From e1d83cf0a625cca1b712122e77c3463bb6ad56c6 Mon Sep 17 00:00:00 2001 From: NinelK Date: Wed, 29 May 2024 08:53:18 +0000 Subject: [PATCH] adding new project --- .../README.md | 37 +++++++++++++++++++ .../src/README.md | 1 + 2 files changed, 38 insertions(+) create mode 100644 projects/support_for_sinaps_probes_and_data_formats/README.md create mode 100644 projects/support_for_sinaps_probes_and_data_formats/src/README.md diff --git a/projects/support_for_sinaps_probes_and_data_formats/README.md b/projects/support_for_sinaps_probes_and_data_formats/README.md new file mode 100644 index 0000000..8fa00dd --- /dev/null +++ b/projects/support_for_sinaps_probes_and_data_formats/README.md @@ -0,0 +1,37 @@ +# Project title: support for SiNAPS probes and data formats + +### Key Investigators + +* Nina Kudryashova +* Matteo Vincenzi +* Viviane (is she staying for the hackathon?) +* Alessio ? + +## Project Description + +Add support for SiNAPS probes (via probeinterface), data formats (partially done with *.bin and *.h5 extractors for SiNAPS). +Potentially: check drift and drift correction for these probes. + +### Background + +SiNAPS probes are high-channel count, active electrodes, similar to other silicon active probes available and popular today (E.g., NeuroPixels)[^1]. They are currently not supported by Spikeinterface, but we started developing data extractors for the probe. + +### Objectives + +- [ ] Add support for SiNAPS data formats +- [ ] Add support for SiNAPS research probes +- [ ] Add tools for addressing SiNAPS-specific issues (e.g. amplification artefacts) +- [ ] Bad channel detection +- [ ] Drift correction + +### Approach and Plan + +- [ ] Test the extractors +- [ ] Test probeinterface probes and add to spikeinterface +- [ ] Discuss SiNAPS-specific amplification artefacts and approaches to masking them out for SI +- [ ] Analyse drift and drift correction on these large probes? + +## References + +[^1]: https://plexon.com/products/sinaps/ + diff --git a/projects/support_for_sinaps_probes_and_data_formats/src/README.md b/projects/support_for_sinaps_probes_and_data_formats/src/README.md new file mode 100644 index 0000000..80ea5e8 --- /dev/null +++ b/projects/support_for_sinaps_probes_and_data_formats/src/README.md @@ -0,0 +1 @@ +Add your code here