont.family,e.pts)||r.family,o=c.castOption(t.insidetextfont.size,e.pts)||c.castOption(t.textfont.size,e.pts)||r.size;return{color:n||a.contrast(e.color),family:i,size:o}}(m,r,t._fullLayout.font)).call(l.convertToTspans,t);var 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i,u,h,p,d,g,v=r.labelExtraY+(n?r.yLabelMax:r.yLabelMin),m=n?t.yLabelMin:t.yLabelMax,y=n?t.yLabelMax:t.yLabelMin,x=t.cyFinal+o(t.px0[1],t.px1[1]),b=v-m;if(b*l>0&&(t.labelExtraY=b),Array.isArray(e.pull))for(u=0;u=(c.castOption(e.pull,h.pts)||0)||((t.pxmid[1]-h.pxmid[1])*l>0?(p=h.cyFinal+o(h.px0[1],h.px1[1]),(b=p-m-t.labelExtraY)*l>0&&(t.labelExtraY+=b)):(y+t.labelExtraY-x)*l>0&&(i=3*s*Math.abs(u-f.indexOf(t)),d=h.cxFinal+a(h.px0[0],h.px1[0]),(g=d+i-(t.cxFinal+t.pxmid[0])-t.labelExtraX)*s>0&&(t.labelExtraX+=g)))}for(n=0;n<2;n++)for(i=n?v:m,o=n?Math.max:Math.min,l=n?1:-1,r=0;r<2;r++){for(a=r?Math.max:Math.min,s=r?1:-1,(u=t[n][r]).sort(i),h=t[1-n][r],f=h.concat(u),d=[],p=0;pMath.abs(f)?c+="l"+f*t.pxmid[0]/t.pxmid[1]+","+f+"H"+(o+t.labelExtraX+u):c+="l"+t.labelExtraX+","+h+"v"+(f-h)+"h"+u}else c+="V"+(t.yLabelMid+t.labelExtraY)+"h"+u;s.ensureSingle(r,"path","textline").call(a.stroke,e.outsidetextfont.color).attr({"stroke-width":Math.min(2,e.outsidetextfont.size/8),d:c,fill:"none"})}else 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a=r.marker.line,o=i(a.color,e.pts)||n.defaultLine,s=i(a.width,e.pts)||0;t.style("stroke-width",s).call(n.fill,e.color).call(n.stroke,o)}},{"../../components/color":578,"./helpers":1031}],1038:[function(t,e,r){"use strict";var n=t("../scatter/attributes");e.exports={x:n.x,y:n.y,xy:{valType:"data_array",editType:"calc"},indices:{valType:"data_array",editType:"calc"},xbounds:{valType:"data_array",editType:"calc"},ybounds:{valType:"data_array",editType:"calc"},text:n.text,marker:{color:{valType:"color",arrayOk:!1,editType:"calc"},opacity:{valType:"number",min:0,max:1,dflt:1,arrayOk:!1,editType:"calc"},blend:{valType:"boolean",dflt:null,editType:"calc"},sizemin:{valType:"number",min:.1,max:2,dflt:.5,editType:"calc"},sizemax:{valType:"number",min:.1,dflt:20,editType:"calc"},border:{color:{valType:"color",arrayOk:!1,editType:"calc"},arearatio:{valType:"number",min:0,max:1,dflt:0,editType:"calc"},editType:"calc"},editType:"calc"},transforms:void 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e=this.idToIndex[t.pointId];return{trace:this,dataCoord:t.dataCoord,traceCoord:this.pickXYData?[this.pickXYData[2*e],this.pickXYData[2*e+1]]:[this.pickXData[e],this.pickYData[e]],textLabel:Array.isArray(this.textLabels)?this.textLabels[e]:this.textLabels,color:this.color,name:this.name,pointIndex:e,hoverinfo:this.hoverinfo}},l.update=function(t){this.index=t.index,this.textLabels=t.text,this.name=t.name,this.hoverinfo=t.hoverinfo,this.bounds=[1/0,1/0,-1/0,-1/0],this.updateFast(t),this.color=o(t,{})},l.updateFast=function(t){var e,r,n,o,s,l,c=this.xData=this.pickXData=t.x,u=this.yData=this.pickYData=t.y,h=this.pickXYData=t.xy,f=t.xbounds&&t.ybounds,p=t.indices,d=this.bounds;if(h){if(n=h,e=h.length>>>1,f)d[0]=t.xbounds[0],d[2]=t.xbounds[1],d[1]=t.ybounds[0],d[3]=t.ybounds[1];else for(l=0;ld[2]&&(d[2]=o),sd[3]&&(d[3]=s);if(p)r=p;else for(r=new Int32Array(e),l=0;ld[2]&&(d[2]=o),sd[3]&&(d[3]=s);this.idToIndex=r,this.pointcloudOptions.idToIndex=r,this.pointcloudOptions.positions=n;var g=i(t.marker.color),v=i(t.marker.border.color),m=t.opacity*t.marker.opacity;g[3]*=m,this.pointcloudOptions.color=g;var y=t.marker.blend;if(null===y){y=c.length<100||u.length<100}this.pointcloudOptions.blend=y,v[3]*=m,this.pointcloudOptions.borderColor=v;var x=t.marker.sizemin,b=Math.max(t.marker.sizemax,t.marker.sizemin);this.pointcloudOptions.sizeMin=x,this.pointcloudOptions.sizeMax=b,this.pointcloudOptions.areaRatio=t.marker.border.arearatio,this.pointcloud.update(this.pointcloudOptions);var _=this.scene.xaxis,w=this.scene.yaxis,k=b/2||.5;t._extremes[_._id]=a(_,[d[0],d[2]],{ppad:k}),t._extremes[w._id]=a(w,[d[1],d[3]],{ppad:k})},l.dispose=function(){this.pointcloud.dispose()},e.exports=function(t,e){var r=new s(t,e.uid);return r.update(e),r}},{"../../lib/str2rgbarray":724,"../../plots/cartesian/autorange":748,"../scatter/get_trace_color":1062,"gl-pointcloud2d":289}],1040:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./attributes");e.exports=function(t,e,r){function a(r,a){return n.coerce(t,e,i,r,a)}a("x"),a("y"),a("xbounds"),a("ybounds"),t.xy&&t.xy instanceof Float32Array&&(e.xy=t.xy),t.indices&&t.indices instanceof Int32Array&&(e.indices=t.indices),a("text"),a("marker.color",r),a("marker.opacity"),a("marker.blend"),a("marker.sizemin"),a("marker.sizemax"),a("marker.border.color",r),a("marker.border.arearatio"),e._length=null}},{"../../lib":701,"./attributes":1038}],1041:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.calc=t("../scatter3d/calc"),n.plot=t("./convert"),n.moduleType="trace",n.name="pointcloud",n.basePlotModule=t("../../plots/gl2d"),n.categories=["gl","gl2d","showLegend"],n.meta={},e.exports=n},{"../../plots/gl2d":787,"../scatter3d/calc":1080,"./attributes":1038,"./convert":1039,"./defaults":1040}],1042:[function(t,e,r){"use strict";var n=t("../../plots/font_attributes"),i=t("../../plots/attributes"),a=t("../../components/color/attributes"),o=t("../../components/fx/attributes"),s=t("../../plots/domain").attributes,l=t("../../components/fx/hovertemplate_attributes"),c=t("../../components/colorscale/attributes"),u=t("../../plot_api/plot_template").templatedArray,h=t("../../lib/extend").extendFlat,f=t("../../plot_api/edit_types").overrideAll;(e.exports=f({hoverinfo:h({},i.hoverinfo,{flags:[],arrayOk:!1}),hoverlabel:o.hoverlabel,domain:s({name:"sankey",trace:!0}),orientation:{valType:"enumerated",values:["v","h"],dflt:"h"},valueformat:{valType:"string",dflt:".3s"},valuesuffix:{valType:"string",dflt:""},arrangement:{valType:"enumerated",values:["snap","perpendicular","freeform","fixed"],dflt:"snap"},textfont:n({}),node:{label:{valType:"data_array",dflt:[]},groups:{valType:"info_array",impliedEdits:{x:[],y:[]},dimensions:2,freeLength:!0,dflt:[],items:{valType:"number",editType:"calc"}},x:{valType:"data_array",dflt:[]},y:{valType:"data_array",dflt:[]},color:{valType:"color",arrayOk:!0},line:{color:{valType:"color",dflt:a.defaultLine,arrayOk:!0},width:{valType:"number",min:0,dflt:.5,arrayOk:!0}},pad:{valType:"number",arrayOk:!1,min:0,dflt:20},thickness:{valType:"number",arrayOk:!1,min:1,dflt:20},hoverinfo:{valType:"enumerated",values:["all","none","skip"],dflt:"all"},hoverlabel:o.hoverlabel,hovertemplate:l({},{keys:["value","label"]})},link:{label:{valType:"data_array",dflt:[]},color:{valType:"color",arrayOk:!0},line:{color:{valType:"color",dflt:a.defaultLine,arrayOk:!0},width:{valType:"number",min:0,dflt:0,arrayOk:!0}},source:{valType:"data_array",dflt:[]},target:{valType:"data_array",dflt:[]},value:{valType:"data_array",dflt:[]},hoverinfo:{valType:"enumerated",values:["all","none","skip"],dflt:"all"},hoverlabel:o.hoverlabel,hovertemplate:l({},{keys:["value","label"]}),colorscales:u("concentrationscales",{editType:"calc",label:{valType:"string",editType:"calc",dflt:""},cmax:{valType:"number",editType:"calc",dflt:1},cmin:{valType:"number",editType:"calc",dflt:0},colorscale:h(c().colorscale,{dflt:[[0,"white"],[1,"black"]]})})}},"calc","nested")).transforms=void 0},{"../../components/color/attributes":577,"../../components/colorscale/attributes":585,"../../components/fx/attributes":608,"../../components/fx/hovertemplate_attributes":616,"../../lib/extend":691,"../../plot_api/edit_types":732,"../../plot_api/plot_template":739,"../../plots/attributes":746,"../../plots/domain":774,"../../plots/font_attributes":775}],1043:[function(t,e,r){"use strict";var n=t("../../plot_api/edit_types").overrideAll,i=t("../../plots/get_data").getModuleCalcData,a=t("./plot"),o=t("../../components/fx/layout_attributes"),s=t("../../lib/setcursor"),l=t("../../components/dragelement"),c=t("../../plots/cartesian/select").prepSelect,u=t("../../lib"),h=t("../../registry");function f(t,e){var r=t._fullData[e],n=t._fullLayout,i=n.dragmode,a="pan"===n.dragmode?"move":"crosshair",o=r._bgRect;if("pan"!==i&&"zoom"!==i){s(o,a);var 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g(t,e){if(t0){r=d[n];break}return r}function y(t,e){if(!(t<1||e<1)){for(var r=v(t),n=v(e),i=1,a=0;a_;)r--,r/=m(r),++r1?n:1},p.refineCoords=function(t){for(var e=this.dataScaleX,r=this.dataScaleY,n=t[0].shape[0],o=t[0].shape[1],s=0|Math.floor(t[0].shape[0]*e+1),l=0|Math.floor(t[0].shape[1]*r+1),c=1+n+1,u=1+o+1,h=i(new Float32Array(c*u),[c,u]),f=0;f0&&null!==this.contourStart[t]&&null!==this.contourEnd[t]&&this.contourEnd[t]>this.contourStart[t]))for(i[t]=!0,e=this.contourStart[t];ea&&(this.minValues[e]=a),this.maxValues[e]",maxDimensionCount:60,overdrag:45,releaseTransitionDuration:120,releaseTransitionEase:"cubic-out",scrollbarCaptureWidth:18,scrollbarHideDelay:1e3,scrollbarHideDuration:1e3,scrollbarOffset:5,scrollbarWidth:8,transitionDuration:100,transitionEase:"cubic-out",uplift:5,wrapSpacer:" ",wrapSplitCharacter:" 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r=l(e.cells.values),p=function(t){return t.slice(e.header.values.length,t.length)},d=l(e.header.values);d.length&&!d[0].length&&(d[0]=[""],d=l(d));var g=d.concat(p(r).map(function(){return c((d[0]||[""]).length)})),v=e.domain,m=Math.floor(t._fullLayout._size.w*(v.x[1]-v.x[0])),y=Math.floor(t._fullLayout._size.h*(v.y[1]-v.y[0])),x=e.header.values.length?g[0].map(function(){return e.header.height}):[n.emptyHeaderHeight],b=r.length?r[0].map(function(){return e.cells.height}):[],_=x.reduce(s,0),w=f(b,y-_+n.uplift),k=h(f(x,_),[]),A=h(w,k),T={},M=e._fullInput.columnorder.concat(p(r.map(function(t,e){return e}))),S=g.map(function(t,r){var n=Array.isArray(e.columnwidth)?e.columnwidth[Math.min(r,e.columnwidth.length-1)]:e.columnwidth;return a(n)?Number(n):1}),E=S.reduce(s,0);S=S.map(function(t){return t/E*m});var C=Math.max(o(e.header.line.width),o(e.cells.line.width)),L={key:e.uid+t._context.staticPlot,translateX:v.x[0]*t._fullLayout._size.w,translateY:t._fullLayout._size.h*(1-v.y[1]),size:t._fullLayout._size,width:m,maxLineWidth:C,height:y,columnOrder:M,groupHeight:y,rowBlocks:A,headerRowBlocks:k,scrollY:0,cells:i({},e.cells,{values:r}),headerCells:i({},e.header,{values:g}),gdColumns:g.map(function(t){return t[0]}),gdColumnsOriginalOrder:g.map(function(t){return t[0]}),prevPages:[0,0],scrollbarState:{scrollbarScrollInProgress:!1},columns:g.map(function(t,e){var r=T[t];return T[t]=(r||0)+1,{key:t+"__"+T[t],label:t,specIndex:e,xIndex:M[e],xScale:u,x:void 0,calcdata:void 0,columnWidth:S[e]}})};return L.columns.forEach(function(t){t.calcdata=L,t.x=u(t)}),L}},{"../../lib/extend":691,"./constants":1157,"fast-isnumeric":222}],1159:[function(t,e,r){"use strict";var n=t("../../lib/extend").extendFlat;r.splitToPanels=function(t){var e=[0,0],r=n({},t,{key:"header",type:"header",page:0,prevPages:e,currentRepaint:[null,null],dragHandle:!0,values:t.calcdata.headerCells.values[t.specIndex],rowBlocks:t.calcdata.headerRowBlocks,calcdata:n({},t.calcdata,{cells:t.calcdata.headerCells})});return[n({},t,{key:"cells1",type:"cells",page:0,prevPages:e,currentRepaint:[null,null],dragHandle:!1,values:t.calcdata.cells.values[t.specIndex],rowBlocks:t.calcdata.rowBlocks}),n({},t,{key:"cells2",type:"cells",page:1,prevPages:e,currentRepaint:[null,null],dragHandle:!1,values:t.calcdata.cells.values[t.specIndex],rowBlocks:t.calcdata.rowBlocks}),r]},r.splitToCells=function(t){var e=function(t){var e=t.rowBlocks[t.page],r=e?e.rows[0].rowIndex:0,n=e?r+e.rows.length:0;return[r,n]}(t);return(t.values||[]).slice(e[0],e[1]).map(function(r,n){return{keyWithinBlock:n+("string"==typeof r&&r.match(/[<$&> 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h,f,p=u?"":_(t.calcdata.cells.prefix,e,r)||"",d=u?"":_(t.calcdata.cells.suffix,e,r)||"",g=u?null:_(t.calcdata.cells.format,e,r)||null,v=p+(g?i.format(g)(t.value):t.value)+d;if(t.wrappingNeeded=!t.wrapped&&!l&&!u&&(h=b(v)),t.cellHeightMayIncrease=s||u||t.mayHaveMarkup||(void 0===h?b(v):h),t.needsConvertToTspans=t.mayHaveMarkup||t.wrappingNeeded||t.latex,t.wrappingNeeded){var m=(" "===n.wrapSplitCharacter?v.replace(/    i&&n.push(a),i+=l}return n}(i,l,s);1===c.length&&(c[0]===i.length-1?c.unshift(c[0]-1):c.push(c[0]+1)),c[0]%2&&c.reverse(),e.each(function(t,e){t.page=c[e],t.scrollY=l}),e.attr("transform",function(t){return"translate(0 "+(I(t.rowBlocks,t.page)-t.scrollY)+")"}),t&&(E(t,r,e,c,n.prevPages,n,0),E(t,r,e,c,n.prevPages,n,1),m(r,t))}}function S(t,e,r,a){return function(o){var s=o.calcdata?o.calcdata:o,l=e.filter(function(t){return s.key===t.key}),c=r||s.scrollbarState.dragMultiplier,u=s.scrollY;s.scrollY=void 0===a?s.scrollY+c*i.event.dy:a;var h=l.selectAll("."+n.cn.yColumn).selectAll("."+n.cn.columnBlock).filter(k);return M(t,h,l),s.scrollY===u}}function E(t,e,r,n,i,a,o){n[o]!==i[o]&&(clearTimeout(a.currentRepaint[o]),a.currentRepaint[o]=setTimeout(function(){var a=r.filter(function(t,e){return e===o&&n[e]!==i[e]});y(t,e,a,r),i[o]=n[o]}))}function C(t,e,r,a){return function(){var o=i.select(e.parentNode);o.each(function(t){var e=t.fragments;o.selectAll("tspan.line").each(function(t,r){e[r].width=this.getComputedTextLength()});var r,i,a=e[e.length-1].width,s=e.slice(0,-1),l=[],c=0,u=t.column.columnWidth-2*n.cellPad;for(t.value="";s.length;)c+(i=(r=s.shift()).width+a)>u&&(t.value+=l.join(n.wrapSpacer)+n.lineBreaker,l=[],c=0),l.push(r.text),c+=i;c&&(t.value+=l.join(n.wrapSpacer)),t.wrapped=!0}),o.selectAll("tspan.line").remove(),x(o.select("."+n.cn.cellText),r,t,a),i.select(e.parentNode.parentNode).call(O)}}function L(t,e,r,a,o){return function(){if(!o.settledY){var s=i.select(e.parentNode),l=R(o),c=o.key-l.firstRowIndex,u=l.rows[c].rowHeight,h=o.cellHeightMayIncrease?e.parentNode.getBoundingClientRect().height+2*n.cellPad:u,f=Math.max(h,u);f-l.rows[c].rowHeight&&(l.rows[c].rowHeight=f,t.selectAll("."+n.cn.columnCell).call(O),M(null,t.filter(k),0),m(r,a,!0)),s.attr("transform",function(){var t=this.parentNode.getBoundingClientRect(),e=i.select(this.parentNode).select("."+n.cn.cellRect).node().getBoundingClientRect(),r=this.transform.baseVal.consolidate(),a=e.top-t.top+(r?r.matrix.f:n.cellPad);return"translate("+z(o,i.select(this.parentNode).select("."+n.cn.cellTextHolder).node().getBoundingClientRect().width)+" "+a+")"}),o.settledY=!0}}}function z(t,e){switch(t.align){case"left":return n.cellPad;case"right":return t.column.columnWidth-(e||0)-n.cellPad;case"center":return(t.column.columnWidth-(e||0))/2;default:return n.cellPad}}function O(t){t.attr("transform",function(t){var e=t.rowBlocks[0].auxiliaryBlocks.reduce(function(t,e){return t+D(e,1/0)},0);return"translate(0 "+(D(R(t),t.key)+e)+")"}).selectAll("."+n.cn.cellRect).attr("height",function(t){return(e=R(t),r=t.key,e.rows[r-e.firstRowIndex]).rowHeight;var e,r})}function I(t,e){for(var r=0,n=e-1;n>=0;n--)r+=P(t[n]);return r}function D(t,e){for(var r=0,n=0;n0){var y,x,b,_,w,k=t.xa,A=t.ya;"h"===f.orientation?(w=e,y="y",b=A,x="x",_=k):(w=r,y="x",b=k,x="y",_=A);var T=h[t.index];if(w>=T.span[0]&&w<=T.span[1]){var M=n.extendFlat({},t),S=_.c2p(w,!0),E=o.getKdeValue(T,f,w),C=o.getPositionOnKdePath(T,f,S),L=b._offset,z=b._length;M[y+"0"]=C[0],M[y+"1"]=C[1],M[x+"0"]=M[x+"1"]=S,M[x+"Label"]=x+": "+i.hoverLabelText(_,w)+", "+h[0].t.labels.kde+" "+E.toFixed(3),M.spikeDistance=m[0].spikeDistance;var O=y+"Spike";M[O]=m[0][O],m[0].spikeDistance=void 0,m[0][O]=void 0,M.hovertemplate=!1,v.push(M),(u={stroke:t.color})[y+"1"]=n.constrain(L+C[0],L,L+z),u[y+"2"]=n.constrain(L+C[1],L,L+z),u[x+"1"]=u[x+"2"]=_._offset+S}}}-1!==p.indexOf("points")&&(c=a.hoverOnPoints(t,e,r));var I=l.selectAll(".violinline-"+f.uid).data(u?[0]:[]);return I.enter().append("line").classed("violinline-"+f.uid,!0).attr("stroke-width",1.5),I.exit().remove(),I.attr(u),"closest"===s?c?[c]:v:c?(v.push(c),v):v}},{"../../lib":701,"../../plots/cartesian/axes":749,"../box/hover":867,"./helpers":1167}],1169:[function(t,e,r){"use 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n=t("../box/layout_attributes"),i=t("../../lib").extendFlat;e.exports={violinmode:i({},n.boxmode,{}),violingap:i({},n.boxgap,{}),violingroupgap:i({},n.boxgroupgap,{})}},{"../../lib":701,"../box/layout_attributes":869}],1171:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./layout_attributes"),a=t("../box/layout_defaults");e.exports=function(t,e,r){a._supply(t,e,r,function(r,a){return n.coerce(t,e,i,r,a)},"violin")}},{"../../lib":701,"../box/layout_defaults":870,"./layout_attributes":1170}],1172:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../lib"),a=t("../../components/drawing"),o=t("../box/plot"),s=t("../scatter/line_points"),l=t("./helpers");e.exports=function(t,e,r,c){var u=t._fullLayout,h=e.xaxis,f=e.yaxis;function p(t){var e=s(t,{xaxis:h,yaxis:f,connectGaps:!0,baseTolerance:.75,shape:"spline",simplify:!0});return a.smoothopen(e[0],1)}i.makeTraceGroups(c,r,"trace violins").each(function(t){var r=n.select(this),a=t[0],s=a.t,c=a.trace;if(e.isRangePlot||(a.node3=r),!0!==c.visible||s.empty)r.remove();else{var d=s.bPos,g=s.bdPos,v=e[s.valLetter+"axis"],m=e[s.posLetter+"axis"],y="both"===c.side,x=y||"positive"===c.side,b=y||"negative"===c.side,_=r.selectAll("path.violin").data(i.identity);_.enter().append("path").style("vector-effect","non-scaling-stroke").attr("class","violin"),_.exit().remove(),_.each(function(t){var e,r,i,a,o,l,h,f,_=n.select(this),w=t.density,k=w.length,A=t.pos+d,T=m.c2p(A);if(c.width)e=s.maxKDE/g;else{var M=u._violinScaleGroupStats[c.scalegroup];e="count"===c.scalemode?M.maxKDE/g*(M.maxCount/t.pts.length):M.maxKDE/g}if(x){for(h=new Array(k),o=0;o0)c.extraText=m(v)+" "+o;else{if(!(v<0))return;c.extraText="("+m(-v)+") "+s}c.extraText+="
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"version": "2.0.1", + "version": "2.4.12", "description": "", "main": "webpack.config.js", "scripts": { @@ -39,6 +39,7 @@ "jstree": "^3.3.8", "katex": "^0.11.0", "local-links": "^1.4.1", + "plotly.js-dist": "^1.58.5", "popper.js": "^1.15.0", "pug": "^2.0.3", "underscore": "^1.9.1", From 1205b0e63e1fe2f397625fa09e82017d0ca20e31 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 8 Sep 2022 11:02:57 -0400 Subject: [PATCH 27/97] Added a derived property for a workflow groups type. --- client/models/workflow-group.js | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/client/models/workflow-group.js b/client/models/workflow-group.js index f79229643a..b1e86e8e92 100644 --- a/client/models/workflow-group.js +++ b/client/models/workflow-group.js @@ -57,6 +57,15 @@ module.exports = State.extend({ } return null } + }, + type: { + deps: ["model"], + fn: function () { + if(this.model.is_spatial) { + return "Spatial"; + } + return "Well-Mixed"; + } } } }); \ No newline at end of file From bbf911600d9a2eea90edc52f07c80dbb08f4c1e0 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 8 Sep 2022 11:05:00 -0400 Subject: [PATCH 28/97] Added the type to the workflow group listings in the project manager. --- client/templates/includes/workflowGroupListing.pug | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/client/templates/includes/workflowGroupListing.pug b/client/templates/includes/workflowGroupListing.pug index d318609c52..a93e6e06d3 100644 --- a/client/templates/includes/workflowGroupListing.pug +++ b/client/templates/includes/workflowGroupListing.pug @@ -2,11 +2,15 @@ div div.ml-1.row - div.col-md-6 + div.col-sm-5 a.btn.btn-outline-secondary.box-shadow.text-break(href=this.model.open role="button" style="width: 100%;")=this.model.name - div.col-md-5 + div.col-sm-3 + + span=`Type: ${this.model.type}` + + div.col-sm-3 button.btn.btn-outline-secondary.inline.dropdown-toggle.box-shadow( id=this.model.elementID + "-workflow-btn", @@ -25,7 +29,7 @@ div a.btn(id=this.model.elementID + "-jupyter-notebook" data-hook=this.model.elementID + "-jupyter-notebook" style="padding: 0;") Jupyter Notebook - div.col-md-1 + div.col-sm-1 button.btn.btn-outline-secondary.box-shadow(data-hook=this.model.elementID + "-remove") From a94e3fb8765a0be9fe65d8201102b31ff2f0594c Mon Sep 17 00:00:00 2001 From: BryanRumsey <44621966+BryanRumsey@users.noreply.github.com> Date: Tue, 13 Sep 2022 10:33:03 -0400 Subject: [PATCH 29/97] Update Dockerfile.jupyterhub Added spatialpy install and updated version for gillespy --- jupyterhub/Dockerfile.jupyterhub | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/jupyterhub/Dockerfile.jupyterhub b/jupyterhub/Dockerfile.jupyterhub index d3d9e413b7..75f06a51b9 100644 --- a/jupyterhub/Dockerfile.jupyterhub +++ b/jupyterhub/Dockerfile.jupyterhub @@ -44,7 +44,8 @@ RUN python3 -m pip install --no-cache-dir \ psycopg2==2.7.* \ nbviewer==1.0.1 \ notebook \ - gillespy2==1.6.3 + gillespy2==1.7.0 \ + spatialpy==1.1.0 COPY static/* /usr/local/share/jupyterhub/static/ From 45b8f5078c6dca05c5cc47f4f4b53a1fd2409ffb Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 13 Sep 2022 11:00:32 -0400 Subject: [PATCH 30/97] Fixed model mode section for read only spatial models. --- client/model-view/model-view.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/client/model-view/model-view.js b/client/model-view/model-view.js index 1176928735..d259bc279f 100644 --- a/client/model-view/model-view.js +++ b/client/model-view/model-view.js @@ -327,7 +327,7 @@ module.exports = View.extend({ this.toggleVolumeContainer(); }, setReadOnlyMode: function (component) { - if(this.model.is_spatial) { + if(this.model.is_spatial && component === "system-volume") { $(this.queryByHook("system-volume-container")).css("display", "none"); }else{ $(this.queryByHook(component + '-edit-tab')).addClass("disabled"); From aab1429aff1a376c2479e1bed6741cda25be6d70 Mon Sep 17 00:00:00 2001 From: Brian Drawert Date: Tue, 13 Sep 2022 11:25:49 -0700 Subject: [PATCH 31/97] Moving npm to the dockerfile for the jupyter hub container --- Makefile | 13 +++++----- jupyterhub/Dockerfile.jupyterhub | 41 ++++++++++++++++++++++---------- jupyterhub/docker-compose.yml | 6 ++--- 3 files changed, 38 insertions(+), 22 deletions(-) diff --git a/Makefile b/Makefile index ee4955a7aa..8201aca602 100644 --- a/Makefile +++ b/Makefile @@ -84,31 +84,32 @@ cert: openssl req -x509 -nodes -days 365 -newkey rsa:2048 -keyout $(SSL_KEY) -out $(SSL_CERT) build_home_page: - npm run build-home +# npm run build-home build_hub: build_home_page check-files network volumes export AUTH_CLASS='' && export OAUTH_FILE='.oauth.dummy.env' && \ - cd ./jupyterhub && docker-compose build + docker-compose --env-file jupyterhub/.env -f jupyterhub/docker-compose.yml build + #cd ./jupyterhub && docker-compose build build_hub_clean: build_home_page check-files network volumes export AUTH_CLASS='' && export OAUTH_FILE='.oauth.dummy.env' && \ - cd ./jupyterhub && docker-compose build --no-cache + docker-compose --env-file jupyterhub/.env -f jupyterhub/docker-compose.yml build --no-cache run_hub_dev: export AUTH_CLASS='jupyterhub.auth.DummyAuthenticator' && \ export OAUTH_FILE='.oauth.dummy.env' && \ - cd ./jupyterhub && docker-compose up + cd jupyterhub && docker-compose up & run_hub_staging: build_hub_clean build_clean check_files_staging kill_hub export AUTH_CLASS=oauthenticator.GoogleOAuthenticator && \ export OAUTH_FILE='.oauth.staging.env' && \ - cd ./jupyterhub && docker-compose up & + cd jupyterhub && docker-compose up & run_hub_prod: build_hub_clean build_clean check_files_prod kill_hub export AUTH_CLASS=oauthenticator.GoogleOAuthenticator && \ export OAUTH_FILE='.oauth.prod.env' && \ - cd ./jupyterhub && docker-compose up & + cd jupyterhub && docker-compose up & kill_hub: export AUTH_CLASS='' && \ diff --git a/jupyterhub/Dockerfile.jupyterhub b/jupyterhub/Dockerfile.jupyterhub index 75f06a51b9..4985f6d56b 100644 --- a/jupyterhub/Dockerfile.jupyterhub +++ b/jupyterhub/Dockerfile.jupyterhub @@ -1,6 +1,6 @@ ARG JUPYTERHUB_VERSION #FROM jupyterhub/jupyterhub-onbuild:$JUPYTERHUB_VERSION -FROM ubuntu:18.04 +FROM ubuntu:20.04 USER root @@ -26,13 +26,13 @@ RUN locale-gen $LC_ALL RUN python3 -m pip install --no-cache --upgrade setuptools pip + RUN npm install -g configurable-http-proxy@^4.2.0 && rm -rf ~/.npm RUN mkdir -p /srv/jupyterhub/ RUN mkdir -p /srv/userlist/ -WORKDIR /srv/jupyterhub EXPOSE 8000 @@ -41,18 +41,33 @@ RUN python3 -m pip install --no-cache-dir \ jupyterhub==1.1.0 \ oauthenticator==0.11.* \ dockerspawner==0.11.* \ - psycopg2==2.7.* \ + #psycopg2==2.7.* \ + psycopg2-binary==2.9.