From 011d8b2c4560a2f714b6d92ba67c27680e543fad Mon Sep 17 00:00:00 2001
From: Patrick Roddy <patrickjamesroddy@gmail.com>
Date: Fri, 10 Nov 2023 15:31:00 +0000
Subject: [PATCH] Add template for `Work Achieved` slides & option to navigate
 back to home (#33)

---
 slides/index.html                     | 130 +----
 slides/pre-workshop-slides/index.html | 796 ++++++++++++++++++++++++++
 slides/work-achieved/index.html       | 673 ++++++++++++++++++++++
 3 files changed, 1471 insertions(+), 128 deletions(-)
 create mode 100644 slides/pre-workshop-slides/index.html
 create mode 100644 slides/work-achieved/index.html

diff --git a/slides/index.html b/slides/index.html
index 52c5575..85dae48 100644
--- a/slides/index.html
+++ b/slides/index.html
@@ -309,137 +309,11 @@ <h2 class="title">
 </div>
 
 <p class="date">9th & 10th of November 2023</p>
-</section>
-
-
-<!-- New slide -->
-<section id="workflow" class="slide level2">
-  <h2>🔧 Real-time AI Workflow for Surgery</h2>
-  
-  <a href="https://github.com/SciKit-Surgery/cmicHACKS2/">
-  <img src = "figures/workflow/outputs/drawing-v00.png" style="max-width: 105%;" ></img>
-  </href>
-  </a>
-  
-  </section>
-
-
-
- <!-- New slide -->
-<section id="demo" class="slide level2">
-  <h2>🔥 Demo</h2>
-
-  Running colon.engine.fp32 model with VideoStreamReplayer on Clara-AGX
-
-  <pre><code>
-  python colonoscopy_segmentation.py --data /workspace/holohub/data/colonoscopy_segmentation
-  </code></pre>
-  
-  <video controls="" width="" height="" muted="" loop="" autoplay="">
-    <source src="figures/video_python_colonoscopy_segmentation_py.mp4" type="video/mp4">
-    </video>
-  
-  </section>
- 
-
-    
-
-<!-- New slide -->
-<section id="agenda" class="slide level2">
-  <h2>📅 Agenda</h2>
-  
-  <a href="https://github.com/SciKit-Surgery/cmicHACKS2/">
-  <img src = "figures/agenda/outputs/drawing-v00.png" style="max-width: 105%;" ></img>
-  </href>
-  </a>
-  
-  </section>
-
-
-<!-- New slide -->
-<section id="learning-outcomes" class="slide level2">
-<h2>🎒 Learning outcomes</h2>
-
-<ul type="1">
-
-<li><p>
-	Participants will learn to train, optimise, test and deploy real-time AI models for segmentation tasks, 
-	</p></li>
-<li><p>
-	Participants will learn good software practices to contribute to our open-source projects aligning with medical device software standard (IEC 62304), and
-	</p></li>
-<li><p>
-  	Participants will have the chance to work with NVIDIA Clara AGX - A Universal computing architecture for next-generation AI medical instruments.
-</p></li>
-
-</ul>
 
+<u><a href="./pre-workshop-slides">Pre-Workshop Slides</a></u>
+<u><a href="./work-achieved">Work Achieved</a></u>
 </section>
 
-
-<!-- New slide -->
-<section id="github" class="slide level2">
-  <h2>💻 GitHub project & discussions</h2>
-  
-  <a href="https://github.com/SciKit-Surgery/cmicHACKS2/">
-  <img src = "figures/github-project/outputs/drawing-v00.png" style="max-width: 105%;" ></img>
-  </href>
-  </a>
-  
-  </section>
-
-
-
-
-<!-- New slide -->
-<section id="acknowledgements" class="slide level2">
-  <h2>🙌 Acknowledgements</h2>
-  
-  <ul class="roman">
-  
-   <li>
-    <p>UCL Centre for Medical Image Computing (CMIC)</p>
-  
-   <ul class="roman">
-    <li style="font-size:20px";>
-      Snigdha Sen and Florence Townend
- </li>
-   </ul>
-   </li>
-  
-   <li>
-    <p>Healthcare AI, NVIDIA </p>
-   <ul class="roman">
-    <li style="font-size:20px";>
-      Mikael Brudfors</li>
-   </ul>
-   </li>
-  
-   <li>
-    <p>Advanced Research Computing Centre (ARC)</p>
-  
-   <ul class="roman">
-    <li style="font-size:20px";>
-      Steve Thompson</li>
-   </ul>
-   </li>
-  
-   <li>
-    <p>Wellcome / EPSRC Centre for Interventional and Surgical Sciences (WEISS)</p>
-   <ul class="roman">
-    <li style="font-size:20px";>
-    Sophia Bano and Matt Clarkson </li>
-   </ul>
-   </li>
-  
-  
-  </ul>
-  
-  </section>
-  
-
-
-
 <!-- =================================================================== -->
 
   </div>
diff --git a/slides/pre-workshop-slides/index.html b/slides/pre-workshop-slides/index.html
new file mode 100644
index 0000000..e6f0f5f
--- /dev/null
+++ b/slides/pre-workshop-slides/index.html
@@ -0,0 +1,796 @@
+<!DOCTYPE html>
+<html lang="en"><head>
+<script src="../libs/clipboard/clipboard.min.js"></script>
+<script src="../libs/quarto-html/tabby.min.js"></script>
+<script src="../libs/quarto-html/popper.min.js"></script>
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+<link href="../libs/quarto-html/tippy.css" rel="stylesheet">
+<link href="../libs/quarto-html/quarto-html.min.css" rel="stylesheet" data-mode="light">
+<link href="../libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles"><meta charset="utf-8">
+  <meta name="generator" content="quarto-1.2.335">
+
+  <meta name="author" content="Miguel Xochicale">
+  <meta name="dcterms.date" content="2023-11-03">
+  <title>slides for cmicHACKs</title>
+  <meta name="apple-mobile-web-app-capable" content="yes">
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+</head>
+
+<body class="quarto-light">
+  <div class="reveal">
+    <div class="slides">
+      
+
+
+<!-- =================================================================== -->
+
+<!-- First slide -->
+<section id="workflow" class="slide level2">
