TODO and bugs

[lgatto]

Improvement

• Remove the exprs data from the table
• Add axes on the PCA plot
• Either remove the t-SNE tab or add the plot
• Make line profile axes label smaller
• Line profiles scaling
• Make protein labels/names bigger on plot (currently unreadable)
• Selected proteins to be highlighted in the profile plot
• Add pubmed entry and link
• UniProt loading
• Search whole fData
• PCA %age variance
• More PCs - see https://gist.github.com/lgatto/94983a45c63f76d762803c460a98e334
• Search all feature variables
• Partial matching when searching
• Save figures (save button with popup to save data, PCA or profile plot)
• Indicate number of selected features
• Adapt to legend number of organelles: if more than two rows, show a more button to open a side panel
• Colour should use a gradient for numeric data and discrete for characters. If the number of character is > than the number of available colours, than use d3.js default discrete colour palette (or all black with a message)
• Allow to use a different column as markers

Bugs

• Line profiles don't show up in the hyperLOPIT data
• Loop issue upon selection of profiles
• PCA rendering when enlarging visualisation area
• Classes appearance upon deselect/select

New features

• Multi-search via search1;search2
• General search for proteins, organelles, ...
• Sorting datasets
• Linking to more resources and flexibility in defining what identifier (feature variable) to use to construct the search query
• Share dataset (via unique link)

[Kohze]

Good points, will add them later today.

Regarding expression data removal it would highly reduce the functionality of the radius/transparency modifier. (below an example if i take one of the exprs columns as radius)

http://prntscr.com/gjzgbv

I will try a hybrid with extra button to activate or deactivate the exprs. data in the table

[Kohze]

http://prntscr.com/gqar8e

The profile plot is now scaled to the absolute 0-1 scale. Regarding "Make line profile axes label smaller" I was thinking if we actually needed the axis labeling on each line. Otherwise i would suggest to leave only scaling numbers on the most left one (all the others just as lines + channel name).