* \ nbviewer==1.0.1 \ notebook \ gillespy2==1.7.0 \ - spatialpy==1.1.0 - -COPY static/* /usr/local/share/jupyterhub/static/ - -COPY custom/favicon.ico /usr/local/share/jupyterhub/static/favicon.ico - -COPY custom/custom.js /opt/stochss-config/.jupyter/custom/custom.js - -COPY cull_idle_servers.py /srv/jupyterhub/cull_idle_servers.py - + spatialpy==1.1.0 \ + plotly + +# build the PUG pages +#WORKDIR /srv/ +#RUN npm install +#RUN npm run build-home + +#COPY static/* /usr/local/share/jupyterhub/static/ +# +#COPY custom/favicon.ico /usr/local/share/jupyterhub/static/favicon.ico +# +#COPY custom/custom.js /opt/stochss-config/.jupyter/custom/custom.js +# +#COPY cull_idle_servers.py /srv/jupyterhub/cull_idle_servers.py + +WORKDIR /srv/ +COPY . /srv/ +RUN npm install +RUN npm run build-home +RUN cp /srv/jupyterhub/static/* /usr/local/share/jupyterhub/static/ +RUN cp /srv/jupyterhub/custom/favicon.ico /usr/local/share/jupyterhub/static/favicon.ico +# +WORKDIR /srv/jupyterhub CMD ["jupyterhub" "-f" "/srv/jupyterhub/jupyterhub_config.py"] diff --git a/jupyterhub/docker-compose.yml b/jupyterhub/docker-compose.yml index f3d00de070..159dec393d 100644 --- a/jupyterhub/docker-compose.yml +++ b/jupyterhub/docker-compose.yml @@ -17,8 +17,8 @@ services: depends_on: - hub-db build: - context: . - dockerfile: Dockerfile.jupyterhub + context: .. + dockerfile: jupyterhub/Dockerfile.jupyterhub args: JUPYTERHUB_VERSION: ${JUPYTERHUB_VERSION} restart: always @@ -30,7 +30,7 @@ services: - "/var/run/docker.sock:/var/run/docker.sock:rw" # Bind Docker volume on host for JupyterHub database and cookie secrets - "data:${DATA_VOLUME_CONTAINER}" - - "${PWD}:/srv/jupyterhub" + - "/stochss/jupyterhub/presentation_cache/:/srv/jupyterhub/presentation_cache" - "/stochss/userlist:/srv/userlist" ports: - "8000:8000" From 6ed62468b50a6f521568b0e9df4b383f0bb23afc Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Wed, 14 Sep 2022 12:56:39 -0400 Subject: [PATCH 32/97] Added install for python-dev and gcc. --- jupyterhub/Dockerfile.jupyterhub | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/jupyterhub/Dockerfile.jupyterhub b/jupyterhub/Dockerfile.jupyterhub index 4985f6d56b..cb3ab6a08d 100644 --- a/jupyterhub/Dockerfile.jupyterhub +++ b/jupyterhub/Dockerfile.jupyterhub @@ -8,9 +8,11 @@ ENV DEBIAN_FRONTEND=noninteractive RUN apt-get update && apt-get install -yq --no-install-recommends \ ca-certificates \ + gcc \ curl \ gnupg \ locales \ + python3-dev \ python3-pip \ python3-pycurl \ && apt-get clean \ @@ -33,7 +35,6 @@ RUN mkdir -p /srv/jupyterhub/ RUN mkdir -p /srv/userlist/ - EXPOSE 8000 # Install dockerspawner, oauth, postgres From 9bef9516def9e43fd1b45f04114f962e126ba31f Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 15 Sep 2022 09:43:48 -0400 Subject: [PATCH 33/97] Added plot functions for results in job presentations. --- jupyterhub/job_presentation.py | 44 ++++++++++++++++++++++++++++++++++ stochss/handlers/workflows.py | 3 +-- 2 files changed, 45 insertions(+), 2 deletions(-) diff --git a/jupyterhub/job_presentation.py b/jupyterhub/job_presentation.py index 4251d26c64..d154d3caba 100644 --- a/jupyterhub/job_presentation.py +++ b/jupyterhub/job_presentation.py @@ -123,6 +123,10 @@ async def get(self): fig = job.get_plot_from_results(data_keys=body['data_keys'], plt_key=body['plt_key'], add_config=True) job.print_logs(log) + elif body['sim_type'] == "SpatialPy": + fig = job.get_plot_from_spatial_results( + data_keys=body['data_keys'], add_config=True + ) else: fig = job.get_psweep_plot_from_results(fixed=body['data_keys'], kwargs=body['plt_key'], add_config=True) @@ -456,6 +460,46 @@ def get_plot_from_results(self, data_keys, plt_key, add_config=False): raise PlotNotAvailableError(message, traceback.format_exc()) from err + def get_plot_from_spatial_results(self, data_keys, add_config=False): + ''' + Get the plotly figure for the results of a job + + Attributes + ---------- + data_keys : dict + Dictionary of param names and values used to identify the correct data. + add_config : bool + Whether or not to add plotly config settings. + ''' + try: + result = self.__get_filtered_ensemble_results(None) + if data_keys['target'] in ("type", "nu", "rho", "mass"): + fig = result.plot_property( + data_keys['target'], width="auto", height="auto", animated=True, + return_plotly_figure=True + ) + elif data_keys['target'] == "v": + fig = result.plot_property( + data_keys['target'], p_ndx=data_keys['index'], width="auto", height="auto", + animated=True, return_plotly_figure=True + ) + else: + concentration = data_keys['mode'] == "discrete-concentration" + deterministic = data_keys['mode'] == "continuous" + fig = result.plot_species( + data_keys['target'], concentration=concentration, deterministic=deterministic, + width="auto", height="auto", animated=True, return_plotly_figure=True + ) + if add_config: + fig['config'] = {"responsive": True} + return json.loads(json.dumps(fig, cls=plotly.utils.PlotlyJSONEncoder)) + except FileNotFoundError as err: + message = f"Could not find the results pickle file: {str(err)}" + raise StochSSFileNotFoundError(message, traceback.format_exc()) from err + except KeyError as err: + message = f"The requested plot is not available: {str(err)}" + raise PlotNotAvailableError(message, traceback.format_exc()) from err + def get_psweep_csvzip_from_results(self, fixed, name): ''' Get the csv file of the parameter sweep plot data for download diff --git a/stochss/handlers/workflows.py b/stochss/handlers/workflows.py index dedb3a01f3..bb222d1c64 100644 --- a/stochss/handlers/workflows.py +++ b/stochss/handlers/workflows.py @@ -223,8 +223,7 @@ class PlotWorkflowResultsAPIHandler(APIHandler): @web.authenticated async def get(self): ''' - Retrieve a plot figure of the workflow results based on the plot type - in the request body. + Retrieve a plot figure of the job results based on the plot type in the request body. Attributes ---------- From e9a23daf626bb986660da8749c846db4b93e5e92 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 15 Sep 2022 10:52:08 -0400 Subject: [PATCH 34/97] Fixed issue with domain plots in spatial job presentations. --- client/pages/job-presentation.js | 24 ++++++++++++------------ jupyterhub/job_presentation.py | 9 ++++++++- 2 files changed, 20 insertions(+), 13 deletions(-) diff --git a/client/pages/job-presentation.js b/client/pages/job-presentation.js index 7cfe669692..eb0616256c 100644 --- a/client/pages/job-presentation.js +++ b/client/pages/job-presentation.js @@ -47,18 +47,17 @@ let JobPresentationPage = PageView.extend({ this.model = new Job({ directory: file, }); - let self = this; - let queryStr = "?file=" + file + "&owner=" + owner; - let endpoint = "api/job/load" + queryStr; + let endpoint = `api/job/load?file=${file}&owner=${owner}`; app.getXHR(endpoint, { - success: function (err, response, body) { - self.title = body.name; - self.titleType = body.titleType; - self.model.set(body); - self.renderSubviews(false); + success: (err, response, body) => { + this.title = body.name; + this.titleType = body.titleType; + this.model.set(body); + this.renderSubviews(false); + console.log(body.domainPlot) }, - error: function (err, response, body) { - self.renderSubviews(true); + error: (err, response, body) => { + this.renderSubviews(true); } }); let downloadStart = "/stochss/job/download_presentation"; @@ -81,13 +80,14 @@ let JobPresentationPage = PageView.extend({ } }, renderJobView: function () { - let jobView = new JobView({ + let options = { model: this.model, wkflName: this.title, titleType: this.titleType, newFormat: true, readOnly: true - }); + } + let jobView = new JobView(options); app.registerRenderSubview(this, jobView, "job-view"); } }); diff --git a/jupyterhub/job_presentation.py b/jupyterhub/job_presentation.py index d154d3caba..15f91d8985 100644 --- a/jupyterhub/job_presentation.py +++ b/jupyterhub/job_presentation.py @@ -31,6 +31,7 @@ import plotly from presentation_base import StochSSBase, get_presentation_from_user +from model_presentation import StochSSModel from presentation_error import StochSSJobResultsError, StochSSFileNotFoundError, report_error, \ PlotNotAvailableError, StochSSAPIError @@ -584,7 +585,13 @@ def load(self): ---------- ''' with open(os.path.join(self.path, "job.json"), "r") as job_file: - return json.load(job_file) + job = json.load(job_file) + if not job['model']['is_spatial']: + return {"job": job} + model = StochSSModel(job['model']) + data, domain_plot = model.load() + job['model'] = data + return {"job": job, "domainPlot": domain_plot} def update_fig_layout(self, fig=None, plt_data=None): From 551bee848a701ea0dd557f02a15ec4e380a99e60 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 15 Sep 2022 12:32:37 -0400 Subject: [PATCH 35/97] Fixed pip wheel build for pyzmg. --- jupyterhub/Dockerfile.jupyterhub | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/jupyterhub/Dockerfile.jupyterhub b/jupyterhub/Dockerfile.jupyterhub index cb3ab6a08d..200e526321 100644 --- a/jupyterhub/Dockerfile.jupyterhub +++ b/jupyterhub/Dockerfile.jupyterhub @@ -15,6 +15,7 @@ RUN apt-get update && apt-get install -yq --no-install-recommends \ python3-dev \ python3-pip \ python3-pycurl \ + build-essential \ && apt-get clean \ && rm -rf /var/lib/apt/lists/* @@ -42,7 +43,6 @@ RUN python3 -m pip install --no-cache-dir \ jupyterhub==1.1.0 \ oauthenticator==0.11.* \ dockerspawner==0.11.* \ - #psycopg2==2.7.* \ psycopg2-binary==2.9.* \ nbviewer==1.0.1 \ notebook \ From 800020f6feb185e27fc55472f01cb5bff8afcd7a Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 15 Sep 2022 13:08:18 -0400 Subject: [PATCH 36/97] Fixed load error in job presentations. --- jupyterhub/job_presentation.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/jupyterhub/job_presentation.py b/jupyterhub/job_presentation.py index 15f91d8985..9af2c83801 100644 --- a/jupyterhub/job_presentation.py +++ b/jupyterhub/job_presentation.py @@ -589,9 +589,9 @@ def load(self): if not job['model']['is_spatial']: return {"job": job} model = StochSSModel(job['model']) - data, domain_plot = model.load() - job['model'] = data - return {"job": job, "domainPlot": domain_plot} + data = model.load() + job['model'] = data['model'] + return {"job": job, "domainPlot": data['domain_plot']} def update_fig_layout(self, fig=None, plt_data=None): From 997eb4273e867de4d298b46d8f08d44e420b0fbf Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 15 Sep 2022 13:36:35 -0400 Subject: [PATCH 37/97] Fixed key error. --- jupyterhub/job_presentation.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/jupyterhub/job_presentation.py b/jupyterhub/job_presentation.py index 9af2c83801..365d0f2bc6 100644 --- a/jupyterhub/job_presentation.py +++ b/jupyterhub/job_presentation.py @@ -591,7 +591,7 @@ def load(self): model = StochSSModel(job['model']) data = model.load() job['model'] = data['model'] - return {"job": job, "domainPlot": data['domain_plot']} + return {"job": job, "domainPlot": data['domainPlot']} def update_fig_layout(self, fig=None, plt_data=None): From 2bc590bab0bc35ca8f74d75fbd97705b76a43e9e Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 15 Sep 2022 14:07:43 -0400 Subject: [PATCH 38/97] Added debug statements. --- jupyterhub/job_presentation.py | 1 + 1 file changed, 1 insertion(+) diff --git a/jupyterhub/job_presentation.py b/jupyterhub/job_presentation.py index 365d0f2bc6..5de6bddfef 100644 --- a/jupyterhub/job_presentation.py +++ b/jupyterhub/job_presentation.py @@ -590,6 +590,7 @@ def load(self): return {"job": job} model = StochSSModel(job['model']) data = model.load() + print(data.keys()) job['model'] = data['model'] return {"job": job, "domainPlot": data['domainPlot']} From 5a6fc80d33f1b706ea26ba7e5f35b0e0d960eaf2 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 15 Sep 2022 15:07:06 -0400 Subject: [PATCH 39/97] Refactored load from user to include domain plot. Added additional debug statements. --- jupyterhub/job_presentation.py | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/jupyterhub/job_presentation.py b/jupyterhub/job_presentation.py index 5de6bddfef..cc859847d7 100644 --- a/jupyterhub/job_presentation.py +++ b/jupyterhub/job_presentation.py @@ -54,6 +54,7 @@ async def get(self): Attributes ---------- ''' + log.setLevel(logging.DEBUG) owner = self.get_query_argument(name="owner") log.debug(f"Container id of the owner: {owner}") file = self.get_query_argument(name="file") @@ -67,6 +68,7 @@ async def get(self): job = get_presentation_from_user(owner=owner, file=file, kwargs={"file": file}, process_func=process_job_presentation) log.debug(f"Contents of the json file: {job}") + log.setLevel(logging.WARNING) self.write(job) except StochSSAPIError as load_err: report_error(self, log, load_err) @@ -199,7 +201,10 @@ def process_job_presentation(path, file=None, for_download=False): json.dump(job['job'], job_file, sort_keys=True, indent=4) with open(os.path.join(job_dir, "results.p"), "wb") as res_file: pickle.dump(job['results'], res_file) - return job['job'] + model = StochSSModel(model=job['job']['model']) + data = model.load() + job['job']['model'] = data['model'] + return {"job": job['job'], "domainPlot": data['domainPlot']} job_zip = make_zip_for_download(job) return job_zip, job['name'] From e9e3949a9f02c13f43d4992195e11f595f89ddb7 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 15 Sep 2022 15:47:10 -0400 Subject: [PATCH 40/97] More debug statements. --- jupyterhub/job_presentation.py | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/jupyterhub/job_presentation.py b/jupyterhub/job_presentation.py index cc859847d7..78d63d89a2 100644 --- a/jupyterhub/job_presentation.py +++ b/jupyterhub/job_presentation.py @@ -203,6 +203,9 @@ def process_job_presentation(path, file=None, for_download=False): pickle.dump(job['results'], res_file) model = StochSSModel(model=job['job']['model']) data = model.load() + log.debug("*"*100) + log.debug(data.keys()) + log.debug("*"*100) job['job']['model'] = data['model'] return {"job": job['job'], "domainPlot": data['domainPlot']} job_zip = make_zip_for_download(job) @@ -595,7 +598,9 @@ def load(self): return {"job": job} model = StochSSModel(job['model']) data = model.load() - print(data.keys()) + log.debug("*"*100) + log.debug(data.keys()) + log.debug("*"*100) job['model'] = data['model'] return {"job": job, "domainPlot": data['domainPlot']} From 73342169f97461917dcd3ec1879f41f6032869f3 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 15 Sep 2022 16:41:11 -0400 Subject: [PATCH 41/97] Fixed domain ploting for spatial job presentations. --- client/pages/job-presentation.js | 5 ++++- jupyterhub/job_presentation.py | 16 +++++----------- 2 files changed, 9 insertions(+), 12 deletions(-) diff --git a/client/pages/job-presentation.js b/client/pages/job-presentation.js index eb0616256c..42d0b34ff4 100644 --- a/client/pages/job-presentation.js +++ b/client/pages/job-presentation.js @@ -54,7 +54,7 @@ let JobPresentationPage = PageView.extend({ this.titleType = body.titleType; this.model.set(body); this.renderSubviews(false); - console.log(body.domainPlot) + this.domainPlot = body.domainPlot ? body.domainPlot : null; }, error: (err, response, body) => { this.renderSubviews(true); @@ -87,6 +87,9 @@ let JobPresentationPage = PageView.extend({ newFormat: true, readOnly: true } + if(this.domainPlot) { + options.domainPlot = this.domainPlot; + } let jobView = new JobView(options); app.registerRenderSubview(this, jobView, "job-view"); } diff --git a/jupyterhub/job_presentation.py b/jupyterhub/job_presentation.py index 78d63d89a2..2ac1caafd6 100644 --- a/jupyterhub/job_presentation.py +++ b/jupyterhub/job_presentation.py @@ -31,7 +31,7 @@ import plotly from presentation_base import StochSSBase, get_presentation_from_user -from model_presentation import StochSSModel +from model_presentation import StochSSSpatialModel from presentation_error import StochSSJobResultsError, StochSSFileNotFoundError, report_error, \ PlotNotAvailableError, StochSSAPIError @@ -54,7 +54,6 @@ async def get(self): Attributes ---------- ''' - log.setLevel(logging.DEBUG) owner = self.get_query_argument(name="owner") log.debug(f"Container id of the owner: {owner}") file = self.get_query_argument(name="file") @@ -68,7 +67,6 @@ async def get(self): job = get_presentation_from_user(owner=owner, file=file, kwargs={"file": file}, process_func=process_job_presentation) log.debug(f"Contents of the json file: {job}") - log.setLevel(logging.WARNING) self.write(job) except StochSSAPIError as load_err: report_error(self, log, load_err) @@ -201,11 +199,10 @@ def process_job_presentation(path, file=None, for_download=False): json.dump(job['job'], job_file, sort_keys=True, indent=4) with open(os.path.join(job_dir, "results.p"), "wb") as res_file: pickle.dump(job['results'], res_file) - model = StochSSModel(model=job['job']['model']) + if not job['job']['model']['is_spatial']: + return {"job": job['job']} + model = StochSSSpatialModel(model=job['job']['model']) data = model.load() - log.debug("*"*100) - log.debug(data.keys()) - log.debug("*"*100) job['job']['model'] = data['model'] return {"job": job['job'], "domainPlot": data['domainPlot']} job_zip = make_zip_for_download(job) @@ -596,11 +593,8 @@ def load(self): job = json.load(job_file) if not job['model']['is_spatial']: return {"job": job} - model = StochSSModel(job['model']) + model = StochSSSpatialModel(job['model']) data = model.load() - log.debug("*"*100) - log.debug(data.keys()) - log.debug("*"*100) job['model'] = data['model'] return {"job": job, "domainPlot": data['domainPlot']} From 86de2221c1b5097169f4dd5babc13f0885fe0263 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 15 Sep 2022 17:17:36 -0400 Subject: [PATCH 42/97] Fixed tamplate error. --- client/pages/job-presentation.js | 11 ++++------- 1 file changed, 4 insertions(+), 7 deletions(-) diff --git a/client/pages/job-presentation.js b/client/pages/job-presentation.js index 42d0b34ff4..934b533dd4 100644 --- a/client/pages/job-presentation.js +++ b/client/pages/job-presentation.js @@ -53,8 +53,8 @@ let JobPresentationPage = PageView.extend({ this.title = body.name; this.titleType = body.titleType; this.model.set(body); - this.renderSubviews(false); this.domainPlot = body.domainPlot ? body.domainPlot : null; + this.renderSubviews(false); }, error: (err, response, body) => { this.renderSubviews(true); @@ -80,17 +80,14 @@ let JobPresentationPage = PageView.extend({ } }, renderJobView: function () { - let options = { + let jobView = new JobView({ model: this.model, wkflName: this.title, titleType: this.titleType, + domainPlot: this.domainPlot, newFormat: true, readOnly: true - } - if(this.domainPlot) { - options.domainPlot = this.domainPlot; - } - let jobView = new JobView(options); + }); app.registerRenderSubview(this, jobView, "job-view"); } }); From b352620d97564d38a85f5d0c6c4b912048560e32 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 16 Sep 2022 08:30:49 -0400 Subject: [PATCH 43/97] Added domain plot to job view to allow it to be passed to the model. --- client/job-view/job-view.js | 2 ++ 1 file changed, 2 insertions(+) diff --git a/client/job-view/job-view.js b/client/job-view/job-view.js index 9d7d8080bd..5d4fd9955e 100644 --- a/client/job-view/job-view.js +++ b/client/job-view/job-view.js @@ -42,6 +42,7 @@ module.exports = View.extend({ this.newFormat = attrs.newFormat; this.settingsHeader = this.readOnly ? "Settings" : "Review Settings"; this.modelHeader = (this.readOnly ? "Model: " : "Review Model: ") + this.model.model.name; + this.domainPlot = attrs.domainPlot; }, render: function (attrs, options) { View.prototype.render.apply(this, arguments); @@ -66,6 +67,7 @@ module.exports = View.extend({ renderModelView: function () { let modelView = new ModelView({ model: this.model.model, + domainPlot: this.domainPlot, readOnly: true }); app.registerRenderSubview(this, modelView, "model-viewer-container"); From 73f26938dbf41793991b09aad19d69c88f00cd1c Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 16 Sep 2022 09:23:44 -0400 Subject: [PATCH 44/97] Fixed for missing template. --- client/pages/job-presentation.js | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/client/pages/job-presentation.js b/client/pages/job-presentation.js index 934b533dd4..b59e979bc7 100644 --- a/client/pages/job-presentation.js +++ b/client/pages/job-presentation.js @@ -50,9 +50,9 @@ let JobPresentationPage = PageView.extend({ let endpoint = `api/job/load?file=${file}&owner=${owner}`; app.getXHR(endpoint, { success: (err, response, body) => { - this.title = body.name; - this.titleType = body.titleType; - this.model.set(body); + this.title = body.job.name; + this.titleType = body.job.titleType; + this.model.set(body.job); this.domainPlot = body.domainPlot ? body.domainPlot : null; this.renderSubviews(false); }, From c063a4da083a287974cec44072c3edbe524f9013 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 16 Sep 2022 10:16:29 -0400 Subject: [PATCH 45/97] Updated load function for spatial models in presentations. --- jupyterhub/model_presentation.py | 67 +++++++++++++++++++++++++------- jupyterhub/presentation_base.py | 1 + 2 files changed, 55 insertions(+), 13 deletions(-) diff --git a/jupyterhub/model_presentation.py b/jupyterhub/model_presentation.py index 80fa5b55cd..967d2e9e92 100644 --- a/jupyterhub/model_presentation.py +++ b/jupyterhub/model_presentation.py @@ -274,6 +274,34 @@ def __load_domain_plot(self): return json.dumps({"data":trace_list, "layout":layout, "config":{"responsive":True}}, cls=plotly.utils.PlotlyJSONEncoder) + def __update_domain(self, domain=None): + if domain is None: + if "domain" not in self.model.keys() or len(self.model['domain'].keys()) < 6: + self.model['domain'] = self.get_model_template()['domain'] + domain = self.model['domain'] + if "template_version" not in domain or domain['template_version'] != self.TEMPLATE_VERSION: + if "static" not in domain.keys(): + domain['static'] = True + type_changes = {} + for i, d_type in enumerate(domain['types']): + if d_type['typeID'] != i: + type_changes[d_type['typeID']] = i + d_type['typeID'] = i + if "rho" not in d_type.keys(): + d_type['rho'] = d_type['mass'] / d_type['volume'] + if "c" not in d_type.keys(): + d_type['c'] = 10 + if "geometry" not in d_type.keys(): + d_type['geometry'] = "" + if domain['particles']: + for particle in domain['particles']: + if particle['type'] in type_changes: + particle['type'] = type_changes[particle['type']] + if "rho" not in particle.keys(): + particle['rho'] = particle['mass'] / particle['volume'] + if "c" not in particle.keys(): + particle['c'] = 10 + domain['template_version'] = self.TEMPLATE_VERSION def load(self): ''' @@ -282,18 +310,31 @@ def load(self): Attributes ---------- ''' - if not self.model['defaultMode']: - self.model['defaultMode'] = "discrete" - if "static" not in self.model['domain'].keys(): - self.model['domain']['static'] = True - for species in self.model['species']: - if "types" not in species.keys(): - species['types'] = list(range(1, len(self.model['domain']['types']))) - if "diffusionConst" not in species.keys(): - diff = 0.0 if "diffusionCoeff" not in species.keys() else species['diffusionCoeff'] - species['diffusionConst'] = diff - for reaction in self.model['reactions']: - if "types" not in reaction.keys(): - reaction['types'] = list(range(1, len(self.model['domain']['types']))) + if "template_version" not in self.model or \ + self.model['template_version'] != self.TEMPLATE_VERSION: + if not self.model['defaultMode']: + self.model['defaultMode'] = "discrete" + elif self.model['defaultMode'] == "dynamic": + self.model['defaultMode'] = "discrete-concentration" + if "timestepSize" not in self.model['modelSettings'].keys(): + self.model['modelSettings']['timestepSize'] = 1e-5 + self.__update_domain() + if "boundaryConditions" not in self.model.keys(): + self.model['boundaryConditions'] = [] + for species in self.model['species']: + if "types" not in species.keys(): + species['types'] = list(range(1, len(self.model['domain']['types']))) + if "diffusionConst" not in species.keys(): + if "diffusionCoeff" not in species.keys(): + diff = 0.0 + else: + diff = species['diffusionCoeff'] + species['diffusionConst'] = diff + for reaction in self.model['reactions']: + if "odePropensity" not in reaction.keys(): + reaction['odePropensity'] = reaction['propensity'] + if "types" not in reaction.keys(): + reaction['types'] = list(range(1, len(self.model['domain']['types']))) + self.model['template_version'] = self.TEMPLATE_VERSION plot = json.loads(self.