+  <h2>🔧 Real-time AI Workflow for Surgery</h2>
+  
+  <a href="https://github.com/SciKit-Surgery/cmicHACKS2/">
+  <img src = "../figures/workflow/outputs/drawing-v00.png" style="max-width: 105%;" ></img>
+  </href>
+  </a>
+  
+  </section>
+
+
+
+ <!-- New slide -->
+<section id="demo" class="slide level2">
+  <h2>🔥 Demo</h2>
+
+  Running colon.engine.fp32 model with VideoStreamReplayer on Clara-AGX
+
+  <pre><code>
+  python colonoscopy_segmentation.py --data /workspace/holohub/data/colonoscopy_segmentation
+  </code></pre>
+  
+  <video controls="" width="" height="" muted="" loop="" autoplay="">
+    <source src="../figures/video_python_colonoscopy_segmentation_py.mp4" type="video/mp4">
+    </video>
+  
+  </section>
+ 
+
+    
+
+<!-- New slide -->
+<section id="agenda" class="slide level2">
+  <h2>📅 Agenda</h2>
+  
+  <a href="https://github.com/SciKit-Surgery/cmicHACKS2/">
+  <img src = "../figures/agenda/outputs/drawing-v00.png" style="max-width: 105%;" ></img>
+  </href>
+  </a>
+  
+  </section>
+
+
+<!-- New slide -->
+<section id="learning-outcomes" class="slide level2">
+<h2>🎒 Learning outcomes</h2>
+
+<ul type="1">
+
+<li><p>
+	Participants will learn to train, optimise, test and deploy real-time AI models for segmentation tasks, 
+	</p></li>
+<li><p>
+	Participants will learn good software practices to contribute to our open-source projects aligning with medical device software standard (IEC 62304), and
+	</p></li>
+<li><p>
+  	Participants will have the chance to work with NVIDIA Clara AGX - A Universal computing architecture for next-generation AI medical instruments.
+</p></li>
+
+</ul>
+
+</section>
+
+
+<!-- New slide -->
+<section id="github" class="slide level2">
+  <h2>💻 GitHub project & discussions</h2>
+  
+  <a href="https://github.com/SciKit-Surgery/cmicHACKS2/">
+  <img src = "../figures/github-project/outputs/drawing-v00.png" style="max-width: 105%;" ></img>
+  </href>
+  </a>
+  
+  </section>
+
+
+
+
+<!-- New slide -->
+<section id="acknowledgements" class="slide level2">
+  <h2>🙌 Acknowledgements</h2>
+  
+  <ul class="roman">
+  
+   <li>
+    <p>UCL Centre for Medical Image Computing (CMIC)</p>
+  
+   <ul class="roman">
+    <li style="font-size:20px";>
+      Snigdha Sen and Florence Townend
+ </li>
+   </ul>
+   </li>
+  
+   <li>
+    <p>Healthcare AI, NVIDIA </p>
+   <ul class="roman">
+    <li style="font-size:20px";>
+      Mikael Brudfors</li>
+   </ul>
+   </li>
+  
+   <li>
+    <p>Advanced Research Computing Centre (ARC)</p>
+  
+   <ul class="roman">
+    <li style="font-size:20px";>
+      Steve Thompson</li>
+   </ul>
+   </li>
+  
+   <li>
+    <p>Wellcome / EPSRC Centre for Interventional and Surgical Sciences (WEISS)</p>
+   <ul class="roman">
+    <li style="font-size:20px";>
+    Sophia Bano and Matt Clarkson </li>
+   </ul>
+   </li>
+  
+  
+  </ul>
+  
+  </section>
+  
+
+
+
+<!-- =================================================================== -->
+
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+        embedded: false,
+
+        // Flags if we should show a help overlay when the questionmark
+        // key is pressed
+        help: true,
+
+        // Flags if it should be possible to pause the presentation (blackout)
+        pause: true,
+
+        // Flags if speaker notes should be visible to all viewers
+        showNotes: false,
+
+        // Global override for autoplaying embedded media (null/true/false)
+        autoPlayMedia: null,
+
+        // Global override for preloading lazy-loaded iframes (null/true/false)
+        preloadIframes: null,
+
+        // Number of milliseconds between automatically proceeding to the
+        // next slide, disabled when set to 0, this value can be overwritten
+        // by using a data-autoslide attribute on your slides
+        autoSlide: 0,
+
+        // Stop auto-sliding after user input
+        autoSlideStoppable: true,
+
+        // Use this method for navigation when auto-sliding
+        autoSlideMethod: null,
+
+        // Specify the average time in seconds that you think you will spend
+        // presenting each slide. This is used to show a pacing timer in the
+        // speaker view
+        defaultTiming: null,
+
+        // Enable slide navigation via mouse wheel
+        mouseWheel: false,
+
+        // The display mode that will be used to show slides
+        display: 'block',
+
+        // Hide cursor if inactive
+        hideInactiveCursor: true,
+
+        // Time before the cursor is hidden (in ms)
+        hideCursorTime: 5000,
+
+        // Opens links in an iframe preview overlay
+        previewLinks: false,
+
+        // Transition style (none/fade/slide/convex/concave/zoom)
+        transition: 'none',
+
+        // Transition speed (default/fast/slow)
+        transitionSpeed: 'default',
+
+        // Transition style for full page slide backgrounds
+        // (none/fade/slide/convex/concave/zoom)
+        backgroundTransition: 'none',
+
+        // Number of slides away from the current that are visible
+        viewDistance: 3,
+
+        // Number of slides away from the current that are visible on mobile
+        // devices. It is advisable to set this to a lower number than
+        // viewDistance in order to save resources.
