From 0511562d5ca2ab08ae73a345f824e2df86102cfc Mon Sep 17 00:00:00 2001 From: DianaSpurite <112383244+DianaSpurite@users.noreply.github.com> Date: Thu, 28 Sep 2023 14:34:29 +0200 Subject: [PATCH 01/16] Update ancientsinglegenome-hostassociated_samples.tsv Adding Caruana2023 samples --- ...entsinglegenome-hostassociated_samples.tsv | 39 +++++++++++++++++++ 1 file changed, 39 insertions(+) diff --git a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv index fd77195fc..63461a996 100644 --- a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv +++ b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv @@ -605,3 +605,42 @@ Parker2023 2023 10.1371/journal.ppat.1011404 Krakauer Berg, Peißen, Halle (Saal Parker2023 2023 10.1371/journal.ppat.1011404 Krakauer Berg, Peißen, Halle (Saale), Saxony-Anhalt 51.5 12.05 Germany KRA028 Homo sapiens 600 10.1371/journal.ppat.1011404 bacteria Yersinia pestis skeleton chromosome ENA raw PRJEB61096 ERS14884863 Parker2023 2023 10.1371/journal.ppat.1011404 Krakauer Berg, Peißen, Halle (Saale), Saxony-Anhalt 51.5 12.05 Germany KRA032 Homo sapiens 600 10.1371/journal.ppat.1011404 bacteria Yersinia pestis skeleton chromosome ENA raw PRJEB61096 ERS14884864 Long2023 2023 10.1371/journal.ppat.1011538 Convento del Beato Sante, Mombaroccio, Pesaro e Urbino 43.789 12.861 Italy Sante Brancorsini Homo sapiens 600 10.1371/journal.ppat.1011538 bacteria Brucella melitensis kidney stone chromosome SRA raw PRJNA966239 SRS17532534 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A1-Tooth Homo sapiens 3000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021185 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A2-Tooth Homo sapiens 3000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021186 +Caruana2023 2023 10.1007/s13313-023-00936-6 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNIII-Tooth Homo sapiens 3800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1647163 +Caruana2023 2023 10.1007/s13313-023-00936-6 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNII-Tooth Homo sapiens 3800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1660772 +Caruana2023 2023 10.1007/s13313-023-00936-6 Haunstetten Unterer Talweg 85 48.318 10.891 Germany Augsburg-Tooth Homo sapiens 4200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB19335 ERS1892067 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-011-Tooth Homo sapiens 1200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 PRJEB86458 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-004-Tooth Homo sapiens 1200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906198 +Caruana2023 2023 10.1007/s13313-023-00936-6 Gran Canaria 27.92 -15.547 Spain GranCanaria-005-Tooth Homo sapiens 1000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906199 +Caruana2023 2023 10.1007/s13313-023-00936-6 Gran Canaria 27.92 -15.547 Spain GranCanaria-008-Tooth Homo sapiens 1000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906202 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-012-Tooth Homo sapiens 1300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906203 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-013-Tooth Homo sapiens 1300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906204 +Caruana2023 2023 10.1007/s13313-023-00936-6 Teposcolula-Yucundaa; Mixteca Alta region, Oaxaca 17.502 -97.467 Mexico Tepos_35-Tooth Homo sapiens 400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23438 ERS2020227 +Caruana2023 2023 10.1007/s13313-023-00936-6 Cueva de los Lagos 41.962 -1.993 Spain Cueva_de_los_Lagos-Tooth Homo sapiens 4000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23467 ERS2059523 +Caruana2023 2023 10.1007/s13313-023-00936-6 Yámana 54.933 -67.616 Chile Yámana-Tooth Homo sapiens 800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24629 ERS2160137 +Caruana2023 2023 10.1007/s13313-023-00936-6 Vác 47.784 19.135 Hungary Vác-Mummy-Tissue Homo sapiens 200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tissue chromosome ENA raw PRJEB7454 ERS563409 +Caruana2023 2023 10.1007/s13313-023-00936-6 Maderas Enco -18.478 -70.312 Chile Chinchorro-Mummy-Bone Homo sapiens 200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793932 +Caruana2023 2023 10.1007/s13313-023-00936-6 "Piedra +Gorda" 23.6 -109.6 Mexico Pericues-BC28-Bone Homo sapiens 550 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793942 +Caruana2023 2023 10.1007/s13313-023-00936-6 l’Observance in Marseille 43.296 5.369 France Marseille-Tooth Homo sapiens 200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB12163 ERS1020860 +Caruana2023 2023 10.1007/s13313-023-00936-6 Saints Màrtirs Just i Pastor, Barcelona 41.387 2.168 Spain Barcelona-3031-Tooth Homo sapiens 1400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB13664 ERS1124787 +Caruana2023 2023 10.1007/s13313-023-00936-6 Saint-Laurent-de-la-Cabrerisse 43.084 2.7 France SLC-France-Tooth Homo sapiens 1300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24499 ERS2865271 +Caruana2023 2023 10.1007/s13313-023-00936-6 Karlova, Tartu 58.371 26.732 Estonia Karolva-Tooth Homo sapiens 4200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB32786 ERS3568107 +Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle 29.9 31.2 Egypt Abusir1655-Tooth Homo sapiens 3100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635957 +Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1595-Tooth Homo sapiens 2900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635963 +Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1668-Tooth Homo sapiens 2200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635986,ERS3636003 +Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1671-Tooth Homo sapiens 2100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636004 +Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1607-Tooth Homo sapiens 1900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636032 +Caruana2023 2023 10.1007/s13313-023-00936-6 Dacaozi site, Pingan county, Qinghai province 36.5 102.108 China Dacaozi-Tooth Homo sapiens 1900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36297 ERS4255307 +Caruana2023 2023 10.1007/s13313-023-00936-6 Riga 56.95 24.121 Latvia Riga_Cemetery-Tooth Homo sapiens 300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36413 ERS4266549 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chincha -13.476 -76.016 Peru Chincha-UC12-12-Tooth Homo sapiens 400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421181 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chincha -13.476 -76.016 Peru Chincha-UC12-24-Tooth Homo sapiens 400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421183 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chincha -13.477 -76.025 Peru Chincha-UC8-8168-Tooth Homo sapiens 300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421185 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chiribaya Alta, Cemetery 1 -17.635 -71.293 Peru Chiribaya_Alta-Bone Homo sapiens 800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS591994 +Caruana2023 2023 10.1007/s13313-023-00936-6 El Yaral, Cemetery 2 -17.149 -70.924 Peru El_Yaral-Bone Homo sapiens 700 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS592075 +Caruana2023 2023 10.1007/s13313-023-00936-6 Laguna de los Condores -6.848 -77.698 Peru Peru-NA40-Bone Homo sapiens 1100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620293 +Caruana2023 2023 10.1007/s13313-023-00936-6 Laguna de los Condores -6.848 -77.698 Peru Peru-NA42-Bone Homo sapiens 1100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620295 +Caruana2023 2023 10.1007/s13313-023-00936-6 Pueblo Bonito, New Mexico 36.06 -107.961 USA Pueblo_Bonito-Tooth Homo sapiens 900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA353635 SRS1853899 +Caruana2023 2023 10.1007/s13313-023-00936-6 Gniezno, Wielkopolska 52.54 17.59 Poland Gniezno-Tooth Homo sapiens 1000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA354503 SRS1815300 +Caruana2023 2023 10.1007/s13313-023-00936-6 Punta Candelero 18.091 -65.789 Puerto Rico Punta_Candelero-Tooth Homo sapiens 1100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA557308 SRS5212084 From 924520a6382f7c12d276c22bf6f67cfe13cdcb1f Mon Sep 17 00:00:00 2001 From: DianaSpurite <112383244+DianaSpurite@users.noreply.github.com> Date: Thu, 28 Sep 2023 14:40:39 +0200 Subject: [PATCH 02/16] Update ancientsinglegenome-hostassociated_libraries.tsv Adding Caruana2023 libraries --- ...tsinglegenome-hostassociated_libraries.tsv | 124 ++++++++++++++++++ 1 file changed, 124 insertions(+) diff --git a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv index a7341d755..aaa466427 100644 --- a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv +++ b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv @@ -2741,3 +2741,127 @@ Parker2023 2023 10.1371/journal.ppat.1011404 KRA032 ENA PRJEB61096 ERS14884864 K Parker2023 2023 10.1371/journal.ppat.1011404 KRA032 ENA PRJEB61096 ERS14884864 KRA032.A0103 single AmpliTaq Gold DNA none Illumina HiSeq 4000 PAIRED Targeted-Capture 34240226 ERR11202937 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/037/ERR11202937/ERR11202937_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/037/ERR11202937/ERR11202937_2.fastq.gz 360f8370041b6558afd149593a6a8595;da02c63d5f55963d7ae9c6ab6ea15402 553924381;611677182 Long2023 2023 10.1371/journal.ppat.1011538 Sante Brancorsini SRA PRJNA966239 SRS17532534 LMN01_S415 single AccuPrime Pfx DNA none Illumina HiSeq 1500 PAIRED WGS 26874306 SRR24420453 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR244/053/SRR24420453/SRR24420453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR244/053/SRR24420453/SRR24420453_2.fastq.gz d7b8d3754d7633e119f0a2769bd821a1;917b0e2ee6ad1bf51904061e7ab8d597 673258837;673103704 Long2023 2023 10.1371/journal.ppat.1011538 Sante Brancorsini SRA PRJNA966239 SRS17532534 LMN01_S301 single AccuPrime Pfx DNA none Illumina HiSeq 1500 PAIRED WGS 1731099 SRR24420454 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR244/054/SRR24420454/SRR24420454_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR244/054/SRR24420454/SRR24420454_2.fastq.gz 7d67f4001c48a53702e280edb68ddde1;e87eeebc190579aa3323845513e5128b 45760293;45221147 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046399 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046399/DRR046399.fastq.gz 59098fe5c2d339f49a29f62bb581df0d 3031799168 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046405 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046405/DRR046405.fastq.gz 73f76a8c76f4548200740792cec3e80f 1480013579 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R1 double Unknown none Illumina MiSeq PAIRED WGS 135268 DRR046406 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046406/DRR046406.fastq.gz 37c506c70b5f4384eac3daf49bbf1806 13168706 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R2 double Unknown none Illumina MiSeq PAIRED WGS 135268 DRR046407 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046407/DRR046407.fastq.gz b08daf33376d9b8769638c68ef9e1624 14586872 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R1 double Unknown none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046408 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046408/DRR046408.fastq.gz 792187bcc4f5a0837c33bfa9bcd45ff7 25135887359 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R2 double Unknown none Illumina MiSeq PAIRED WGS 77847 DRR046411 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046411/DRR046411.fastq.gz a185e6ef0736d5798b73d57eade9aefe 8570877 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046402 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046402/DRR046402.fastq.gz 251cfd9c110f0c258b92986757c5e08e 2236884763 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046398 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046398/DRR046398.fastq.gz dd07acfd074d7ab3de3a737a11a02bbf 2923006982 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046400 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046400/DRR046400.fastq.gz 9baaa4283c72e838b97cec348101b1e6 2739068719 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046401 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046401/DRR046401.fastq.gz 2c7dd699fe0ed1044b150de785c8ac16 2864519935 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046403 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046403/DRR046403.fastq.gz 05f383ec42a1d9c5d73e15c91b867904 2312625893 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046404 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046404/DRR046404.fastq.gz 4589fb0baa96aee3f653d2e6de17e5fd 1438715827 +Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R2 double Unknown none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046409 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046409/DRR046409.fastq.gz c66e84985b2b86e506713a055303f3fc 25985687100 +Caruana2023 2023 10.1007/s13313-023-00936-7 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R1 double Unknown none Illumina MiSeq PAIRED WGS 77847 DRR046410 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046410/DRR046410.fastq.gz 374b027632e96e155944a5ffff376fc3 7809572 +Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 SINGLE Targeted-Capture 163 ERR1937826 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/006/ERR1937826/ERR1937826.fastq.gz 4028690b02008c7d6934e4a399a3c324 8498 +Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2 paired fastq double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 PAIRED Targeted-Capture 76673447 ERR1937833 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_2.fastq.gz 9f5d8938ecfab81ff4b06cf5b85ecd84;9b0a31ebf902f6749b3d2bb66fe98583 3888369913;4105585278 +Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 SINGLE Targeted-Capture 5422 ERR1937825 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937825/ERR1937825.fastq.gz a0b9ad0f50ea8d3e84968e1a6b48a34f 196674 +Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE WGS 21 ERR1937828 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/008/ERR1937828/ERR1937828.fastq.gz 0853f9b447d7b2d3ea74c10e8e7b698a 882 +Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2 paired fastq double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 PAIRED Targeted-Capture 52435610 ERR1937834 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_2.fastq.gz 8bdc8dc708983ac9334f59ff5d3bca09;9b02c90be8f45c0a9bdcb138459bdd64 2172525415;2376886625 +Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE WGS 20404 ERR1937827 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/007/ERR1937827/ERR1937827.fastq.gz 6413c8cb99df1ce1762913cadf28329c 537498 +Caruana2023 2023 10.1007/s13313-023-00936-7 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 2 paired fastq double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 44375613 ERR1937835 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_2.fastq.gz 227dbeb7889d5b4e2f5188c56d079576;d0d9ee382a5ad825a4431ebfad77ba9f 2421609326;2479467479 +Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 807 ERR1942918 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1942918/ERR1942918.fastq.gz 8c002eac0175550cd4e5fd966261b50c 26359 +Caruana2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 318125040 ERR2112574 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112574/ERR2112574.fastq.gz d29e8511b8c860889920240560f28963 11592228429 +Caruana2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 320155752 ERR2112575 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112575/ERR2112575.fastq.gz 1c3931ef9c7b3198fd89eed4c4af79aa 11523747356 +Caruana2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 320577112 ERR2112576 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112576/ERR2112576.fastq.gz c01e8e624b5e7e542a6a53060eda2963 11612997118 +Caruana2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 286756923 ERR2112577 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112577/ERR2112577.fastq.gz 1b43fd6bdd9e0f372e0370426e502ae9 10175356811 +Caruana2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 165092355 ERR2112578 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112578/ERR2112578.fastq.gz a546c8d02e34ab7ba9bf9b9b70edc110 6042098938 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-004-Tooth ENA PRJEB86458 ERS1906198 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 32788454 ERR2111944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2111944/ERR2111944.fastq.gz 2268b27c14ddaa9fe8ba1994dca180b7 1476338852 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 83657790 ERR2111947 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2111947/ERR2111947.fastq.gz 28d80ed137a4f2749c8df338f1396296 4616384352 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 84678681 ERR2111948 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2111948/ERR2111948.fastq.gz 2670f6ee30cdb2e9cf25194b1d00352f 4487414231 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 41600057 ERR2111950 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/000/ERR2111950/ERR2111950.fastq.gz 7d2f61ffbc3704b514b1ad49c83cc2ea 2283826200 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42454995 ERR2111951 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2111951/ERR2111951.fastq.gz 166f95e2b9def23d98644c5c37f39841 2239935032 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 46432244 ERR2112075 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112075/ERR2112075.fastq.gz c3058a6ab2a74162e841055c2c9871e7 3315636400 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 41968696 ERR2112076 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112076/ERR2112076.fastq.gz c1f0637d92139b565497ff8eb58dc708 3024212774 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42694502 ERR2112077 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112077/ERR2112077.fastq.gz 527ea4fcb4e247423862d8d65850297f 2971810358 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 56519202 ERR2112078 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112078/ERR2112078.fastq.gz 746c40aa7f5364b424a8a010625ab555 4015798460 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 103034192 ERR2112082 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/002/ERR2112082/ERR2112082.fastq.gz b494900e3eb4faa8fc519510c3d18044 4339155003 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 48006465 ERR2112095 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112095/ERR2112095.fastq.gz aa23291e1ffa281f02cb00424cabca88 2904018843 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 46090647 ERR2112097 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112097/ERR2112097.fastq.gz a3bc3849f6ae72755564f0639badf10b 2763637774 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 34599863 ERR2111945 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2111945/ERR2111945.fastq.gz be2c0610c72a60232d3d2ceacfc45c15 1531332605 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 43607924 ERR2111949 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/009/ERR2111949/ERR2111949.fastq.gz c12312b0e05b7364e4ae34ff58dbed2b 2330733778 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 48025167 ERR2112074 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112074/ERR2112074.fastq.gz 56b44ec8a3f4a84f0e6e52f23a45244f 2650703816 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 51462140 ERR2112079 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/009/ERR2112079/ERR2112079.fastq.gz cb086c299d3dd88bea8b8497712d2f23 3674875735 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 52674925 ERR2112080 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/000/ERR2112080/ERR2112080.fastq.gz 444cfc9e7f1312e42f812bf1e0437f8b 3656995820 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 247085213 ERR2112083 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/003/ERR2112083/ERR2112083.fastq.gz 5e871b7f274fd4045af8ca7a99ba6fb1 12125066589 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 156625959 ERR2112084 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112084/ERR2112084.fastq.gz 1f89e2c52b4811dfcc047ed1ee608b7e 7764413478 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 95745866 ERR2112093 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/003/ERR2112093/ERR2112093.fastq.gz 7bd19b4ef5a6ac548a04fe4e67afc7cc 6033829981 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 97073096 ERR2112094 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112094/ERR2112094.fastq.gz 3d7cae0f6e17f95675644668c8b58c43 5838900641 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 30451552 ERR2185281 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/001/ERR2185281/ERR2185281.fastq.gz ab6526f8ff7e7706029265c64df6ffac 1188674769 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 28674836 ERR2185284 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/004/ERR2185284/ERR2185284.fastq.gz 25cd96b8767c4435b1fa287ffa9a57d9 1206388101 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 86740492 ERR2111946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2111946/ERR2111946.fastq.gz 810b089d785ebd1edbad3a41226ce5ad 4637501739 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 50136895 ERR2112081 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2112081/ERR2112081.fastq.gz 154863c74e9827eb9fee2b3a630ac19e 2230636146 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 37810056 ERR2112091 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2112091/ERR2112091.fastq.gz 9d9ff02519fdb933fe98adbac42996b3 1904292211 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 101242754 ERR2112092 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/002/ERR2112092/ERR2112092.fastq.gz b40662014d1863d723646aecec72da1b 6139469451 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 44839252 ERR2112096 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112096/ERR2112096.fastq.gz a0e40d36ccb46a36986b6396ccbdef39 2801279215 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-013-Tooth ENA PRJEB86458 ERS1906204 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42367542 