__load_domain_plot()) return {"model": self.model, "domainPlot": plot} diff --git a/jupyterhub/presentation_base.py b/jupyterhub/presentation_base.py index fdafb4aa7b..7c4f7b04a3 100644 --- a/jupyterhub/presentation_base.py +++ b/jupyterhub/presentation_base.py @@ -95,6 +95,7 @@ class StochSSBase(): ################################################################################################ ''' user_dir = os.path.expanduser("~") # returns the path to the users home directory + TEMPLATE_VERSION = 1 def __init__(self, path=None): ''' From a0470111806831d4d7501b486153d415abe36e9c Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 16 Sep 2022 12:02:16 -0400 Subject: [PATCH 46/97] Pylint updates. --- jupyterhub/job_presentation.py | 14 ++++++------ jupyterhub/model_presentation.py | 6 +++-- stochss/handlers/util/scripts/start_job.py | 4 ++-- stochss/handlers/util/spatial_simulation.py | 5 ++--- stochss/handlers/util/stochss_workflow.py | 25 +++++++++++---------- stochss/handlers/workflows.py | 2 +- 6 files changed, 29 insertions(+), 27 deletions(-) diff --git a/jupyterhub/job_presentation.py b/jupyterhub/job_presentation.py index 2ac1caafd6..b67ec88f9d 100644 --- a/jupyterhub/job_presentation.py +++ b/jupyterhub/job_presentation.py @@ -195,7 +195,7 @@ def process_job_presentation(path, file=None, for_download=False): job_dir = os.path.join(dirname, file) job['job']['directory'] = job_dir os.mkdir(job_dir) - with open(os.path.join(job_dir, "job.json"), "w") as job_file: + with open(os.path.join(job_dir, "job.json"), "w", encoding="utf-8") as job_file: json.dump(job['job'], job_file, sort_keys=True, indent=4) with open(os.path.join(job_dir, "results.p"), "wb") as res_file: pickle.dump(job['results'], res_file) @@ -237,7 +237,7 @@ def make_zip_for_download(job): if "No logs" in job['job']['logs']: Path(os.path.join(job_path, "logs.txt")).touch() else: - with open(os.path.join(job_path, "logs.txt"), "w") as logs_file: + with open(os.path.join(job_path, "logs.txt"), "w", encoding="utf-8") as logs_file: logs_file.write(job['job']['logs']) wkfl_path = os.path.dirname(job_path) settings = {"model": info['source_model'], "settings": job['job']['settings'], @@ -262,7 +262,7 @@ def write_json(path, body): body : dict Contents of the file. ''' - with open(path, "w") as file: + with open(path, "w", encoding="utf-8") as file: json.dump(body, file, sort_keys=True, indent=4) @@ -367,7 +367,7 @@ def __is_result_valid(cls, f_keys, key): @classmethod def __write_parameters_csv(cls, path, name, data_keys): csv_path = os.path.join(path, name, "parameters.csv") - with open(csv_path, "w") as csv_file: + with open(csv_path, "w", encoding="utf-8") as csv_file: csv_writer = csv.writer(csv_file) csv_writer.writerow(list(data_keys.keys())) csv_writer.writerow(list(data_keys.values())) @@ -589,7 +589,7 @@ def load(self): Attributes ---------- ''' - with open(os.path.join(self.path, "job.json"), "r") as job_file: + with open(os.path.join(self.path, "job.json"), "r", encoding="utf-8") as job_file: job = json.load(job_file) if not job['model']['is_spatial']: return {"job": job} @@ -660,7 +660,7 @@ def __process_results(cls, results, species, mapper="final", reducer="avg"): @classmethod def __write_csv_file(cls, path, header, param, data): - with open(path, "w") as csv_file: + with open(path, "w", encoding="utf-8") as csv_file: csv_writer = csv.writer(csv_file) csv_writer.writerow(header) for i, val in enumerate(param['range']): @@ -785,7 +785,7 @@ def __process_results(cls, results, species, mapper="final", reducer="avg"): @classmethod def __write_csv_file(cls, path, header, params, data): - with open(path, "w") as csv_file: + with open(path, "w", encoding="utf-8") as csv_file: csv_writer = csv.writer(csv_file) csv_writer.writerow(header) for i, val1 in enumerate(params[0]['range']): diff --git a/jupyterhub/model_presentation.py b/jupyterhub/model_presentation.py index 967d2e9e92..34dd9a0fd2 100644 --- a/jupyterhub/model_presentation.py +++ b/jupyterhub/model_presentation.py @@ -101,7 +101,7 @@ def process_model_presentation(path, file=None, for_download=False): for_download : bool Whether or not the model presentation is being downloaded. ''' - with open(path, "r") as mdl_file: + with open(path, "r", encoding="utf-8") as mdl_file: model = json.load(mdl_file) if for_download: return model @@ -277,7 +277,9 @@ def __load_domain_plot(self): def __update_domain(self, domain=None): if domain is None: if "domain" not in self.model.keys() or len(self.model['domain'].keys()) < 6: - self.model['domain'] = self.get_model_template()['domain'] + raise StochSSAPIError( + 406, "Domain Error", "The model does not contain a domain", None + ) domain = self.model['domain'] if "template_version" not in domain or domain['template_version'] != self.TEMPLATE_VERSION: if "static" not in domain.keys(): diff --git a/stochss/handlers/util/scripts/start_job.py b/stochss/handlers/util/scripts/start_job.py index 930b22a91b..1c11f9ff26 100755 --- a/stochss/handlers/util/scripts/start_job.py +++ b/stochss/handlers/util/scripts/start_job.py @@ -68,7 +68,7 @@ def report_error(err): message = f"Job errors: {str(err)}\n{traceback.format_exc()}" gillespy2_log.error(message) log.error(message) - open('ERROR', 'w').close() + open('ERROR', 'w', encoding="utf-8").close() def setup_logger(log_path): @@ -122,4 +122,4 @@ def setup_logger(log_path): job_handler.close() user_handler.close() # update status to complete - open('COMPLETE', 'w').close() + open('COMPLETE', 'w', encoding="utf-8").close() diff --git a/stochss/handlers/util/spatial_simulation.py b/stochss/handlers/util/spatial_simulation.py index 31b274d4e1..299b76a960 100644 --- a/stochss/handlers/util/spatial_simulation.py +++ b/stochss/handlers/util/spatial_simulation.py @@ -17,15 +17,14 @@ ''' import os -import numpy import pickle import logging import traceback -from spatialpy import TimeSpan, Solver +from spatialpy import TimeSpan from .stochss_job import StochSSJob -from .stochss_errors import StochSSAPIError, StochSSJobResultsError +from .stochss_errors import StochSSJobResultsError log = logging.getLogger("stochss") diff --git a/stochss/handlers/util/stochss_workflow.py b/stochss/handlers/util/stochss_workflow.py index a215cf117a..488ad299e7 100644 --- a/stochss/handlers/util/stochss_workflow.py +++ b/stochss/handlers/util/stochss_workflow.py @@ -65,12 +65,12 @@ def __init__(self, path, new=False, mdl_path=None, wkfl_type=None): if wkfl_type == "Spatial Ensemble Simulation": settings['simulationSettings']['realizations'] = 1 if os.path.exists(mdl_path): - with open(mdl_path, "r") as mdl_file: + with open(mdl_path, "r", encoding="utf-8") as mdl_file: timespan_settings = json.load(mdl_file)['modelSettings'] settings['timespanSettings'] = timespan_settings self.workflow['settings'] = {"settings": settings, "model": mdl_path, "type":wkfl_type} settings_path = os.path.join(self.get_path(full=True), "settings.json") - with open(settings_path, "w") as settings_file: + with open(settings_path, "w", encoding="utf-8") as settings_file: json.dump(self.workflow['settings'], settings_file, indent=4, sort_keys=True) else: self.workflow['settings'] = None @@ -102,7 +102,7 @@ def __get_old_wkfl_data(self): def __load_annotation(self): path = os.path.join(self.get_path(full=True), "README.md") try: - with open(path, "r") as annotation_file: + with open(path, "r", encoding="utf-8") as annotation_file: annotation = annotation_file.read() except FileNotFoundError: annotation = "" @@ -130,7 +130,7 @@ def __load_jobs(self): def __load_settings(self): path = os.path.join(self.get_path(full=True), "settings.json") try: - with open(path, "r") as settings_file: + with open(path, "r", encoding="utf-8") as settings_file: settings = json.load(settings_file) self.workflow['model'] = settings['model'] self.workflow['settings'] = settings['settings'] @@ -174,9 +174,9 @@ def __update_settings(self): @classmethod def __write_new_files(cls, settings, annotation): - with open("settings.json", "w") as settings_file: + with open("settings.json", "w", encoding="utf-8") as settings_file: json.dump(settings, settings_file, indent=4, sort_keys=True) - with open("README.md", "w") as rdme_file: + with open("README.md", "w", encoding="utf-8") as rdme_file: rdme_file.write(annotation) @@ -221,7 +221,7 @@ def duplicate_as_new(self): resp = {"message": message, "mdlPath": self.workflow['model'], "mdl_file": self.get_file(path=self.workflow['model'])} c_resp = self.check_for_external_model(path=self.workflow['model']) - if "error" in c_resp.keys(): + if "error" in c_resp: resp['error'] = c_resp['error'] return resp, kwargs @@ -258,7 +258,8 @@ def get_model_path(self): ---------- ''' try: - with open(os.path.join(self.path, "settings.json")) as settings_file: + settings_path = os.path.join(self.path, "settings.json") + with open(settings_path, "r", encoding="utf-8") as settings_file: path = json.load(settings_file)['model'] if ".proj" not in self.path: return path @@ -369,11 +370,11 @@ def save(self, new_settings, mdl_path): ''' if self.check_workflow_format(path=self.path): path = os.path.join(self.get_path(full=True), "settings.json") - with open(path, "r") as settings_file: + with open(path, "r", encoding="utf-8") as settings_file: settings = json.load(settings_file) settings['settings'] = new_settings settings['model'] = mdl_path - with open(path, "w") as settings_file: + with open(path, "w", encoding="utf-8") as settings_file: json.dump(settings, settings_file, indent=4, sort_keys=True) return f"Successfully saved the workflow: {self.path}" job = StochSSJob(path=self.path) @@ -387,7 +388,7 @@ def save_annotation(self, annotation): annotation : str Annotation to be saved ''' - with open(os.path.join(self.path, "README.md"), "w") as rdme_file: + with open(os.path.join(self.path, "README.md"), "w", encoding="utf-8") as rdme_file: rdme_file.write(annotation) @@ -410,7 +411,7 @@ def update_wkfl_format(self): if data['wkfl'] != self.get_file(): self.rename(name=data['wkfl']) else: - with open("settings.json", "w") as settings_file: + with open("settings.json", "w", encoding="utf-8") as settings_file: json.dump(data['settings']['settings'], settings_file, indent=4, sort_keys=True) self.rename(name=data['job']) path, _ = self.get_unique_path(name=data['wkfl'], dirname=self.get_dir_name(full=True)) diff --git a/stochss/handlers/workflows.py b/stochss/handlers/workflows.py index bb222d1c64..af5ce1200a 100644 --- a/stochss/handlers/workflows.py +++ b/stochss/handlers/workflows.py @@ -179,7 +179,7 @@ async def get(self): log.debug(f"Exec command sent to the subprocess: {exec_cmd}") log.debug('Sending the workflow run cmd') job = subprocess.Popen(exec_cmd) - with open(os.path.join(path, "RUNNING"), "w") as file: + with open(os.path.join(path, "RUNNING"), "w", encoding="utf-8") as file: file.write(f"Subprocess id: {job.pid}") log.debug('The workflow has started') except StochSSAPIError as err: From 12afe03f7dbaadb41e49a361b2bdb4761b843143 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 16 Sep 2022 16:25:20 -0400 Subject: [PATCH 47/97] Update to fix local clean builds. --- Makefile | 9 ++++----- jupyterhub/Dockerfile.jupyterhub | 15 ++------------- jupyterhub/docker-compose.yml | 3 +-- jupyterhub/jupyterhub_config.py | 28 +++++++++++++++------------- 4 files changed, 22 insertions(+), 33 deletions(-) diff --git a/Makefile b/Makefile index 8201aca602..a4f706ddc8 100644 --- a/Makefile +++ b/Makefile @@ -83,15 +83,14 @@ cert: @echo "Generating certificate..." openssl req -x509 -nodes -days 365 -newkey rsa:2048 -keyout $(SSL_KEY) -out $(SSL_CERT) -build_home_page: -# npm run build-home +create_dep_dirs: + mkdir -p "./userlist" -build_hub: build_home_page check-files network volumes +build_hub: create_dep_dirs check-files network volumes export AUTH_CLASS='' && export OAUTH_FILE='.oauth.dummy.env' && \ docker-compose --env-file jupyterhub/.env -f jupyterhub/docker-compose.yml build - #cd ./jupyterhub && docker-compose build -build_hub_clean: build_home_page check-files network volumes +build_hub_clean: create_dep_dirs check-files network volumes export AUTH_CLASS='' && export OAUTH_FILE='.oauth.dummy.env' && \ docker-compose --env-file jupyterhub/.env -f jupyterhub/docker-compose.yml build --no-cache diff --git a/jupyterhub/Dockerfile.jupyterhub b/jupyterhub/Dockerfile.jupyterhub index 200e526321..e281edb163 100644 --- a/jupyterhub/Dockerfile.jupyterhub +++ b/jupyterhub/Dockerfile.jupyterhub @@ -51,24 +51,13 @@ RUN python3 -m pip install --no-cache-dir \ plotly # build the PUG pages -#WORKDIR /srv/ -#RUN npm install -#RUN npm run build-home - -#COPY static/* /usr/local/share/jupyterhub/static/ -# -#COPY custom/favicon.ico /usr/local/share/jupyterhub/static/favicon.ico -# -#COPY custom/custom.js /opt/stochss-config/.jupyter/custom/custom.js -# -#COPY cull_idle_servers.py /srv/jupyterhub/cull_idle_servers.py - WORKDIR /srv/ COPY . /srv/ + RUN npm install RUN npm run build-home RUN cp /srv/jupyterhub/static/* /usr/local/share/jupyterhub/static/ RUN cp /srv/jupyterhub/custom/favicon.ico /usr/local/share/jupyterhub/static/favicon.ico -# + WORKDIR /srv/jupyterhub CMD ["jupyterhub" "-f" "/srv/jupyterhub/jupyterhub_config.py"] diff --git a/jupyterhub/docker-compose.yml b/jupyterhub/docker-compose.yml index 159dec393d..1b5be3cf16 100644 --- a/jupyterhub/docker-compose.yml +++ b/jupyterhub/docker-compose.yml @@ -30,8 +30,7 @@ services: - "/var/run/docker.sock:/var/run/docker.sock:rw" # Bind Docker volume on host for JupyterHub database and cookie secrets - "data:${DATA_VOLUME_CONTAINER}" - - "/stochss/jupyterhub/presentation_cache/:/srv/jupyterhub/presentation_cache" - - "/stochss/userlist:/srv/userlist" + - "./../userlist:/srv/userlist" ports: - "8000:8000" links: diff --git a/jupyterhub/jupyterhub_config.py b/jupyterhub/jupyterhub_config.py index fec5b8349c..5e3fc117d2 100644 --- a/jupyterhub/jupyterhub_config.py +++ b/jupyterhub/jupyterhub_config.py @@ -211,19 +211,21 @@ def update_users_sets(): c.StochSS.blacklist = blacklist = set([]) pwd = "/srv/userlist" - with open(os.path.join(pwd, 'userlist'), encoding="utf-8") as file_obj: - lines = file_obj.read().strip().split("\n") - for line in lines: - parts = line.split() - if len(parts) > 1: - name = parts[0] - if parts[1] == 'admin': - admin.add(name) - power_users.add(name) - elif parts[1] == 'power': - power_users.add(name) - elif parts[1] == 'blacklist': - blacklist.add(name) + path = os.path.join(pwd, 'userlist') + if os.path.exists(path): + with open(path, encoding="utf-8") as file_obj: + lines = file_obj.read().strip().split("\n") + for line in lines: + parts = line.split() + if len(parts) > 1: + name = parts[0] + if parts[1] == 'admin': + admin.add(name) + power_users.add(name) + elif parts[1] == 'power': + power_users.add(name) + elif parts[1] == 'blacklist': + blacklist.add(name) def get_user_cpu_count_or_fail(): ''' From 48fcf1df691a735c4b7e58cefd79235a02c20c22 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 20 Sep 2022 10:28:52 -0400 Subject: [PATCH 48/97] Added a handler and route for retrieving user messages. --- jupyterhub/handlers.py | 22 ++++++++++++++++++++++ jupyterhub/jupyterhub_config.py | 1 + 2 files changed, 23 insertions(+) diff --git a/jupyterhub/handlers.py b/jupyterhub/handlers.py index 3712ddd6b9..1722014206 100644 --- a/jupyterhub/handlers.py +++ b/jupyterhub/handlers.py @@ -103,3 +103,25 @@ async def get(self): ''' html = self.render_template("multiple-plots-page.html") self.finish(html) + +class MessageAPIHandler(BaseHandler): + ''' + ################################################################################################ + Handler for retrieving user messages. + ################################################################################################ + ''' + async def get(self): + ''' + Get the messages from the message file. + + Attributes + ---------- + ''' + path = "/srv/jupyterhub//userlist/messages.json" + if os.path.exists(path): + with open(path, "r", encoding="utf-8") as msg_file: + message = json.load(msg_file) + else: + message = None + self.write(message) + self.finish() diff --git a/jupyterhub/jupyterhub_config.py b/jupyterhub/jupyterhub_config.py index 5e3fc117d2..4df64443b8 100644 --- a/jupyterhub/jupyterhub_config.py +++ b/jupyterhub/jupyterhub_config.py @@ -92,6 +92,7 @@ # StochSS request handlers c.JupyterHub.extra_handlers = [ (r"/stochss\/?", HomeHandler), + (r"/stochss/api/message\/?", MessageAPIHandler), (r"/stochss/present-job\/?", JobPresentationHandler), (r"/stochss/present-model\/?", ModelPresentationHandler), (r"/stochss/present-notebook\/?", NotebookPresentationHandler), From d0ec9dc8bd1b88c231aa989d449ee4c40e25b5c8 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 20 Sep 2022 10:32:52 -0400 Subject: [PATCH 49/97] Added base function for displaying messages --- client/app.js | 22 +++++++++++++++++++++- client/pages/home.js | 1 + client/templates/pages/home.pug | 2 ++ 3 files changed, 24 insertions(+), 1 deletion(-) diff --git a/client/app.js b/client/app.js index 64e8533a9a..a14e65f337 100644 --- a/client/app.js +++ b/client/app.js @@ -251,6 +251,25 @@ let switchToEditTab = (view, section) => { } } +let maintenance: function () { + getXHR("api/message" { + always: (err, response, body) => { + console.log(body) + } + }); + + // let s_date = new Date("Sep 26, 2022 14:00 EST"); + // let e_date = new Date("Sep 26, 2022 18:00 EST"); + // let day = new Intl.DateTimeFormat('en-US', {weekday: 'short'}).format(s_date); + // let mon = new Intl.DateTimeFormat('en-US', {month: 'short'}).format(s_date); + // let tz = s_date.toString().split('(').pop().split(')')[0]; + // let m_day = `${day} ${mon} ${s_date.getDate()} ${s_date.getFullYear()}`; + // let m_start = `${s_date.getHours()}:00 ${tz}`; + // let m_end = `${e_date.getHours()}:00 ${tz}`; + // let m_time = `${m_day} from ${m_start} to ${m_end}`; + // return `StochSS Live! will be down for scheduled maintenance on ${m_time}`; +} + module.exports = { routePrefix: routePrefix, getApiPath: getApiPath, @@ -265,7 +284,8 @@ module.exports = { documentSetup: documentSetup, copyToClipboard: copyToClipboard, switchToEditTab: switchToEditTab, - validateName: validateName + validateName: validateName, + maintenance: maintenance }; diff --git a/client/pages/home.js b/client/pages/home.js index 2a4353acf6..48fc245599 100644 --- a/client/pages/home.js +++ b/client/pages/home.js @@ -33,6 +33,7 @@ let HomePage = PageView.extend({ 'click [data-hook=registration-link-button]' : 'handleRegistrationLinkClick' }, render: function () { + this.maintenance = app.maintenance(); PageView.prototype.render.apply(this, arguments); //$(this.queryByHook('stochss-logo')).html(graphics['logo']) }, diff --git a/client/templates/pages/home.pug b/client/templates/pages/home.pug index a23a82beb9..974dc4290f 100644 --- a/client/templates/pages/home.pug +++ b/client/templates/pages/home.pug @@ -12,6 +12,8 @@ body p.home-p | An accessible platform for modeling mathematical, biological, and biochemical systems. + div.centered.bg-warning.mb-4(style="background-color: rgba(255, 193, 7, 0.5) !important;") + div.row.home-highlights div.col-md-2 div.col-md-5 From 32e0fc6cde4e757782dfa4f2416774e1d54e49dc Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 20 Sep 2022 10:52:20 -0400 Subject: [PATCH 50/97] Fixed syntax error. --- client/app.js | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/client/app.js b/client/app.js index a14e65f337..6d6b163d33 100644 --- a/client/app.js +++ b/client/app.js @@ -251,8 +251,8 @@ let switchToEditTab = (view, section) => { } } -let maintenance: function () { - getXHR("api/message" { +let maintenance: () => { + getXHR("api/message", { always: (err, response, body) => { console.log(body) } From 09a4cf870765fc14720a37140c3a1f0ca5341661 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 20 Sep 2022 11:04:52 -0400 Subject: [PATCH 51/97] Fixed syntax error. --- client/app.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/client/app.js b/client/app.js index 6d6b163d33..36e43c762a 100644 --- a/client/app.js +++ b/client/app.js @@ -251,7 +251,7 @@ let switchToEditTab = (view, section) => { } } -let maintenance: () => { +let maintenance = () => { getXHR("api/message", { always: (err, response, body) => { console.log(body) From e7bee2153b59bd14283d1d62c7d638cd57c6bfb8 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 20 Sep 2022 11:29:56 -0400 Subject: [PATCH 52/97] Fixed missing import. --- jupyterhub/jupyterhub_config.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/jupyterhub/jupyterhub_config.py b/jupyterhub/jupyterhub_config.py index 4df64443b8..125fa01ee9 100644 --- a/jupyterhub/jupyterhub_config.py +++ b/jupyterhub/jupyterhub_config.py @@ -37,7 +37,7 @@ # Page handlers from handlers import ( HomeHandler, JobPresentationHandler, ModelPresentationHandler, NotebookPresentationHandler, - MultiplePlotsHandler + MultiplePlotsHandler, MessageAPIHandler ) ## Class for authenticating users. From cc21858ae861dd2f64ddb58d1af7a44deb1063a6 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 20 Sep 2022 11:49:48 -0400 Subject: [PATCH 53/97] Added missing dependency. --- client/pages/home.js | 1 + 1 file changed, 1 insertion(+) diff --git a/client/pages/home.js b/client/pages/home.js index 48fc245599..35bea1e8d6 100644 --- a/client/pages/home.js +++ b/client/pages/home.js @@ -17,6 +17,7 @@ along with this program. If not, see . */ let $ = require('jquery'); +let app = require('../app'); let PageView = require('./base'); let graphics = require('../graphics'); let domReady = require('domready'); From ce081c36486ed2c06a0b4911047fdda7654f48af Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 20 Sep 2022 12:07:44 -0400 Subject: [PATCH 54/97] Fixed api path. --- client/app.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/client/app.js b/client/app.js index 36e43c762a..e9a34dddbd 100644 --- a/client/app.js +++ b/client/app.js @@ -252,7 +252,7 @@ let switchToEditTab = (view, section) => { } let maintenance = () => { - getXHR("api/message", { + getXHR("stochss/api/message", { always: (err, response, body) => { console.log(body) } From 061b1295de6995408f74f38db79924d9ff65f613 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 20 Sep 2022 12:27:18 -0400 Subject: [PATCH 55/97] Fixed missing import. --- jupyterhub/handlers.py | 1 + 1 file changed, 1 insertion(+) diff --git a/jupyterhub/handlers.py b/jupyterhub/handlers.py index 1722014206..c9a807247f 100644 --- a/jupyterhub/handlers.py +++ b/jupyterhub/handlers.py @@ -15,6 +15,7 @@ You should have received a copy of the GNU General Public License along with this program. If not, see . ''' +import os from jupyterhub.handlers.base import BaseHandler From 7bc737533cb032f63fc0315d00deaff868a29aa4 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 20 Sep 2022 12:45:44 -0400 Subject: [PATCH 56/97] Fixed response when message file is not found. --- jupyterhub/handlers.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/jupyterhub/handlers.py b/jupyterhub/handlers.py index c9a807247f..98b3406690 100644 --- a/jupyterhub/handlers.py +++ b/jupyterhub/handlers.py @@ -123,6 +123,6 @@ async def get(self): with open(path, "r", encoding="utf-8") as msg_file: message = json.load(msg_file) else: - message = None + message = {} self.write(message) self.finish() From 99b718062dc16af743bc96229eb26d032d2f194a Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 20 Sep 2022 14:33:44 -0400 Subject: [PATCH 57/97] Added post processing for messages. --- client/app.js | 31 ++++++++++++++++++++++++++++++- jupyterhub/handlers.py | 2 +- 2 files changed, 31 insertions(+), 2 deletions(-) diff --git a/client/app.js b/client/app.js index e9a34dddbd..bef40af81f 100644 --- a/client/app.js +++ b/client/app.js @@ -254,7 +254,36 @@ let switchToEditTab = (view, section) => { let maintenance = () => { getXHR("stochss/api/message", { always: (err, response, body) => { - console.log(body) + if(body.length === 0) { console.log(null) } + var html = ``; + body.forEach((data) => { + if(data.start) { + let s_date = new Date(data.start); + let day = new Intl.DateTimeFormat('en-US', {weekday: 'short'}).format(s_date); + let mon = new Intl.DateTimeFormat('en-US', {month: 'short'}).format(s_date); + let s_day = `${day} ${mon} ${s_date.getDate()} ${s_date.getFullYear()}`; + data.message.replace("__DATE__", s_day); + + let tz = s_date.toString().split('(').pop().split(')')[0]; + var minutes = s_date.getMinutes() < 10 ? `0${s_date.getMinutes()}` : s_date.getMinutes(); + let m_start = `${s_date.getHours()}:${minutes} ${tz}`; + data.message.replace("__START__", m_start); + } + if(data.end) { + let e_date = new Date(data.end); + let day = new Intl.DateTimeFormat('en-US', {weekday: 'short'}).format(e_date); + let mon = new Intl.DateTimeFormat('en-US', {month: 'short'}).format(e_date); + let e_day = `${day} ${mon} ${e_date.getDate()} ${e_date.getFullYear()}`; + data.message.replace("__DATE__", e_day); + + let tz = e_date.toString().split('(').pop().split(')')[0]; + var minutes = e_date.getMinutes() < 10 ? `0${e_date.getMinutes()}` : e_date.getMinutes(); + let m_end = `${e_date.getHours()}:${minutes} ${tz}`; + data.message.replace("__END__", m_end); + } + html += `