+        mobileViewDistance: 2,
+
+        // The "normal" size of the presentation, aspect ratio will be preserved
+        // when the presentation is scaled to fit different resolutions. Can be
+        // specified using percentage units.
+        width: 1050,
+
+        height: 700,
+
+        // Factor of the display size that should remain empty around the content
+        margin: 0.1,
+
+        math: {
+          mathjax: 'https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/MathJax.js',
+          config: 'TeX-AMS_HTML-full',
+          tex2jax: {
+            inlineMath: [['\\(','\\)']],
+            displayMath: [['\\[','\\]']],
+            balanceBraces: true,
+            processEscapes: false,
+            processRefs: true,
+            processEnvironments: true,
+            preview: 'TeX',
+            skipTags: ['script','noscript','style','textarea','pre','code'],
+            ignoreClass: 'tex2jax_ignore',
+            processClass: 'tex2jax_process'
+          },
+        },
+
+        // reveal.js plugins
+        plugins: [QuartoLineHighlight, PdfExport, RevealMenu, QuartoSupport,
+
+          RevealMath,
+          RevealNotes,
+          RevealSearch,
+          RevealZoom
+        ]
+      });
+    </script>
+    
+    <script>
+      // htmlwidgets need to know to resize themselves when slides are shown/hidden.
+      // Fire the "slideenter" event (handled by htmlwidgets.js) when the current
+      // slide changes (different for each slide format).
+      (function () {
+        // dispatch for htmlwidgets
+        function fireSlideEnter() {
+          const event = window.document.createEvent("Event");
+          event.initEvent("slideenter", true, true);
+          window.document.dispatchEvent(event);
+        }
+
+        function fireSlideChanged(previousSlide, currentSlide) {
+          fireSlideEnter();
+
+          // dispatch for shiny
+          if (window.jQuery) {
+            if (previousSlide) {
+              window.jQuery(previousSlide).trigger("hidden");
+            }
+            if (currentSlide) {
+              window.jQuery(currentSlide).trigger("shown");
+            }
+          }
+        }
+
+        // hookup for slidy
+        if (window.w3c_slidy) {
+          window.w3c_slidy.add_observer(function (slide_num) {
+            // slide_num starts at position 1
+            fireSlideChanged(null, w3c_slidy.slides[slide_num - 1]);
+          });
+        }
+
+      })();
+    </script>
+
+    <script id="quarto-html-after-body" type="application/javascript">
+    window.document.addEventListener("DOMContentLoaded", function (event) {
+      const toggleBodyColorMode = (bsSheetEl) => {
+        const mode = bsSheetEl.getAttribute("data-mode");
+        const bodyEl = window.document.querySelector("body");
+        if (mode === "dark") {
+          bodyEl.classList.add("quarto-dark");
+          bodyEl.classList.remove("quarto-light");
+        } else {
+          bodyEl.classList.add("quarto-light");
+          bodyEl.classList.remove("quarto-dark");
+        }
+      }
+      const toggleBodyColorPrimary = () => {
+        const bsSheetEl = window.document.querySelector("link#quarto-bootstrap");
+        if (bsSheetEl) {
+          toggleBodyColorMode(bsSheetEl);
+        }
+      }
+      toggleBodyColorPrimary();  
+      const tabsets =  window.document.querySelectorAll(".panel-tabset-tabby")
+      tabsets.forEach(function(tabset) {
+        const tabby = new Tabby('#' + tabset.id);
+      });
+      const clipboard = new window.ClipboardJS('.code-copy-button', {
+        target: function(trigger) {
+          return trigger.previousElementSibling;
+        }
+      });
+      clipboard.on('success', function(e) {
+        // button target
+        const button = e.trigger;
+        // don't keep focus
+        button.blur();
+        // flash "checked"
+        button.classList.add('code-copy-button-checked');
+        var currentTitle = button.getAttribute("title");
+        button.setAttribute("title", "Copied!");
+        let tooltip;
+        if (window.bootstrap) {
+          button.setAttribute("data-bs-toggle", "tooltip");
+          button.setAttribute("data-bs-placement", "left");
+          button.setAttribute("data-bs-title", "Copied!");
+          tooltip = new bootstrap.Tooltip(button, 
+            { trigger: "manual", 
+              customClass: "code-copy-button-tooltip",
+              offset: [0, -8]});
+          tooltip.show();    
+        }
+        setTimeout(function() {
+          if (tooltip) {
+            tooltip.hide();
+            button.removeAttribute("data-bs-title");
+            button.removeAttribute("data-bs-toggle");
+            button.removeAttribute("data-bs-placement");
+          }
+          button.setAttribute("title", currentTitle);
+          button.classList.remove('code-copy-button-checked');