ERR2112098 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112098/ERR2112098.fastq.gz 405950db4d2dd6088e452d76e574ed6b 2206630410 +Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 16219915 ERR2185282 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/002/ERR2185282/ERR2185282.fastq.gz ae8291e6f7c8dc421db1c5969b9230e3 681016439 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 187683798 ERR2185283 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/003/ERR2185283/ERR2185283.fastq.gz 96d19ed679b9b9a6c5b601fe840f571e 6382804778 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none NextSeq 500 PAIRED Targeted-Capture 861998 ERR2204611 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2204611/ERR2204611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2204611/ERR2204611_2.fastq.gz e97363c161e90082e6eb8fa53a3b8a58;939c0a52c40cec8b8cefdb38851435ba 39871514;41647617 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none NextSeq 500 PAIRED Targeted-Capture 28118462 ERR2204612 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/002/ERR2204612/ERR2204612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/002/ERR2204612/ERR2204612_2.fastq.gz ddfc21cae3d74b9d1c80f06f8115a71b;2b337c73947e90b37b4006bfed0e3fb5 1144496374;1271866282 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CUDG double PfuTurbo Cx Hotstart DNA full-udg NextSeq 500 PAIRED Targeted-Capture 2863375 ERR2204613 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2204613/ERR2204613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2204613/ERR2204613_2.fastq.gz c3c2cd5a50992713d7ed50f5b91dd97b;eb94f2bba3435db0075a3b6fda474505 131797035;136207848 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CUDG double PfuTurbo Cx Hotstart DNA full-udg NextSeq 500 PAIRED Targeted-Capture 96106710 ERR2204614 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204614/ERR2204614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204614/ERR2204614_2.fastq.gz cdcbb32ff04e32423a6d04609a70870e;f010594dfbd557e727f45ed8fd262db3 3851279631;4247569192 +Caruana2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none Illumina HiSeq 2000 PAIRED WGS 994328 ERR2204644 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204644/ERR2204644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204644/ERR2204644_2.fastq.gz 73d0b651d0d03c55e2dddbe75d77dd9d;0c02751f3c5e30e5c43e352edc178964 73031399;75636413 +Caruana2023 2023 10.1007/s13313-023-00936-6 Cueva_de_los_Lagos-Tooth ENA PRJEB23467 ERS2059523 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 179251988 ERR2224078 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR222/008/ERR2224078/ERR2224078.fastq.gz 245587cc316cb175e2eed76a5907d42e 5551553388 +Caruana2023 2023 10.1007/s13313-023-00936-6 Cueva_de_los_Lagos-Tooth ENA PRJEB23467 ERS2059523 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 1164531241 ERR2225784 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR222/004/ERR2225784/ERR2225784.fastq.gz d028912fb20f3a5c731406ad82d2e363 48849563848 +Caruana2023 2023 10.1007/s13313-023-00936-6 Yámana-Tooth ENA PRJEB24629 ERS2160137 unspecified double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 808299942 ERR2270785 fastq_all ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR227/ERR2270785/IPY10.All.fastq.gz 3c32116386822aa24ff2efa67e5d2e94 45202276574 +Caruana2023 2023 10.1007/s13313-023-00936-6 Vác-Mummy-Tissue ENA PRJEB7454 ERS563409 92-A1 double Unknown none Illumina MiSeq PAIRED WGS 20084713 ERR651004 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_2.fastq.gz 3f07d29738185963f380f637b9b93065;0d96c823b7998af0b2165fe46b7e542e 2984512816;3476815638 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_10 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 75660984 ERR966295 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966295/ERR966295.fastq.gz 3f43def0d896afea489f3c5fccea36c3 3930297733 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_11 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 103486178 ERR966296 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966296/ERR966296.fastq.gz b514bc662c122adb6ac42d5acf3b05f0 5330914571 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_13 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 285814147 ERR966298 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966298/ERR966298.fastq.gz dc75bf256f29ebbd70954d7bd7ab2c9a 16162263061 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_6 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 30343646 ERR966310 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966310/ERR966310.fastq.gz 6efffec6ad1d62ed52e2cc3d3c5a7f43 1416897788 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_8 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 87962797 ERR966312 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966312/ERR966312.fastq.gz 5ceca13c5c30374209d7ea44e40de87c 4175899212 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_12 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 107286297 ERR966297 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966297/ERR966297.fastq.gz ec6261bc595a0d84a6606143492f91ec 5571578708 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_15 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 40472562 ERR966300 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966300/ERR966300.fastq.gz 600dc595ac8de4fe232ca1c00c456fec 2368473624 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_17 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 86611474 ERR966302 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966302/ERR966302.fastq.gz 1d2c52049d8c8302e8d45b83c2ce7f4f 5140536631 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_2 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 58022324 ERR966305 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966305/ERR966305.fastq.gz 9350277d1aafa8c43cec850f9e38f0e1 2756025719 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_20 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 136573362 ERR966306 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966306/ERR966306.fastq.gz 98688aecf3d8b0969298d39010220e23 6672345221 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_3 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 49940208 ERR966307 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966307/ERR966307.fastq.gz ff03f2f79b3c528eb1c98af05a3fad62 2423386088 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_4 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 26872695 ERR966308 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966308/ERR966308.fastq.gz 2557624cd4bd5e82ac3e32fc8fa4ed85 1254939750 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_7 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 94822961 ERR966311 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966311/ERR966311.fastq.gz 871dbd8cd245d22c9cdabc166b9118e5 4496790226 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_1 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 49502893 ERR966294 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966294/ERR966294.fastq.gz a808f03060305f2523287cf004fa29fc 2350014565 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_14 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 23206451 ERR966299 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966299/ERR966299.fastq.gz 4139f9e28a3f01f79f1e8fc6163342ef 1361039728 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_16 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 25867706 ERR966301 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966301/ERR966301.fastq.gz 142744b3e9bb59d960fb7959e5cadd24 1522488144 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_18 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 100755898 ERR966303 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966303/ERR966303.fastq.gz 66be0bbef7e8660498b971e19236b005 5975543012 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_19 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 85601752 ERR966304 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966304/ERR966304.fastq.gz 2377b397bc7659809ba3a3b58c9abdda 5175038658 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_5 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 47945651 ERR966309 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966309/ERR966309.fastq.gz d27e80a6d72a4e6c366a4481847639df 2206834714 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_9 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 98694708 ERR966313 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966313/ERR966313.fastq.gz 9cfcbea3b01094ef1ab7b0bd30f84c5a 4681565044 +Caruana2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 11472673 ERR966440 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966440/ERR966440.fastq.gz 28855b18583116ffa22e1f40fd963278 694295918 +Caruana2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libCAGCTA.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 50343799 ERR966426 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966426/ERR966426.fastq.gz 88d4a682975953ad845683f12590a1d3 2888163703 +Caruana2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 3444716 ERR966430 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966430/ERR966430.fastq.gz 075f7fe98e6ec5cde875bf670cb49c47 201382661 +Caruana2023 2023 10.1007/s13313-023-00936-6 Marseille-Tooth ENA PRJEB12163 ERS1020860 OBS107_UDG double AccuPrime Pfx DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 14646710 ERR1193532 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1193532/ERR1193532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1193532/ERR1193532_2.fastq.gz 884a4afc0b75b86bbb323f58b80a041c;9e5e2bca98fdf7b541b490f5955a9ad3 1149013961;1150891719 +Caruana2023 2023 10.1007/s13313-023-00936-6 Marseille-Tooth ENA PRJEB12163 ERS1020860 OBS107 double AccuPrime Pfx DNA full-udg Illumina HiSeq 2000 SINGLE Targeted-Capture 851096 ERR1193537 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1193537/ERR1193537.fastq.gz 864da17f8807ceecad7368caf2c92997 39236628 +Caruana2023 2023 10.1007/s13313-023-00936-6 Barcelona-3031-Tooth ENA PRJEB13664 ERS1124787 Barcelona3031 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 61845279 ERR1368878 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/008/ERR1368878/ERR1368878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/008/ERR1368878/ERR1368878_2.fastq.gz 095af025dc7f11f79502974aa75e7386;4130f9ec25f3df279f8142845961aadb 4422361795;4446780768 +Caruana2023 2023 10.1007/s13313-023-00936-6 SLC-France-Tooth ENA PRJEB24499 ERS2865271 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 203877595 ERR2862150 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/000/ERR2862150/ERR2862150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/000/ERR2862150/ERR2862150_2.fastq.gz a6112d04b304b2375dae6c34033bbc16;acafcc79f3d021db8f3308d9ac935bcf 11059312752;11017819383 +Caruana2023 2023 10.1007/s13313-023-00936-6 SLC-France-Tooth ENA PRJEB24499 ERS2865271 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 221791489 ERR2862151 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/001/ERR2862151/ERR2862151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/001/ERR2862151/ERR2862151_2.fastq.gz f80f8e1d0712e6c0f2a65e79acc67ba3;190cc46629e5eda6fef664d6cb80ee3d 11578595157;11538874156 +Caruana2023 2023 10.1007/s13313-023-00936-6 Karolva-Tooth ENA PRJEB32786 ERS3568107 unspecified single AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Unknown 1140330766 ERR3426230 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR342/000/ERR3426230/ERR3426230.fastq.gz a132e833c23eea070bcaacf5ec544fc4 52616619455 +Caruana2023 2023 10.1007/s13313-023-00936-6 Karolva-Tooth ENA PRJEB32786 ERS3568107 unspecified single AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Unknown 171457258 ERR3426214 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR342/004/ERR3426214/ERR3426214.fastq.gz b8738de2667671d5a178a72cadfee9c0 5737682401 +Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir1595-Tooth ENA PRJEB33848 ERS3635963 Abusir1595t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1752726 ERR4374869 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4374869/ERR4374869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4374869/ERR4374869_2.fastq.gz ae15532ee7d7f77e66e514c3aba99136;7a90231a56f5b797c3b57343139ff922 123648672;117691019 +Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir1671-Tooth ENA PRJEB33848 ERS3636004 Abusir1671t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1782693 ERR4375141 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/001/ERR4375141/ERR4375141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/001/ERR4375141/ERR4375141_2.fastq.gz 5ae99bc0ce03b22aff0d9850f1fde5d3;175c717414a955be4cf03ec799d76262 125757629;120330029 +Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir1607-Tooth ENA PRJEB33848 ERS3636032 Abusir1607t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1586988 ERR4374914 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/004/ERR4374914/ERR4374914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/004/ERR4374914/ERR4374914_2.fastq.gz 1d77a89866d7447f45292a4dec6658a4;55da618b78bfecc4baa4584293980eb2 110209867;107590188 +Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir1655-Tooth ENA PRJEB33848 ERS3635957 Abusir1655t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1945335 ERR4375049 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4375049/ERR4375049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4375049/ERR4375049_2.fastq.gz f22d9971ef57fe9e47700a8c7457a588;688449cd8b334879880e9020e1ec45e9 131666971;121340094 +Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir1668-Tooth ENA PRJEB33848 ERS3635986 Abusir1668b double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1541347 ERR4375136 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/006/ERR4375136/ERR4375136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/006/ERR4375136/ERR4375136_2.fastq.gz effef5dfd1a98d96b9e3fe315f3571f1;998c0eb27a55a32b6fe0c9414bfffa84 100349234;96655523 +Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir1668-Tooth ENA PRJEB33848 ERS3636003 Abusir1668t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1713268 ERR4375137 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/007/ERR4375137/ERR4375137_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/007/ERR4375137/ERR4375137_2.fastq.gz e0c16b10c7223f0f06dc877b967efade;159f44266cd022b79bcba198793b4426 118529958;117196832 +Caruana2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double AccuPrime Pfx DNA none HiSeq X Ten PAIRED WGS 526840783 ERR3828670 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/000/ERR3828670/ERR3828670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/000/ERR3828670/ERR3828670_2.fastq.gz 8bb30abf98faae0b4e32879e73d0fddb;2c14f5f656437db800c7d440b43118ec 32454725484;34339312668 +Caruana2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double AccuPrime Pfx DNA none HiSeq X Ten PAIRED WGS 28036224 ERR6504159 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR650/009/ERR6504159/ERR6504159.fastq.gz 17a0ca6e5e6bf71c9baf67a3469c9667 1215957980 +Caruana2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double AccuPrime Pfx DNA none HiSeq X Ten SINGLE WGS 26132707 ERR3828725 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/005/ERR3828725/ERR3828725.fastq.gz bdbd5c57583dd407cfb4fd238f65a64e 1141752081 +Caruana2023 2023 10.1007/s13313-023-00936-6 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 191158993 ERR3841646 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/006/ERR3841646/ERR3841646.fastq.gz ad40e5810f4cade26206881f064d781a 8028301308 +Caruana2023 2023 10.1007/s13313-023-00936-6 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 7930905 ERR3841647 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/007/ERR3841647/ERR3841647.fastq.gz 59264a85b271b4cc44ece2e409ed6257 329376589 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chincha-UC12-12-Tooth ENA PRJEB37726 ERS4421181 SC79-L1101 single AmpliTaq Gold DNA half-udg HiSeq X Ten PAIRED WGS 285113997 ERR4017942 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_2.fastq.gz 818b384816f44c7b1879294fd37bd299;0d2e65636f7a46edf753df2e68dd8a5b 18195979831;21200990407 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chincha-UC12-24-Tooth ENA PRJEB37726 ERS4421183 SC79-L1096 single AmpliTaq Gold DNA half-udg HiSeq X Ten PAIRED WGS 283637918 ERR4017944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_2.fastq.gz 8c7a2105a5d34c1160ea68cc6c459a7f;9365adbf8f8538a7a63631f1b3e56bda 18392091676;21164798356 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chincha-UC8-8168-Tooth ENA PRJEB37726 ERS4421185 SC79-L1099 single AmpliTaq Gold DNA half-udg HiSeq X Ten PAIRED WGS 255728754 ERR4017946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_2.fastq.gz c931ada4db74d678bc82e71dad544556;e648c62aaad77dd722f482cfd6f68d0e 16428825487;18295596682 +Caruana2023 2023 10.1007/s13313-023-00936-6 El_Yaral-Bone SRA PRJNA244165 SRS592075 sample_64 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 50916301 SRR1238559 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_2.fastq.gz f62e1e3dd90fb7fd0324e920f15ab8bd;b635c5da56ca1b3dd185678c9f9df508 3713855268;3742735134 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chiribaya_Alta-Bone SRA PRJNA244165 SRS591994 sample_54 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 80406577 SRR1238558 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_2.fastq.gz 72ade0f81eed372eae9fb927a484aa44;5f1fa7e6729773322b52903151f03192 5821824690;5839496681 +Caruana2023 2023 10.1007/s13313-023-00936-6 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double KAPA HiFi HotStart DNA none Illumina HiSeq 2500 PAIRED WGS 12285216 SRR1298750 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_2.fastq.gz 0a15035340b0c7035d3bb909880b7b0e;0922a0583a8f80ec1508ad759179176f 986232779;962732023 +Caruana2023 2023 10.1007/s13313-023-00936-6 Peru-NA42-Bone SRA PRJNA246597 SRS620295 NA42 double KAPA HiFi HotStart DNA full-udg Illumina HiSeq 2500 PAIRED WGS 8330163 SRR1298752 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/002/SRR1298752/SRR1298752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/002/SRR1298752/SRR1298752_2.fastq.gz 11a8d69baa09d592a540b098a730f291;f2b6407d15e52c48950109f9a0433450 682701697;664051670 +Caruana2023 2023 10.1007/s13313-023-00936-6 Peru-NA42-Bone SRA PRJNA246597 SRS620295 NA42 double KAPA HiFi HotStart DNA full-udg Illumina HiSeq 2500 PAIRED WGS 18730377 SRR1314214 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_2.fastq.gz d251b55d54eba0b090678c137b7db1a2;3f080f16f1ad832a0a19b532e0f3461f 1571141325;1542055871 +Caruana2023 2023 10.1007/s13313-023-00936-6 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double KAPA HiFi HotStart DNA none Illumina HiSeq 2500 PAIRED WGS 22453782 SRR1314212 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_2.fastq.gz 2d98d878adca254a59847145e4714b3e;25bf14d82da531b60a3ca430b90877f4 1871792459;1847705551 +Caruana2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 5673426 SRR5169886 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_2.fastq.gz 990dd87c0889dfb683b63a81547e18ff;9920fbe01c61b92ba8b7c655dda5e6ea 371088934;370621153 +Caruana2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 SINGLE Unknown 11699427 SRR5169887 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/007/SRR5169887/SRR5169887.fastq.gz 0554a6c3520470fed11f5859dcf6ff60 654473091 +Caruana2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_BAM double Platinum Taq DNA-Polymerase High Fidelity none NextSeq 500 SINGLE Unknown 850652 SRR5182352 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/002/SRR5182352/SRR5182352.fastq.gz cacc950730273faf12248a8cf993d847 22154218 +Caruana2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 SINGLE Unknown 5047103 SRR5169885 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/005/SRR5169885/SRR5169885.fastq.gz e738d5fc9710f7d66bbd52398aef88ee 303750743 +Caruana2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 14110398 SRR5169888 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_2.fastq.gz dbb0c55e9c1da142301d4bdca8dde663;d17973f6ff1784e11a00e13cb9963253 918308388;927811702 +Caruana2023 2023 10.1007/s13313-023-00936-6 Gniezno-Tooth SRA PRJNA354503 SRS1815300 PCA0162 single AmpliTaq Gold DNA none Illumina Genome Analyzer II SINGLE WGS 6594634 SRR5047069 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/009/SRR5047069/SRR5047069.fastq.gz 6df299e1a545cb4a7af8bccc6645696f 441544945 +Caruana2023 2023 10.1007/s13313-023-00936-6 Punta_Candelero-Tooth SRA PRJNA557308 SRS5212084 PC-119-WGE double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 13553081 SRR9898505 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR989/005/SRR9898505/SRR9898505.fastq.gz 5337cb2a6102a497dda11a6381238cb6 567421190 From 3ae920ce511537f907a578105ffb240d329152bb Mon Sep 17 00:00:00 2001 From: DianaSpurite <112383244+DianaSpurite@users.noreply.github.com> Date: Thu, 28 Sep 2023 14:46:03 +0200 Subject: [PATCH 03/16] Update CHANGELOG.md added Caruana 2023 --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 233555a17..68bb6a2d7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -19,6 +19,7 @@ and this project follows to [Calendar Versioning](https://calver.org/). - Neumann 2023 10.1553/archaeologia107 (added by @DianaSpurite) - Bonczarowska 2023 10.1098/rspb.2023.0622 (added by @DianaSpurite) - Long 2023 10.1371/journal.ppat.1011538 (added by @DianaSpurite) +- Caruana 2023 10.1007/s13313-023-00936-6 (added by @DianaSpurite) #### Ancient Metagenome: Environmental From dcc8fda4590b2245caf618ff1d2da69d8c30310f Mon Sep 17 00:00:00 2001 From: DianaSpurite <112383244+DianaSpurite@users.noreply.github.com> Date: Thu, 28 Sep 2023 15:01:12 +0200 Subject: [PATCH 04/16] Update ancientsinglegenome-hostassociated_libraries.tsv Correcting library_Polymerase --- ...tsinglegenome-hostassociated_libraries.tsv | 40 +++++++++---------- 