    ${message}

    `; + }); + console.log(html) } }); diff --git a/jupyterhub/handlers.py b/jupyterhub/handlers.py index 98b3406690..fd2bf190af 100644 --- a/jupyterhub/handlers.py +++ b/jupyterhub/handlers.py @@ -123,6 +123,6 @@ async def get(self): with open(path, "r", encoding="utf-8") as msg_file: message = json.load(msg_file) else: - message = {} + message = [] self.write(message) self.finish() From d29c789eeb0bd5921f511a33d4539e85f13c351f Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 20 Sep 2022 15:02:59 -0400 Subject: [PATCH 58/97] Fixed output for messages. --- client/app.js | 4 ++-- jupyterhub/handlers.py | 6 +++--- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/client/app.js b/client/app.js index bef40af81f..4b6e13e1e9 100644 --- a/client/app.js +++ b/client/app.js @@ -254,9 +254,9 @@ let switchToEditTab = (view, section) => { let maintenance = () => { getXHR("stochss/api/message", { always: (err, response, body) => { - if(body.length === 0) { console.log(null) } + if(body.messages.length === 0) { console.log(null) } var html = ``; - body.forEach((data) => { + body.messages.forEach((data) => { if(data.start) { let s_date = new Date(data.start); let day = new Intl.DateTimeFormat('en-US', {weekday: 'short'}).format(s_date); diff --git a/jupyterhub/handlers.py b/jupyterhub/handlers.py index fd2bf190af..4414c05924 100644 --- a/jupyterhub/handlers.py +++ b/jupyterhub/handlers.py @@ -121,8 +121,8 @@ async def get(self): path = "/srv/jupyterhub//userlist/messages.json" if os.path.exists(path): with open(path, "r", encoding="utf-8") as msg_file: - message = json.load(msg_file) + messages = json.load(msg_file) else: - message = [] - self.write(message) + messages = [] + self.write({"messages": messages}) self.finish() From 2c96c475caf620346c8254c58e1fa4b499d4a40d Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 20 Sep 2022 15:33:27 -0400 Subject: [PATCH 59/97] Fixed path to message file. --- jupyterhub/handlers.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/jupyterhub/handlers.py b/jupyterhub/handlers.py index 4414c05924..81a0a90fd1 100644 --- a/jupyterhub/handlers.py +++ b/jupyterhub/handlers.py @@ -118,7 +118,7 @@ async def get(self): Attributes ---------- ''' - path = "/srv/jupyterhub//userlist/messages.json" + path = "/srv/userlist/messages.json" if os.path.exists(path): with open(path, "r", encoding="utf-8") as msg_file: messages = json.load(msg_file) From e7fc77322a0bc14c67397d93546549d31909c905 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Tue, 20 Sep 2022 15:49:31 -0400 Subject: [PATCH 60/97] Added missing import. --- jupyterhub/handlers.py | 1 + 1 file changed, 1 insertion(+) diff --git a/jupyterhub/handlers.py b/jupyterhub/handlers.py index 81a0a90fd1..ba2a765c3a 100644 --- a/jupyterhub/handlers.py +++ b/jupyterhub/handlers.py @@ -16,6 +16,7 @@ along with this program. If not, see . ''' import os +import json from jupyterhub.handlers.base import BaseHandler From 5720295a3ab79db073dcb668761d5a2042a86e74 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Wed, 21 Sep 2022 08:26:27 -0400 Subject: [PATCH 61/97] Fixed var ref. --- client/app.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/client/app.js b/client/app.js index 4b6e13e1e9..9257977f08 100644 --- a/client/app.js +++ b/client/app.js @@ -281,7 +281,7 @@ let maintenance = () => { let m_end = `${e_date.getHours()}:${minutes} ${tz}`; data.message.replace("__END__", m_end); } - html += `