+        }, 1000);
+        // clear code selection
+        e.clearSelection();
+      });
+      function tippyHover(el, contentFn) {
+        const config = {
+          allowHTML: true,
+          content: contentFn,
+          maxWidth: 500,
+          delay: 100,
+          arrow: false,
+          appendTo: function(el) {
+              return el.closest('section.slide') || el.parentElement;
+          },
+          interactive: true,
+          interactiveBorder: 10,
+          theme: 'quarto-reveal',
+          placement: 'bottom-start'
+        };
+          config['offset'] = [0,0];
+          config['maxWidth'] = 700;
+        window.tippy(el, config); 
+      }
+      const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
+      for (var i=0; i<noterefs.length; i++) {
+        const ref = noterefs[i];
+        tippyHover(ref, function() {
+          // use id or data attribute instead here
+          let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href');
+          try { href = new URL(href).hash; } catch {}
+          const id = href.replace(/^#\/?/, "");
+          const note = window.document.getElementById(id);
+          return note.innerHTML;
+        });
+      }
+      const findCites = (el) => {
+        const parentEl = el.parentElement;
+        if (parentEl) {
+          const cites = parentEl.dataset.cites;
+          if (cites) {
+            return {
+              el,
+              cites: cites.split(' ')
+            };
+          } else {
+            return findCites(el.parentElement)
+          }
+        } else {
+          return undefined;
+        }
+      };
+      var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]');
+      for (var i=0; i<bibliorefs.length; i++) {
+        const ref = bibliorefs[i];
+        const citeInfo = findCites(ref);
+        if (citeInfo) {
+          tippyHover(citeInfo.el, function() {
+            var popup = window.document.createElement('div');
+            citeInfo.cites.forEach(function(cite) {
+              var citeDiv = window.document.createElement('div');
+              citeDiv.classList.add('hanging-indent');
+              citeDiv.classList.add('csl-entry');
+              var biblioDiv = window.document.getElementById('ref-' + cite);
+              if (biblioDiv) {
+                citeDiv.innerHTML = biblioDiv.innerHTML;
+              }
+              popup.appendChild(citeDiv);
+            });
+            return popup.innerHTML;
+          });
+        }
+      }
+    });
+    </script>
+    
+
+</body></html>
diff --git a/slides/work-achieved/index.html b/slides/work-achieved/index.html
new file mode 100644
index 0000000..be970e2
--- /dev/null
+++ b/slides/work-achieved/index.html
@@ -0,0 +1,673 @@
+<!DOCTYPE html>
+<html lang="en"><head>
+<script src="../libs/clipboard/clipboard.min.js"></script>
+<script src="../libs/quarto-html/tabby.min.js"></script>
+<script src="../libs/quarto-html/popper.min.js"></script>
+<script src="../libs/quarto-html/tippy.umd.min.js"></script>
+<link href="../libs/quarto-html/tippy.css" rel="stylesheet">
+<link href="../libs/quarto-html/quarto-html.min.css" rel="stylesheet" data-mode="light">
+<link href="../libs/quarto-html/quarto-syntax-highlighting.css" rel="stylesheet" id="quarto-text-highlighting-styles"><meta charset="utf-8">
+  <meta name="generator" content="quarto-1.2.335">
+
+  <meta name="author" content="Miguel Xochicale">
+  <meta name="dcterms.date" content="2023-11-03">
+  <title>slides for cmicHACKs</title>
+  <meta name="apple-mobile-web-app-capable" content="yes">
+  <meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
+  <meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no, minimal-ui">
+  <link rel="stylesheet" href="../libs/revealjs/dist/reset.css">
+  <link rel="stylesheet" href="../libs/revealjs/dist/reveal.css">
+  <style>
+    code{white-space: pre-wrap;}
+    span.smallcaps{font-variant: small-caps;}
+    div.columns{display: flex; gap: min(4vw, 1.5em);}
+    div.column{flex: auto; overflow-x: auto;}
+    div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
+    ul.task-list{list-style: none;}
+    ul.task-list li input[type="checkbox"] {
+      width: 0.8em;
+      margin: 0 0.8em 0.2em -1.6em;
+      vertical-align: middle;
+    }
+  </style>
+  <link rel="stylesheet" href="../libs/revealjs/dist/theme/quarto2.css" id="theme">
+  <link href="../libs/revealjs/plugin/quarto-line-highlight/line-highlight.css" rel="stylesheet">
+  <link href="../libs/revealjs/plugin/reveal-menu/menu.css" rel="stylesheet">
+  <link href="../libs/revealjs/plugin/reveal-menu/quarto-menu.css" rel="stylesheet">
+  <link href="../libs/revealjs/plugin/quarto-support/footer.css" rel="stylesheet">
+  <style type="text/css">
+
+  .callout {
+    margin-top: 1em;
+    margin-bottom: 1em;  
+    border-radius: .25rem;
+  }
+
+  .callout.callout-style-simple { 