1 file changed, 20 insertions(+), 20 deletions(-) diff --git a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv index aaa466427..ddeb0e063 100644 --- a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv +++ b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv @@ -2808,26 +2808,26 @@ Caruana2023 2023 10.1007/s13313-023-00936-6 Cueva_de_los_Lagos-Tooth ENA PRJEB23 Caruana2023 2023 10.1007/s13313-023-00936-6 Cueva_de_los_Lagos-Tooth ENA PRJEB23467 ERS2059523 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 1164531241 ERR2225784 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR222/004/ERR2225784/ERR2225784.fastq.gz d028912fb20f3a5c731406ad82d2e363 48849563848 Caruana2023 2023 10.1007/s13313-023-00936-6 Yámana-Tooth ENA PRJEB24629 ERS2160137 unspecified double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 808299942 ERR2270785 fastq_all ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR227/ERR2270785/IPY10.All.fastq.gz 3c32116386822aa24ff2efa67e5d2e94 45202276574 Caruana2023 2023 10.1007/s13313-023-00936-6 Vác-Mummy-Tissue ENA PRJEB7454 ERS563409 92-A1 double Unknown none Illumina MiSeq PAIRED WGS 20084713 ERR651004 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_2.fastq.gz 3f07d29738185963f380f637b9b93065;0d96c823b7998af0b2165fe46b7e542e 2984512816;3476815638 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_10 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 75660984 ERR966295 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966295/ERR966295.fastq.gz 3f43def0d896afea489f3c5fccea36c3 3930297733 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_11 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 103486178 ERR966296 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966296/ERR966296.fastq.gz b514bc662c122adb6ac42d5acf3b05f0 5330914571 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_13 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 285814147 ERR966298 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966298/ERR966298.fastq.gz dc75bf256f29ebbd70954d7bd7ab2c9a 16162263061 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_6 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 30343646 ERR966310 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966310/ERR966310.fastq.gz 6efffec6ad1d62ed52e2cc3d3c5a7f43 1416897788 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_8 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 87962797 ERR966312 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966312/ERR966312.fastq.gz 5ceca13c5c30374209d7ea44e40de87c 4175899212 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_12 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 107286297 ERR966297 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966297/ERR966297.fastq.gz ec6261bc595a0d84a6606143492f91ec 5571578708 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_15 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 40472562 ERR966300 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966300/ERR966300.fastq.gz 600dc595ac8de4fe232ca1c00c456fec 2368473624 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_17 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 86611474 ERR966302 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966302/ERR966302.fastq.gz 1d2c52049d8c8302e8d45b83c2ce7f4f 5140536631 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_2 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 58022324 ERR966305 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966305/ERR966305.fastq.gz 9350277d1aafa8c43cec850f9e38f0e1 2756025719 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_20 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 136573362 ERR966306 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966306/ERR966306.fastq.gz 98688aecf3d8b0969298d39010220e23 6672345221 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_3 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 49940208 ERR966307 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966307/ERR966307.fastq.gz ff03f2f79b3c528eb1c98af05a3fad62 2423386088 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_4 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 26872695 ERR966308 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966308/ERR966308.fastq.gz 2557624cd4bd5e82ac3e32fc8fa4ed85 1254939750 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_7 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 94822961 ERR966311 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966311/ERR966311.fastq.gz 871dbd8cd245d22c9cdabc166b9118e5 4496790226 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_1 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 49502893 ERR966294 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966294/ERR966294.fastq.gz a808f03060305f2523287cf004fa29fc 2350014565 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_14 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 23206451 ERR966299 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966299/ERR966299.fastq.gz 4139f9e28a3f01f79f1e8fc6163342ef 1361039728 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_16 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 25867706 ERR966301 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966301/ERR966301.fastq.gz 142744b3e9bb59d960fb7959e5cadd24 1522488144 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_18 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 100755898 ERR966303 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966303/ERR966303.fastq.gz 66be0bbef7e8660498b971e19236b005 5975543012 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_19 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 85601752 ERR966304 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966304/ERR966304.fastq.gz 2377b397bc7659809ba3a3b58c9abdda 5175038658 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_5 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 47945651 ERR966309 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966309/ERR966309.fastq.gz d27e80a6d72a4e6c366a4481847639df 2206834714 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_9 double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 98694708 ERR966313 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966313/ERR966313.fastq.gz 9cfcbea3b01094ef1ab7b0bd30f84c5a 4681565044 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_10 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 75660984 ERR966295 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966295/ERR966295.fastq.gz 3f43def0d896afea489f3c5fccea36c3 3930297733 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_11 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 103486178 ERR966296 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966296/ERR966296.fastq.gz b514bc662c122adb6ac42d5acf3b05f0 5330914571 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_13 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 285814147 ERR966298 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966298/ERR966298.fastq.gz dc75bf256f29ebbd70954d7bd7ab2c9a 16162263061 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_6 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 30343646 ERR966310 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966310/ERR966310.fastq.gz 6efffec6ad1d62ed52e2cc3d3c5a7f43 1416897788 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_8 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 87962797 ERR966312 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966312/ERR966312.fastq.gz 5ceca13c5c30374209d7ea44e40de87c 4175899212 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_12 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 107286297 ERR966297 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966297/ERR966297.fastq.gz ec6261bc595a0d84a6606143492f91ec 5571578708 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_15 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 40472562 ERR966300 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966300/ERR966300.fastq.gz 600dc595ac8de4fe232ca1c00c456fec 2368473624 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_17 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 86611474 ERR966302 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966302/ERR966302.fastq.gz 1d2c52049d8c8302e8d45b83c2ce7f4f 5140536631 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_2 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 58022324 ERR966305 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966305/ERR966305.fastq.gz 9350277d1aafa8c43cec850f9e38f0e1 2756025719 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_20 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 136573362 ERR966306 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966306/ERR966306.fastq.gz 98688aecf3d8b0969298d39010220e23 6672345221 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_3 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 49940208 ERR966307 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966307/ERR966307.fastq.gz ff03f2f79b3c528eb1c98af05a3fad62 2423386088 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_4 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 26872695 ERR966308 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966308/ERR966308.fastq.gz 2557624cd4bd5e82ac3e32fc8fa4ed85 1254939750 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_7 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 94822961 ERR966311 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966311/ERR966311.fastq.gz 871dbd8cd245d22c9cdabc166b9118e5 4496790226 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_1 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 49502893 ERR966294 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966294/ERR966294.fastq.gz a808f03060305f2523287cf004fa29fc 2350014565 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_14 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 23206451 ERR966299 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966299/ERR966299.fastq.gz 4139f9e28a3f01f79f1e8fc6163342ef 1361039728 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_16 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 25867706 ERR966301 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966301/ERR966301.fastq.gz 142744b3e9bb59d960fb7959e5cadd24 1522488144 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_18 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 100755898 ERR966303 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966303/ERR966303.fastq.gz 66be0bbef7e8660498b971e19236b005 5975543012 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_19 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 85601752 ERR966304 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966304/ERR966304.fastq.gz 2377b397bc7659809ba3a3b58c9abdda 5175038658 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_5 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 47945651 ERR966309 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966309/ERR966309.fastq.gz d27e80a6d72a4e6c366a4481847639df 2206834714 +Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_9 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 98694708 ERR966313 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966313/ERR966313.fastq.gz 9cfcbea3b01094ef1ab7b0bd30f84c5a 4681565044 Caruana2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 11472673 ERR966440 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966440/ERR966440.fastq.gz 28855b18583116ffa22e1f40fd963278 694295918 Caruana2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libCAGCTA.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 50343799 ERR966426 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966426/ERR966426.fastq.gz 88d4a682975953ad845683f12590a1d3 2888163703 Caruana2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 3444716 ERR966430 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966430/ERR966430.fastq.gz 075f7fe98e6ec5cde875bf670cb49c47 201382661 From ee2cdb391a52a70299a88ac73176d338bb135271 Mon Sep 17 00:00:00 2001 From: DianaSpurite <112383244+DianaSpurite@users.noreply.github.com> Date: Thu, 28 Sep 2023 19:46:32 +0200 Subject: [PATCH 05/16] Update CHANGELOG.md Adding the correct name of the author --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 68bb6a2d7..ea7fe701c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -19,7 +19,7 @@ and this project follows to [Calendar Versioning](https://calver.org/). - Neumann 2023 10.1553/archaeologia107 (added by @DianaSpurite) - Bonczarowska 2023 10.1098/rspb.2023.0622 (added by @DianaSpurite) - Long 2023 10.1371/journal.ppat.1011538 (added by @DianaSpurite) -- Caruana 2023 10.1007/s13313-023-00936-6 (added by @DianaSpurite) +- Hodgkins 2023 10.1007/s13313-023-00936-6 (added by @DianaSpurite) #### Ancient Metagenome: Environmental From a09ecbc0bc1fd0ca438a98ad550350a3fd2ad73f Mon Sep 17 00:00:00 2001 From: DianaSpurite <112383244+DianaSpurite@users.noreply.github.com> Date: Thu, 28 Sep 2023 20:24:19 +0200 Subject: [PATCH 06/16] Update ancientsinglegenome-hostassociated_libraries.tsv - added the correct author's name - corrected the last polymerase - added under-strokes in the library names for Deir-Rifeh-KNIII-Tooth and Deir-Rifeh-KNII-Tooth sample libraries --- ...tsinglegenome-hostassociated_libraries.tsv | 248 +++++++++--------- 1 file changed, 124 insertions(+), 124 deletions(-) diff --git a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv index ddeb0e063..ad9570513 100644 --- a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv +++ b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv @@ -2741,127 +2741,127 @@ Parker2023 2023 10.1371/journal.ppat.1011404 KRA032 ENA PRJEB61096 ERS14884864 K Parker2023 2023 10.1371/journal.ppat.1011404 KRA032 ENA PRJEB61096 ERS14884864 KRA032.A0103 single AmpliTaq Gold DNA none Illumina HiSeq 4000 PAIRED Targeted-Capture 34240226 ERR11202937 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/037/ERR11202937/ERR11202937_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/037/ERR11202937/ERR11202937_2.fastq.gz 360f8370041b6558afd149593a6a8595;da02c63d5f55963d7ae9c6ab6ea15402 553924381;611677182 Long2023 2023 10.1371/journal.ppat.1011538 Sante Brancorsini SRA PRJNA966239 SRS17532534 LMN01_S415 single AccuPrime Pfx DNA none Illumina HiSeq 1500 PAIRED WGS 26874306 SRR24420453 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR244/053/SRR24420453/SRR24420453_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR244/053/SRR24420453/SRR24420453_2.fastq.gz d7b8d3754d7633e119f0a2769bd821a1;917b0e2ee6ad1bf51904061e7ab8d597 673258837;673103704 Long2023 2023 10.1371/journal.ppat.1011538 Sante Brancorsini SRA PRJNA966239 SRS17532534 LMN01_S301 single AccuPrime Pfx DNA none Illumina HiSeq 1500 PAIRED WGS 1731099 SRR24420454 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR244/054/SRR24420454/SRR24420454_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR244/054/SRR24420454/SRR24420454_2.fastq.gz 7d67f4001c48a53702e280edb68ddde1;e87eeebc190579aa3323845513e5128b 45760293;45221147 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046399 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046399/DRR046399.fastq.gz 59098fe5c2d339f49a29f62bb581df0d 3031799168 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046405 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046405/DRR046405.fastq.gz 73f76a8c76f4548200740792cec3e80f 1480013579 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R1 double Unknown none Illumina MiSeq PAIRED WGS 135268 DRR046406 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046406/DRR046406.fastq.gz 37c506c70b5f4384eac3daf49bbf1806 13168706 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R2 double Unknown none Illumina MiSeq PAIRED WGS 135268 DRR046407 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046407/DRR046407.fastq.gz b08daf33376d9b8769638c68ef9e1624 14586872 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R1 double Unknown none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046408 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046408/DRR046408.fastq.gz 792187bcc4f5a0837c33bfa9bcd45ff7 25135887359 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R2 double Unknown none Illumina MiSeq PAIRED WGS 77847 DRR046411 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046411/DRR046411.fastq.gz a185e6ef0736d5798b73d57eade9aefe 8570877 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046402 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046402/DRR046402.fastq.gz 251cfd9c110f0c258b92986757c5e08e 2236884763 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046398 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046398/DRR046398.fastq.gz dd07acfd074d7ab3de3a737a11a02bbf 2923006982 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046400 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046400/DRR046400.fastq.gz 9baaa4283c72e838b97cec348101b1e6 2739068719 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046401 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046401/DRR046401.fastq.gz 2c7dd699fe0ed1044b150de785c8ac16 2864519935 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046403 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046403/DRR046403.fastq.gz 05f383ec42a1d9c5d73e15c91b867904 2312625893 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046404 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046404/DRR046404.fastq.gz 4589fb0baa96aee3f653d2e6de17e5fd 1438715827 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R2 double Unknown none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046409 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046409/DRR046409.fastq.gz c66e84985b2b86e506713a055303f3fc 25985687100 -Caruana2023 2023 10.1007/s13313-023-00936-7 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R1 double Unknown none Illumina MiSeq PAIRED WGS 77847 DRR046410 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046410/DRR046410.fastq.gz 374b027632e96e155944a5ffff376fc3 7809572 -Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 SINGLE Targeted-Capture 163 ERR1937826 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/006/ERR1937826/ERR1937826.fastq.gz 4028690b02008c7d6934e4a399a3c324 8498 -Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2 paired fastq double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 PAIRED Targeted-Capture 76673447 ERR1937833 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_2.fastq.gz 9f5d8938ecfab81ff4b06cf5b85ecd84;9b0a31ebf902f6749b3d2bb66fe98583 3888369913;4105585278 -Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 SINGLE Targeted-Capture 5422 ERR1937825 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937825/ERR1937825.fastq.gz a0b9ad0f50ea8d3e84968e1a6b48a34f 196674 -Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE WGS 21 ERR1937828 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/008/ERR1937828/ERR1937828.fastq.gz 0853f9b447d7b2d3ea74c10e8e7b698a 882 -Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2 paired fastq double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 PAIRED Targeted-Capture 52435610 ERR1937834 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_2.fastq.gz 8bdc8dc708983ac9334f59ff5d3bca09;9b02c90be8f45c0a9bdcb138459bdd64 2172525415;2376886625 -Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE WGS 20404 ERR1937827 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/007/ERR1937827/ERR1937827.fastq.gz 6413c8cb99df1ce1762913cadf28329c 537498 -Caruana2023 2023 10.1007/s13313-023-00936-7 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 2 paired fastq double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 44375613 ERR1937835 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_2.fastq.gz 227dbeb7889d5b4e2f5188c56d079576;d0d9ee382a5ad825a4431ebfad77ba9f 2421609326;2479467479 -Caruana2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 807 ERR1942918 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1942918/ERR1942918.fastq.gz 8c002eac0175550cd4e5fd966261b50c 26359 -Caruana2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 318125040 ERR2112574 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112574/ERR2112574.fastq.gz d29e8511b8c860889920240560f28963 11592228429 -Caruana2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 320155752 ERR2112575 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112575/ERR2112575.fastq.gz 1c3931ef9c7b3198fd89eed4c4af79aa 11523747356 -Caruana2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 320577112 ERR2112576 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112576/ERR2112576.fastq.gz c01e8e624b5e7e542a6a53060eda2963 11612997118 -Caruana2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 286756923 ERR2112577 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112577/ERR2112577.fastq.gz 1b43fd6bdd9e0f372e0370426e502ae9 10175356811 -Caruana2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 165092355 ERR2112578 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112578/ERR2112578.fastq.gz a546c8d02e34ab7ba9bf9b9b70edc110 6042098938 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-004-Tooth ENA PRJEB86458 ERS1906198 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 32788454 ERR2111944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2111944/ERR2111944.fastq.gz 2268b27c14ddaa9fe8ba1994dca180b7 1476338852 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 83657790 ERR2111947 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2111947/ERR2111947.fastq.gz 28d80ed137a4f2749c8df338f1396296 4616384352 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 84678681 ERR2111948 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2111948/ERR2111948.fastq.gz 2670f6ee30cdb2e9cf25194b1d00352f 4487414231 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 41600057 ERR2111950 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/000/ERR2111950/ERR2111950.fastq.gz 7d2f61ffbc3704b514b1ad49c83cc2ea 2283826200 