    ${message}

    `; + html += `

    ${data.message}

    `; }); console.log(html) } From 2816b5caae0d4f52b82359ad9b1262e030c3eb22 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Wed, 21 Sep 2022 08:57:58 -0400 Subject: [PATCH 62/97] Added debug statements. --- client/app.js | 19 ++++++++++++++----- 1 file changed, 14 insertions(+), 5 deletions(-) diff --git a/client/app.js b/client/app.js index 9257977f08..b9535477bc 100644 --- a/client/app.js +++ b/client/app.js @@ -257,31 +257,40 @@ let maintenance = () => { if(body.messages.length === 0) { console.log(null) } var html = ``; body.messages.forEach((data) => { + var message = data.message if(data.start) { let s_date = new Date(data.start); let day = new Intl.DateTimeFormat('en-US', {weekday: 'short'}).format(s_date); let mon = new Intl.DateTimeFormat('en-US', {month: 'short'}).format(s_date); let s_day = `${day} ${mon} ${s_date.getDate()} ${s_date.getFullYear()}`; - data.message.replace("__DATE__", s_day); + console.log(s_day) + message.replace("__DATE__", s_day); + console.log(message) let tz = s_date.toString().split('(').pop().split(')')[0]; var minutes = s_date.getMinutes() < 10 ? `0${s_date.getMinutes()}` : s_date.getMinutes(); let m_start = `${s_date.getHours()}:${minutes} ${tz}`; - data.message.replace("__START__", m_start); + console.log(m_start) + message.replace("__START__", m_start); + console.log(message) } if(data.end) { let e_date = new Date(data.end); let day = new Intl.DateTimeFormat('en-US', {weekday: 'short'}).format(e_date); let mon = new Intl.DateTimeFormat('en-US', {month: 'short'}).format(e_date); let e_day = `${day} ${mon} ${e_date.getDate()} ${e_date.getFullYear()}`; - data.message.replace("__DATE__", e_day); + console.log(e_day) + message.replace("__DATE__", e_day); + console.log(message) let tz = e_date.toString().split('(').pop().split(')')[0]; var minutes = e_date.getMinutes() < 10 ? `0${e_date.getMinutes()}` : e_date.getMinutes(); let m_end = `${e_date.getHours()}:${minutes} ${tz}`; - data.message.replace("__END__", m_end); + console.log(m_end) + message.replace("__END__", m_end); + console.log(message) } - html += `

    ${data.message}

    `; + html += `

    ${message}

    `; }); console.log(html) } From 27eebf1c3d6b53167e3a3ddaca77579d074fd67d Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Wed, 21 Sep 2022 09:25:43 -0400 Subject: [PATCH 63/97] fixed replace statement. --- client/app.js | 19 +++++++++---------- 1 file changed, 9 insertions(+), 10 deletions(-) diff --git a/client/app.js b/client/app.js index b9535477bc..cf5c8d98be 100644 --- a/client/app.js +++ b/client/app.js @@ -257,22 +257,21 @@ let maintenance = () => { if(body.messages.length === 0) { console.log(null) } var html = ``; body.messages.forEach((data) => { - var message = data.message if(data.start) { let s_date = new Date(data.start); let day = new Intl.DateTimeFormat('en-US', {weekday: 'short'}).format(s_date); let mon = new Intl.DateTimeFormat('en-US', {month: 'short'}).format(s_date); let s_day = `${day} ${mon} ${s_date.getDate()} ${s_date.getFullYear()}`; console.log(s_day) - message.replace("__DATE__", s_day); - console.log(message) + data.message = data.message.replace("__DATE__", s_day); + console.log(data.message) let tz = s_date.toString().split('(').pop().split(')')[0]; var minutes = s_date.getMinutes() < 10 ? `0${s_date.getMinutes()}` : s_date.getMinutes(); let m_start = `${s_date.getHours()}:${minutes} ${tz}`; console.log(m_start) - message.replace("__START__", m_start); - console.log(message) + data.message = data.message.replace("__START__", m_start); + console.log(data.message) } if(data.end) { let e_date = new Date(data.end); @@ -280,17 +279,17 @@ let maintenance = () => { let mon = new Intl.DateTimeFormat('en-US', {month: 'short'}).format(e_date); let e_day = `${day} ${mon} ${e_date.getDate()} ${e_date.getFullYear()}`; console.log(e_day) - message.replace("__DATE__", e_day); - console.log(message) + data.message = data.message.replace("__DATE__", e_day); + console.log(data.message) let tz = e_date.toString().split('(').pop().split(')')[0]; var minutes = e_date.getMinutes() < 10 ? `0${e_date.getMinutes()}` : e_date.getMinutes(); let m_end = `${e_date.getHours()}:${minutes} ${tz}`; console.log(m_end) - message.replace("__END__", m_end); - console.log(message) + data.message = data.message.replace("__END__", m_end); + console.log(data.message) } - html += `

    ${message}

    `; + html += `

    ${data.message}

    `; }); console.log(html) } From dbd93a5d6a7056c82d8c12f966c4950f635ceb75 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Wed, 21 Sep 2022 10:56:23 -0400 Subject: [PATCH 64/97] Added style customizations. Added message html to page. --- client/app.js | 31 ++++++++++++++++++++----------- client/pages/home.js | 3 +-- client/templates/pages/home.pug | 2 +- 3 files changed, 22 insertions(+), 14 deletions(-) diff --git a/client/app.js b/client/app.js index cf5c8d98be..b9164ef866 100644 --- a/client/app.js +++ b/client/app.js @@ -251,47 +251,56 @@ let switchToEditTab = (view, section) => { } } -let maintenance = () => { +let maintenance = (view) => { getXHR("stochss/api/message", { always: (err, response, body) => { if(body.messages.length === 0) { console.log(null) } var html = ``; body.messages.forEach((data) => { + let styles = { + "primary": "background-color: rgba(0, 123, 255, 0.5) !important;", + "secondary": "background-color: rgba(108, 117, 125, 0.5) !important;", + "light": "background-color: rgba(248, 249, 250, 0.5) !important;", + "dark": "background-color: rgba(52, 58, 64, 0.5) !important;", + "success": "background-color: rgba(40, 167, 69, 0.5) !important;", + "info": "background-color: rgba(23, 162, 184, 0.5) !important;", + "warning": "background-color: rgba(255, 193, 7, 0.5) !important;", + "danger": "background-color: rgba(220, 53, 69, 0.5) !important;" + } if(data.start) { let s_date = new Date(data.start); let day = new Intl.DateTimeFormat('en-US', {weekday: 'short'}).format(s_date); let mon = new Intl.DateTimeFormat('en-US', {month: 'short'}).format(s_date); let s_day = `${day} ${mon} ${s_date.getDate()} ${s_date.getFullYear()}`; - console.log(s_day) data.message = data.message.replace("__DATE__", s_day); - console.log(data.message) let tz = s_date.toString().split('(').pop().split(')')[0]; var minutes = s_date.getMinutes() < 10 ? `0${s_date.getMinutes()}` : s_date.getMinutes(); let m_start = `${s_date.getHours()}:${minutes} ${tz}`; - console.log(m_start) data.message = data.message.replace("__START__", m_start); - console.log(data.message) } if(data.end) { let e_date = new Date(data.end); let day = new Intl.DateTimeFormat('en-US', {weekday: 'short'}).format(e_date); let mon = new Intl.DateTimeFormat('en-US', {month: 'short'}).format(e_date); let e_day = `${day} ${mon} ${e_date.getDate()} ${e_date.getFullYear()}`; - console.log(e_day) data.message = data.message.replace("__DATE__", e_day); - console.log(data.message) let tz = e_date.toString().split('(').pop().split(')')[0]; var minutes = e_date.getMinutes() < 10 ? `0${e_date.getMinutes()}` : e_date.getMinutes(); let m_end = `${e_date.getHours()}:${minutes} ${tz}`; - console.log(m_end) data.message = data.message.replace("__END__", m_end); - console.log(data.message) } - html += `

    ${data.message}

    `; + if(!data.style) { + var style = styles.warning; + }else if(Object.keys(styles).includes(data.style)) { + var style = styles[data.style]; + }else { + var style = date.style; + } + html += `

    ${data.message} style='${style}'

    `; }); - console.log(html) + $(view.queryByHook('message-to-users')).html(html); } }); diff --git a/client/pages/home.js b/client/pages/home.js index 35bea1e8d6..0dc762a273 100644 --- a/client/pages/home.js +++ b/client/pages/home.js @@ -34,9 +34,8 @@ let HomePage = PageView.extend({ 'click [data-hook=registration-link-button]' : 'handleRegistrationLinkClick' }, render: function () { - this.maintenance = app.maintenance(); PageView.prototype.render.apply(this, arguments); - //$(this.queryByHook('stochss-logo')).html(graphics['logo']) + app.maintenance(this); }, handleRegistrationLinkClick: function () { $(this.queryByHook("registration-form")).collapse('show'); diff --git a/client/templates/pages/home.pug b/client/templates/pages/home.pug index 974dc4290f..55f2277372 100644 --- a/client/templates/pages/home.pug +++ b/client/templates/pages/home.pug @@ -12,7 +12,7 @@ body p.home-p | An accessible platform for modeling mathematical, biological, and biochemical systems. - div.centered.bg-warning.mb-4(style="background-color: rgba(255, 193, 7, 0.5) !important;") + div.centered.mb-4(data-hook="message-to-users") div.row.home-highlights div.col-md-2 From 3103c0106a2a91fe3116d50953cca3f5295b0b80 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Wed, 21 Sep 2022 11:15:13 -0400 Subject: [PATCH 65/97] Fixed typo. --- client/app.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/client/app.js b/client/app.js index b9164ef866..97661552b6 100644 --- a/client/app.js +++ b/client/app.js @@ -296,7 +296,7 @@ let maintenance = (view) => { }else if(Object.keys(styles).includes(data.style)) { var style = styles[data.style]; }else { - var style = date.style; + var style = data.style; } html += `

    ${data.message} style='${style}'

    `; }); From da83b683dd353283034f953e1e1353a25a61c664 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Wed, 21 Sep 2022 11:40:30 -0400 Subject: [PATCH 66/97] Fixed style placement. removed commented code. --- client/app.js | 13 +------------ 1 file changed, 1 insertion(+), 12 deletions(-) diff --git a/client/app.js b/client/app.js index 97661552b6..65275f7076 100644 --- a/client/app.js +++ b/client/app.js @@ -298,22 +298,11 @@ let maintenance = (view) => { }else { var style = data.style; } - html += `

    ${data.message} style='${style}'