+    padding: 0em 0.5em;
+    border-left: solid #acacac .3rem;
+    border-right: solid 1px silver;
+    border-top: solid 1px silver;
+    border-bottom: solid 1px silver;
+    display: flex;
+  }
+
+  .callout.callout-style-default {
+    border-left: solid #acacac .3rem;
+    border-right: solid 1px silver;
+    border-top: solid 1px silver;
+    border-bottom: solid 1px silver;
+  }
+
+  .callout .callout-body-container {
+    flex-grow: 1;
+  }
+
+  .callout.callout-style-simple .callout-body {
+    font-size: 1rem;
+    font-weight: 400;
+  }
+
+  .callout.callout-style-default .callout-body {
+    font-size: 0.9rem;
+    font-weight: 400;
+  }
+
+  .callout.callout-captioned.callout-style-simple .callout-body {
+    margin-top: 0.2em;
+  }
+
+  .callout:not(.callout-captioned) .callout-body {
+      display: flex;
+  }
+
+  .callout:not(.no-icon).callout-captioned.callout-style-simple .callout-content {
+    padding-left: 1.6em;
+  }
+
+  .callout.callout-captioned .callout-header {
+    padding-top: 0.2em;
+    margin-bottom: -0.2em;
+  }
+
+  .callout.callout-captioned .callout-caption  p {
+    margin-top: 0.5em;
+    margin-bottom: 0.5em;
+  }
+    
+  .callout.callout-captioned.callout-style-simple .callout-content  p {
+    margin-top: 0;
+  }
+
+  .callout.callout-captioned.callout-style-default .callout-content  p {
+    margin-top: 0.7em;
+  }
+
+  .callout.callout-style-simple div.callout-caption {
+    border-bottom: none;
+    font-size: .9rem;
+    font-weight: 600;
+    opacity: 75%;
+  }
+
+  .callout.callout-style-default  div.callout-caption {
+    border-bottom: none;
+    font-weight: 600;
+    opacity: 85%;
+    font-size: 0.9rem;
+    padding-left: 0.5em;
+    padding-right: 0.5em;
+  }
+
+  .callout.callout-style-default div.callout-content {
+    padding-left: 0.5em;
+    padding-right: 0.5em;
+  }
+
+  .callout.callout-style-simple .callout-icon::before {
+    height: 1rem;
+    width: 1rem;
+    display: inline-block;
+    content: "";
+    background-repeat: no-repeat;
+    background-size: 1rem 1rem;
+  }
+
+  .callout.callout-style-default .callout-icon::before {
+    height: 0.9rem;
+    width: 0.9rem;
+    display: inline-block;
+    content: "";
+    background-repeat: no-repeat;
+    background-size: 0.9rem 0.9rem;
+  }
+
+  .callout-caption {
+    display: flex
+  }
+    
+  .callout-icon::before {
+    margin-top: 1rem;
+    padding-right: .5rem;
+  }
+
+  .callout.no-icon::before {
+    display: none !important;
+  }
+
+  .callout.callout-captioned .callout-body > .callout-content > :last-child {
+    margin-bottom: 0.5rem;
+  }
+
+  .callout.callout-captioned .callout-icon::before {
+    margin-top: .5rem;
+    padding-right: .5rem;
+  }
+
+  .callout:not(.callout-captioned) .callout-icon::before {
+    margin-top: 1rem;
+    padding-right: .5rem;
+  }
+
+  /* Callout Types */
+
+  </style>
+  <style type="text/css">
+    .reveal div.sourceCode {
+      margin: 0;
+      overflow: auto;
+    }
+    .reveal div.hanging-indent {
+      margin-left: 1em;
+      text-indent: -1em;
+    }
+    .reveal .slide:not(.center) {
+      height: 100%;
+    }
+    .reveal .slide.scrollable {
+      overflow-y: auto;
+    }
+    .reveal .footnotes {
+      height: 100%;
+      overflow-y: auto;
+    }
+    .reveal .slide .absolute {
+      position: absolute;
+      display: block;
+    }
+    .reveal .footnotes ol {
+      counter-reset: ol;
+      list-style-type: none; 
+      margin-left: 0;
+    }
+    .reveal .footnotes ol li:before {
+      counter-increment: ol;
+      content: counter(ol) ". "; 
+    }
+    .reveal .footnotes ol li > p:first-child {
+      display: inline-block;
+    }
+    .reveal .slide ul,
+    .reveal .slide ol {
+      margin-bottom: 0.5em;
+    }
+    .reveal .slide ul li,
+    .reveal .slide ol li {
+      margin-top: 0.4em;
+      margin-bottom: 0.2em;
+    }
+    .reveal .slide ul[role="tablist"] li {
+      margin-bottom: 0;
+    }
+    .reveal .slide ul li > *:first-child,
+    .reveal .slide ol li > *:first-child {
+      margin-block-start: 0;
+    }
+    .reveal .slide ul li > *:last-child,
+    .reveal .slide ol li > *:last-child {
+      margin-block-end: 0;
+    }
+    .reveal .slide .columns:nth-child(3) {
+      margin-block-start: 0.8em;
+    }
+    .reveal blockquote {
+      box-shadow: none;
+    }
+    .reveal .tippy-content>* {
+      margin-top: 0.2em;
+      margin-bottom: 0.7em;
+    }
+    .reveal .tippy-content>*:last-child {
+      margin-bottom: 0.2em;
+    }
+    .reveal .slide > img.stretch.quarto-figure-center,
+    .reveal .slide > img.r-stretch.quarto-figure-center {
+      display: block;
+      margin-left: auto;
+      margin-right: auto; 
+    }
+    .reveal .slide > img.stretch.quarto-figure-left,
+    .reveal .slide > img.r-stretch.quarto-figure-left  {
+      display: block;
+      margin-left: 0;
