mutation_detailed.proto

syntax = "proto3";                                                                                                                                                                                              
package Mutation_Detailed;

message node {
    repeated int32 mutation_positions = 1;
    repeated fixed32 mutation_other_fields = 2;
    repeated int32 ignored_range_start = 3;
    repeated int32 ignored_range_end = 4;
    uint64 node_id = 5;
    repeated int64 children_offsets =6;
    repeated int32 children_lengths =7;
    repeated string condensed_nodes =8;
    int32 changed =9;
}

message node_idx{
    int64 node_id = 1;
    string node_name=2;
}

message meta {
    repeated int32 ref_nuc=1;
    int64 nodes_idx_next=2;
    repeated string chromosomes=3;
    int64 root_offset=4;
    int64 root_length=5;
    repeated node_idx node_idx_map=6;
}

message sample_to_place{
    uint64 sample_id=1;
    repeated int32 sample_mutation_positions=2;
    repeated fixed32 sample_mutation_other_fields=3;
}
message placed_target{
    uint64 target_node_id=1;
    uint64 split_node_id=2;
    repeated int32 sample_mutation_positions=3;
    repeated fixed32 sample_mutation_other_fields=4;
    repeated int32 split_mutation_positions=5;
    repeated fixed32 split_mutation_other_fields=6;
    repeated int32 shared_mutation_positions=7;
    repeated fixed32 shared_mutation_other_fields=8;
    uint64 sample_id=9;
}

message target{
    uint64 target_node_id=1;
    uint64 parent_node_id=2;
    repeated int32 sample_mutation_positions=3;
    repeated fixed32 sample_mutation_other_fields=4;
    repeated int32 split_mutation_positions=5;
    repeated fixed32 split_mutation_other_fields=6;
    repeated int32 shared_mutation_positions=7;
    repeated fixed32 shared_mutation_other_fields=8;
}


message search_result{
    uint64 sample_id=1;
    repeated target place_targets=2;
}

message mutation_at_each_pos{
    repeated int64 node_id=1;
    repeated int32 mut=2;
}

message mutation_collection{
    int64 node_idx=1;
    repeated int32 positions=3;
    repeated fixed32 other_fields=4;
}