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42454995 ERR2111951 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2111951/ERR2111951.fastq.gz 166f95e2b9def23d98644c5c37f39841 2239935032 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 46432244 ERR2112075 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112075/ERR2112075.fastq.gz c3058a6ab2a74162e841055c2c9871e7 3315636400 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 41968696 ERR2112076 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112076/ERR2112076.fastq.gz c1f0637d92139b565497ff8eb58dc708 3024212774 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42694502 ERR2112077 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112077/ERR2112077.fastq.gz 527ea4fcb4e247423862d8d65850297f 2971810358 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 56519202 ERR2112078 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112078/ERR2112078.fastq.gz 746c40aa7f5364b424a8a010625ab555 4015798460 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 103034192 ERR2112082 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/002/ERR2112082/ERR2112082.fastq.gz b494900e3eb4faa8fc519510c3d18044 4339155003 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 48006465 ERR2112095 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112095/ERR2112095.fastq.gz aa23291e1ffa281f02cb00424cabca88 2904018843 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 46090647 ERR2112097 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112097/ERR2112097.fastq.gz a3bc3849f6ae72755564f0639badf10b 2763637774 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 34599863 ERR2111945 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2111945/ERR2111945.fastq.gz be2c0610c72a60232d3d2ceacfc45c15 1531332605 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 43607924 ERR2111949 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/009/ERR2111949/ERR2111949.fastq.gz c12312b0e05b7364e4ae34ff58dbed2b 2330733778 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 48025167 ERR2112074 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112074/ERR2112074.fastq.gz 56b44ec8a3f4a84f0e6e52f23a45244f 2650703816 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 51462140 ERR2112079 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/009/ERR2112079/ERR2112079.fastq.gz cb086c299d3dd88bea8b8497712d2f23 3674875735 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 52674925 ERR2112080 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/000/ERR2112080/ERR2112080.fastq.gz 444cfc9e7f1312e42f812bf1e0437f8b 3656995820 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 247085213 ERR2112083 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/003/ERR2112083/ERR2112083.fastq.gz 5e871b7f274fd4045af8ca7a99ba6fb1 12125066589 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 156625959 ERR2112084 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112084/ERR2112084.fastq.gz 1f89e2c52b4811dfcc047ed1ee608b7e 7764413478 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 95745866 ERR2112093 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/003/ERR2112093/ERR2112093.fastq.gz 7bd19b4ef5a6ac548a04fe4e67afc7cc 6033829981 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 97073096 ERR2112094 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112094/ERR2112094.fastq.gz 3d7cae0f6e17f95675644668c8b58c43 5838900641 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 30451552 ERR2185281 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/001/ERR2185281/ERR2185281.fastq.gz ab6526f8ff7e7706029265c64df6ffac 1188674769 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 28674836 ERR2185284 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/004/ERR2185284/ERR2185284.fastq.gz 25cd96b8767c4435b1fa287ffa9a57d9 1206388101 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 86740492 ERR2111946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2111946/ERR2111946.fastq.gz 810b089d785ebd1edbad3a41226ce5ad 4637501739 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 50136895 ERR2112081 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2112081/ERR2112081.fastq.gz 154863c74e9827eb9fee2b3a630ac19e 2230636146 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 37810056 ERR2112091 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2112091/ERR2112091.fastq.gz 9d9ff02519fdb933fe98adbac42996b3 1904292211 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 101242754 ERR2112092 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/002/ERR2112092/ERR2112092.fastq.gz b40662014d1863d723646aecec72da1b 6139469451 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 44839252 ERR2112096 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112096/ERR2112096.fastq.gz a0e40d36ccb46a36986b6396ccbdef39 2801279215 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-013-Tooth ENA PRJEB86458 ERS1906204 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42367542 ERR2112098 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112098/ERR2112098.fastq.gz 405950db4d2dd6088e452d76e574ed6b 2206630410 -Caruana2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 16219915 ERR2185282 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/002/ERR2185282/ERR2185282.fastq.gz ae8291e6f7c8dc421db1c5969b9230e3 681016439 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 187683798 ERR2185283 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/003/ERR2185283/ERR2185283.fastq.gz 96d19ed679b9b9a6c5b601fe840f571e 6382804778 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none NextSeq 500 PAIRED Targeted-Capture 861998 ERR2204611 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2204611/ERR2204611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2204611/ERR2204611_2.fastq.gz e97363c161e90082e6eb8fa53a3b8a58;939c0a52c40cec8b8cefdb38851435ba 39871514;41647617 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none NextSeq 500 PAIRED Targeted-Capture 28118462 ERR2204612 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/002/ERR2204612/ERR2204612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/002/ERR2204612/ERR2204612_2.fastq.gz ddfc21cae3d74b9d1c80f06f8115a71b;2b337c73947e90b37b4006bfed0e3fb5 1144496374;1271866282 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CUDG double PfuTurbo Cx Hotstart DNA full-udg NextSeq 500 PAIRED Targeted-Capture 2863375 ERR2204613 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2204613/ERR2204613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2204613/ERR2204613_2.fastq.gz c3c2cd5a50992713d7ed50f5b91dd97b;eb94f2bba3435db0075a3b6fda474505 131797035;136207848 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CUDG double PfuTurbo Cx Hotstart DNA full-udg NextSeq 500 PAIRED Targeted-Capture 96106710 ERR2204614 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204614/ERR2204614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204614/ERR2204614_2.fastq.gz cdcbb32ff04e32423a6d04609a70870e;f010594dfbd557e727f45ed8fd262db3 3851279631;4247569192 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none Illumina HiSeq 2000 PAIRED WGS 994328 ERR2204644 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204644/ERR2204644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204644/ERR2204644_2.fastq.gz 73d0b651d0d03c55e2dddbe75d77dd9d;0c02751f3c5e30e5c43e352edc178964 73031399;75636413 -Caruana2023 2023 10.1007/s13313-023-00936-6 Cueva_de_los_Lagos-Tooth ENA PRJEB23467 ERS2059523 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 179251988 ERR2224078 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR222/008/ERR2224078/ERR2224078.fastq.gz 245587cc316cb175e2eed76a5907d42e 5551553388 -Caruana2023 2023 10.1007/s13313-023-00936-6 Cueva_de_los_Lagos-Tooth ENA PRJEB23467 ERS2059523 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 1164531241 ERR2225784 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR222/004/ERR2225784/ERR2225784.fastq.gz d028912fb20f3a5c731406ad82d2e363 48849563848 -Caruana2023 2023 10.1007/s13313-023-00936-6 Yámana-Tooth ENA PRJEB24629 ERS2160137 unspecified double AmpliTaq Gold none Illumina HiSeq 2000 SINGLE WGS 808299942 ERR2270785 fastq_all ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR227/ERR2270785/IPY10.All.fastq.gz 3c32116386822aa24ff2efa67e5d2e94 45202276574 -Caruana2023 2023 10.1007/s13313-023-00936-6 Vác-Mummy-Tissue ENA PRJEB7454 ERS563409 92-A1 double Unknown none Illumina MiSeq PAIRED WGS 20084713 ERR651004 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_2.fastq.gz 3f07d29738185963f380f637b9b93065;0d96c823b7998af0b2165fe46b7e542e 2984512816;3476815638 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_10 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 75660984 ERR966295 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966295/ERR966295.fastq.gz 3f43def0d896afea489f3c5fccea36c3 3930297733 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_11 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 103486178 ERR966296 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966296/ERR966296.fastq.gz b514bc662c122adb6ac42d5acf3b05f0 5330914571 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_13 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 285814147 ERR966298 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966298/ERR966298.fastq.gz dc75bf256f29ebbd70954d7bd7ab2c9a 16162263061 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_6 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 30343646 ERR966310 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966310/ERR966310.fastq.gz 6efffec6ad1d62ed52e2cc3d3c5a7f43 1416897788 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_8 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 87962797 ERR966312 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966312/ERR966312.fastq.gz 5ceca13c5c30374209d7ea44e40de87c 4175899212 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_12 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 107286297 ERR966297 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966297/ERR966297.fastq.gz ec6261bc595a0d84a6606143492f91ec 5571578708 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_15 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 40472562 ERR966300 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966300/ERR966300.fastq.gz 600dc595ac8de4fe232ca1c00c456fec 2368473624 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_17 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 86611474 ERR966302 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966302/ERR966302.fastq.gz 1d2c52049d8c8302e8d45b83c2ce7f4f 5140536631 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_2 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 58022324 ERR966305 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966305/ERR966305.fastq.gz 9350277d1aafa8c43cec850f9e38f0e1 2756025719 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_20 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 136573362 ERR966306 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966306/ERR966306.fastq.gz 98688aecf3d8b0969298d39010220e23 6672345221 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_3 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 49940208 ERR966307 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966307/ERR966307.fastq.gz ff03f2f79b3c528eb1c98af05a3fad62 2423386088 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_4 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 26872695 ERR966308 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966308/ERR966308.fastq.gz 2557624cd4bd5e82ac3e32fc8fa4ed85 1254939750 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_7 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 94822961 ERR966311 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966311/ERR966311.fastq.gz 871dbd8cd245d22c9cdabc166b9118e5 4496790226 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_1 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 49502893 ERR966294 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966294/ERR966294.fastq.gz a808f03060305f2523287cf004fa29fc 2350014565 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_14 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 23206451 ERR966299 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966299/ERR966299.fastq.gz 4139f9e28a3f01f79f1e8fc6163342ef 1361039728 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_16 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 25867706 ERR966301 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966301/ERR966301.fastq.gz 142744b3e9bb59d960fb7959e5cadd24 1522488144 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_18 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 100755898 ERR966303 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966303/ERR966303.fastq.gz 66be0bbef7e8660498b971e19236b005 5975543012 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_19 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 85601752 ERR966304 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966304/ERR966304.fastq.gz 2377b397bc7659809ba3a3b58c9abdda 5175038658 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_5 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 47945651 ERR966309 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966309/ERR966309.fastq.gz d27e80a6d72a4e6c366a4481847639df 2206834714 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_9 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 98694708 ERR966313 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966313/ERR966313.fastq.gz 9cfcbea3b01094ef1ab7b0bd30f84c5a 4681565044 -Caruana2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 11472673 ERR966440 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966440/ERR966440.fastq.gz 28855b18583116ffa22e1f40fd963278 694295918 -Caruana2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libCAGCTA.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 50343799 ERR966426 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966426/ERR966426.fastq.gz 88d4a682975953ad845683f12590a1d3 2888163703 -Caruana2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 3444716 ERR966430 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966430/ERR966430.fastq.gz 075f7fe98e6ec5cde875bf670cb49c47 201382661 -Caruana2023 2023 10.1007/s13313-023-00936-6 Marseille-Tooth ENA PRJEB12163 ERS1020860 OBS107_UDG double AccuPrime Pfx DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 14646710 ERR1193532 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1193532/ERR1193532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1193532/ERR1193532_2.fastq.gz 884a4afc0b75b86bbb323f58b80a041c;9e5e2bca98fdf7b541b490f5955a9ad3 1149013961;1150891719 -Caruana2023 2023 10.1007/s13313-023-00936-6 Marseille-Tooth ENA PRJEB12163 ERS1020860 OBS107 double AccuPrime Pfx DNA full-udg Illumina HiSeq 2000 SINGLE Targeted-Capture 851096 ERR1193537 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1193537/ERR1193537.fastq.gz 864da17f8807ceecad7368caf2c92997 39236628 -Caruana2023 2023 10.1007/s13313-023-00936-6 Barcelona-3031-Tooth ENA PRJEB13664 ERS1124787 Barcelona3031 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 61845279 ERR1368878 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/008/ERR1368878/ERR1368878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/008/ERR1368878/ERR1368878_2.fastq.gz 095af025dc7f11f79502974aa75e7386;4130f9ec25f3df279f8142845961aadb 4422361795;4446780768 -Caruana2023 2023 10.1007/s13313-023-00936-6 SLC-France-Tooth ENA PRJEB24499 ERS2865271 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 203877595 ERR2862150 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/000/ERR2862150/ERR2862150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/000/ERR2862150/ERR2862150_2.fastq.gz a6112d04b304b2375dae6c34033bbc16;acafcc79f3d021db8f3308d9ac935bcf 11059312752;11017819383 -Caruana2023 2023 10.1007/s13313-023-00936-6 SLC-France-Tooth ENA PRJEB24499 ERS2865271 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 221791489 ERR2862151 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/001/ERR2862151/ERR2862151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/001/ERR2862151/ERR2862151_2.fastq.gz f80f8e1d0712e6c0f2a65e79acc67ba3;190cc46629e5eda6fef664d6cb80ee3d 11578595157;11538874156 -Caruana2023 2023 10.1007/s13313-023-00936-6 Karolva-Tooth ENA PRJEB32786 ERS3568107 unspecified single AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Unknown 1140330766 ERR3426230 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR342/000/ERR3426230/ERR3426230.fastq.gz a132e833c23eea070bcaacf5ec544fc4 52616619455 -Caruana2023 2023 10.1007/s13313-023-00936-6 Karolva-Tooth ENA PRJEB32786 ERS3568107 unspecified single AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Unknown 171457258 ERR3426214 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR342/004/ERR3426214/ERR3426214.fastq.gz b8738de2667671d5a178a72cadfee9c0 5737682401 -Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir1595-Tooth ENA PRJEB33848 ERS3635963 Abusir1595t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1752726 ERR4374869 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4374869/ERR4374869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4374869/ERR4374869_2.fastq.gz ae15532ee7d7f77e66e514c3aba99136;7a90231a56f5b797c3b57343139ff922 123648672;117691019 -Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir1671-Tooth ENA PRJEB33848 ERS3636004 Abusir1671t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1782693 ERR4375141 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/001/ERR4375141/ERR4375141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/001/ERR4375141/ERR4375141_2.fastq.gz 5ae99bc0ce03b22aff0d9850f1fde5d3;175c717414a955be4cf03ec799d76262 125757629;120330029 -Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir1607-Tooth ENA PRJEB33848 ERS3636032 Abusir1607t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1586988 ERR4374914 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/004/ERR4374914/ERR4374914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/004/ERR4374914/ERR4374914_2.fastq.gz 1d77a89866d7447f45292a4dec6658a4;55da618b78bfecc4baa4584293980eb2 110209867;107590188 -Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir1655-Tooth ENA PRJEB33848 ERS3635957 Abusir1655t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1945335 ERR4375049 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4375049/ERR4375049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4375049/ERR4375049_2.fastq.gz f22d9971ef57fe9e47700a8c7457a588;688449cd8b334879880e9020e1ec45e9 131666971;121340094 -Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir1668-Tooth ENA PRJEB33848 ERS3635986 Abusir1668b double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1541347 ERR4375136 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/006/ERR4375136/ERR4375136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/006/ERR4375136/ERR4375136_2.fastq.gz effef5dfd1a98d96b9e3fe315f3571f1;998c0eb27a55a32b6fe0c9414bfffa84 100349234;96655523 -Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir1668-Tooth ENA PRJEB33848 ERS3636003 Abusir1668t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1713268 ERR4375137 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/007/ERR4375137/ERR4375137_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/007/ERR4375137/ERR4375137_2.fastq.gz e0c16b10c7223f0f06dc877b967efade;159f44266cd022b79bcba198793b4426 118529958;117196832 -Caruana2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double AccuPrime Pfx DNA none HiSeq X Ten PAIRED WGS 526840783 ERR3828670 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/000/ERR3828670/ERR3828670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/000/ERR3828670/ERR3828670_2.fastq.gz 8bb30abf98faae0b4e32879e73d0fddb;2c14f5f656437db800c7d440b43118ec 32454725484;34339312668 -Caruana2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double AccuPrime Pfx DNA none HiSeq X Ten PAIRED WGS 28036224 ERR6504159 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR650/009/ERR6504159/ERR6504159.fastq.gz 17a0ca6e5e6bf71c9baf67a3469c9667 1215957980 -Caruana2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double AccuPrime Pfx DNA none HiSeq X Ten SINGLE WGS 26132707 ERR3828725 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/005/ERR3828725/ERR3828725.fastq.gz bdbd5c57583dd407cfb4fd238f65a64e 1141752081 -Caruana2023 2023 10.1007/s13313-023-00936-6 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 191158993 ERR3841646 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/006/ERR3841646/ERR3841646.fastq.gz ad40e5810f4cade26206881f064d781a 8028301308 -Caruana2023 2023 10.1007/s13313-023-00936-6 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 7930905 ERR3841647 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/007/ERR3841647/ERR3841647.fastq.gz 59264a85b271b4cc44ece2e409ed6257 329376589 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chincha-UC12-12-Tooth ENA PRJEB37726 ERS4421181 SC79-L1101 single AmpliTaq Gold DNA half-udg HiSeq X Ten PAIRED WGS 285113997 ERR4017942 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_2.fastq.gz 818b384816f44c7b1879294fd37bd299;0d2e65636f7a46edf753df2e68dd8a5b 18195979831;21200990407 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chincha-UC12-24-Tooth ENA PRJEB37726 ERS4421183 SC79-L1096 single AmpliTaq Gold DNA half-udg HiSeq X Ten PAIRED WGS 283637918 ERR4017944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_2.fastq.gz 8c7a2105a5d34c1160ea68cc6c459a7f;9365adbf8f8538a7a63631f1b3e56bda 18392091676;21164798356 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chincha-UC8-8168-Tooth ENA PRJEB37726 ERS4421185 SC79-L1099 single AmpliTaq Gold DNA half-udg HiSeq X Ten PAIRED WGS 255728754 ERR4017946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_2.fastq.gz c931ada4db74d678bc82e71dad544556;e648c62aaad77dd722f482cfd6f68d0e 16428825487;18295596682 -Caruana2023 2023 10.1007/s13313-023-00936-6 El_Yaral-Bone SRA PRJNA244165 SRS592075 sample_64 