+      margin-right: auto; 
+    }
+    .reveal .slide > img.stretch.quarto-figure-right,
+    .reveal .slide > img.r-stretch.quarto-figure-right  {
+      display: block;
+      margin-left: auto;
+      margin-right: 0; 
+    }
+  </style>
+  <script src="../libs/htmlwidgets-1.6.1/htmlwidgets.js"></script>
+  <script src="../libs/jquery-1.12.4/jquery.min.js"></script>
+  <link href="../libs/leaflet-1.3.1/leaflet.css" rel="stylesheet">
+  <script src="../libs/leaflet-1.3.1/leaflet.js"></script>
+  <link href="../libs/leafletfix-1.0.0/leafletfix.css" rel="stylesheet">
+  <script src="../libs/proj4-2.6.2/proj4.min.js"></script>
+  <script src="../libs/Proj4Leaflet-1.0.1/proj4leaflet.js"></script>
+  <link href="../libs/rstudio_leaflet-1.3.1/rstudio_leaflet.css" rel="stylesheet">
+  <script src="../libs/leaflet-binding-2.1.2/leaflet.js"></script>
+</head>
+
+<body class="quarto-light">
+  <div class="reveal">
+    <div class="slides">
+      
+
+
+<!-- =================================================================== -->
+
+<!-- First slide -->
+<section id="workflow" class="slide level2">
+  <h2></h2>
+</section>
+
+<!-- =================================================================== -->
+
+  </div>
+  </div>
+
+  <script>window.backupDefine = window.define; window.define = undefined;</script>
+  <script src="../libs/revealjs/dist/reveal.js"></script>
+  <!-- reveal.js plugins -->
+  <script src="../libs/revealjs/plugin/quarto-line-highlight/line-highlight.js"></script>
+  <script src="../libs/revealjs/plugin/pdf-export/pdfexport.js"></script>
+  <script src="../libs/revealjs/plugin/reveal-menu/menu.js"></script>
+  <script src="../libs/revealjs/plugin/reveal-menu/quarto-menu.js"></script>
+  <script src="../libs/revealjs/plugin/quarto-support/support.js"></script>
+  
+
+  <script src="../libs/revealjs/plugin/notes/notes.js"></script>
+  <script src="../libs/revealjs/plugin/search/search.js"></script>
+  <script src="../libs/revealjs/plugin/zoom/zoom.js"></script>
+  <script src="../libs/revealjs/plugin/math/math.js"></script>
+  <script>window.define = window.backupDefine; window.backupDefine = undefined;</script>
+
+  <script>
+
+// Full list of configuration options available at:
+// https://revealjs.com/config/
+Reveal.initialize({
+'controlsAuto': true,
+'previewLinksAuto': false,
+'smaller': false,
+'pdfSeparateFragments': false,
+'autoAnimateEasing': "ease",
+'autoAnimateDuration': 1,
+'autoAnimateUnmatched': true,
+'menu': {"side":"left","useTextContentForMissingTitles":true,"markers":false,"loadIcons":false,"custom":[
+    {"title":"Tools","icon":"<i class=\"fas fa-gear\"></i>","content":"<ul class=\"slide-menu-items\">\n<li class=\"slide-tool-item active\" data-item=\"0\"><a href=\"..\"><kbd>h</kbd> Homepage</a></li>\n<li class=\"slide-tool-item active\" data-item=\"1\"><a href=\"#\" onclick=\"RevealMenuToolHandlers.fullscreen(event)\"><kbd>f</kbd> Fullscreen</a></li>\n<li class=\"slide-tool-item\" data-item=\"2\"><a href=\"#\" onclick=\"RevealMenuToolHandlers.speakerMode(event)\"><kbd>s</kbd> Speaker View</a></li>\n<li class=\"slide-tool-item\" data-item=\"3\"><a href=\"#\" onclick=\"RevealMenuToolHandlers.overview(event)\"><kbd>o</kbd> Slide Overview</a></li>\n<li class=\"slide-tool-item\" data-item=\"4\"><a href=\"#\" onclick=\"RevealMenuToolHandlers.overview(event)\"><kbd>e</kbd> PDF Export Mode</a></li>\n<li class=\"slide-tool-item\" data-item=\"5\"><a href=\"#\" onclick=\"RevealMenuToolHandlers.keyboardHelp(event)\"><kbd>?</kbd> Keyboard Help</a></li>\n</ul>"}
+],"openButton":true},
+'smaller': false,
+ 
+        // Display controls in the bottom right corner
+        controls: false,
+
+        // Help the user learn the controls by providing hints, for example by
+        // bouncing the down arrow when they first encounter a vertical slide
+        controlsTutorial: false,
+
+        // Determines where controls appear, "edges" or "bottom-right"
+        controlsLayout: 'edges',
+
+        // Visibility rule for backwards navigation arrows; "faded", "hidden"
+        // or "visible"
+        controlsBackArrows: 'faded',
+
+        // Display a presentation progress bar
+        progress: true,
+
+        // Display the page number of the current slide
+        slideNumber: false,
+
+        // 'all', 'print', or 'speaker'
+        showSlideNumber: 'all',
+
+        // Add the current slide number to the URL hash so that reloading the
+        // page/copying the URL will return you to the same slide
+        hash: true,
+
+        // Start with 1 for the hash rather than 0
+        hashOneBasedIndex: false,
+
+        // Flags if we should monitor the hash and change slides accordingly
+        respondToHashChanges: true,
+
+        // Push each slide change to the browser history
+        history: true,
+
+        // Enable keyboard shortcuts for navigation
+        keyboard: true,