    `; + html += `

    ${data.message}

    `; }); $(view.queryByHook('message-to-users')).html(html); } }); - - // let s_date = new Date("Sep 26, 2022 14:00 EST"); - // let e_date = new Date("Sep 26, 2022 18:00 EST"); - // let day = new Intl.DateTimeFormat('en-US', {weekday: 'short'}).format(s_date); - // let mon = new Intl.DateTimeFormat('en-US', {month: 'short'}).format(s_date); - // let tz = s_date.toString().split('(').pop().split(')')[0]; - // let m_day = `${day} ${mon} ${s_date.getDate()} ${s_date.getFullYear()}`; - // let m_start = `${s_date.getHours()}:00 ${tz}`; - // let m_end = `${e_date.getHours()}:00 ${tz}`; - // let m_time = `${m_day} from ${m_start} to ${m_end}`; - // return `StochSS Live! will be down for scheduled maintenance on ${m_time}`; } module.exports = { From 1b3516426ed5b21250fa81e16408ee2ecb795d78 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Wed, 21 Sep 2022 12:55:23 -0400 Subject: [PATCH 67/97] Added documentation to the readme to allow other hub managers to add messages. --- README.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 758a0fdaf2..a63148dfbe 100644 --- a/README.md +++ b/README.md @@ -57,10 +57,12 @@ StochSS uses [JupyterHub](https://jupyterhub.readthedocs.io/en/stable/#) as the - In addition to the single-user requirements, you will need [Docker Compose](https://docs.docker.com/compose/install/). -- [Optional] To set admins for JupyterHub, make a file called `userlist` in the `jupyterhub/` directory. On each line of this file place a username followed by the word 'admin'. For example: `myuser admin`. If using Google OAuth, the uesername will be a Gmail address. Navigate to `/hub/admin` to use the JupyterHub admin interface. +- [Optional] To set admins for JupyterHub, make a file called `userlist` in the `userlist/` directory. On each line of this file place a username followed by the word 'admin'. For example: `myuser admin`. If using Google OAuth, the uesername will be a Gmail address. Navigate to `/hub/admin` to use the JupyterHub admin interface. - [Optional] By default multi-user StochSS is set up to allocate 2 logical cpus per user, reserving 2 logical cpus for the hub container and underlying OS. You can define "power users" that are excluded from resource limitations using the same method as above for adding an admin, but instead of following the username with 'admin', use the keyword 'power' instead. +- [Optional] To disseminate messages to all users, make a JSON decodable file called `messages` in the `userlist/` directory. The contents of the `messages` file should be formatted as a list of dictionaries defining each message. Accepted keys are `message`, string containing the message to be display with tags for dates and time i.e. `StochSS Live! will be down for scheduled maintenance on __DATE__ from __START__ to __END__` an additional `__DATE__` tag can be added if the start and end dates differ, `start`, string representing the starting date and time i.e. `Sep 26, 2022 14:00 EST`, `end`, string representing the ending date and time i.e. `Sep 26, 2022 18:00 EST`, and `style`, a string containing a background color keyword i.e. `warning` or css i.e. `background-color: rgba(160, 32, 240, 0.5) !important;`. + ### Run Locally To run JupyterHub locally run `make hub` and go to `http://127.0.0.1:8000/` . From fca3379fcf74d91ffe6c5c9b4b20b6d7fcc98dd6 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 11:06:44 -0400 Subject: [PATCH 68/97] Added contain function to reaction model to support filtering. --- client/models/reaction.js | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) diff --git a/client/models/reaction.js b/client/models/reaction.js index 262103d508..8306e8d72c 100644 --- a/client/models/reaction.js +++ b/client/models/reaction.js @@ -164,6 +164,41 @@ module.exports = State.extend({ } this.hasConflict = Boolean(hasContinuous && (hasDynamic || hasDiscrete)) }, + contains: function (attr, key) { + if(key === null) { return true; } + + let reactants = this.reactants.map((reactant) => { return reactant.specie.name; }); + let products = this.products.map((product) => { return product.specie.name; }); + + let checks = { + 'name': this.name.includes(key), + 'reactiontype': this.reactionType === key, + 'massaction': key === "massaction" && this.massaction, + 'reactants': reactants.includes(key), + 'products': products.includes(key), + 'propensity': this.reactionType === "custom-propensity" && this.propensity.includes(key), + 'odepropensity': this.reactionType === "custom-propensity" && this.odePropensity.includes(key), + 'rate': this.reactionType !== "custom-propensity" && this.rate.name === key, + 'types': this.types && this.types.includes(key) + } + + if(attr !== null) { + checks['reactantsproducts'] = checks.reactants || checks.products; + checks['propensities'] = checks.propensity || checks.odepropensity; + let otherAttrs = { + 'stochasticpropensityfunction': 'propensity', 'odepropensityfunction': 'odePropensity', + 'rateparameter': 'rate','rateconstant': 'rate', 'stoichspecies': 'reactantsproducts' + } + if(Object.keys(otherAttrs).includes(attr)) { + attr = otherAttrs[attr]; + } + return checks[attr]; + } + for(let attribute in checks) { + if(checks[attribute]) { return true; } + } + return false; + }, updateReactionType: function () { if(!this.massaction) { return "custom-propensity" From 161b52c5b035c06d5c6809fb97dad38a83324922 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 11:07:26 -0400 Subject: [PATCH 69/97] Added filter function to reactions section. --- client/model-view/templates/reactionsView.pug | 4 +- client/model-view/views/reactions-view.js | 42 ++++++++++++++++--- 2 files changed, 40 insertions(+), 6 deletions(-) diff --git a/client/model-view/templates/reactionsView.pug b/client/model-view/templates/reactionsView.pug index e32bec78cd..218f4a7e8f 100644 --- a/client/model-view/templates/reactionsView.pug +++ b/client/model-view/templates/reactionsView.pug @@ -16,7 +16,9 @@ div#reactions-editor.card a.nav-link.tab(data-hook="reactions-view-tab" data-toggle="tab" href="#view-reactions") View - button.btn.btn-outline-collapse(data-toggle="collapse" data-target="#collapse-reaction" data-hook="collapse") + + button.btn.btn-outline-collapse.inline(data-toggle="collapse" data-target="#collapse-reaction" data-hook="collapse") + + + div.inline(data-hook="reaction-filter" style="float: right;") div.card-body diff --git a/client/model-view/views/reactions-view.js b/client/model-view/views/reactions-view.js index f0ffd3c0c1..43e3bb05eb 100644 --- a/client/model-view/views/reactions-view.js +++ b/client/model-view/views/reactions-view.js @@ -24,6 +24,7 @@ let Tooltips = require('../../tooltips'); let ReactionTypes = require('../../reaction-types'); //views let View = require('ampersand-view'); +let InputView = require('../../views/input'); let ReactionView = require('./reaction-view'); //templates let template = require('../templates/reactionsView.pug'); @@ -40,7 +41,8 @@ module.exports = View.extend({ 'click [data-hook=four]' : 'handleAddReactionClick', 'click [data-hook=custom-massaction]' : 'handleAddReactionClick', 'click [data-hook=custom-propensity]' : 'handleAddReactionClick', - 'click [data-hook=collapse]' : 'changeCollapseButtonText' + 'click [data-hook=collapse]' : 'changeCollapseButtonText', + 'change [data-hook=reaction-filter]' : 'filterReactions' }, initialize: function (attrs, options) { View.prototype.initialize.apply(this, arguments); @@ -79,6 +81,17 @@ module.exports = View.extend({ changeCollapseButtonText: function (e) { app.changeCollapseButtonText(this, e); }, + filterReactions: function (e) { + var key = e.target.value === "" ? null : e.target.value; + var attr = null; + if(key && key.includes(':')) { + let attrKey = key.split(':'); + attr = attrKey[0].toLowerCase().replace(/ /g, ''); + key = attrKey[1]; + } + this.renderEditReactionView({'key': key, 'attr': attr}); + this.renderViewReactionView({'key': key, 'attr': attr}); + }, getStoichArgsForReactionType: function(type) { return ReactionTypes[type]; }, @@ -120,14 +133,16 @@ module.exports = View.extend({ reactionView.openReactionDetails(); } }, - renderEditReactionView: function () { + renderEditReactionView: function ({key=null, attr=null}={}) { if(this.editReactionView){ this.editReactionView.remove(); } + let options = {filter: (model) => { return model.contains(attr, key); }} this.editReactionView = this.renderCollection( this.collection, ReactionView, - this.queryByHook('edit-reaction-list') + this.queryByHook('edit-reaction-list'), + options ); app.tooltipSetup(); }, @@ -144,7 +159,7 @@ module.exports = View.extend({ katex.render(ReactionTypes['split'].label, this.queryByHook('split-lb1'), options); katex.render(ReactionTypes['four'].label, this.queryByHook('four-lb1'), options); }, - renderViewReactionView: function () { + renderViewReactionView: function ({key=null, attr=null}={}) { if(this.viewReactionView){ this.viewReactionView.remove(); } @@ -157,7 +172,10 @@ module.exports = View.extend({ }else{ $(this.queryByHook("reaction-annotation-header")).css("display", "block"); } - let options = {viewOptions: {viewMode: true, hasAnnotations: this.containsMdlWithAnn}} + let options = { + viewOptions: {viewMode: true, hasAnnotations: this.containsMdlWithAnn}, + filter: (model) => { return model.contains(attr, key); } + } this.viewReactionView = this.renderCollection( this.collection, ReactionView, @@ -197,4 +215,18 @@ module.exports = View.extend({ $(this.queryByHook('massaction-message')).prop('hidden', !disableTypes); }, updateValid: function () {}, + subviews: { + filter: { + hook: 'reaction-filter', + prepareView: function (el) { + return new InputView({ + parent: this, + required: false, + name: 'filter', + valueType: 'string', + placeholder: 'filter' + }); + } + } + } }); \ No newline at end of file From 5ccd78369e7f5529ff1c1f49d4ac1756b99371b0 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 11:53:23 -0400 Subject: [PATCH 70/97] Added contain function to species model to support filtering. --- client/models/specie.js | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/client/models/specie.js b/client/models/specie.js index 0a1f23b31d..ed68c8677d 100644 --- a/client/models/specie.js +++ b/client/models/specie.js @@ -42,6 +42,35 @@ module.exports = State.extend({ initialize: function (attrs, options) { State.prototype.initialize.apply(this, arguments); }, + contains: function (attr, key) { + if(key === null) { return true; } + + let checks = { + 'name': this.name.includes(key), + 'value': this.value === Number(key), + 'mode': this.mode === key, + 'switchTol': this.isSwitchTol && this.switchTol === Number(key), + 'switchMin': !this.isSwitchTol && this.switchMin === Number(key), + 'diffusionConst': this.diffusionConst === Number(key), + 'types': this.types && this.types.includes(key) + } + + if(attr !== null) { + let otherAttrs = { + 'initialcondition': 'value', 'initialvalue': 'value', + 'switchingtolerance': 'switchTol', + 'minimumvalueforswitching': 'switchMin' + } + if(Object.keys(otherAttrs).includes(attr)) { + attr = otherAttrs[attr]; + } + return checks[attr]; + } + for(let attribute in checks) { + if(checks[attribute]) { return true; } + } + return false; + }, validateComponent: function () { if(!this.name.trim() || this.name.match(/^\d/)) return false; if((!/^[a-zA-Z0-9_]+$/.test(this.name))) return false; From b367c5d82801ffe56ae95faa8803d90b7376e780 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 11:54:04 -0400 Subject: [PATCH 71/97] Added filter function to species section. --- client/model-view/templates/speciesView.pug | 4 +- client/model-view/views/species-view.js | 45 ++++++++++++++++++--- 2 files changed, 42 insertions(+), 7 deletions(-) diff --git a/client/model-view/templates/speciesView.pug b/client/model-view/templates/speciesView.pug index 0c0ae48995..5cc6ad9ed3 100644 --- a/client/model-view/templates/speciesView.pug +++ b/client/model-view/templates/speciesView.pug @@ -16,7 +16,9 @@ div#species-editor.card a.nav-link.tab(data-hook="species-view-tab" data-toggle="tab" href="#view-species") View - button.btn.btn-outline-collapse(data-toggle="collapse" data-target="#collapse-species" data-hook="collapse") - + button.btn.btn-outline-collapse.inline(data-toggle="collapse" data-target="#collapse-species" data-hook="collapse") - + + div.inline(data-hook="species-filter" style="float: right;") div.card-body p.mb-0 diff --git a/client/model-view/views/species-view.js b/client/model-view/views/species-view.js index a00e004cdb..78d1a3713d 100644 --- a/client/model-view/views/species-view.js +++ b/client/model-view/views/species-view.js @@ -23,6 +23,7 @@ let Tooltips = require('../../tooltips'); //views let View = require('ampersand-view'); let SpecieView = require('./specie-view'); +let InputView = require('../../views/input'); //templates let speciesTemplate = require('../templates/speciesView.pug'); let spatialSpeciesTemplate = require('../templates/spatialSpeciesView.pug'); @@ -30,7 +31,8 @@ let spatialSpeciesTemplate = require('../templates/spatialSpeciesView.pug'); module.exports = View.extend({ events: { 'click [data-hook=collapse]' : 'changeCollapseButtonText', - 'click [data-hook=add-species]' : 'handleAddSpeciesClick' + 'click [data-hook=add-species]' : 'handleAddSpeciesClick', + 'change [data-hook=species-filter]' : 'filterSpecies' }, initialize: function (attrs, options) { View.prototype.initialize.apply(this, arguments); @@ -112,6 +114,17 @@ module.exports = View.extend({ changeCollapseButtonText: function (e) { app.changeCollapseButtonText(this, e); }, + filterSpecies: function (e) { + var key = e.target.value === "" ? null : e.target.value; + var attr = null; + if(key && key.includes(':')) { + let attrKey = key.split(':'); + attr = attrKey[0].toLowerCase().replace(/ /g, ''); + key = attrKey[1]; + } + this.renderEditSpeciesView({'key': key, 'attr': attr}); + this.renderViewSpeciesView({'key': key, 'attr': attr}); + }, handleAddSpeciesClick: function (e) { let self = this; let defaultMode = this.collection.parent.defaultMode; @@ -129,19 +142,20 @@ module.exports = View.extend({ } app.switchToEditTab(this, "species"); }, - renderEditSpeciesView: function () { + renderEditSpeciesView: function ({key=null, attr=null}={}) { if(this.editSpeciesView){ this.editSpeciesView.remove(); } - let options = {viewOptions: {parent: this}}; + let options = {filter: (model) => { return model.contains(attr, key); }} this.editSpeciesView = this.renderCollection( this.collection, SpecieView, - this.queryByHook('edit-specie-list') + this.queryByHook('edit-specie-list'), + options ); app.tooltipSetup(); }, - renderViewSpeciesView: function () { + renderViewSpeciesView: function ({key=null, attr=null}={}) { if(this.viewSpeciesView){ this.viewSpeciesView.remove(); } @@ -156,7 +170,10 @@ module.exports = View.extend({ }else{ $(this.queryByHook("species-annotation-header")).css("display", "block"); } - let options = {viewOptions: {parent: this, viewMode: true}}; + let options = { + viewOptions: {parent: this, viewMode: true}, + filter: (model) => { return model.contains(attr, key); } + }; this.viewSpeciesView = this.renderCollection( this.collection, SpecieView, @@ -175,5 +192,21 @@ module.exports = View.extend({ errorMsg.addClass('component-valid'); errorMsg.removeClass('component-invalid'); } + }, + update: function () {}, + updateValid: function () {}, + subviews: { + filter: { + hook: 'species-filter', + prepareView: function (el) { + return new InputView({ + parent: this, + required: false, + name: 'filter', + valueType: 'string', + placeholder: 'filter' + }); + } + } } }); From c46ccc8dfcee6c43fc92a3126fc7c4f8aea6370f Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 12:36:21 -0400 Subject: [PATCH 72/97] Added spatial support for species filtering. --- client/model-view/templates/spatialSpeciesView.pug | 4 +++- client/models/specie.js | 9 ++++++++- 2 files changed, 11 insertions(+), 2 deletions(-) diff --git a/client/model-view/templates/spatialSpeciesView.pug b/client/model-view/templates/spatialSpeciesView.pug index ae24b9fc88..5fb3ad0007 100644 --- a/client/model-view/templates/spatialSpeciesView.pug +++ b/client/model-view/templates/spatialSpeciesView.pug @@ -16,7 +16,9 @@ div#species-editor.card a.nav-link.tab(data-hook="species-view-tab" data-toggle="tab" href="#view-species") View - button.btn.btn-outline-collapse(data-toggle="collapse" data-target="#collapse-species" data-hook="collapse") - + button.btn.btn-outline-collapse.inline(data-toggle="collapse" data-target="#collapse-species" data-hook="collapse") - + + div.inline(data-hook="species-filter" style="float: right;") div.card-body p.mb-0 diff --git a/client/models/specie.js b/client/models/specie.js index ed68c8677d..b20ac5416a 100644 --- a/client/models/specie.js +++ b/client/models/specie.js @@ -45,6 +45,13 @@ module.exports = State.extend({ contains: function (attr, key) { if(key === null) { return true; } + let types = [] + if(this.types) { + this.types.forEach((typeID) => { + types.push(this.collection.parent.domain.types.get(typeID, "typeID").name); + }); + } + let checks = { 'name': this.name.includes(key), 'value': this.value === Number(key), @@ -52,7 +59,7 @@ module.exports = State.extend({ 'switchTol': this.isSwitchTol && this.switchTol === Number(key), 'switchMin': !this.isSwitchTol && this.switchMin === Number(key), 'diffusionConst': this.diffusionConst === Number(key), - 'types': this.types && this.types.includes(key) + 'types': types.includes(key) } if(attr !== null) { From f91222d8d10d0f09b760fdd449efe5d918ae893c Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 12:37:43 -0400 Subject: [PATCH 73/97] Added spatial support for reaction filtering. --- client/models/reaction.js | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/client/models/reaction.js b/client/models/reaction.js index 8306e8d72c..be17aa5242 100644 --- a/client/models/reaction.js +++ b/client/models/reaction.js @@ -169,6 +169,12 @@ module.exports = State.extend({ let reactants = this.reactants.map((reactant) => { return reactant.specie.name; }); let products = this.products.map((product) => { return product.specie.name; }); + let types = [] + if(this.types) { + this.types.forEach((typeID) => { + types.push(this.collection.parent.domain.types.get(typeID, "typeID").name); + }); + } let checks = { 'name': this.name.includes(key), @@ -179,7 +185,7 @@ module.exports = State.extend({ 'propensity': this.reactionType === "custom-propensity" && this.propensity.includes(key), 'odepropensity': this.reactionType === "custom-propensity" && this.odePropensity.includes(key), 'rate': this.reactionType !== "custom-propensity" && this.rate.name === key, - 'types': this.types && this.types.includes(key) + 'types': types.includes(key) } if(attr !== null) { From bf8789b95b61f1e3ec592f3d9b9fa3a3596124a2 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 13:02:19 -0400 Subject: [PATCH 74/97] Added contains function to the parameter model to support filtering. --- client/models/parameter.js | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/client/models/parameter.js b/client/models/parameter.js index cf74ff0b15..a617b43bb7 100644 --- a/client/models/parameter.js +++ b/client/models/parameter.js @@ -36,6 +36,26 @@ module.exports = State.extend({ initialize: function (attrs, options) { State.prototype.initialize.apply(this, arguments); }, + contains: function (attr, key) { + if(key === null) { return true; } + + let checks = { + 'name': this.name.includes(key), + 'expression': this.expression === Number(key) + } + + if(attr !== null) { + let otherAttrs = { 'value': 'expression' } + if(Object.keys(otherAttrs).includes(attr)) { + attr = otherAttrs[attr]; + } + return checks[attr]; + } + for(let attribute in checks) { + if(checks[attribute]) { return true; } + } + return false; + }, validateComponent: function () { if(!this.name.trim() || this.name.match(/^\d/)) return false; if((!/^[a-zA-Z0-9_]+$/.test(this.name))) return false; From 53ce1af5ac03dcfdcf7062f01a5a3cf715471e6d Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 13:03:42 -0400 Subject: [PATCH 75/97] Added filter function to the parameter section. --- .../model-view/templates/parametersView.pug | 4 +- client/model-view/views/parameters-view.js | 44 ++++++++++++++++--- 2 files changed, 42 insertions(+), 6 deletions(-) diff --git a/client/model-view/templates/parametersView.pug b/client/model-view/templates/parametersView.pug index 5d2c5af0d6..cca22f8b5b 100644 --- a/client/model-view/templates/parametersView.pug +++ b/client/model-view/templates/parametersView.pug @@ -16,7 +16,9 @@ div#parameters-editor.card a.nav-link.tab(data-hook="parameters-view-tab" data-toggle="tab" href="#view-parameters") View - button.btn.btn-outline-collapse(data-toggle="collapse" data-target="#collapse-parameters" data-hook="collapse") + + button.btn.btn-outline-collapse.inline(data-toggle="collapse" data-target="#collapse-parameters" data-hook="collapse") + + + div.inline(data-hook="parameter-filter" style="float: right;") div.card-body p.mb-0 diff --git a/client/model-view/views/parameters-view.js b/client/model-view/views/parameters-view.js index c9c95b6e9b..68e122eb1d 100644 --- a/client/model-view/views/parameters-view.js +++ b/client/model-view/views/parameters-view.js @@ -22,6 +22,7 @@ let app = require('../../app'); let Tooltips = require('../../tooltips'); //views let View = require('ampersand-view'); +let InputView = require('../../views/input'); let EditParameterView = require('./parameter-view'); //templates let template = require('../templates/parametersView.pug'); @@ -31,6 +32,7 @@ module.exports = View.extend({ events: { 'click [data-hook=add-parameter]' : 'addParameter', 'click [data-hook=collapse]' : 'changeCollapseButtonText', + 'change [data-hook=parameter-filter]' : 'filterParameters' }, initialize: function (attrs, options) { View.prototype.initialize.apply(this, arguments); @@ -88,6 +90,19 @@ module.exports = View.extend({ changeCollapseButtonText: function (e) { app.changeCollapseButtonText(this, e); }, + filterParameters: function (e) { + var key = e.target.value === "" ? null : e.target.value; + var attr = null; + if(key && key.includes(':')) { + let attrKey = key.split(':'); + attr = attrKey[0].toLowerCase().replace(/ /g, ''); + key = attrKey[1]; + } + if(!this.readOnly) { + this.renderEditParameter({'key': key, 'attr': attr}); + } + this.renderViewParameter({'key': key, 'attr': attr}); + }, openSection: function () { if(!$(this.queryByHook("parameters-list-container")).hasClass("show")) { let paramCollapseBtn = $(this.queryByHook("collapse")); @@ -96,17 +111,19 @@ module.exports = View.extend({ } app.switchToEditTab(this, "parameters"); }, - renderEditParameter: function () { + renderEditParameter: function ({key=null, attr=null}={}) { if(this.editParameterView){ this.editParameterView.remove(); } + let options = {filter: (model) => { return model.contains(attr, key); }} this.editParameterView = this.renderCollection( this.collection, EditParameterView, - this.queryByHook('edit-parameter-list') + this.queryByHook('edit-parameter-list'), + options ); }, - renderViewParameter: function () { + renderViewParameter: function ({key=null, attr=null}={}) { if(this.viewParameterView) { this.viewParameterView.remove(); } @@ -116,7 +133,10 @@ module.exports = View.extend({ }else{ $(this.queryByHook("parameters-annotation-header")).css("display", "block"); } - let options = {viewOptions: {viewMode: true}}; + let options = { + viewOptions: {viewMode: true, hasAnnotations: this.containsMdlWithAnn}, + filter: (model) => { return model.contains(attr, key); } + } this.viewParameterView = this.renderCollection( this.collection, EditParameterView, @@ -125,5 +145,19 @@ module.exports = View.extend({ ); }, update: function () {}, - updateValid: function () {} + updateValid: function () {}, + subviews: { + filter: { + hook: 'parameter-filter', + prepareView: function (el) { + return new InputView({ + parent: this, + required: false, + name: 'filter', + valueType: 'string', + placeholder: 'filter' + }); + } + } + } }); \ No newline at end of file From c9493b917d6aaf2f2e992076551bae9d8b7def7a Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 13:07:10 -0400 Subject: [PATCH 76/97] Fixed filter rendering for read only mode. --- client/model-view/views/reactions-view.js | 4 +++- client/model-view/views/species-view.js | 4 +++- 2 files changed, 6 insertions(+), 2 deletions(-) diff --git a/client/model-view/views/reactions-view.js b/client/model-view/views/reactions-view.js index 43e3bb05eb..a6c36c02fb 100644 --- a/client/model-view/views/reactions-view.js +++ b/client/model-view/views/reactions-view.js @@ -89,7 +89,9 @@ module.exports = View.extend({ attr = attrKey[0].toLowerCase().replace(/ /g, ''); key = attrKey[1]; } - this.renderEditReactionView({'key': key, 'attr': attr}); + if(this.readOnly) { + this.renderEditReactionView({'key': key, 'attr': attr}); + } this.renderViewReactionView({'key': key, 'attr': attr}); }, getStoichArgsForReactionType: function(type) { diff --git a/client/model-view/views/species-view.js b/client/model-view/views/species-view.js index 78d1a3713d..a1d432e2e4 100644 --- a/client/model-view/views/species-view.js +++ b/client/model-view/views/species-view.js @@ -122,7 +122,9 @@ module.exports = View.extend({ attr = attrKey[0].toLowerCase().replace(/ /g, ''); key = attrKey[1]; } - this.renderEditSpeciesView({'key': key, 'attr': attr}); + if(this.readOnly) { + this.renderEditSpeciesView({'key': key, 'attr': attr}); + } this.renderViewSpeciesView({'key': key, 'attr': attr}); }, handleAddSpeciesClick: function (e) { From cc20917db1363cde0d8065d6797cf494bc9393ec Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 13:33:17 -0400 Subject: [PATCH 77/97] Added a contains function to the rule model to support filtering. --- client/models/rule.js | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/client/models/rule.js b/client/models/rule.js index 279e450e34..aeebe6bea0 100644 --- a/client/models/rule.js +++ b/client/models/rule.js @@ -31,6 +31,28 @@ module.exports = State.extend({ initialize: function (attrs, options) { State.prototype.initialize.apply(this, arguments); }, + contains: function (attr, key) { + if(key === null) { return true; } + + let checks = { + 'name': this.name.includes(key), + 'type': this.type === key, + 'variable': this.variable.name === key, + 'expression': this.expression.includes(key) + } + + if(attr !