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 50916301 SRR1238559 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_2.fastq.gz f62e1e3dd90fb7fd0324e920f15ab8bd;b635c5da56ca1b3dd185678c9f9df508 3713855268;3742735134 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chiribaya_Alta-Bone SRA PRJNA244165 SRS591994 sample_54 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 80406577 SRR1238558 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_2.fastq.gz 72ade0f81eed372eae9fb927a484aa44;5f1fa7e6729773322b52903151f03192 5821824690;5839496681 -Caruana2023 2023 10.1007/s13313-023-00936-6 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double KAPA HiFi HotStart DNA none Illumina HiSeq 2500 PAIRED WGS 12285216 SRR1298750 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_2.fastq.gz 0a15035340b0c7035d3bb909880b7b0e;0922a0583a8f80ec1508ad759179176f 986232779;962732023 -Caruana2023 2023 10.1007/s13313-023-00936-6 Peru-NA42-Bone SRA PRJNA246597 SRS620295 NA42 double KAPA HiFi HotStart DNA full-udg Illumina HiSeq 2500 PAIRED WGS 8330163 SRR1298752 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/002/SRR1298752/SRR1298752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/002/SRR1298752/SRR1298752_2.fastq.gz 11a8d69baa09d592a540b098a730f291;f2b6407d15e52c48950109f9a0433450 682701697;664051670 -Caruana2023 2023 10.1007/s13313-023-00936-6 Peru-NA42-Bone SRA PRJNA246597 SRS620295 NA42 double KAPA HiFi HotStart DNA full-udg Illumina HiSeq 2500 PAIRED WGS 18730377 SRR1314214 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_2.fastq.gz d251b55d54eba0b090678c137b7db1a2;3f080f16f1ad832a0a19b532e0f3461f 1571141325;1542055871 -Caruana2023 2023 10.1007/s13313-023-00936-6 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double KAPA HiFi HotStart DNA none Illumina HiSeq 2500 PAIRED WGS 22453782 SRR1314212 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_2.fastq.gz 2d98d878adca254a59847145e4714b3e;25bf14d82da531b60a3ca430b90877f4 1871792459;1847705551 -Caruana2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 5673426 SRR5169886 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_2.fastq.gz 990dd87c0889dfb683b63a81547e18ff;9920fbe01c61b92ba8b7c655dda5e6ea 371088934;370621153 -Caruana2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 SINGLE Unknown 11699427 SRR5169887 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/007/SRR5169887/SRR5169887.fastq.gz 0554a6c3520470fed11f5859dcf6ff60 654473091 -Caruana2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_BAM double Platinum Taq DNA-Polymerase High Fidelity none NextSeq 500 SINGLE Unknown 850652 SRR5182352 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/002/SRR5182352/SRR5182352.fastq.gz cacc950730273faf12248a8cf993d847 22154218 -Caruana2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 SINGLE Unknown 5047103 SRR5169885 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/005/SRR5169885/SRR5169885.fastq.gz e738d5fc9710f7d66bbd52398aef88ee 303750743 -Caruana2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 14110398 SRR5169888 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_2.fastq.gz dbb0c55e9c1da142301d4bdca8dde663;d17973f6ff1784e11a00e13cb9963253 918308388;927811702 -Caruana2023 2023 10.1007/s13313-023-00936-6 Gniezno-Tooth SRA PRJNA354503 SRS1815300 PCA0162 single AmpliTaq Gold DNA none Illumina Genome Analyzer II SINGLE WGS 6594634 SRR5047069 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/009/SRR5047069/SRR5047069.fastq.gz 6df299e1a545cb4a7af8bccc6645696f 441544945 -Caruana2023 2023 10.1007/s13313-023-00936-6 Punta_Candelero-Tooth SRA PRJNA557308 SRS5212084 PC-119-WGE double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 13553081 SRR9898505 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR989/005/SRR9898505/SRR9898505.fastq.gz 5337cb2a6102a497dda11a6381238cb6 567421190 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046399 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046399/DRR046399.fastq.gz 59098fe5c2d339f49a29f62bb581df0d 3031799168 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046405 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046405/DRR046405.fastq.gz 73f76a8c76f4548200740792cec3e80f 1480013579 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R1 double Unknown none Illumina MiSeq PAIRED WGS 135268 DRR046406 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046406/DRR046406.fastq.gz 37c506c70b5f4384eac3daf49bbf1806 13168706 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R2 double Unknown none Illumina MiSeq PAIRED WGS 135268 DRR046407 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046407/DRR046407.fastq.gz b08daf33376d9b8769638c68ef9e1624 14586872 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R1 double Unknown none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046408 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046408/DRR046408.fastq.gz 792187bcc4f5a0837c33bfa9bcd45ff7 25135887359 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R2 double Unknown none Illumina MiSeq PAIRED WGS 77847 DRR046411 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046411/DRR046411.fastq.gz a185e6ef0736d5798b73d57eade9aefe 8570877 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046402 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046402/DRR046402.fastq.gz 251cfd9c110f0c258b92986757c5e08e 2236884763 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046398 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046398/DRR046398.fastq.gz dd07acfd074d7ab3de3a737a11a02bbf 2923006982 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046400 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046400/DRR046400.fastq.gz 9baaa4283c72e838b97cec348101b1e6 2739068719 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046401 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046401/DRR046401.fastq.gz 2c7dd699fe0ed1044b150de785c8ac16 2864519935 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046403 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046403/DRR046403.fastq.gz 05f383ec42a1d9c5d73e15c91b867904 2312625893 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046404 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046404/DRR046404.fastq.gz 4589fb0baa96aee3f653d2e6de17e5fd 1438715827 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R2 double Unknown none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046409 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046409/DRR046409.fastq.gz c66e84985b2b86e506713a055303f3fc 25985687100 +Hodgkins2023 2023 10.1007/s13313-023-00936-7 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R1 double Unknown none Illumina MiSeq PAIRED WGS 77847 DRR046410 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046410/DRR046410.fastq.gz 374b027632e96e155944a5ffff376fc3 7809572 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 SINGLE Targeted-Capture 163 ERR1937826 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/006/ERR1937826/ERR1937826.fastq.gz 4028690b02008c7d6934e4a399a3c324 8498 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 PAIRED Targeted-Capture 76673447 ERR1937833 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_2.fastq.gz 9f5d8938ecfab81ff4b06cf5b85ecd84;9b0a31ebf902f6749b3d2bb66fe98583 3888369913;4105585278 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 SINGLE Targeted-Capture 5422 ERR1937825 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937825/ERR1937825.fastq.gz a0b9ad0f50ea8d3e84968e1a6b48a34f 196674 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE WGS 21 ERR1937828 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/008/ERR1937828/ERR1937828.fastq.gz 0853f9b447d7b2d3ea74c10e8e7b698a 882 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 PAIRED Targeted-Capture 52435610 ERR1937834 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_2.fastq.gz 8bdc8dc708983ac9334f59ff5d3bca09;9b02c90be8f45c0a9bdcb138459bdd64 2172525415;2376886625 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE WGS 20404 ERR1937827 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/007/ERR1937827/ERR1937827.fastq.gz 6413c8cb99df1ce1762913cadf28329c 537498 +Hodgkins2023 2023 10.1007/s13313-023-00936-7 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 2_paired_fastq double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 44375613 ERR1937835 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_2.fastq.gz 227dbeb7889d5b4e2f5188c56d079576;d0d9ee382a5ad825a4431ebfad77ba9f 2421609326;2479467479 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 807 ERR1942918 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1942918/ERR1942918.fastq.gz 8c002eac0175550cd4e5fd966261b50c 26359 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 318125040 ERR2112574 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112574/ERR2112574.fastq.gz d29e8511b8c860889920240560f28963 11592228429 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 320155752 ERR2112575 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112575/ERR2112575.fastq.gz 1c3931ef9c7b3198fd89eed4c4af79aa 11523747356 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 320577112 ERR2112576 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112576/ERR2112576.fastq.gz c01e8e624b5e7e542a6a53060eda2963 11612997118 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 286756923 ERR2112577 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112577/ERR2112577.fastq.gz 1b43fd6bdd9e0f372e0370426e502ae9 10175356811 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 165092355 ERR2112578 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112578/ERR2112578.fastq.gz a546c8d02e34ab7ba9bf9b9b70edc110 6042098938 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-004-Tooth ENA PRJEB86458 ERS1906198 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 32788454 ERR2111944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2111944/ERR2111944.fastq.gz 2268b27c14ddaa9fe8ba1994dca180b7 1476338852 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 83657790 ERR2111947 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2111947/ERR2111947.fastq.gz 28d80ed137a4f2749c8df338f1396296 4616384352 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 84678681 ERR2111948 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2111948/ERR2111948.fastq.gz 2670f6ee30cdb2e9cf25194b1d00352f 4487414231 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 41600057 ERR2111950 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/000/ERR2111950/ERR2111950.fastq.gz 7d2f61ffbc3704b514b1ad49c83cc2ea 2283826200 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42454995 ERR2111951 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2111951/ERR2111951.fastq.gz 166f95e2b9def23d98644c5c37f39841 2239935032 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 46432244 ERR2112075 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112075/ERR2112075.fastq.gz c3058a6ab2a74162e841055c2c9871e7 3315636400 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 41968696 ERR2112076 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112076/ERR2112076.fastq.gz c1f0637d92139b565497ff8eb58dc708 3024212774 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42694502 ERR2112077 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112077/ERR2112077.fastq.gz 527ea4fcb4e247423862d8d65850297f 2971810358 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 56519202 ERR2112078 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112078/ERR2112078.fastq.gz 746c40aa7f5364b424a8a010625ab555 4015798460 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 103034192 ERR2112082 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/002/ERR2112082/ERR2112082.fastq.gz b494900e3eb4faa8fc519510c3d18044 4339155003 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 48006465 ERR2112095 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112095/ERR2112095.fastq.gz aa23291e1ffa281f02cb00424cabca88 2904018843 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 46090647 ERR2112097 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112097/ERR2112097.fastq.gz a3bc3849f6ae72755564f0639badf10b 2763637774 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 34599863 ERR2111945 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2111945/ERR2111945.fastq.gz be2c0610c72a60232d3d2ceacfc45c15 1531332605 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 43607924 ERR2111949 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/009/ERR2111949/ERR2111949.fastq.gz c12312b0e05b7364e4ae34ff58dbed2b 2330733778 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 48025167 ERR2112074 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112074/ERR2112074.fastq.gz 56b44ec8a3f4a84f0e6e52f23a45244f 2650703816 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 51462140 ERR2112079 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/009/ERR2112079/ERR2112079.fastq.gz cb086c299d3dd88bea8b8497712d2f23 3674875735 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 52674925 ERR2112080 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/000/ERR2112080/ERR2112080.fastq.gz 444cfc9e7f1312e42f812bf1e0437f8b 3656995820 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 247085213 ERR2112083 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/003/ERR2112083/ERR2112083.fastq.gz 5e871b7f274fd4045af8ca7a99ba6fb1 12125066589 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 156625959 ERR2112084 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112084/ERR2112084.fastq.gz 1f89e2c52b4811dfcc047ed1ee608b7e 7764413478 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 95745866 ERR2112093 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/003/ERR2112093/ERR2112093.fastq.gz 7bd19b4ef5a6ac548a04fe4e67afc7cc 6033829981 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 97073096 ERR2112094 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112094/ERR2112094.fastq.gz 3d7cae0f6e17f95675644668c8b58c43 5838900641 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 30451552 ERR2185281 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/001/ERR2185281/ERR2185281.fastq.gz ab6526f8ff7e7706029265c64df6ffac 1188674769 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 28674836 ERR2185284 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/004/ERR2185284/ERR2185284.fastq.gz 25cd96b8767c4435b1fa287ffa9a57d9 1206388101 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 86740492 ERR2111946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2111946/ERR2111946.fastq.gz 810b089d785ebd1edbad3a41226ce5ad 4637501739 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 50136895 ERR2112081 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2112081/ERR2112081.fastq.gz 154863c74e9827eb9fee2b3a630ac19e 2230636146 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 37810056 ERR2112091 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2112091/ERR2112091.fastq.gz 9d9ff02519fdb933fe98adbac42996b3 1904292211 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 101242754 ERR2112092 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/002/ERR2112092/ERR2112092.fastq.gz b40662014d1863d723646aecec72da1b 6139469451 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 44839252 ERR2112096 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112096/ERR2112096.fastq.gz a0e40d36ccb46a36986b6396ccbdef39 2801279215 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-013-Tooth ENA PRJEB86458 ERS1906204 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42367542 ERR2112098 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112098/ERR2112098.fastq.gz 405950db4d2dd6088e452d76e574ed6b 2206630410 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 16219915 ERR2185282 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/002/ERR2185282/ERR2185282.fastq.gz ae8291e6f7c8dc421db1c5969b9230e3 681016439 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 187683798 ERR2185283 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/003/ERR2185283/ERR2185283.fastq.gz 96d19ed679b9b9a6c5b601fe840f571e 6382804778 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none NextSeq 500 PAIRED Targeted-Capture 861998 ERR2204611 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2204611/ERR2204611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2204611/ERR2204611_2.fastq.gz e97363c161e90082e6eb8fa53a3b8a58;939c0a52c40cec8b8cefdb38851435ba 39871514;41647617 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none NextSeq 500 PAIRED Targeted-Capture 28118462 ERR2204612 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/002/ERR2204612/ERR2204612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/002/ERR2204612/ERR2204612_2.fastq.gz ddfc21cae3d74b9d1c80f06f8115a71b;2b337c73947e90b37b4006bfed0e3fb5 1144496374;1271866282 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CUDG double PfuTurbo Cx Hotstart DNA full-udg NextSeq 500 PAIRED Targeted-Capture 2863375 ERR2204613 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2204613/ERR2204613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2204613/ERR2204613_2.fastq.gz c3c2cd5a50992713d7ed50f5b91dd97b;eb94f2bba3435db0075a3b6fda474505 131797035;136207848 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CUDG double PfuTurbo Cx Hotstart DNA full-udg NextSeq 500 PAIRED Targeted-Capture 96106710 ERR2204614 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204614/ERR2204614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204614/ERR2204614_2.fastq.gz cdcbb32ff04e32423a6d04609a70870e;f010594dfbd557e727f45ed8fd262db3 3851279631;4247569192 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none Illumina HiSeq 2000 PAIRED WGS 994328 ERR2204644 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204644/ERR2204644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204644/ERR2204644_2.fastq.gz 73d0b651d0d03c55e2dddbe75d77dd9d;0c02751f3c5e30e5c43e352edc178964 73031399;75636413 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Cueva_de_los_Lagos-Tooth ENA PRJEB23467 ERS2059523 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 179251988 ERR2224078 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR222/008/ERR2224078/ERR2224078.fastq.gz 245587cc316cb175e2eed76a5907d42e 5551553388 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Cueva_de_los_Lagos-Tooth ENA PRJEB23467 ERS2059523 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 1164531241 ERR2225784 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR222/004/ERR2225784/ERR2225784.fastq.gz d028912fb20f3a5c731406ad82d2e363 48849563848 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Yámana-Tooth ENA PRJEB24629 ERS2160137 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 808299942 ERR2270785 fastq_all ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR227/ERR2270785/IPY10.All.fastq.gz 3c32116386822aa24ff2efa67e5d2e94 45202276574 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Vác-Mummy-Tissue ENA PRJEB7454 ERS563409 92-A1 double Unknown none Illumina MiSeq PAIRED WGS 20084713 ERR651004 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_2.fastq.gz 3f07d29738185963f380f637b9b93065;0d96c823b7998af0b2165fe46b7e542e 2984512816;3476815638 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_10 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 75660984 ERR966295 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966295/ERR966295.fastq.gz 3f43def0d896afea489f3c5fccea36c3 3930297733 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_11 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 103486178 ERR966296 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966296/ERR966296.fastq.gz b514bc662c122adb6ac42d5acf3b05f0 5330914571 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_13 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 285814147 ERR966298 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966298/ERR966298.fastq.gz dc75bf256f29ebbd70954d7bd7ab2c9a 16162263061 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_6 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 30343646 ERR966310 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966310/ERR966310.fastq.gz 6efffec6ad1d62ed52e2cc3d3c5a7f43 1416897788 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_8 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 87962797 ERR966312 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966312/ERR966312.fastq.gz 5ceca13c5c30374209d7ea44e40de87c 4175899212 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_12 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 107286297 ERR966297 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966297/ERR966297.fastq.gz ec6261bc595a0d84a6606143492f91ec 5571578708 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_15 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 40472562 ERR966300 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966300/ERR966300.fastq.gz 600dc595ac8de4fe232ca1c00c456fec 2368473624 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_17 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 86611474 ERR966302 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966302/ERR966302.fastq.gz 1d2c52049d8c8302e8d45b83c2ce7f4f 5140536631 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_2 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 58022324 ERR966305 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966305/ERR966305.fastq.gz 9350277d1aafa8c43cec850f9e38f0e1 2756025719 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_20 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 136573362 ERR966306 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966306/ERR966306.fastq.gz 98688aecf3d8b0969298d39010220e23 6672345221 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_3 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 49940208 ERR966307 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966307/ERR966307.fastq.gz ff03f2f79b3c528eb1c98af05a3fad62 2423386088 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_4 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 26872695 ERR966308 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966308/ERR966308.fastq.gz 2557624cd4bd5e82ac3e32fc8fa4ed85 1254939750 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_7 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 94822961 ERR966311 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966311/ERR966311.fastq.gz 871dbd8cd245d22c9cdabc166b9118e5 4496790226 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_1 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 49502893 ERR966294 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966294/ERR966294.fastq.gz a808f03060305f2523287cf004fa29fc 2350014565 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_14 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 23206451 ERR966299 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966299/ERR966299.fastq.gz 4139f9e28a3f01f79f1e8fc6163342ef 1361039728 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_16 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 25867706 ERR966301 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966301/ERR966301.fastq.gz 142744b3e9bb59d960fb7959e5cadd24 1522488144 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_18 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 100755898 ERR966303 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966303/ERR966303.fastq.gz 66be0bbef7e8660498b971e19236b005 5975543012 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_19 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 85601752 ERR966304 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966304/ERR966304.fastq.gz 2377b397bc7659809ba3a3b58c9abdda 5175038658 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_5 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 47945651 ERR966309 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966309/ERR966309.fastq.gz d27e80a6d72a4e6c366a4481847639df 2206834714 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_9 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 98694708 ERR966313 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966313/ERR966313.fastq.gz 9cfcbea3b01094ef1ab7b0bd30f84c5a 4681565044 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 11472673 ERR966440 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966440/ERR966440.fastq.gz 28855b18583116ffa22e1f40fd963278 694295918 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libCAGCTA.