+
+        // Enable the slide overview mode
+        overview: true,
+
+        // Disables the default reveal.js slide layout (scaling and centering)
+        // so that you can use custom CSS layout
+        disableLayout: false,
+
+        // Vertical centering of slides
+        center: false,
+
+        // Enables touch navigation on devices with touch input
+        touch: true,
+
+        // Loop the presentation
+        loop: false,
+
+        // Change the presentation direction to be RTL
+        rtl: false,
+
+        // see https://revealjs.com/vertical-slides/#navigation-mode
+        navigationMode: 'linear',
+
+        // Randomizes the order of slides each time the presentation loads
+        shuffle: false,
+
+        // Turns fragments on and off globally
+        fragments: true,
+
+        // Flags whether to include the current fragment in the URL,
+        // so that reloading brings you to the same fragment position
+        fragmentInURL: false,
+
+        // Flags if the presentation is running in an embedded mode,
+        // i.e. contained within a limited portion of the screen
+        embedded: false,
+
+        // Flags if we should show a help overlay when the questionmark
+        // key is pressed
+        help: true,
+
+        // Flags if it should be possible to pause the presentation (blackout)
+        pause: true,
+
+        // Flags if speaker notes should be visible to all viewers
+        showNotes: false,
+
+        // Global override for autoplaying embedded media (null/true/false)
+        autoPlayMedia: null,
+
+        // Global override for preloading lazy-loaded iframes (null/true/false)
+        preloadIframes: null,
+
+        // Number of milliseconds between automatically proceeding to the
+        // next slide, disabled when set to 0, this value can be overwritten
+        // by using a data-autoslide attribute on your slides
+        autoSlide: 0,
+
+        // Stop auto-sliding after user input
+        autoSlideStoppable: true,
+
+        // Use this method for navigation when auto-sliding
+        autoSlideMethod: null,
+
+        // Specify the average time in seconds that you think you will spend
+        // presenting each slide. This is used to show a pacing timer in the
+        // speaker view
+        defaultTiming: null,
+
+        // Enable slide navigation via mouse wheel
+        mouseWheel: false,
+
+        // The display mode that will be used to show slides
+        display: 'block',
+
+        // Hide cursor if inactive
+        hideInactiveCursor: true,
+
+        // Time before the cursor is hidden (in ms)
+        hideCursorTime: 5000,
+
+        // Opens links in an iframe preview overlay
+        previewLinks: false,
+
+        // Transition style (none/fade/slide/convex/concave/zoom)
+        transition: 'none',
+
+        // Transition speed (default/fast/slow)
+        transitionSpeed: 'default',
+
+        // Transition style for full page slide backgrounds
+        // (none/fade/slide/convex/concave/zoom)
+        backgroundTransition: 'none',
+
+        // Number of slides away from the current that are visible
+        viewDistance: 3,
+
+        // Number of slides away from the current that are visible on mobile
+        // devices. It is advisable to set this to a lower number than
+        // viewDistance in order to save resources.
+        mobileViewDistance: 2,
+
+        // The "normal" size of the presentation, aspect ratio will be preserved
+        // when the presentation is scaled to fit different resolutions. Can be
+        // specified using percentage units.
+        width: 1050,
+
+        height: 700,
+
+        // Factor of the display size that should remain empty around the content
+        margin: 0.1,
+
+        math: {
+          mathjax: 'https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/MathJax.js',
+          config: 'TeX-AMS_HTML-full',
+          tex2jax: {
+            inlineMath: [['\\(','\\)']],
+            displayMath: [['\\[','\\]']],
+            balanceBraces: true,
+            processEscapes: false,
+            processRefs: true,
+            processEnvironments: true,
+            preview: 'TeX',
+            skipTags: ['script','noscript','style','textarea','pre','code'],
+            ignoreClass: 'tex2jax_ignore',
+            processClass: 'tex2jax_process'
+          },
+        },
+
+        // reveal.js plugins
+        plugins: [QuartoLineHighlight, PdfExport, RevealMenu, QuartoSupport,
+
+          RevealMath,
+          RevealNotes,
+          RevealSearch,
+          RevealZoom
+        ]
+      });
+    </script>
+    
+    <script>
+      // htmlwidgets need to know to resize themselves when slides are shown/hidden.
+      // Fire the "slideenter" event (handled by htmlwidgets.js) when the current
+      // slide changes (different for each slide format).
