Sigminer v1.0.4

Merge pull request #157 from ShixiangWang/devel

Devel

v0.1.5

sigminer v0.1.5

• update introduction for package sigminer
• fix text problem provided by CRAN check team
• add sig_get_similarity function
• add toy datasets & update examples
• fix typo in sig_assign_samples
• export read_maf
• update README

sigminer v0.1.4

• add examples for all exported functions

sigminer v0.1.3

• add sig_summarize_subtypes function for summarize subtype data
• add draw_subtypes_comparison function for plotting summarized data from sig_summarize_subtypes function

sigminer v0.1.2

• add sig_get_correlation function
• add draw_sig_corrplot function

sigminer v0.1.1

• add subset.CopyNumber() for subset CopyNumber object
• add genome_measure slot for CopyNumber object

sigminer v0.1.0

• Added a NEWS.md file to track changes to the package.
• Finish basic functions, including
  • read data
  • prepare data
  • estimate signature number
  • extract signatures
  • plot copy number profile
  • plot signature profile
  • plot signature activity
  • ...

v0.1.3

see news.md

sigminer v0.1.1

• add subset.CopyNumber() for subset CopyNumber object
• add genome_measure slot for CopyNumber object

sigminer v0.1.0

• Added a NEWS.md file to track changes to the package.
• Finish basic functions, including
  • read data
  • prepare data
  • estimate signature number
  • extract signatures
  • plot copy number profile
  • plot signature profile
  • plot signature activity
  • ...