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 50343799 ERR966426 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966426/ERR966426.fastq.gz 88d4a682975953ad845683f12590a1d3 2888163703 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 3444716 ERR966430 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966430/ERR966430.fastq.gz 075f7fe98e6ec5cde875bf670cb49c47 201382661 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Marseille-Tooth ENA PRJEB12163 ERS1020860 OBS107_UDG double AccuPrime Pfx DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 14646710 ERR1193532 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1193532/ERR1193532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1193532/ERR1193532_2.fastq.gz 884a4afc0b75b86bbb323f58b80a041c;9e5e2bca98fdf7b541b490f5955a9ad3 1149013961;1150891719 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Marseille-Tooth ENA PRJEB12163 ERS1020860 OBS107 double AccuPrime Pfx DNA full-udg Illumina HiSeq 2000 SINGLE Targeted-Capture 851096 ERR1193537 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1193537/ERR1193537.fastq.gz 864da17f8807ceecad7368caf2c92997 39236628 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Barcelona-3031-Tooth ENA PRJEB13664 ERS1124787 Barcelona3031 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 61845279 ERR1368878 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/008/ERR1368878/ERR1368878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/008/ERR1368878/ERR1368878_2.fastq.gz 095af025dc7f11f79502974aa75e7386;4130f9ec25f3df279f8142845961aadb 4422361795;4446780768 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 SLC-France-Tooth ENA PRJEB24499 ERS2865271 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 203877595 ERR2862150 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/000/ERR2862150/ERR2862150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/000/ERR2862150/ERR2862150_2.fastq.gz a6112d04b304b2375dae6c34033bbc16;acafcc79f3d021db8f3308d9ac935bcf 11059312752;11017819383 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 SLC-France-Tooth ENA PRJEB24499 ERS2865271 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 221791489 ERR2862151 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/001/ERR2862151/ERR2862151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/001/ERR2862151/ERR2862151_2.fastq.gz f80f8e1d0712e6c0f2a65e79acc67ba3;190cc46629e5eda6fef664d6cb80ee3d 11578595157;11538874156 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Karolva-Tooth ENA PRJEB32786 ERS3568107 unspecified single AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Unknown 1140330766 ERR3426230 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR342/000/ERR3426230/ERR3426230.fastq.gz a132e833c23eea070bcaacf5ec544fc4 52616619455 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Karolva-Tooth ENA PRJEB32786 ERS3568107 unspecified single AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Unknown 171457258 ERR3426214 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR342/004/ERR3426214/ERR3426214.fastq.gz b8738de2667671d5a178a72cadfee9c0 5737682401 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir1595-Tooth ENA PRJEB33848 ERS3635963 Abusir1595t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1752726 ERR4374869 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4374869/ERR4374869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4374869/ERR4374869_2.fastq.gz ae15532ee7d7f77e66e514c3aba99136;7a90231a56f5b797c3b57343139ff922 123648672;117691019 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir1671-Tooth ENA PRJEB33848 ERS3636004 Abusir1671t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1782693 ERR4375141 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/001/ERR4375141/ERR4375141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/001/ERR4375141/ERR4375141_2.fastq.gz 5ae99bc0ce03b22aff0d9850f1fde5d3;175c717414a955be4cf03ec799d76262 125757629;120330029 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir1607-Tooth ENA PRJEB33848 ERS3636032 Abusir1607t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1586988 ERR4374914 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/004/ERR4374914/ERR4374914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/004/ERR4374914/ERR4374914_2.fastq.gz 1d77a89866d7447f45292a4dec6658a4;55da618b78bfecc4baa4584293980eb2 110209867;107590188 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir1655-Tooth ENA PRJEB33848 ERS3635957 Abusir1655t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1945335 ERR4375049 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4375049/ERR4375049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4375049/ERR4375049_2.fastq.gz f22d9971ef57fe9e47700a8c7457a588;688449cd8b334879880e9020e1ec45e9 131666971;121340094 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir1668-Tooth ENA PRJEB33848 ERS3635986 Abusir1668b double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1541347 ERR4375136 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/006/ERR4375136/ERR4375136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/006/ERR4375136/ERR4375136_2.fastq.gz effef5dfd1a98d96b9e3fe315f3571f1;998c0eb27a55a32b6fe0c9414bfffa84 100349234;96655523 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir1668-Tooth ENA PRJEB33848 ERS3636003 Abusir1668t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1713268 ERR4375137 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/007/ERR4375137/ERR4375137_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/007/ERR4375137/ERR4375137_2.fastq.gz e0c16b10c7223f0f06dc877b967efade;159f44266cd022b79bcba198793b4426 118529958;117196832 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double AccuPrime Pfx DNA none HiSeq X Ten PAIRED WGS 526840783 ERR3828670 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/000/ERR3828670/ERR3828670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/000/ERR3828670/ERR3828670_2.fastq.gz 8bb30abf98faae0b4e32879e73d0fddb;2c14f5f656437db800c7d440b43118ec 32454725484;34339312668 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double AccuPrime Pfx DNA none HiSeq X Ten PAIRED WGS 28036224 ERR6504159 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR650/009/ERR6504159/ERR6504159.fastq.gz 17a0ca6e5e6bf71c9baf67a3469c9667 1215957980 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double AccuPrime Pfx DNA none HiSeq X Ten SINGLE WGS 26132707 ERR3828725 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/005/ERR3828725/ERR3828725.fastq.gz bdbd5c57583dd407cfb4fd238f65a64e 1141752081 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 191158993 ERR3841646 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/006/ERR3841646/ERR3841646.fastq.gz ad40e5810f4cade26206881f064d781a 8028301308 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 7930905 ERR3841647 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/007/ERR3841647/ERR3841647.fastq.gz 59264a85b271b4cc44ece2e409ed6257 329376589 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha-UC12-12-Tooth ENA PRJEB37726 ERS4421181 SC79-L1101 single AmpliTaq Gold DNA half-udg HiSeq X Ten PAIRED WGS 285113997 ERR4017942 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_2.fastq.gz 818b384816f44c7b1879294fd37bd299;0d2e65636f7a46edf753df2e68dd8a5b 18195979831;21200990407 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha-UC12-24-Tooth ENA PRJEB37726 ERS4421183 SC79-L1096 single AmpliTaq Gold DNA half-udg HiSeq X Ten PAIRED WGS 283637918 ERR4017944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_2.fastq.gz 8c7a2105a5d34c1160ea68cc6c459a7f;9365adbf8f8538a7a63631f1b3e56bda 18392091676;21164798356 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha-UC8-8168-Tooth ENA PRJEB37726 ERS4421185 SC79-L1099 single AmpliTaq Gold DNA half-udg HiSeq X Ten PAIRED WGS 255728754 ERR4017946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_2.fastq.gz c931ada4db74d678bc82e71dad544556;e648c62aaad77dd722f482cfd6f68d0e 16428825487;18295596682 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 El_Yaral-Bone SRA PRJNA244165 SRS592075 sample_64 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 50916301 SRR1238559 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_2.fastq.gz f62e1e3dd90fb7fd0324e920f15ab8bd;b635c5da56ca1b3dd185678c9f9df508 3713855268;3742735134 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chiribaya_Alta-Bone SRA PRJNA244165 SRS591994 sample_54 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 80406577 SRR1238558 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_2.fastq.gz 72ade0f81eed372eae9fb927a484aa44;5f1fa7e6729773322b52903151f03192 5821824690;5839496681 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double KAPA HiFi HotStart DNA none Illumina HiSeq 2500 PAIRED WGS 12285216 SRR1298750 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_2.fastq.gz 0a15035340b0c7035d3bb909880b7b0e;0922a0583a8f80ec1508ad759179176f 986232779;962732023 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Peru-NA42-Bone SRA PRJNA246597 SRS620295 NA42 double KAPA HiFi HotStart DNA full-udg Illumina HiSeq 2500 PAIRED WGS 8330163 SRR1298752 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/002/SRR1298752/SRR1298752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/002/SRR1298752/SRR1298752_2.fastq.gz 11a8d69baa09d592a540b098a730f291;f2b6407d15e52c48950109f9a0433450 682701697;664051670 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Peru-NA42-Bone SRA PRJNA246597 SRS620295 NA42 double KAPA HiFi HotStart DNA full-udg Illumina HiSeq 2500 PAIRED WGS 18730377 SRR1314214 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_2.fastq.gz d251b55d54eba0b090678c137b7db1a2;3f080f16f1ad832a0a19b532e0f3461f 1571141325;1542055871 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double KAPA HiFi HotStart DNA none Illumina HiSeq 2500 PAIRED WGS 22453782 SRR1314212 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_2.fastq.gz 2d98d878adca254a59847145e4714b3e;25bf14d82da531b60a3ca430b90877f4 1871792459;1847705551 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 5673426 SRR5169886 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_2.fastq.gz 990dd87c0889dfb683b63a81547e18ff;9920fbe01c61b92ba8b7c655dda5e6ea 371088934;370621153 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 SINGLE Unknown 11699427 SRR5169887 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/007/SRR5169887/SRR5169887.fastq.gz 0554a6c3520470fed11f5859dcf6ff60 654473091 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_BAM double Platinum Taq DNA-Polymerase High Fidelity none NextSeq 500 SINGLE Unknown 850652 SRR5182352 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/002/SRR5182352/SRR5182352.fastq.gz cacc950730273faf12248a8cf993d847 22154218 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 SINGLE Unknown 5047103 SRR5169885 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/005/SRR5169885/SRR5169885.fastq.gz e738d5fc9710f7d66bbd52398aef88ee 303750743 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 14110398 SRR5169888 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_2.fastq.gz dbb0c55e9c1da142301d4bdca8dde663;d17973f6ff1784e11a00e13cb9963253 918308388;927811702 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Gniezno-Tooth SRA PRJNA354503 SRS1815300 PCA0162 single AmpliTaq Gold DNA none Illumina Genome Analyzer II SINGLE WGS 6594634 SRR5047069 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/009/SRR5047069/SRR5047069.fastq.gz 6df299e1a545cb4a7af8bccc6645696f 441544945 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Punta_Candelero-Tooth SRA PRJNA557308 SRS5212084 PC-119-WGE double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 13553081 SRR9898505 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR989/005/SRR9898505/SRR9898505.fastq.gz 5337cb2a6102a497dda11a6381238cb6 567421190 From 6d9922bf1b08724bceabb64aa6c830653bb6bfbe Mon Sep 17 00:00:00 2001 From: DianaSpurite <112383244+DianaSpurite@users.noreply.github.com> Date: Thu, 28 Sep 2023 20:27:48 +0200 Subject: [PATCH 07/16] Update ancientsinglegenome-hostassociated_samples.tsv replaced the wrong author with the correct one - Hodgkins2023 --- ...entsinglegenome-hostassociated_samples.tsv | 77 +++++++++---------- 1 file changed, 38 insertions(+), 39 deletions(-) diff --git a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv index 63461a996..e756108f9 100644 --- a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv +++ b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv @@ -605,42 +605,41 @@ Parker2023 2023 10.1371/journal.ppat.1011404 Krakauer Berg, Peißen, Halle (Saal Parker2023 2023 10.1371/journal.ppat.1011404 Krakauer Berg, Peißen, Halle (Saale), Saxony-Anhalt 51.5 12.05 Germany KRA028 Homo sapiens 600 10.1371/journal.ppat.1011404 bacteria Yersinia pestis skeleton chromosome ENA raw PRJEB61096 ERS14884863 Parker2023 2023 10.1371/journal.ppat.1011404 Krakauer Berg, Peißen, Halle (Saale), Saxony-Anhalt 51.5 12.05 Germany KRA032 Homo sapiens 600 10.1371/journal.ppat.1011404 bacteria Yersinia pestis skeleton chromosome ENA raw PRJEB61096 ERS14884864 Long2023 2023 10.1371/journal.ppat.1011538 Convento del Beato Sante, Mombaroccio, Pesaro e Urbino 43.789 12.861 Italy Sante Brancorsini Homo sapiens 600 10.1371/journal.ppat.1011538 bacteria Brucella melitensis kidney stone chromosome SRA raw PRJNA966239 SRS17532534 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A1-Tooth Homo sapiens 3000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021185 -Caruana2023 2023 10.1007/s13313-023-00936-6 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A2-Tooth Homo sapiens 3000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021186 -Caruana2023 2023 10.1007/s13313-023-00936-6 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNIII-Tooth Homo sapiens 3800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1647163 -Caruana2023 2023 10.1007/s13313-023-00936-6 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNII-Tooth Homo sapiens 3800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1660772 -Caruana2023 2023 10.1007/s13313-023-00936-6 Haunstetten Unterer Talweg 85 48.318 10.891 Germany Augsburg-Tooth Homo sapiens 4200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB19335 ERS1892067 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-011-Tooth Homo sapiens 1200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 PRJEB86458 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-004-Tooth Homo sapiens 1200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906198 -Caruana2023 2023 10.1007/s13313-023-00936-6 Gran Canaria 27.92 -15.547 Spain GranCanaria-005-Tooth Homo sapiens 1000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906199 -Caruana2023 2023 10.1007/s13313-023-00936-6 Gran Canaria 27.92 -15.547 Spain GranCanaria-008-Tooth Homo sapiens 1000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906202 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-012-Tooth Homo sapiens 1300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906203 -Caruana2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-013-Tooth Homo sapiens 1300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906204 -Caruana2023 2023 10.1007/s13313-023-00936-6 Teposcolula-Yucundaa; Mixteca Alta region, Oaxaca 17.502 -97.467 Mexico Tepos_35-Tooth Homo sapiens 400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23438 ERS2020227 -Caruana2023 2023 10.1007/s13313-023-00936-6 Cueva de los Lagos 41.962 -1.993 Spain Cueva_de_los_Lagos-Tooth Homo sapiens 4000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23467 ERS2059523 -Caruana2023 2023 10.1007/s13313-023-00936-6 Yámana 54.933 -67.616 Chile Yámana-Tooth Homo sapiens 800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24629 ERS2160137 -Caruana2023 2023 10.1007/s13313-023-00936-6 Vác 47.784 19.135 Hungary Vác-Mummy-Tissue Homo sapiens 200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tissue chromosome ENA raw PRJEB7454 ERS563409 -Caruana2023 2023 10.1007/s13313-023-00936-6 Maderas Enco -18.478 -70.312 Chile Chinchorro-Mummy-Bone Homo sapiens 200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793932 -Caruana2023 2023 10.1007/s13313-023-00936-6 "Piedra -Gorda" 23.6 -109.6 Mexico Pericues-BC28-Bone Homo sapiens 550 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793942 -Caruana2023 2023 10.1007/s13313-023-00936-6 l’Observance in Marseille 43.296 5.369 France Marseille-Tooth Homo sapiens 200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB12163 ERS1020860 -Caruana2023 2023 10.1007/s13313-023-00936-6 Saints Màrtirs Just i Pastor, Barcelona 41.387 2.168 Spain Barcelona-3031-Tooth Homo sapiens 1400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB13664 ERS1124787 -Caruana2023 2023 10.1007/s13313-023-00936-6 Saint-Laurent-de-la-Cabrerisse 43.084 2.7 France SLC-France-Tooth Homo sapiens 1300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24499 ERS2865271 -Caruana2023 2023 10.1007/s13313-023-00936-6 Karlova, Tartu 58.371 26.732 Estonia Karolva-Tooth Homo sapiens 4200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB32786 ERS3568107 -Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle 29.9 31.2 Egypt Abusir1655-Tooth Homo sapiens 3100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635957 -Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1595-Tooth Homo sapiens 2900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635963 -Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1668-Tooth Homo sapiens 2200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635986,ERS3636003 -Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1671-Tooth Homo sapiens 2100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636004 -Caruana2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1607-Tooth Homo sapiens 1900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636032 -Caruana2023 2023 10.1007/s13313-023-00936-6 Dacaozi site, Pingan county, Qinghai province 36.5 102.108 China Dacaozi-Tooth Homo sapiens 1900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36297 ERS4255307 -Caruana2023 2023 10.1007/s13313-023-00936-6 Riga 56.95 24.121 Latvia Riga_Cemetery-Tooth Homo sapiens 300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36413 ERS4266549 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chincha -13.476 -76.016 Peru Chincha-UC12-12-Tooth Homo sapiens 400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421181 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chincha -13.476 -76.016 Peru Chincha-UC12-24-Tooth Homo sapiens 400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421183 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chincha -13.477 -76.025 Peru Chincha-UC8-8168-Tooth Homo sapiens 300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421185 -Caruana2023 2023 10.1007/s13313-023-00936-6 Chiribaya Alta, Cemetery 1 -17.635 -71.293 Peru Chiribaya_Alta-Bone Homo sapiens 800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS591994 -Caruana2023 2023 10.1007/s13313-023-00936-6 El Yaral, Cemetery 2 -17.149 -70.924 Peru El_Yaral-Bone Homo sapiens 700 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS592075 -Caruana2023 2023 10.1007/s13313-023-00936-6 Laguna de los Condores -6.848 -77.698 Peru Peru-NA40-Bone Homo sapiens 1100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620293 -Caruana2023 2023 10.1007/s13313-023-00936-6 Laguna de los Condores -6.848 -77.698 Peru Peru-NA42-Bone Homo sapiens 1100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620295 -Caruana2023 2023 10.1007/s13313-023-00936-6 Pueblo Bonito, New Mexico 36.06 -107.961 USA Pueblo_Bonito-Tooth Homo sapiens 900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA353635 SRS1853899 -Caruana2023 