+      (function () {
+        // dispatch for htmlwidgets
+        function fireSlideEnter() {
+          const event = window.document.createEvent("Event");
+          event.initEvent("slideenter", true, true);
+          window.document.dispatchEvent(event);
+        }
+
+        function fireSlideChanged(previousSlide, currentSlide) {
+          fireSlideEnter();
+
+          // dispatch for shiny
+          if (window.jQuery) {
+            if (previousSlide) {
+              window.jQuery(previousSlide).trigger("hidden");
+            }
+            if (currentSlide) {
+              window.jQuery(currentSlide).trigger("shown");
+            }
+          }
+        }
+
+        // hookup for slidy
+        if (window.w3c_slidy) {
+          window.w3c_slidy.add_observer(function (slide_num) {
+            // slide_num starts at position 1
+            fireSlideChanged(null, w3c_slidy.slides[slide_num - 1]);
+          });
+        }
+
+      })();
+    </script>
+
+    <script id="quarto-html-after-body" type="application/javascript">
+    window.document.addEventListener("DOMContentLoaded", function (event) {
+      const toggleBodyColorMode = (bsSheetEl) => {
+        const mode = bsSheetEl.getAttribute("data-mode");
+        const bodyEl = window.document.querySelector("body");
+        if (mode === "dark") {
+          bodyEl.classList.add("quarto-dark");
+          bodyEl.classList.remove("quarto-light");
+        } else {
+          bodyEl.classList.add("quarto-light");
+          bodyEl.classList.remove("quarto-dark");
+        }
+      }
+      const toggleBodyColorPrimary = () => {
+        const bsSheetEl = window.document.querySelector("link#quarto-bootstrap");
+        if (bsSheetEl) {
+          toggleBodyColorMode(bsSheetEl);
+        }
+      }
+      toggleBodyColorPrimary();  
+      const tabsets =  window.document.querySelectorAll(".panel-tabset-tabby")
+      tabsets.forEach(function(tabset) {
+        const tabby = new Tabby('#' + tabset.id);
+      });
+      const clipboard = new window.ClipboardJS('.code-copy-button', {
+        target: function(trigger) {
+          return trigger.previousElementSibling;
+        }
+      });
+      clipboard.on('success', function(e) {
+        // button target
+        const button = e.trigger;
+        // don't keep focus
+        button.blur();
+        // flash "checked"
+        button.classList.add('code-copy-button-checked');
+        var currentTitle = button.getAttribute("title");
+        button.setAttribute("title", "Copied!");
+        let tooltip;
+        if (window.bootstrap) {
+          button.setAttribute("data-bs-toggle", "tooltip");
+          button.setAttribute("data-bs-placement", "left");
+          button.setAttribute("data-bs-title", "Copied!");
+          tooltip = new bootstrap.Tooltip(button, 
+            { trigger: "manual", 
+              customClass: "code-copy-button-tooltip",
+              offset: [0, -8]});
+          tooltip.show();    
+        }
+        setTimeout(function() {
+          if (tooltip) {
+            tooltip.hide();
+            button.removeAttribute("data-bs-title");
+            button.removeAttribute("data-bs-toggle");
+            button.removeAttribute("data-bs-placement");
+          }
+          button.setAttribute("title", currentTitle);
+          button.classList.remove('code-copy-button-checked');
+        }, 1000);
+        // clear code selection
+        e.clearSelection();
+      });
+      function tippyHover(el, contentFn) {
+        const config = {
+          allowHTML: true,
+          content: contentFn,
+          maxWidth: 500,
+          delay: 100,
+          arrow: false,
+          appendTo: function(el) {
+              return el.closest('section.slide') || el.parentElement;
+          },
+          interactive: true,
+          interactiveBorder: 10,
+          theme: 'quarto-reveal',
+          placement: 'bottom-start'
+        };
+          config['offset'] = [0,0];
+          config['maxWidth'] = 700;
+        window.tippy(el, config); 
+      }
+      const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
+      for (var i=0; i<noterefs.length; i++) {
+        const ref = noterefs[i];
+        tippyHover(ref, function() {
+          // use id or data attribute instead here
+          let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href');
+          try { href = new URL(href).hash; } catch {}
+          const id = href.replace(/^#\/?/, "");
+          const note = window.document.getElementById(id);
+          return note.innerHTML;
+        });
+      }
+      const findCites = (el) => {
+        const parentEl = el.parentElement;
+        if (parentEl) {
+          const cites = parentEl.dataset.cites;
+          if (cites) {
+            return {
+              el,
+              cites: cites.split(' ')
+            };
+          } else {
+            return findCites(el.parentElement)
+          }
+        } else {
+          return undefined;
+        }
+      };
+      var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]');
+      for (var i=0; i<bibliorefs.length; i++) {
+        const ref = bibliorefs[i];
+        const citeInfo = findCites(ref);
+        if (citeInfo) {
+          tippyHover(citeInfo.el, function() {
+            var popup = window.document.createElement('div');
+            citeInfo.cites.forEach(function(cite) {
+              var citeDiv = window.document.createElement('div');
+              citeDiv.classList.add('hanging-indent');
+              citeDiv.classList.add('csl-entry');
+              var biblioDiv = window.document.getElementById('ref-' + cite);
+              if (biblioDiv) {
+                citeDiv.innerHTML = biblioDiv.innerHTML;
+              }
+              popup.appendChild(citeDiv);
+            });
+            return popup.innerHTML;
+          });
+        }
+      }
+    });
+    </script>
+    
+
+</body></html>