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[EPIC] Visualising the Scaffolds within oSPARC #9

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2 of 4 tasks
frenchmatthew opened this issue Aug 12, 2024 · 0 comments
Open
2 of 4 tasks

[EPIC] Visualising the Scaffolds within oSPARC #9

frenchmatthew opened this issue Aug 12, 2024 · 0 comments
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@frenchmatthew
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frenchmatthew commented Aug 12, 2024

Problem

In tutorial one we would like to show that a Scaffold can be loaded and visualised using the sparc-imp package. This EPIC requires taking the Scaffold class generated by sparc-imp and visualising it in oSPARC.

Dependent issues.

#3

Solution:

  • Create a 'ground-truth' scaffold (which can be compared to the output of our class) using the MAP client.
  • Take this 'ground-truth' scaffold and plot it using PyVista. The plot should include all meshes in the scaffold and labels.
  • Reproduce the plot from the task above in oSPARC.
  • Use the Scaffold class to generate the VTK files and reproduce the plots from steps 2. and 3.
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