2023 10.1007/s13313-023-00936-6 Gniezno, Wielkopolska 52.54 17.59 Poland Gniezno-Tooth Homo sapiens 1000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA354503 SRS1815300 -Caruana2023 2023 10.1007/s13313-023-00936-6 Punta Candelero 18.091 -65.789 Puerto Rico Punta_Candelero-Tooth Homo sapiens 1100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA557308 SRS5212084 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A1-Tooth Homo sapiens 3000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021185 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A2-Tooth Homo sapiens 3000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021186 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNIII-Tooth Homo sapiens 3800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1647163 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNII-Tooth Homo sapiens 3800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1660772 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Haunstetten Unterer Talweg 85 48.318 10.891 Germany Augsburg-Tooth Homo sapiens 4200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB19335 ERS1892067 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-011-Tooth Homo sapiens 1200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 PRJEB86458 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-004-Tooth Homo sapiens 1200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906198 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Gran Canaria 27.92 -15.547 Spain GranCanaria-005-Tooth Homo sapiens 1000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906199 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Gran Canaria 27.92 -15.547 Spain GranCanaria-008-Tooth Homo sapiens 1000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906202 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-012-Tooth Homo sapiens 1300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906203 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-013-Tooth Homo sapiens 1300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906204 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Teposcolula-Yucundaa; Mixteca Alta region, Oaxaca 17.502 -97.467 Mexico Tepos_35-Tooth Homo sapiens 400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23438 ERS2020227 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Cueva de los Lagos 41.962 -1.993 Spain Cueva_de_los_Lagos-Tooth Homo sapiens 4000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23467 ERS2059523 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Yámana 54.933 -67.616 Chile Yámana-Tooth Homo sapiens 800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24629 ERS2160137 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Vác 47.784 19.135 Hungary Vác-Mummy-Tissue Homo sapiens 200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tissue chromosome ENA raw PRJEB7454 ERS563409 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Maderas Enco -18.478 -70.312 Chile Chinchorro-Mummy-Bone Homo sapiens 200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793932 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Piedra Gorda 23.6 -109.6 Mexico Pericues-BC28-Bone Homo sapiens 550 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793942 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 l’Observance in Marseille 43.296 5.369 France Marseille-Tooth Homo sapiens 200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB12163 ERS1020860 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Saints Màrtirs Just i Pastor, Barcelona 41.387 2.168 Spain Barcelona-3031-Tooth Homo sapiens 1400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB13664 ERS1124787 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Saint-Laurent-de-la-Cabrerisse 43.084 2.7 France SLC-France-Tooth Homo sapiens 1300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24499 ERS2865271 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Karlova, Tartu 58.371 26.732 Estonia Karolva-Tooth Homo sapiens 4200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB32786 ERS3568107 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle 29.9 31.2 Egypt Abusir1655-Tooth Homo sapiens 3100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635957 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1595-Tooth Homo sapiens 2900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635963 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1668-Tooth Homo sapiens 2200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635986,ERS3636003 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1671-Tooth Homo sapiens 2100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636004 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1607-Tooth Homo sapiens 1900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636032 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Dacaozi site, Pingan county, Qinghai province 36.5 102.108 China Dacaozi-Tooth Homo sapiens 1900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36297 ERS4255307 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Riga 56.95 24.121 Latvia Riga_Cemetery-Tooth Homo sapiens 300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36413 ERS4266549 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha -13.476 -76.016 Peru Chincha-UC12-12-Tooth Homo sapiens 400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421181 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha -13.476 -76.016 Peru Chincha-UC12-24-Tooth Homo sapiens 400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421183 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha -13.477 -76.025 Peru Chincha-UC8-8168-Tooth Homo sapiens 300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421185 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chiribaya Alta, Cemetery 1 -17.635 -71.293 Peru Chiribaya_Alta-Bone Homo sapiens 800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS591994 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 El Yaral, Cemetery 2 -17.149 -70.924 Peru El_Yaral-Bone Homo sapiens 700 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS592075 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Laguna de los Condores -6.848 -77.698 Peru Peru-NA40-Bone Homo sapiens 1100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620293 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Laguna de los Condores -6.848 -77.698 Peru Peru-NA42-Bone Homo sapiens 1100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620295 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo Bonito, New Mexico 36.06 -107.961 USA Pueblo_Bonito-Tooth Homo sapiens 900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA353635 SRS1853899 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Gniezno, Wielkopolska 52.54 17.59 Poland Gniezno-Tooth Homo sapiens 1000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA354503 SRS1815300 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Punta Candelero 18.091 -65.789 Puerto Rico Punta_Candelero-Tooth Homo sapiens 1100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA557308 SRS5212084 From 72e6d5c2091a275df2e28128df16f55c87365199 Mon Sep 17 00:00:00 2001 From: DianaSpurite <112383244+DianaSpurite@users.noreply.github.com> Date: Thu, 28 Sep 2023 21:46:59 +0200 Subject: [PATCH 08/16] Update CHANGELOG.md correcting author From cb89a7d25e00eb228c4d67d5a8c1c703d881009c Mon Sep 17 00:00:00 2001 From: jfy133 Date: Sat, 30 Sep 2023 08:11:15 +0000 Subject: [PATCH 09/16] [skip ci] Update AncientMetagenomeDir geojson --- .../figures/ancientmetagenomedir.geojson | 5073 +++++++++-------- 1 file changed, 2538 insertions(+), 2535 deletions(-) diff --git a/assets/images/figures/ancientmetagenomedir.geojson b/assets/images/figures/ancientmetagenomedir.geojson index 4a630c3c3..8d4589556 100644 --- a/assets/images/figures/ancientmetagenomedir.geojson +++ b/assets/images/figures/ancientmetagenomedir.geojson @@ -1,1397 +1,1397 @@ { "type": "FeatureCollection", "features": [ -{ "type": "Feature", "properties": { "project_name": "Ahmed2018", "publication_year": 2018, "publication_doi": "10.1016/j.quascirev.2017.11.037", "site_name": "Hässeldala Port", "latitude": 56.16, "longitude": 15.01, "geo_loc_name": "Sweden", "study_primary_focus": "microbial", "sequence_name": "Sediment core #7.4", "depth": 435.0, "sample_name": "HA1.1", "sample_age": 13900, "sample_age_doi": "10.3389/fevo.2019.00189", "feature": "lake", "material": "lake sediment", "sampling_date": 2015.0, "archive": "ENA", "archive_project": "PRJNA378719", "archive_accession": "SRS2040659", "dir_type": "Ancient Metagenome - Environmental", "sample_host": null, "community_type": null, "singlegenome_domain": null, "singlegenome_species": 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"geometry": { "type": "Point", - "coordinates": [15.01012483927933, 56.159785649572768] + "coordinates": [15.010003801556602, 56.160033778629398] } }, { @@ -68,13 +68,13 @@ "singlegenome_species": null, "genome_type": null, "data_type": null, - "plot_latitude": 56.160002565650082, - "plot_longitude": 15.009966714550263, + "plot_latitude": 56.15988628361518, + "plot_longitude": 15.010105802582361, "marker-color": "#4AAE72" }, "geometry": { "type": "Point", - "coordinates": [15.009966714550263, 56.160002565650082] + "coordinates": [15.010105802582361, 56.15988628361518] } }, { @@ -106,13 +106,13 @@ "singlegenome_species": null, "genome_type": null, "data_type": null, - "plot_latitude": 56.160055148399877, - "plot_longitude": 15.009841049157895, + "plot_latitude": 56.160039237846647, + "plot_longitude": 15.009897226114681, "marker-color": "#4AAE72" }, "geometry": { "type": "Point", - "coordinates": [15.009841049157895, 56.160055148399877] + "coordinates": [15.009897226114681, 56.160039237846647] } }, { @@ -144,13 +144,13 @@ "singlegenome_species": null, "genome_type": null, "data_type": null, - "plot_latitude": 56.160075580340312, - "plot_longitude": 15.009928917739494, + "plot_latitude": 56.159914993050393, + "plot_longitude": 15.010037764808896, "marker-color": "#4AAE72" }, "geometry": { "type": "Point", - "coordinates": [15.009928917739494, 56.160075580340312] + "coordinates": [15.010037764808896, 56.159914993050393] } }, { @@ -182,13 +182,13 @@ "singlegenome_species": null, "genome_type": null, "data_type": null, - "plot_latitude": 56.16007823870239, - "plot_longitude": 15.009890864241102, + "plot_latitude": 56.160022535300968, + "plot_longitude": 15.009864619870461, "marker-color": "#4AAE72" }, "geometry": { "type": "Point", - "coordinates": [15.009890864241102, 56.16007823870239] + "coordinates": [15.009864619870461, 56.160022535300968] } }, { @@ -220,13 +220,13 @@ "singlegenome_species": null, "genome_type": null, "data_type": null, - "plot_latitude": 56.159949072563805, - "plot_longitude": 15.010145420305696, + "plot_latitude": 56.159891672228284, + "plot_longitude": 15.009879585095446, "marker-color": "#4AAE72" }, "geometry": { "type": "Point", - "coordinates": [15.010145420305696, 56.159949072563805] + "coordinates": [15.009879585095446, 56.159891672228284] } }, { @@ -258,13 +258,13 @@ "singlegenome_species": null, "genome_type": null, "data_type": null, - "plot_latitude": 56.159971447997329, - "plot_longitude": 15.010050733003039, + "plot_latitude": 56.160003012061857, + "plot_longitude": 15.009979578603042, "marker-color": "#4AAE72" }, "geometry": { "type": "Point", - "coordinates": [15.010050733003039, 56.159971447997329] + "coordinates": [15.009979578603042, 56.160003012061857] } }, { @@ -296,13 +296,13 @@ "singlegenome_species": null, "genome_type": null, "data_type": null, - "plot_latitude": 56.160061174367904, - "plot_longitude": 15.010120577458776, + "plot_latitude": 56.159922643902149, + 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@@ -76668,13 +76668,13 @@ "singlegenome_species": "Hepatitis B virus", "genome_type": "chromosome", "data_type": "consensus,assembly", - "plot_latitude": 46.99703587194945, - "plot_longitude": 66.285145921334021, + "plot_latitude": 46.997014352907982, + "plot_longitude": 66.284942385095988, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [66.285145921334021, 46.99703587194945] + "coordinates": [66.284942385095988, 46.997014352907982] } }, { @@ -76706,13 +76706,13 @@ "singlegenome_species": "Hepatitis B virus", "genome_type": "chromosome", "data_type": "consensus,assembly", - "plot_latitude": 52.8358630113011, - "plot_longitude": 62.892984758004516, + "plot_latitude": 52.835967735595922, + "plot_longitude": 62.89306178591913, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [62.892984758004516, 52.8358630113011] + "coordinates": [62.89306178591913, 52.835967735595922] } }, { @@ -76744,13 +76744,13 @@ "singlegenome_species": 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{ @@ -77314,13 +77314,13 @@ "singlegenome_species": "Salmonella enterica", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 55.303892413659831, - "plot_longitude": 50.085949119175652, + "plot_latitude": 55.303988310281348, + "plot_longitude": 50.086046996060382, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [50.085949119175652, 55.303892413659831] + "coordinates": [50.086046996060382, 55.303988310281348] } }, { @@ -77352,13 +77352,13 @@ "singlegenome_species": "Salmonella enterica", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 55.303961197311096, - "plot_longitude": 50.085923354034996, + "plot_latitude": 55.304009123628376, + "plot_longitude": 50.086098802351444, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [50.085923354034996, 55.303961197311096] + "coordinates": [50.086098802351444, 55.304009123628376] } }, { @@ -77390,13 +77390,13 @@ "singlegenome_species": "Salmonella enterica", 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{ @@ -82520,13 +82520,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 48.716924094229469, - "plot_longitude": 11.495032717621424, + "plot_latitude": 48.716916550773377, + "plot_longitude": 11.494968714891183, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [11.495032717621424, 48.716924094229469] + "coordinates": [11.494968714891183, 48.716916550773377] } }, { @@ -82558,13 +82558,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 48.717048413416862, - "plot_longitude": 11.494916941565181, + "plot_latitude": 48.716976346356653, + "plot_longitude": 11.494879499644355, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [11.494916941565181, 48.717048413416862] + "coordinates": [11.494879499644355, 48.716976346356653] } }, { @@ -82596,13 +82596,13 @@ "singlegenome_species": "Yersinia pestis", 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} }, { @@ -86168,13 +86168,13 @@ "singlegenome_species": "Acinetobacter baumannii", "genome_type": "chromosome", "data_type": "raw,binned_mag,consensus", - "plot_latitude": 40.781056505006703, - "plot_longitude": -73.974074663240145, + "plot_latitude": 40.781006026406885, + "plot_longitude": -73.974060006643015, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [-73.974074663240145, 40.781056505006703] + "coordinates": [-73.974060006643015, 40.781006026406885] } }, { @@ -86206,13 +86206,13 @@ "singlegenome_species": "Mycobacterium leprae", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 63.431016374428545, - "plot_longitude": 10.40093370052765, + "plot_latitude": 63.431168498174124, + "plot_longitude": 10.401161199793304, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [10.40093370052765, 63.431016374428545] + "coordinates": [10.401161199793304, 63.431168498174124] } }, { @@ -86244,13 +86244,13 @@ 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@@ -87042,13 +87042,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "reference_aligned", - "plot_latitude": 66.800015959124082, - "plot_longitude": 152.63336201986397, + "plot_latitude": 66.800007171305893, + "plot_longitude": 152.63336667010884, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [152.633362019863966, 66.800015959124082] + "coordinates": [152.633366670108842, 66.800007171305893] } }, { @@ -87080,13 +87080,13 @@ "singlegenome_species": "Salmonella enterica", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 53.87097546579286, - "plot_longitude": 10.689894177886018, + "plot_latitude": 53.871000177412945, + "plot_longitude": 10.69012637234122, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [10.689894177886018, 53.87097546579286] + "coordinates": [10.69012637234122, 53.871000177412945] } }, { @@ -87118,13 +87118,13 @@ "singlegenome_species": "Salmonella enterica", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 53.871021456505389, - "plot_longitude": 10.68986365188719, + "plot_latitude": 53.870870916893196, + "plot_longitude": 10.690245511891918, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [10.68986365188719, 53.871021456505389] + "coordinates": [10.690245511891918, 53.870870916893196] } }, { @@ -87156,13 +87156,13 @@ "singlegenome_species": "Salmonella enterica", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 53.870885021217617, - "plot_longitude": 10.690021612569415, + "plot_latitude": 53.871089237416165, + "plot_longitude": 10.689969595773002, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [10.690021612569415, 53.870885021217617] + "coordinates": [10.689969595773002, 53.871089237416165] } }, { @@ -87194,13 +87194,13 @@ "singlegenome_species": "Salmonella enterica", "genome_type": "chromosome", "data_type": "raw", - 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"singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 44.899058602404189, - "plot_longitude": 6.6149965956928281, + "plot_latitude": 44.898999870717226, + "plot_longitude": 6.6149671948243807, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [6.614996595692828, 44.899058602404189] + "coordinates": [6.614967194824381, 44.898999870717226] } }, { @@ -97796,13 +97796,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 44.898913548934367, - "plot_longitude": 6.6149943439701513, + "plot_latitude": 44.898869630376829, + "plot_longitude": 6.6149275627565034, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [6.614994343970151, 44.898913548934367] + "coordinates": [6.614927562756503, 44.898869630376829] } }, { @@ -97834,13 +97834,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 49.414931388520415, - "plot_longitude": 2.1010425529616561, + "plot_latitude": 49.414898017754467, + "plot_longitude": 2.1008408138654899, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [2.101042552961656, 49.414931388520415] + "coordinates": [2.10084081386549, 49.414898017754467] } }, { @@ -97872,13 +97872,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 49.415024953197239, - "plot_longitude": 2.1009510524628543, + "plot_latitude": 49.414970812898837, + "plot_longitude": 2.1009437027175974, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [2.100951052462854, 49.415024953197239] + "coordinates": [2.100943702717597, 49.414970812898837] } }, { @@ -97910,13 +97910,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 49.414957243253269, - "plot_longitude": 2.1009425626140974, + "plot_latitude": 49.414859284256316, + "plot_longitude": 2.1011502817136702, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [2.100942562614097, 49.414957243253269] + "coordinates": [2.10115028171367, 49.414859284256316] } }, { @@ -97948,13 +97948,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 48.75797770305509, - "plot_longitude": 16.651102782342782, + "plot_latitude": 48.757954797868869, + "plot_longitude": 16.651232054286343, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [16.651102782342782, 48.75797770305509] + "coordinates": [16.651232054286343, 48.757954797868869] } }, { @@ -97986,13 +97986,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 48.757893938739592, - "plot_longitude": 16.651045973494806, + "plot_latitude": 48.757989033983911, + "plot_longitude": 16.651115665970504, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [16.651045973494806, 48.757893938739592] + "coordinates": [16.651115665970504, 48.757989033983911] } }, { @@ -98024,13 +98024,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 56.450067316831522, - "plot_longitude": 9.3999857696471594, + "plot_latitude": 56.44999946348657, + "plot_longitude": 9.3998716748249915, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [9.399985769647159, 56.450067316831522] + "coordinates": [9.399871674824992, 56.44999946348657] } }, { @@ -98062,13 +98062,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 55.816037954850046, - "plot_longitude": 9.9251358361243405, + "plot_latitude": 55.815997845435007, + "plot_longitude": 9.9249581223536669, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [9.92513583612434, 55.816037954850046] + "coordinates": [9.924958122353667, 55.815997845435007] } }, { @@ -98100,13 +98100,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 51.499864646516158, - "plot_longitude": 12.050025106663282, + "plot_latitude": 51.500047755728929, + "plot_longitude": 12.049981091661273, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [12.050025106663282, 51.499864646516158] + "coordinates": [12.049981091661273, 51.500047755728929] } }, { @@ -98138,13 +98138,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 51.500000858232397, - "plot_longitude": 12.050025810735397, + "plot_latitude": 51.500094345738539, + "plot_longitude": 12.050093263541253, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [12.050025810735397, 51.500000858232397] + "coordinates": [12.050093263541253, 51.500094345738539] } }, { @@ -98176,13 +98176,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 51.500114333846369, - "plot_longitude": 12.049894260196414, + "plot_latitude": 51.500048431149118, + "plot_longitude": 12.050125087031779, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [12.049894260196414, 51.500114333846369] + "coordinates": [12.050125087031779, 51.500048431149118] } }, { @@ -98214,13 +98214,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 51.500018002029222, - "plot_longitude": 12.049865114650244, + "plot_latitude": 51.500042288046522, + "plot_longitude": 12.049946839491117, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [12.049865114650244, 