diff --git a/CRAN-RELEASE b/CRAN-RELEASE index 46e902af..c1ea2fbb 100644 --- a/CRAN-RELEASE +++ b/CRAN-RELEASE @@ -1,2 +1,2 @@ -This package was submitted to CRAN on 2021-02-19. -Once it is accepted, delete this file and tag the release (commit d3ae8d4). +This package was submitted to CRAN on 2021-03-30. +Once it is accepted, delete this file and tag the release (commit 7e2ea8d). diff --git a/NEWS.md b/NEWS.md index 6688e2a8..9b88cfb1 100644 --- a/NEWS.md +++ b/NEWS.md @@ -2,6 +2,7 @@ ## BUG REPORTS +- Fixed the SigProfiler installation error due to Python version in conda environment. - Fixed classification bug due to repeated function name `call_component`. - Fixed the bug when `read_vcf()` with `##` commented VCF files. @@ -23,7 +24,7 @@ for (i in c("latest_SBS_GRCh37", "latest_DBS_GRCh37", "latest_ID_GRCh37", - Updated `keep_only_pass` to `FALSE` at default. - Added RSS and unexplained variance calculation in `get_sig_rec_similarity()`. - Added data check and filter in `output_tally()` and `show_catalogue()`. -- Enhanced `show_group_enrichment()` (#353). +- Enhanced `show_group_enrichment()` (#353) & added a new option to cluster rows. - Removed unnecessary CN classifications code in recent development. ## NEW FUNCTIONS diff --git a/docs/articles/sigminer.html b/docs/articles/sigminer.html index 4bac36ad..e22e0118 100644 --- a/docs/articles/sigminer.html +++ b/docs/articles/sigminer.html @@ -83,7 +83,7 @@

A Quick Start of sigminer Package

Shixiang Wang ( wangshx@shanghaitech.edu.cn )

-

2021-03-29

+

2021-03-30

Source: vignettes/sigminer.Rmd diff --git a/docs/news/index.html b/docs/news/index.html index c717b90a..9d3075c7 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -133,6 +133,7 @@

BUG REPORTS

@@ -157,7 +158,7 @@

  • Updated keep_only_pass to FALSE at default.
  • Added RSS and unexplained variance calculation in get_sig_rec_similarity().
  • Added data check and filter in output_tally() and show_catalogue().
  • -
  • Enhanced show_group_enrichment() (#353).
  • +
  • Enhanced show_group_enrichment() (#353) & added a new option to cluster rows.
  • Removed unnecessary CN classifications code in recent development.
  • diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 98046432..1ef6d0a2 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -3,5 +3,5 @@ pkgdown: 1.6.1 pkgdown_sha: ~ articles: sigminer: sigminer.html -last_built: 2021-03-29T09:04Z +last_built: 2021-03-30T01:34Z