== null) { + let otherAttrs = { 'target': 'variable', 'formula': 'expression' } + if(Object.keys(otherAttrs).includes(attr)) { + attr = otherAttrs[attr]; + } + return checks[attr]; + } + for(let attribute in checks) { + if(checks[attribute]) { return true; } + } + return false; + }, validateComponent: function () { if(!this.name.trim() || this.name.match(/^\d/)) return false; if((!/^[a-zA-Z0-9_]+$/.test(this.name))) return false; From d2d60308e053964a5596bc8f5afe577476211c26 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 13:34:14 -0400 Subject: [PATCH 78/97] Added a filter function to the rules section. --- client/model-view/templates/rulesView.pug | 4 +- client/model-view/views/rules-view.js | 46 ++++++++++++++++++++--- 2 files changed, 43 insertions(+), 7 deletions(-) diff --git a/client/model-view/templates/rulesView.pug b/client/model-view/templates/rulesView.pug index cef582813f..353b6073f8 100644 --- a/client/model-view/templates/rulesView.pug +++ b/client/model-view/templates/rulesView.pug @@ -16,7 +16,9 @@ div#rules-editor.card a.nav-link.tab(data-hook="rules-view-tab" data-toggle="tab" href="#view-rules") View - button.btn.btn-outline-collapse(data-toggle="collapse", data-target="#collapse-rules", data-hook="collapse") + + button.btn.btn-outline-collapse.inline(data-toggle="collapse", data-target="#collapse-rules", data-hook="collapse") + + + div.inline(data-hook="rule-filter" style="float: right;") div.card-body p.mb-0 diff --git a/client/model-view/views/rules-view.js b/client/model-view/views/rules-view.js index 4d1412a649..00870f4377 100644 --- a/client/model-view/views/rules-view.js +++ b/client/model-view/views/rules-view.js @@ -24,6 +24,7 @@ let Tooltips = require('../../tooltips'); //views let View = require('ampersand-view'); let RuleView = require('./rule-view'); +let InputView = require('../../views/input'); //templates let template = require('../templates/rulesView.pug'); @@ -32,7 +33,8 @@ module.exports = View.extend({ events: { 'click [data-hook=rate-rule]' : 'addRule', 'click [data-hook=assignment-rule]' : 'addRule', - 'click [data-hook=collapse]' : 'changeCollapseButtonText' + 'click [data-hook=collapse]' : 'changeCollapseButtonText', + 'change [data-hook=rule-filter]' : 'filterRules' }, initialize: function (attrs, options) { View.prototype.initialize.apply(this, arguments); @@ -67,6 +69,19 @@ module.exports = View.extend({ changeCollapseButtonText: function (e) { app.changeCollapseButtonText(this, e); }, + filterRules: function (e) { + var key = e.target.value === "" ? null : e.target.value; + var attr = null; + if(key && key.includes(':')) { + let attrKey = key.split(':'); + attr = attrKey[0].toLowerCase().replace(/ /g, ''); + key = attrKey[1]; + } + if(!this.readOnly) { + this.renderEditRules({'key': key, 'attr': attr}); + } + this.renderViewRules({'key': key, 'attr': attr}); + }, openSection: function () { if(!$(this.queryByHook("rules-list-container")).hasClass("show")) { let ruleCollapseBtn = $(this.queryByHook("collapse")); @@ -84,18 +99,20 @@ module.exports = View.extend({ katex.render("dx/dt = f(W)", this.queryByHook("rr-doc-func"), options); katex.render("x = f(V)", this.queryByHook("ar-doc-func"), options); }, - renderEditRules: function () { + renderEditRules: function ({key=null, attr=null}={}) { if(this.rulesView) { this.rulesView.remove(); } + let options = {filter: (model) => { return model.contains(attr, key); }} this.rulesView = this.renderCollection( this.collection, RuleView, - this.queryByHook('edit-rule-list-container') + this.queryByHook('edit-rule-list-container'), + options ); app.tooltipSetup(); }, - renderViewRules: function () { + renderViewRules: function ({key=null, attr=null}={}) { if(this.viewRulesView) { this.viewRulesView.remove(); } @@ -105,7 +122,10 @@ module.exports = View.extend({ }else{ $(this.queryByHook("rules-annotation-header")).css("display", "block"); } - let options = {viewOptions: {viewMode: true}}; + let options = { + viewOptions: {viewMode: true, hasAnnotations: this.containsMdlWithAnn}, + filter: (model) => { return model.contains(attr, key); } + } this.viewRulesView = this.renderCollection( this.collection, RuleView, @@ -122,5 +142,19 @@ module.exports = View.extend({ $(this.queryByHook('add-rule')).prop('disabled', disabled); }, update: function () {}, - updateValid: function () {} + updateValid: function () {}, + subviews: { + filter: { + hook: 'rule-filter', + prepareView: function (el) { + return new InputView({ + parent: this, + required: false, + name: 'filter', + valueType: 'string', + placeholder: 'filter' + }); + } + } + } }); \ No newline at end of file From c34bc402992d03488ed0b49c22a205617122c89e Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 14:29:34 -0400 Subject: [PATCH 79/97] Added a contains function to the event model to support filtering. --- client/models/event.js | 38 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 38 insertions(+) diff --git a/client/models/event.js b/client/models/event.js index d2811fbc16..78a2126b55 100644 --- a/client/models/event.js +++ b/client/models/event.js @@ -48,6 +48,44 @@ module.exports = State.extend({ this.eventAssignments.on('add change remove', this.updateValid, this) this.validateComponent() }, + contains: function (attr, key) { + if(key === null) { return true; } + + let assignmentVars = this.eventAssignments.map((assignment) => { return assignment.variable.name; }); + let assignmentExps = this.eventAssignments.map((assignment) => { return assignment.expression.includes(key); }); + + let checks = { + 'name': this.name.includes(key), + 'delay': this.delay === key, + 'priority': this.priority === key, + 'triggerexpression': this.triggerExpression.includes(key), + 'initialvalue': key === 'Initial Value' && this.initialValue, + 'persistent': key === 'Persistent' && this.persistent, + 'usevaluesfromtriggertime': key === 'Use Values From Trigger Time' && this.useValuesFromTriggerTime, + 'usevaluesfromassignmenttime': key === 'Use Values From Assignment Time' && !this.useValuesFromTriggerTime, + 'eventassignments': assignmentVars.includes(key) || assignmentExps.includes(true) + } + + if(attr !== null) { + checks['assignmentvariable'] = assignmentVars.includes(key); + checks['assignmentexpression'] = assignmentExps.includes(true); + checks['initialvalue'] = this.initialValue === Boolean(key); + checks['persistent'] = this.persistent === Boolean(key); + checks['usevaluesfromtriggertime'] = this.useValuesFromTriggerTime === Boolean(key); + checks['usevaluesfromassignmenttime'] = this.useValuesFromTriggerTime === Boolean(key); + let otherAttrs = { + 'trigger': 'triggerexpression', 'assignmenttarget': 'assignmentvariable' + } + if(Object.keys(otherAttrs).includes(attr)) { + attr = otherAttrs[attr]; + } + return checks[attr]; + } + for(let attribute in checks) { + if(checks[attribute]) { return true; } + } + return false; + }, validateComponent: function () { advanced_error = false; if(!this.name.trim() || this.name.match(/^\d/)) return false; From 0c376467d6cc0efc226540b5451950df94d69386 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 14:31:11 -0400 Subject: [PATCH 80/97] Added filter function to the events section. --- client/model-view/templates/eventsView.pug | 4 +- client/model-view/views/events-view.js | 46 +++++++++++++++++++--- 2 files changed, 43 insertions(+), 7 deletions(-) diff --git a/client/model-view/templates/eventsView.pug b/client/model-view/templates/eventsView.pug index 0828d3d9ee..85fef5ae21 100644 --- a/client/model-view/templates/eventsView.pug +++ b/client/model-view/templates/eventsView.pug @@ -16,7 +16,9 @@ div#events.card a.nav-link.tab(data-hook="events-view-tab" data-toggle="tab" href="#view-events") View - button.btn.btn-outline-collapse(data-toggle="collapse", data-target="#events-container", data-hook="collapse") + + button.btn.btn-outline-collapse.inline(data-toggle="collapse", data-target="#events-container", data-hook="collapse") + + + div.inline(data-hook="event-filter" style="float: right;") div.card-body diff --git a/client/model-view/views/events-view.js b/client/model-view/views/events-view.js index d0a7c38ee1..7b07de89db 100644 --- a/client/model-view/views/events-view.js +++ b/client/model-view/views/events-view.js @@ -22,6 +22,7 @@ let app = require('../../app'); let Tooltips = require("../../tooltips"); //views let View = require('ampersand-view'); +let InputView = require('../../views/input'); let EventDetails = require('./event-details'); let EventListings = require('./event-listing'); let ViewSwitcher = require('ampersand-view-switcher'); @@ -32,7 +33,8 @@ module.exports = View.extend({ template: template, events: { 'click [data-hook=add-event]' : 'addEvent', - 'click [data-hook=collapse]' : 'changeCollapseButtonText' + 'click [data-hook=collapse]' : 'changeCollapseButtonText', + 'change [data-hook=event-filter]' : 'filterEvents' }, initialize: function (attrs, options) { View.prototype.initialize.apply(this, arguments); @@ -93,6 +95,19 @@ module.exports = View.extend({ changeCollapseButtonText: function (e) { app.changeCollapseButtonText(this, e); }, + filterEvents: function (e) { + var key = e.target.value === "" ? null : e.target.value; + var attr = null; + if(key && key.includes(':')) { + let attrKey = key.split(':'); + attr = attrKey[0].toLowerCase().replace(/ /g, ''); + key = attrKey[1]; + } + if(!this.readOnly) { + this.renderEditEventListingsView({'key': key, 'attr': attr}); + } + this.renderViewEventListingView({'key': key, 'attr': attr}); + }, newDetailsView: function (event) { let detailsView = new EventDetails({ model: event }); detailsView.parent = this; @@ -111,18 +126,20 @@ module.exports = View.extend({ this.collection.trigger("select", event); event.detailsView.openAdvancedSection(); }, - renderEditEventListingsView: function () { + renderEditEventListingsView: function ({key=null, attr=null}={}) { if(this.editEventListingsView){ this.editEventListingsView.remove(); } + let options = {filter: (model) => { return model.contains(attr, key); }} this.editEventListingsView = this.renderCollection( this.collection, EventListings, - this.queryByHook('edit-event-listing-container') + this.queryByHook('edit-event-listing-container'), + options ); app.tooltipSetup(); }, - renderViewEventListingView: function () { + renderViewEventListingView: function ({key=null, attr=null}={}) { if(this.viewEventListingsView) { this.viewEventListingsView.remove(); } @@ -132,7 +149,10 @@ module.exports = View.extend({ }else{ $(this.queryByHook("events-annotation-header")).css("display", "block"); } - let options = {viewOptions: {parent: this, viewMode: true}}; + let options = { + viewOptions: {parent: this, viewMode: true}, + filter: (model) => { return model.contains(attr, key); } + }; this.viewEventListingsView = this.renderCollection( this.collection, EventListings, @@ -162,5 +182,19 @@ module.exports = View.extend({ $(this.queryByHook('add-event')).prop('disabled', disabled); }, update: function () {}, - updateValid: function () {} + updateValid: function () {}, + subviews: { + filter: { + hook: 'event-filter', + prepareView: function (el) { + return new InputView({ + parent: this, + required: false, + name: 'filter', + valueType: 'string', + placeholder: 'filter' + }); + } + } + } }); \ No newline at end of file From cf8f3995e92a6d2d478202ad81e12ed442b7fb20 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 14:31:40 -0400 Subject: [PATCH 81/97] Fixed filtering for reactions and species. --- client/model-view/views/reactions-view.js | 2 +- client/model-view/views/species-view.js | 2 +- client/models/reaction.js | 1 + 3 files changed, 3 insertions(+), 2 deletions(-) diff --git a/client/model-view/views/reactions-view.js b/client/model-view/views/reactions-view.js index a6c36c02fb..8efb1b97c7 100644 --- a/client/model-view/views/reactions-view.js +++ b/client/model-view/views/reactions-view.js @@ -89,7 +89,7 @@ module.exports = View.extend({ attr = attrKey[0].toLowerCase().replace(/ /g, ''); key = attrKey[1]; } - if(this.readOnly) { + if(!this.readOnly) { this.renderEditReactionView({'key': key, 'attr': attr}); } this.renderViewReactionView({'key': key, 'attr': attr}); diff --git a/client/model-view/views/species-view.js b/client/model-view/views/species-view.js index a1d432e2e4..b55220fd05 100644 --- a/client/model-view/views/species-view.js +++ b/client/model-view/views/species-view.js @@ -122,7 +122,7 @@ module.exports = View.extend({ attr = attrKey[0].toLowerCase().replace(/ /g, ''); key = attrKey[1]; } - if(this.readOnly) { + if(!this.readOnly) { this.renderEditSpeciesView({'key': key, 'attr': attr}); } this.renderViewSpeciesView({'key': key, 'attr': attr}); diff --git a/client/models/reaction.js b/client/models/reaction.js index be17aa5242..6e52808ba8 100644 --- a/client/models/reaction.js +++ b/client/models/reaction.js @@ -191,6 +191,7 @@ module.exports = State.extend({ if(attr !== null) { checks['reactantsproducts'] = checks.reactants || checks.products; checks['propensities'] = checks.propensity || checks.odepropensity; + checks['massaction'] = this.massaction === Boolean(key); let otherAttrs = { 'stochasticpropensityfunction': 'propensity', 'odepropensityfunction': 'odePropensity', 'rateparameter': 'rate','rateconstant': 'rate', 'stoichspecies': 'reactantsproducts' From 4b808ac9b9934a5fceef7a595f1185f18b2ca6ab Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 14:56:57 -0400 Subject: [PATCH 82/97] Fixed issue with sidenav blocking domain and result preview buttons. --- client/templates/body.pug | 2 +- client/views/main.js | 2 -- 2 files changed, 1 insertion(+), 3 deletions(-) diff --git a/client/templates/body.pug b/client/templates/body.pug index 39ab1b0a22..960afcec55 100644 --- a/client/templates/body.pug +++ b/client/templates/body.pug @@ -32,7 +32,7 @@ body div.container-fluid div.row - div.col-sm-12.col-md-2.col-xxl-1.side-navbar(data-hook="side-navbar") + div.col-sm-12.col-md-2.col-xxl-1(data-hook="side-navbar") nav.sidebar.d-md-block div.sidebar-sticky ul.nav.nav-flex-column diff --git a/client/views/main.js b/client/views/main.js index bd8ae35a9e..0f8fa273e1 100644 --- a/client/views/main.js +++ b/client/views/main.js @@ -142,13 +142,11 @@ module.exports = View.extend({ logs.removeClass("show"); $(this.queryByHook(e.target.dataset.hook)).html("+"); $(".user-logs").removeClass("expand-logs"); - $(".side-navbar").css("z-index", 0); }else{ logs.addClass("show"); $(this.queryByHook(e.target.dataset.hook)).html("-"); if($(".sidebar-sticky").css("position") === "fixed") { $(".user-logs").addClass("expand-logs"); - $(".side-navbar").css("z-index", 1); } } let element = document.querySelector("#user-logs"); From d93a68b5cbb135c1f95c8ce682ab026a0cd357a9 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 15:49:53 -0400 Subject: [PATCH 83/97] Added contains function to the initial conditions model for filter support . --- client/models/initial-condition.js | 36 ++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) diff --git a/client/models/initial-condition.js b/client/models/initial-condition.js index a5057f7083..7d8cfd9659 100644 --- a/client/models/initial-condition.js +++ b/client/models/initial-condition.js @@ -36,4 +36,40 @@ module.exports = State.extend({ initialize: function (attrs, options) { State.prototype.initialize.apply(this, arguments) }, + contains: function (attr, key) { + if(key === null) { return true; } + + let location = `[${this.x}, ${this.y}, ${this.z}]` + let types = [] + if(this.types) { + this.types.forEach((typeID) => { + types.push(this.collection.parent.domain.types.get(typeID, "typeID").name); + }); + } + + let checks = { + 'ictype': this.icType === key, + 'count': this.count === Boolean(key), + 'types': this.icType !=='Place' && types.includes(key), + 'x': this.icType ==='Place' && this.x === Number(key), + 'y': this.icType ==='Place' && this.y === Number(key), + 'z': this.icType ==='Place' && this.z === Number(key), + 'location': this.icType ==='Place' && location === key, + 'specie': this.specie.name === key + } + if(attr !== null) { + let otherAttrs = { + 'type': 'ictype', 'variable': 'specie', 'species': 'specie', + 'activeintypes': 'types', 'restrictto': 'types' + } + if(Object.keys(otherAttrs).includes(attr)) { + attr = otherAttrs[attr]; + } + return checks[attr]; + } + for(let attribute in checks) { + if(checks[attribute]) { return true; } + } + return false; + } }); \ No newline at end of file From 36eab9e78dbeddc92293d260f57494311d915320 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 16:13:31 -0400 Subject: [PATCH 84/97] Added a filter function to the initial conditions section. --- .../templates/initialConditionsView.pug | 4 +- .../views/initial-conditions-view.js | 44 ++++++++++++++++--- 2 files changed, 42 insertions(+), 6 deletions(-) diff --git a/client/model-view/templates/initialConditionsView.pug b/client/model-view/templates/initialConditionsView.pug index bac19f8d8c..b5061f896f 100644 --- a/client/model-view/templates/initialConditionsView.pug +++ b/client/model-view/templates/initialConditionsView.pug @@ -16,7 +16,9 @@ div#initial-conditions.card a.nav-link.tab(data-hook="initial-conditions-view-tab" data-toggle="tab" href="#view-initial-conditions") View - button.btn.btn-outline-collapse(data-toggle="collapse" data-target="#initial-condition" data-hook="initial-condition-button") + + button.btn.btn-outline-collapse.inline(data-toggle="collapse" data-target="#initial-condition" data-hook="initial-condition-button") + + + div.inline(data-hook="initial-condition-filter" style="float: right;") div.card-body p.mb-0 diff --git a/client/model-view/views/initial-conditions-view.js b/client/model-view/views/initial-conditions-view.js index c8743082d3..3a43c7fcff 100644 --- a/client/model-view/views/initial-conditions-view.js +++ b/client/model-view/views/initial-conditions-view.js @@ -22,6 +22,7 @@ let app = require('../../app'); let Tooltips = require('../../tooltips'); //views let View = require('ampersand-view'); +let InputView = require('../../views/input'); let InitialConditionView = require('./initial-condition-view'); //templates let template = require('../templates/initialConditionsView.pug'); @@ -34,6 +35,7 @@ module.exports = View.extend({ 'click [data-hook=distribute-uniformly]' : 'addInitialCondition', 'click [data-hook=initial-condition-button]' : 'changeCollapseButtonText', 'click [data-hook=save-initial-conditions]' : 'switchToViewMode', + 'change [data-hook=initial-condition-filter]' : 'filterInitialConditions' }, initialize: function (attrs, options) { View.prototype.initialize.apply(this, arguments); @@ -71,18 +73,33 @@ module.exports = View.extend({ changeCollapseButtonText: function (e) { app.changeCollapseButtonText(this, e); }, - renderEditInitialConditionsView: function () { + filterInitialConditions: function (e) { + var key = e.target.value === "" ? null : e.target.value; + var attr = null; + if(key && key.includes(':')) { + let attrKey = key.split(':'); + attr = attrKey[0].toLowerCase().replace(/ /g, ''); + key = attrKey[1]; + } + if(!this.readOnly) { + this.renderEditInitialConditionsView({'key': key, 'attr': attr}); + } + this.renderViewInitialConditionsView({'key': key, 'attr': attr}); + }, + renderEditInitialConditionsView: function ({key=null, attr=null}={}) { if(this.editInitialConditionView) { this.editInitialConditionView.remove(); } + let options = {filter: (model) => { return model.contains(attr, key); }} this.editInitialConditionView = this.renderCollection( this.collection, InitialConditionView, - this.queryByHook('edit-initial-conditions-collection') + this.queryByHook('edit-initial-conditions-collection'), + options ); app.tooltipSetup(); }, - renderViewInitialConditionsView: function () { + renderViewInitialConditionsView: function ({key=null, attr=null}={}) { if(this.viewInitialConditionView) { this.viewInitialConditionView.remove(); } @@ -92,7 +109,10 @@ module.exports = View.extend({ }else{ $(this.queryByHook("initial-conditions-annotation-header")).css("display", "block"); } - let options = {viewOptions: {viewMode: true}}; + let options = { + viewOptions: {viewMode: true, hasAnnotations: this.containsMdlWithAnn}, + filter: (model) => { return model.contains(attr, key); } + } this.viewInitialConditionView = this.renderCollection( this.collection, InitialConditionView, @@ -102,5 +122,19 @@ module.exports = View.extend({ app.tooltipSetup(); }, update: function () {}, - updateValid: function () {} + updateValid: function () {}, + subviews: { + filter: { + hook: 'initial-condition-filter', + prepareView: function (el) { + return new InputView({ + parent: this, + required: false, + name: 'filter', + valueType: 'string', + placeholder: 'filter' + }); + } + } + } }); \ No newline at end of file From 6396d9d10e5baf1c023eb105ae25c0ee3aaa1d19 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 16:15:52 -0400 Subject: [PATCH 85/97] Added additional attr options for species and reaction filtering. --- client/models/reaction.js | 3 ++- client/models/specie.js | 2 +- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/client/models/reaction.js b/client/models/reaction.js index 6e52808ba8..18c123c506 100644 --- a/client/models/reaction.js +++ b/client/models/reaction.js @@ -194,7 +194,8 @@ module.exports = State.extend({ checks['massaction'] = this.massaction === Boolean(key); let otherAttrs = { 'stochasticpropensityfunction': 'propensity', 'odepropensityfunction': 'odePropensity', - 'rateparameter': 'rate','rateconstant': 'rate', 'stoichspecies': 'reactantsproducts' + 'rateparameter': 'rate','rateconstant': 'rate', 'stoichspecies': 'reactantsproducts', + 'restrictto': 'types' } if(Object.keys(otherAttrs).includes(attr)) { attr = otherAttrs[attr]; diff --git a/client/models/specie.js b/client/models/specie.js index b20ac5416a..698a32ebe6 100644 --- a/client/models/specie.js +++ b/client/models/specie.js @@ -65,7 +65,7 @@ module.exports = State.extend({ if(attr !== null) { let otherAttrs = { 'initialcondition': 'value', 'initialvalue': 'value', - 'switchingtolerance': 'switchTol', + 'switchingtolerance': 'switchTol', 'restrictto': 'types', 'minimumvalueforswitching': 'switchMin' } if(Object.keys(otherAttrs).includes(attr)) { From 76e57ffd56cbc08f5eba958ef24d94b26ac30a85 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 16:42:18 -0400 Subject: [PATCH 86/97] Added a contains function to the boundary condition model to support filtering. --- client/models/boundary-condition.js | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/client/models/boundary-condition.js b/client/models/boundary-condition.js index 6ba133c7b0..0fc3db918b 100644 --- a/client/models/boundary-condition.js +++ b/client/models/boundary-condition.js @@ -25,5 +25,25 @@ module.exports = State.extend({ name: 'string', expression: 'string', annotation: 'string' + }, + contains: function (attr, key) { + if(key === null) { return true; } + + let checks = { + 'name': this.name.includes(key), + 'expression': this.expression.includes(key) + } + + if(attr !== null) { + let otherAttrs = {} + if(Object.keys(otherAttrs).includes(attr)) { + attr = otherAttrs[attr]; + } + return checks[attr]; + } + for(let attribute in checks) { + if(checks[attribute]) { return true; } + } + return false; } }); \ No newline at end of file From 55bd53a3002e3e35c661747518b6c472fabe12e4 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Thu, 22 Sep 2022 16:46:03 -0400 Subject: [PATCH 87/97] Added filter function to the boundary condition section. --- .../templates/boundaryConditionsView.pug | 4 +- .../views/boundary-conditions-view.js | 41 ++++++++++++++++--- 2 files changed, 39 insertions(+), 6 deletions(-) diff --git a/client/model-view/templates/boundaryConditionsView.pug b/client/model-view/templates/boundaryConditionsView.pug index fea9fc7d4b..bc2792c802 100644 --- a/client/model-view/templates/boundaryConditionsView.pug +++ b/client/model-view/templates/boundaryConditionsView.pug @@ -16,7 +16,9 @@ div#boundary-conditions.card a.nav-link.tab(data-hook="bc-view-tab" data-toggle="tab" href="#view-boundary-conditions") View - button.btn.btn-outline-collapse(data-toggle="collapse", data-target="#collapse-boundary-conditions", data-hook="collapse-bc") + + button.btn.btn-outline-collapse.inline(data-toggle="collapse", data-target="#collapse-boundary-conditions", data-hook="collapse-bc") + + + div.inline(data-hook="boundary-condition-filter" style="float: right;") div.card-body diff --git a/client/model-view/views/boundary-conditions-view.js b/client/model-view/views/boundary-conditions-view.js index f67def35ec..e2f4831a94 100644 --- a/client/model-view/views/boundary-conditions-view.js +++ b/client/model-view/views/boundary-conditions-view.js @@ -23,8 +23,8 @@ let app = require('../../app'); let tests = require('../../views/tests'); let Tooltips = require('../../tooltips'); //views -let InputView = require('../../views/input'); let View = require('ampersand-view'); +let InputView = require('../../views/input'); let SelectView = require('ampersand-select-view'); let BoundaryConditionView = require('./boundary-condition-view'); //templates @@ -47,6 +47,7 @@ module.exports = View.extend({ 'change [data-hook=new-bc-y-max]' : 'handleSetValue', 'change [data-hook=new-bc-z-min]' : 'handleSetValue', 'change [data-hook=new-bc-z-max]' : 'handleSetValue', + 'change [data-hook=boundary-condition-filter]' : 'filterBoundaryConditions', 'click [data-hook=collapse-bc]' : 'changeCollapseButtonText', 'click [data-hook=collapse-new-bc' : 'changeCollapseButtonText', 'click [data-hook=add-new-bc]' : 'handleAddBCClick' @@ -77,6 +78,19 @@ module.exports = View.extend({ changeCollapseButtonText: function (e) { app.changeCollapseButtonText(this, e); }, + filterBoundaryConditions: function (e) { + var key = e.target.value === "" ? null : e.target.value; + var attr = null; + if(key && key.includes(':')) { + let attrKey = key.split(':'); + attr = attrKey[0].toLowerCase().replace(/ /g, ''); + key = attrKey[1]; + } + if(!this.readOnly) { + this.renderEditBoundaryConditionView({'key': key, 'attr': attr}); + } + this.renderViewBoundaryConditionView({'key': key, 'attr': attr}); + }, handleAddBCClick: function (e) { let endpoint = path.join(app.getApiPath(), "model/new-bc"); let self = this; @@ -141,18 +155,20 @@ module.exports = View.extend({ } this.toggleAddNewBCButton(); }, - renderEditBoundaryConditionView: function () { + renderEditBoundaryConditionView: function ({key=null, attr=null}={}) { if(this.editBoundaryConditionView) { this.editBoundaryConditionView.remove(); } + let options = {filter: (model) => { return model.contains(attr, key); }} this.editBoundaryConditionView = this.renderCollection( this.collection, BoundaryConditionView, - this.queryByHook("edit-boundary-conditions-list") + this.queryByHook("edit-boundary-conditions-list"), + options ); app.tooltipSetup(); }, - renderViewBoundaryConditionView: function () { + renderViewBoundaryConditionView: function ({key=null, attr=null}={}) { if(this.viewBoundaryConditionView) { this.viewBoundaryConditionView.remove(); } @@ -162,7 +178,10 @@ module.exports = View.extend({ }else{ $(this.queryByHook("bc-annotation-header")).css("display", "block"); } - let options = {viewOptions: {viewMode: true}}; + let options = { + viewOptions: {viewMode: true, hasAnnotations: this.containsMdlWithAnn}, + filter: (model) => { return model.contains(attr, key); } + } this.viewBoundaryConditionView = this.renderCollection( this.collection, BoundaryConditionView, @@ -213,6 +232,18 @@ module.exports = View.extend({ return value; }, subviews: { + filter: { + hook: 'boundary-condition-filter', + prepareView: function (el) { + return new InputView({ + parent: this, + required: false, + name: 'filter', + valueType: 'string', + placeholder: 'filter' + }); + } + }, newBCName: { hook: "new-bc-name", prepareView: function (el) { From a02ccbc4b58038abb80b1c72ab90b046b17859b6 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 23 Sep 2022 15:06:14 -0400 Subject: [PATCH 88/97] Created the page view and template files for the example library page. --- client/pages/example-library.js | 49 +++++++++++++++++++++++ client/templates/pages/exampleLibrary.pug | 27 +++++++++++++ 2 files changed, 76 insertions(+) create mode 100644 client/pages/example-library.js create mode 100644 client/templates/pages/exampleLibrary.pug diff --git a/client/pages/example-library.js b/client/pages/example-library.js new file mode 100644 index 0000000000..b7d722db56 --- /dev/null +++ b/client/pages/example-library.js @@ -0,0 +1,49 @@ +/* +StochSS is a platform for simulating biochemical systems +Copyright (C) 2019-2022 StochSS developers. + +This program is free software: you can redistribute it and/or modify +it under the terms of the GNU General Public License as published by +the Free Software Foundation, either version 3 of the License, or +(at your option) any later version. + +This program is distributed in the hope that it will be useful, +but WITHOUT ANY WARRANTY; without even the implied warranty of +MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +GNU General Public License for more details. + +You should have received a copy of the GNU General Public License +along with this program. If not, see . +*/ +let $ = require('jquery'); +let path = require('path'); +//support files +var app = require('../app'); +//views +let PageView = require('./base'); +//templates +let template = require('../templates/pages/exampleLibrary.pug'); + +import initPage from './page.js'; + +let exampleLibrary = PageView.extend({ + template: template, + initialize: function (attrs, options) { + PageView.prototype.initialize.apply(this, arguments); + }, + render: function (attrs, options) { + PageView.prototype.render.apply(this, arguments); + this.getExampleLibrary(); + }, + getExampleLibrary: function () { + let endpoint = path.join(app.getApiPath(), "example-library"); + app.getXHR(endpoint, { + success: (err, response, body) => { + $(this.queryByHook('well-mixed-examples')).html(body.wellMixed); + $(this.queryByHook('spatial-examples')).html(body.spatial); + } + }); + } +}); + +initPage(exampleLibrary); diff --git a/client/templates/pages/exampleLibrary.pug b/client/templates/pages/exampleLibrary.pug new file mode 100644 index 0000000000..f86ccf2180 --- /dev/null +++ b/client/templates/pages/exampleLibrary.pug @@ -0,0 +1,27 @@ +section.page + + h2 Example Library + + div.card.mt-3#well-mixed-examples + + div.card-header.pb-0 + + h3.inline Well-Mixed + + button.btn.btn-outline-collapse(data-toggle="collapse" data-target="#collapse-well-mixed" data-hook="collapse-well-mixed") - + + div.collapse.show(id="collapse-well-mixed") + + div.card-body(data-hook="well-mixed-examples") + + div.card.mt-4#spatial-examples + + div.card-header.pb-0 + + h3.inline Spatial + + button.btn.btn-outline-collapse(data-toggle="collapse" data-target="#collapse-spatial" data-hook="collapse-spatial") - + + div.collapse.show(id="collapse-spatial") + + div.card-body(data-hook="spatial-examples") From d9a19bde815858a86b3e6678c04471736a7ec803 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 23 Sep 2022 15:09:04 -0400 Subject: [PATCH 89/97] Added rendering routes and handlers for the example library page. --- stochss/handlers/__init__.py | 1 + stochss/handlers/pages.py | 25 +++++++++++++++++++++---- webpack.config.js | 8 ++++++++ 3 files changed, 30 insertions(+), 4 deletions(-) diff --git a/stochss/handlers/__init__.py b/stochss/handlers/__init__.py index 244ad6ed84..6907767ae5 100644 --- a/stochss/handlers/__init__.py +++ b/stochss/handlers/__init__.py @@ -49,6 +49,7 @@ def get_page_handlers(route_start): (r'/stochss/project/manager\/?', ProjectManagerHandler), (r'/stochss/loading-page\/?', LoadingPageHandler), (r'/stochss/multiple-plots\/?', MultiplePlotsHandler), + (r'/stochss/example-library\/?', ExampleLibraryHandler), # ## API Handlers # diff --git a/stochss/handlers/pages.py b/stochss/handlers/pages.py index 335e64a678..58cf4d8100 100644 --- a/stochss/handlers/pages.py +++ b/stochss/handlers/pages.py @@ -112,6 +112,23 @@ async def get(self): self.render("stochss-quickstart.html", server_path=self.get_server_path()) +class ExampleLibraryHandler(PageHandler): + ''' + ################################################################################################ + StochSS Example Library Page Handler + ################################################################################################ + ''' + @web.authenticated + async def get(self): + ''' + Render the StochSS example library page. + + Attributes + ---------- + ''' + self.render("stochss-example-library.html", server_path=self.get_server_path()) + + class ModelBrowserHandler(PageHandler): ''' ################################################################################################ @@ -267,15 +284,15 @@ async def get(self): path = os.path.join(os.path.expanduser("~"), ".user-logs.txt") try: if os.path.exists(f"{path}.bak"): - with open(path, "r") as log_file: + with open(path, "r", encoding="utf-8") as log_file: logs = log_file.read().strip().split("\n") else: logs = [] - with open(path, "r") as log_file: + with open(path, "r", encoding="utf-8") as log_file: logs.extend(log_file.read().strip().split("\n")) logs = logs[int(log_num):] except FileNotFoundError: - open(path, "w").close() + open(path, "w", encoding="utf-8").close() logs = [] self.write({"logs":logs}) self.finish() @@ -298,5 +315,5 @@ async def get(self): path = os.path.join(os.path.expanduser("~"), ".user-logs.txt") if os.path.exists(f'{path}.bak'): os.remove(f'{path}.bak') - open(path, "w").close() + open(path, "w", encoding="utf-8").close() self.finish() diff --git a/webpack.config.js b/webpack.config.js index 379a96947b..22f1f93036 100644 --- a/webpack.config.js +++ b/webpack.config.js @@ -6,6 +6,7 @@ module.exports = { entry: { home: './client/pages/users-home.js', quickstart: './client/pages/quickstart.js', + exampleLibrary: './client/pages/example-library.js', browser: './client/pages/browser.js', editor: './client/pages/model-editor.js', domainEditor: './client/pages/domain-editor.js', @@ -35,6 +36,13 @@ module.exports = { name: 'quickstart', inject: false }), + new HtmlWebpackPlugin({ + title: 'StochSS | Example Library', + filename: 'stochss-example-library.html', + template: 'page_template.pug', + name: 'exampleLibrary', + inject: false + }), new HtmlWebpackPlugin({ title: 'StochSS | Model Browser', filename: 'stochss-file-browser.html', From 4a350bf61e6c560d66fb73f094526ac16df500f9 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 23 Sep 2022 15:12:02 -0400 Subject: [PATCH 90/97] Refactored the backend functions for loading the example library to support the new page. --- stochss/handlers/util/stochss_base.py | 47 ++++++++++----------------- 1 file changed, 18 insertions(+), 29 deletions(-) diff --git a/stochss/handlers/util/stochss_base.py b/stochss/handlers/util/stochss_base.py index 631c542989..9d9464c6be 100644 --- a/stochss/handlers/util/stochss_base.py +++ b/stochss/handlers/util/stochss_base.py @@ -20,9 +20,7 @@ import json import time import shutil -import hashlib import datetime -import tempfile import traceback import requests @@ -51,26 +49,30 @@ def __init__(self, path): self.path = path self.logs = [] - def __build_example_dropdown(self, exm_data): - header = "
  • __KEY__
    • " - divider = "
  • " - entry_li = "
  • __ENTRY_A__
    • " - entry_a = "    __NAME__" + def __build_example_html(self, exm_data): + row = "
    __CONTENTS__
    " + entry = "__ALERT__' href='__OPEN_LINK__' role='button' style='width: 100%'>__NAME__" + entry_a = f"{exm_a}") + well_mixed = row.replace("__CONTENTS__", ''.join(wm_list)) + # Spatial Examples - example_list.extend([header.replace("__KEY__", "Spatial"), divider]) + s_list = [] for entry in exm_data['Spatial']: exm_a = entry_a.replace("__ALERT__", entry['alert']) exm_a = exm_a.replace("__OPEN_LINK__", entry['open_link']) exm_a = exm_a.replace("__NAME__", entry['name']) - example_list.append(entry_li.replace("__ENTRY_A__", exm_a)) - return "".join(example_list) + s_list.append(f"
    {exm_a}
    ") + spatial = row.replace("__CONTENTS__", ''.join(s_list)) + + return {"wellMixed": well_mixed, "spatial": spatial} def __get_entry(self, entries, name): for entry in entries: @@ -98,13 +100,13 @@ def __get_from_remote(self): def __update_exm_data(self, exm_data, old_exm_data=None): for entry in exm_data['Well-Mixed']: - entry['alert'] = " text-success" + entry['alert'] = " success" if old_exm_data is not None: old_entry = self.__get_entry(old_exm_data['Well-Mixed'], entry['name']) entry['mod_time'] = old_entry['mod_time'] entry['umd5_sum'] = old_entry['umd5_sum'] for entry in exm_data['Spatial']: - entry['alert'] = " text-success" + entry['alert'] = " success" if old_exm_data is not None: old_entry = self.__get_entry(old_exm_data['Spatial'], entry['name']) entry['mod_time'] = old_entry['mod_time'] @@ -126,7 +128,6 @@ def __update_umd5_sums(self, exm_data, files=None): self.__update_umd5_sums(exm_data, files=non_projs) self.__update_umd5_sums(exm_data, files=projs) else: - tmp_dir = tempfile.TemporaryDirectory() for example in files: if example in exm_data['Names']: entry = self.__get_entry( @@ -136,19 +137,7 @@ def __update_umd5_sums(self, exm_data, files=None): entry = self.__get_entry( exm_data['Spatial'], exm_data['Name-Mappings'][example] ) - # Update MD5 Sum for users example files - # if os.path.getmtime(os.path.join(e_path, example)) != entry['mod_time']: - # entry['mod_time'] = os.path.getmtime(os.path.join(e_path, example)) - # zip_path = os.path.join(tmp_dir.name, exm_data['Name-Mappings'][example]) - # shutil.make_archive(zip_path, "zip", e_path, example) - # with open(f"{zip_path}.zip", "rb") as zip_file: - # entry['umd5_sum'] = hashlib.md5(zip_file.read()).hexdigest() - # if entry['umd5_sum'] == entry['error']: - # entry['alert'] = " text-danger" - # elif entry['umd5_sum'] != entry['md5_sum']: - # entry['alert'] = " text-warning" - # else: - entry['alert'] = "" + entry['alert'] = "primary" def add_presentation_name(self, file, name): ''' @@ -472,7 +461,7 @@ def load_example_library(self): with open(self.path, "w", encoding="utf-8") as data_file: json.dump(exm_data, data_file, sort_keys=True, indent=4) - return self.__build_example_dropdown(exm_data) + return self.__build_example_html(exm_data) def log(self, level, message): ''' From 9543ca396ab821dd5da1a416dd5c4c9cf76aea0d Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 23 Sep 2022 15:18:14 -0400 Subject: [PATCH 91/97] Refactored the example library left navbar entry to a nav link. --- client/templates/body.pug | 10 +--------- 1 file changed, 1 insertion(+), 9 deletions(-) diff --git a/client/templates/body.pug b/client/templates/body.pug index 39ab1b0a22..4d4844508b 100644 --- a/client/templates/body.pug +++ b/client/templates/body.pug @@ -51,15 +51,7 @@ body a.nav-link(href="stochss/files#file-browser-section" title="Explore your StochSS files") Files li.nav_item - div.dropdown - button.dropdown-toggle.nav-item.nav-link.dropbtn.nav-drop#exampleLibrary( - data-hook="example-library", - data-toggle="dropdown", - aria-haspopup="true", - aria-expanded="false", - type="button" - ) Example Library - ul.nav.dropdown-menu.dropdown-content.nav-drop-content(id="exampleLibraryDropdown" aria-labelledby="exampleLibrary") + div: a.nav-link(href="stochss/example-library" title="Import Examples from Library") Example Library li.nav-item div: a.nav-link(target="_blank" href="tree" title="Browse your files in a Jupyter interface") Jupyter Notebooks From b5f836b8ecbb5abd1bffab26e7158dc27cdaa2b0 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 23 Sep 2022 15:23:24 -0400 Subject: [PATCH 92/97] Added the example library html to the git ignore file. --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index b4576d7b5b..07081b1b5b 100644 --- a/.gitignore +++ b/.gitignore @@ -13,6 +13,7 @@ stochss/dist/stochss-domain-editor.html stochss/dist/stochss-loading-page.html stochss/dist/stochss-quick-start.html stochss/dist/stochss-user-home.html +stochss/dist/stochss-example-library.html jupyterhub/templates/page.html jupyterhub/templates/stochss-home.html jupyterhub/templates/stochss-job-presentation.html From 0246a3be9d04ebee2e66d111d9212a46497c191c Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Fri, 23 Sep 2022 15:34:34 -0400 Subject: [PATCH 93/97] Added change collapse button text functionality. --- client/pages/example-library.js | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/client/pages/example-library.js b/client/pages/example-library.js index b7d722db56..6f0b74b4ff 100644 --- a/client/pages/example-library.js +++ b/client/pages/example-library.js @@ -28,6 +28,10 @@ import initPage from './page.js'; let exampleLibrary = PageView.extend({ template: template, + events: { + 'click [data-hook=collapse-well-mixed]' : 'changeCollapseButtonText', + 'click [data-hook=collapse-spatial]' : 'changeCollapseButtonText' + }, initialize: function (attrs, options) { PageView.prototype.initialize.apply(this, arguments); }, @@ -35,6 +39,9 @@ let exampleLibrary = PageView.extend({ PageView.prototype.render.apply(this, arguments); this.getExampleLibrary(); }, + changeCollapseButtonText: function (e) { + app.changeCollapseButtonText(this, e) + }, getExampleLibrary: function () { let endpoint = path.join(app.getApiPath(), "example-library"); app.getXHR(endpoint, { From cc91c89843363e1d4ea7a01bb3cae11eb98bb9f8 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Mon, 26 Sep 2022 16:28:19 -0400 Subject: [PATCH 94/97] Refactored links for example library entries. --- stochss/handlers/file_browser.py | 3 ++- stochss/handlers/util/stochss_base.py | 12 ++++++------ 2 files changed, 8 insertions(+), 7 deletions(-) diff --git a/stochss/handlers/file_browser.py b/stochss/handlers/file_browser.py index ae57d440fd..e14996e495 100644 --- a/stochss/handlers/file_browser.py +++ b/stochss/handlers/file_browser.py @@ -817,9 +817,10 @@ async def get(self): Attributes ---------- ''' + home = "/hub/spawn" if str(self.request.path).startswith("/user") else "stochss/home" try: system = StochSSBase(path=".example-library.json") - examples = system.load_example_library() + examples = system.load_example_library(home) self.write(examples) except StochSSAPIError as err: report_error(self, log, err) diff --git a/stochss/handlers/util/stochss_base.py b/stochss/handlers/util/stochss_base.py index 9d9464c6be..28a6da60ee 100644 --- a/stochss/handlers/util/stochss_base.py +++ b/stochss/handlers/util/stochss_base.py @@ -49,7 +49,7 @@ def __init__(self, path): self.path = path self.logs = [] - def __build_example_html(self, exm_data): + def __build_example_html(self, exm_data, home): row = "
    __CONTENTS__
    " entry = "__ALERT__' href='__OPEN_LINK__' role='button' style='width: 100%'>__NAME__    " entry_a = f"{exm_a}") well_mixed = row.replace("__CONTENTS__", ''.join(wm_list)) @@ -100,13 +100,13 @@ def __get_from_remote(self): def __update_exm_data(self, exm_data, old_exm_data=None): for entry in exm_data['Well-Mixed']: - entry['alert'] = " success" + entry['alert'] = "success" if old_exm_data is not None: old_entry = self.__get_entry(old_exm_data['Well-Mixed'], entry['name']) entry['mod_time'] = old_entry['mod_time'] entry['umd5_sum'] = old_entry['umd5_sum'] for entry in exm_data['Spatial']: - entry['alert'] = " success" + entry['alert'] = "success" if old_exm_data is not None: old_entry = self.__get_entry(old_exm_data['Spatial'], entry['name']) entry['mod_time'] = old_entry['mod_time'] @@ -440,7 +440,7 @@ def get_unique_copy_path(self, path=None): return os.path.join(dirname, cp_file) - def load_example_library(self): + def load_example_library(self, home): ''' Load the example library dropdown list. ''' @@ -461,7 +461,7 @@ def load_example_library(self): with open(self.path, "w", encoding="utf-8") as data_file: json.dump(exm_data, data_file, sort_keys=True, indent=4) - return self.__build_example_html(exm_data) + return self.__build_example_html(exm_data, home) def log(self, level, message): ''' From 04a7ae52f9d972548aba5410c21e8508629a3c21 Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Mon, 26 Sep 2022 16:34:53 -0400 Subject: [PATCH 95/97] Refactored links for example library entries take 2. --- stochss/handlers/util/stochss_base.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/stochss/handlers/util/stochss_base.py b/stochss/handlers/util/stochss_base.py index 28a6da60ee..6b09a3adee 100644 --- a/stochss/handlers/util/stochss_base.py +++ b/stochss/handlers/util/stochss_base.py @@ -67,7 +67,7 @@ def __build_example_html(self, exm_data, home): s_list = [] for entry in exm_data['Spatial']: exm_a = entry_a.replace("__ALERT__", entry['alert']) - exm_a = exm_a.replace("__OPEN_LINK__", entry['open_link']) + exm_a = exm_a.replace("__OPEN_LINK__", f"{home}?open={entry['open_link']}") exm_a = exm_a.replace("__NAME__", entry['name']) s_list.append(f"
    {exm_a}
    ") spatial = row.replace("__CONTENTS__", ''.join(s_list)) From fe1f444278d3d55d58f20d1ec5767b697bed848c Mon Sep 17 00:00:00 2001 From: Bryan Rumsey Date: Mon, 26 Sep 2022 17:05:17 -0400 Subject: [PATCH 96/97] Added and example of message dissemination to readme. --- README.md | 26 +++++++++++++++++++++++++- 1 file changed, 25 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index a63148dfbe..e411f66054 100644 --- a/README.md +++ b/README.md @@ -61,7 +61,31 @@ StochSS uses [JupyterHub](https://jupyterhub.readthedocs.io/en/stable/#) as the - [Optional] By default multi-user StochSS is set up to allocate 2 logical cpus per user, reserving 2 logical cpus for the hub container and underlying OS. You can define "power users" that are excluded from resource limitations using the same method as above for adding an admin, but instead of following the username with 'admin', use the keyword 'power' instead. -- [Optional] To disseminate messages to all users, make a JSON decodable file called `messages` in the `userlist/` directory. The contents of the `messages` file should be formatted as a list of dictionaries defining each message. Accepted keys are `message`, string containing the message to be display with tags for dates and time i.e. `StochSS Live! will be down for scheduled maintenance on __DATE__ from __START__ to __END__` an additional `__DATE__` tag can be added if the start and end dates differ, `start`, string representing the starting date and time i.e. `Sep 26, 2022 14:00 EST`, `end`, string representing the ending date and time i.e. `Sep 26, 2022 18:00 EST`, and `style`, a string containing a background color keyword i.e. `warning` or css i.e. `background-color: rgba(160, 32, 240, 0.5) !important;`. +- [Optional] To disseminate messages to all users, make a JSON decodable file called `messages.json` in the `userlist/` directory. The contents of the `messages` file should be formatted as a list of dictionaries defining each message. Accepted keys are `message`, string containing the message to be display with tags for dates and time i.e. `StochSS Live! will be down for scheduled maintenance on __DATE__ from __START__ to __END__` an additional `__DATE__` tag can be added if the start and end dates differ, `start`, string representing the starting date and time i.e. `Sep 26, 2022 14:00 EST`, `end`, string representing the ending date and time i.e. `Sep 26, 2022 18:00 EST`, and `style`, a string containing a background color keyword i.e. `warning` or css i.e. `background-color: rgba(160, 32, 240, 0.5) !important;`. + +```python +[ + { + "message": "StochSS Live! will be down for scheduled maintenance on __DATE__ from __START__ to __END__", + "start": "Sep 26, 2022 14:00 EST", + "end": "Sep 26, 2022 18:00 EST", + "style": "info" + }, + { + "message": "StochSS Live! will be down for scheduled maintenance from" + }, + { + "message": "__DATE__ __START__ to __DATE__ __END__", + "start": "Sep 26, 2022 14:00 EST", + "end": "Sep 27, 2022 14:00 EST", + "style": "warning" + }, + { + "message": "StochSS Live! is down for scheduled maintenanc", + "style": "background-color: rgba(160, 32, 240, 0.5) !important;" + } +] +``` ### Run Locally From f95741e607a45e0f91a1f789a3e5cd99f26032fa Mon Sep 17 00:00:00 2001 From: BryanRumsey <44621966+BryanRumsey@users.noreply.github.com> Date: Mon, 26 Sep 2022 17:18:45 -0400 Subject: [PATCH 97/97] Fixed typos in readme --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index e411f66054..ceec68c164 100644 --- a/README.md +++ b/README.md @@ -57,7 +57,7 @@ StochSS uses [JupyterHub](https://jupyterhub.readthedocs.io/en/stable/#) as the - In addition to the single-user requirements, you will need [Docker Compose](https://docs.docker.com/compose/install/). -- [Optional] To set admins for JupyterHub, make a file called `userlist` in the `userlist/` directory. On each line of this file place a username followed by the word 'admin'. For example: `myuser admin`. If using Google OAuth, the uesername will be a Gmail address. Navigate to `/hub/admin` to use the JupyterHub admin interface. +- [Optional] To set admins for JupyterHub, make a file called `userlist` in the `userlist/` directory. On each line of this file place a username followed by the word 'admin'. For example: `myuser admin`. If using Google OAuth, the username will be a Gmail address. Navigate to `/hub/admin` to use the JupyterHub admin interface. - [Optional] By default multi-user StochSS is set up to allocate 2 logical cpus per user, reserving 2 logical cpus for the hub container and underlying OS. You can define "power users" that are excluded from resource limitations using the same method as above for adding an admin, but instead of following the username with 'admin', use the keyword 'power' instead. @@ -81,7 +81,7 @@ StochSS uses [JupyterHub](https://jupyterhub.readthedocs.io/en/stable/#) as the "style": "warning" }, { - "message": "StochSS Live! is down for scheduled maintenanc", + "message": "StochSS Live! is down for scheduled maintenance", "style": "background-color: rgba(160, 32, 240, 0.5) !important;" } ]