51.500018002029222] + "coordinates": [12.049946839491117, 51.500042288046522] } }, { @@ -98252,13 +98252,13 @@ "singlegenome_species": "Yersinia pestis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 51.500004709316705, - "plot_longitude": 12.050020362516586, + "plot_latitude": 51.500057191444569, + "plot_longitude": 12.049978416476671, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [12.050020362516586, 51.500004709316705] + "coordinates": [12.049978416476671, 51.500057191444569] } }, { @@ -98290,13 +98290,13 @@ "singlegenome_species": "Brucella melitensis", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 43.789016308632377, - "plot_longitude": 12.860996899256477, + "plot_latitude": 43.789105954570147, + "plot_longitude": 12.861114407387598, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [12.860996899256477, 43.789016308632377] + "coordinates": [12.861114407387598, 43.789105954570147] } }, { @@ -98328,13 +98328,13 @@ "singlegenome_species": "Xanthomonas citri pv. citri", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": -7.2299012719726292, - "plot_longitude": 109.71994940871099, + "plot_latitude": -7.2299349068842798, + "plot_longitude": 109.71984559321074, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [109.719949408710988, -7.229901271972629] + "coordinates": [109.719845593210735, -7.22993490688428] } }, { @@ -98366,13 +98366,13 @@ "singlegenome_species": "Xanthomonas citri pv. citri", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 25.579988726350987, - "plot_longitude": 91.630103140176885, + "plot_latitude": 25.579913248304941, + "plot_longitude": 91.630105389879617, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [91.630103140176885, 25.579988726350987] + "coordinates": [91.630105389879617, 25.579913248304941] } }, { @@ -98404,13 +98404,13 @@ "singlegenome_species": "Xanthomonas citri pv. citri", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": -7.2301203021769798, - "plot_longitude": 109.72014448962435, + "plot_latitude": -7.2301670947985581, + "plot_longitude": 109.72006976495416, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [109.720144489624346, -7.23012030217698] + "coordinates": [109.720069764954161, -7.230167094798558] } }, { @@ -98442,13 +98442,13 @@ "singlegenome_species": "Xanthomonas citri pv. citri", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 23.999955798629404, - "plot_longitude": 90.000003632242311, + "plot_latitude": 23.999849306010429, + "plot_longitude": 89.999986480612904, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [90.000003632242311, 23.999955798629404] + "coordinates": [89.999986480612904, 23.999849306010429] } }, { @@ -98480,13 +98480,13 @@ "singlegenome_species": "Xanthomonas citri pv. citri", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 22.000075689415823, - "plot_longitude": 78.999863340510871, + "plot_latitude": 21.999887681675574, + "plot_longitude": 79.000051252811772, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [78.999863340510871, 22.000075689415823] + "coordinates": [79.000051252811772, 21.999887681675574] } }, { @@ -98518,13 +98518,13 @@ "singlegenome_species": "Xanthomonas citri pv. citri", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 16.499956061137731, - "plot_longitude": 122.19992299800242, + "plot_latitude": 16.500001806752405, + "plot_longitude": 122.19997820342361, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [122.199922998002421, 16.499956061137731] + "coordinates": [122.199978203423612, 16.500001806752405] } }, { @@ -98556,13 +98556,13 @@ "singlegenome_species": "Xanthomonas citri pv. citri", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": -7.22996597808599, - "plot_longitude": 109.71996145894525, + "plot_latitude": -7.2301054572832637, + "plot_longitude": 109.71988160156042, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [109.719961458945249, -7.22996597808599] + "coordinates": [109.719881601560417, -7.230105457283264] } }, { @@ -98594,13 +98594,13 @@ "singlegenome_species": "Xanthomonas citri pv. citri", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 15.000050536462821, - "plot_longitude": 119.99996598528659, + "plot_latitude": 15.000155421248657, + "plot_longitude": 119.99996774807845, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [119.999965985286593, 15.000050536462821] + "coordinates": [119.999967748078447, 15.000155421248657] } }, { @@ -98632,13 +98632,13 @@ "singlegenome_species": "Xanthomonas citri pv. citri", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 24.550002596162177, - "plot_longitude": 101.45012110457985, + "plot_latitude": 24.550180705861653, + "plot_longitude": 101.44984484629506, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [101.45012110457985, 24.550002596162177] + "coordinates": [101.449844846295065, 24.550180705861653] } }, { @@ -98670,13 +98670,13 @@ "singlegenome_species": "Xanthomonas citri pv. citri", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 13.330077836886241, - "plot_longitude": 144.72993798281288, + "plot_latitude": 13.329892733444526, + "plot_longitude": 144.72992949579151, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [144.729937982812885, 13.330077836886241] + "coordinates": [144.729929495791509, 13.329892733444526] } }, { @@ -98708,13 +98708,13 @@ "singlegenome_species": "Xanthomonas citri pv. citri", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": 26.669924939131885, - "plot_longitude": 88.019933289166516, + "plot_latitude": 26.670033029843569, + "plot_longitude": 88.020033790798976, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [88.019933289166516, 26.669924939131885] + "coordinates": [88.020033790798976, 26.670033029843569] } }, { @@ -98746,13 +98746,13 @@ "singlegenome_species": "Xanthomonas citri pv. citri", "genome_type": "chromosome", "data_type": "raw", - "plot_latitude": -20.30021200372282, - "plot_longitude": 57.599976744637615, + "plot_latitude": -20.299833834553223, + "plot_longitude": 57.599961484346736, "marker-color": "#D3498E" }, "geometry": { "type": "Point", - "coordinates": [57.599976744637615, -20.30021200372282] + "coordinates": [57.599961484346736, -20.299833834553223] } } ] From e9123c3264b52a9795796fde6dadd0ecb74075e3 Mon Sep 17 00:00:00 2001 From: DianaSpurite <112383244+DianaSpurite@users.noreply.github.com> Date: Mon, 9 Oct 2023 12:49:53 +0200 Subject: [PATCH 11/16] Update ancientsinglegenome-hostassociated_libraries.tsv All suggestions addressed --- ...tsinglegenome-hostassociated_libraries.tsv | 50 +++++++++---------- 1 file changed, 25 insertions(+), 25 deletions(-) diff --git a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv index 1d1d6dd83..4eec719c7 100644 --- a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv +++ b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv @@ -2865,25 +2865,25 @@ Campos2023 2023 10.1038/s41467-023-39950-z HERB_1922 SRA PRJNA883598 SRS15248965 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1946 SRA PRJNA883598 SRS15248966 HERB_1946 double Unknown none NextSeq 500 SINGLE WGS 10729826 SRR21721650 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/050/SRR21721650/SRR21721650.fastq.gz f31a22f48c35afdba9cfbd2d6f87dd73 311169565 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1963 SRA PRJNA883598 SRS15248957 HERB_1963 double PfuTurbo Cx Hotstart DNA none NextSeq 500 SINGLE WGS 4107994 SRR21721659 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/059/SRR21721659/SRR21721659.fastq.gz 718980e28d0c4dc91bd52d1efbc9f70a 139054986 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1974 SRA PRJNA883598 SRS15248958 HERB_1974 double Unknown none NextSeq 500 SINGLE WGS 9256767 SRR21721658 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/058/SRR21721658/SRR21721658.fastq.gz e4530fe1bb2ee93f38c728edf4283d3c 199004045 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046399 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046399/DRR046399.fastq.gz 59098fe5c2d339f49a29f62bb581df0d 3031799168 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046405 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046405/DRR046405.fastq.gz 73f76a8c76f4548200740792cec3e80f 1480013579 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R1 double Unknown none Illumina MiSeq PAIRED WGS 135268 DRR046406 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046406/DRR046406.fastq.gz 37c506c70b5f4384eac3daf49bbf1806 13168706 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R2 double Unknown none Illumina MiSeq PAIRED WGS 135268 DRR046407 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046407/DRR046407.fastq.gz b08daf33376d9b8769638c68ef9e1624 14586872 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R1 double Unknown none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046408 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046408/DRR046408.fastq.gz 792187bcc4f5a0837c33bfa9bcd45ff7 25135887359 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R2 double Unknown none Illumina MiSeq PAIRED WGS 77847 DRR046411 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046411/DRR046411.fastq.gz a185e6ef0736d5798b73d57eade9aefe 8570877 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046402 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046402/DRR046402.fastq.gz 251cfd9c110f0c258b92986757c5e08e 2236884763 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046398 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046398/DRR046398.fastq.gz dd07acfd074d7ab3de3a737a11a02bbf 2923006982 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046400 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046400/DRR046400.fastq.gz 9baaa4283c72e838b97cec348101b1e6 2739068719 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046401 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046401/DRR046401.fastq.gz 2c7dd699fe0ed1044b150de785c8ac16 2864519935 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R2 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046403 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046403/DRR046403.fastq.gz 05f383ec42a1d9c5d73e15c91b867904 2312625893 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R1 double Unknown none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046404 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046404/DRR046404.fastq.gz 4589fb0baa96aee3f653d2e6de17e5fd 1438715827 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R2 double Unknown none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046409 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046409/DRR046409.fastq.gz c66e84985b2b86e506713a055303f3fc 25985687100 -Hodgkins2023 2023 10.1007/s13313-023-00936-7 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R1 double Unknown none Illumina MiSeq PAIRED WGS 77847 DRR046410 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046410/DRR046410.fastq.gz 374b027632e96e155944a5ffff376fc3 7809572 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 SINGLE Targeted-Capture 163 ERR1937826 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/006/ERR1937826/ERR1937826.fastq.gz 4028690b02008c7d6934e4a399a3c324 8498 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 PAIRED Targeted-Capture 76673447 ERR1937833 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_2.fastq.gz 9f5d8938ecfab81ff4b06cf5b85ecd84;9b0a31ebf902f6749b3d2bb66fe98583 3888369913;4105585278 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 SINGLE Targeted-Capture 5422 ERR1937825 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937825/ERR1937825.fastq.gz a0b9ad0f50ea8d3e84968e1a6b48a34f 196674 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R2 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046399 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046399/DRR046399.fastq.gz 59098fe5c2d339f49a29f62bb581df0d 3031799168 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R2 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046405 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046405/DRR046405.fastq.gz 73f76a8c76f4548200740792cec3e80f 1480013579 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R1 double HotStarTaq DNA Polymerase DNA none Illumina MiSeq PAIRED WGS 135268 DRR046406 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046406/DRR046406.fastq.gz 37c506c70b5f4384eac3daf49bbf1806 13168706 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R2 double HotStarTaq DNA Polymerase none Illumina MiSeq PAIRED WGS 135268 DRR046407 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046407/DRR046407.fastq.gz b08daf33376d9b8769638c68ef9e1624 14586872 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R1 double HotStarTaq DNA Polymerase none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046408 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046408/DRR046408.fastq.gz 792187bcc4f5a0837c33bfa9bcd45ff7 25135887359 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R2 double HotStarTaq DNA Polymerase none Illumina MiSeq PAIRED WGS 77847 DRR046411 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046411/DRR046411.fastq.gz a185e6ef0736d5798b73d57eade9aefe 8570877 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R1 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046402 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046402/DRR046402.fastq.gz 251cfd9c110f0c258b92986757c5e08e 2236884763 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R1 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046398 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046398/DRR046398.fastq.gz dd07acfd074d7ab3de3a737a11a02bbf 2923006982 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R1 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046400 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046400/DRR046400.fastq.gz 9baaa4283c72e838b97cec348101b1e6 2739068719 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R2 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046401 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046401/DRR046401.fastq.gz 2c7dd699fe0ed1044b150de785c8ac16 2864519935 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R2 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046403 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046403/DRR046403.fastq.gz 05f383ec42a1d9c5d73e15c91b867904 2312625893 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R1 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046404 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046404/DRR046404.fastq.gz 4589fb0baa96aee3f653d2e6de17e5fd 1438715827 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R2 double HotStarTaq DNA Polymerase none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046409 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046409/DRR046409.fastq.gz c66e84985b2b86e506713a055303f3fc 25985687100 +Hodgkins2023 2023 10.1007/s13313-023-00936-7 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R1 double HotStarTaq DNA Polymerase none Illumina MiSeq PAIRED WGS 77847 DRR046410 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046410/DRR046410.fastq.gz 374b027632e96e155944a5ffff376fc3 7809572 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 163 ERR1937826 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/006/ERR1937826/ERR1937826.fastq.gz 4028690b02008c7d6934e4a399a3c324 8498 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 76673447 ERR1937833 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_2.fastq.gz 9f5d8938ecfab81ff4b06cf5b85ecd84;9b0a31ebf902f6749b3d2bb66fe98583 3888369913;4105585278 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 5422 ERR1937825 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937825/ERR1937825.fastq.gz a0b9ad0f50ea8d3e84968e1a6b48a34f 196674 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE WGS 21 ERR1937828 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/008/ERR1937828/ERR1937828.fastq.gz 0853f9b447d7b2d3ea74c10e8e7b698a 882 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double AmpliTaq Gold DNA half-udg Illumina HiSeq 2500 PAIRED Targeted-Capture 52435610 ERR1937834 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_2.fastq.gz 8bdc8dc708983ac9334f59ff5d3bca09;9b02c90be8f45c0a9bdcb138459bdd64 2172525415;2376886625 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 52435610 ERR1937834 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_2.fastq.gz 8bdc8dc708983ac9334f59ff5d3bca09;9b02c90be8f45c0a9bdcb138459bdd64 2172525415;2376886625 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE WGS 20404 ERR1937827 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/007/ERR1937827/ERR1937827.fastq.gz 6413c8cb99df1ce1762913cadf28329c 537498 Hodgkins2023 2023 10.1007/s13313-023-00936-7 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 2_paired_fastq double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 44375613 ERR1937835 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_2.fastq.gz 227dbeb7889d5b4e2f5188c56d079576;d0d9ee382a5ad825a4431ebfad77ba9f 2421609326;2479467479 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 807 ERR1942918 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1942918/ERR1942918.fastq.gz 8c002eac0175550cd4e5fd966261b50c 26359 @@ -2973,9 +2973,9 @@ Hodgkins2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS425 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double AccuPrime Pfx DNA none HiSeq X Ten SINGLE WGS 26132707 ERR3828725 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/005/ERR3828725/ERR3828725.fastq.gz bdbd5c57583dd407cfb4fd238f65a64e 1141752081 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 191158993 ERR3841646 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/006/ERR3841646/ERR3841646.fastq.gz ad40e5810f4cade26206881f064d781a 8028301308 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 7930905 ERR3841647 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/007/ERR3841647/ERR3841647.fastq.gz 59264a85b271b4cc44ece2e409ed6257 329376589 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha-UC12-12-Tooth ENA PRJEB37726 ERS4421181 SC79-L1101 single AmpliTaq Gold DNA half-udg HiSeq X Ten PAIRED WGS 285113997 ERR4017942 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_2.fastq.gz 818b384816f44c7b1879294fd37bd299;0d2e65636f7a46edf753df2e68dd8a5b 18195979831;21200990407 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha-UC12-24-Tooth ENA PRJEB37726 ERS4421183 SC79-L1096 single AmpliTaq Gold DNA half-udg HiSeq X Ten PAIRED WGS 283637918 ERR4017944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_2.fastq.gz 8c7a2105a5d34c1160ea68cc6c459a7f;9365adbf8f8538a7a63631f1b3e56bda 18392091676;21164798356 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha-UC8-8168-Tooth ENA PRJEB37726 ERS4421185 SC79-L1099 single AmpliTaq Gold DNA half-udg HiSeq X Ten PAIRED WGS 255728754 ERR4017946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_2.fastq.gz c931ada4db74d678bc82e71dad544556;e648c62aaad77dd722f482cfd6f68d0e 16428825487;18295596682 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha-UC12-12-Tooth ENA PRJEB37726 ERS4421181 SC79-L1101 single Unknown half-udg HiSeq X Ten PAIRED WGS 285113997 ERR4017942 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_2.fastq.gz 818b384816f44c7b1879294fd37bd299;0d2e65636f7a46edf753df2e68dd8a5b 18195979831;21200990407 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha-UC12-24-Tooth ENA PRJEB37726 ERS4421183 SC79-L1096 single Unknown half-udg HiSeq X Ten PAIRED WGS 283637918 ERR4017944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_2.fastq.gz 8c7a2105a5d34c1160ea68cc6c459a7f;9365adbf8f8538a7a63631f1b3e56bda 18392091676;21164798356 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha-UC8-8168-Tooth ENA PRJEB37726 ERS4421185 SC79-L1099 single Unknown half-udg HiSeq X Ten PAIRED WGS 255728754 ERR4017946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_2.fastq.gz c931ada4db74d678bc82e71dad544556;e648c62aaad77dd722f482cfd6f68d0e 16428825487;18295596682 Hodgkins2023 2023 10.1007/s13313-023-00936-6 El_Yaral-Bone SRA PRJNA244165 SRS592075 sample_64 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 50916301 SRR1238559 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_2.fastq.gz f62e1e3dd90fb7fd0324e920f15ab8bd;b635c5da56ca1b3dd185678c9f9df508 3713855268;3742735134 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chiribaya_Alta-Bone SRA PRJNA244165 SRS591994 sample_54 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 80406577 SRR1238558 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_2.fastq.gz 72ade0f81eed372eae9fb927a484aa44;5f1fa7e6729773322b52903151f03192 5821824690;5839496681 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double KAPA HiFi HotStart DNA none Illumina HiSeq 2500 PAIRED WGS 12285216 SRR1298750 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_2.fastq.gz 0a15035340b0c7035d3bb909880b7b0e;0922a0583a8f80ec1508ad759179176f 986232779;962732023 @@ -2983,9 +2983,9 @@ Hodgkins2023 2023 10.1007/s13313-023-00936-6 Peru-NA42-Bone SRA PRJNA246597 SRS6 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Peru-NA42-Bone SRA PRJNA246597 SRS620295 NA42 double KAPA HiFi HotStart DNA full-udg Illumina HiSeq 2500 PAIRED WGS 18730377 SRR1314214 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_2.fastq.gz d251b55d54eba0b090678c137b7db1a2;3f080f16f1ad832a0a19b532e0f3461f 1571141325;1542055871 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double KAPA HiFi HotStart DNA none Illumina HiSeq 2500 PAIRED WGS 22453782 SRR1314212 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_2.fastq.gz 2d98d878adca254a59847145e4714b3e;25bf14d82da531b60a3ca430b90877f4 1871792459;1847705551 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 5673426 SRR5169886 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_2.fastq.gz 990dd87c0889dfb683b63a81547e18ff;9920fbe01c61b92ba8b7c655dda5e6ea 371088934;370621153 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 SINGLE Unknown 11699427 SRR5169887 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/007/SRR5169887/SRR5169887.fastq.gz 0554a6c3520470fed11f5859dcf6ff60 654473091 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_BAM double Platinum Taq DNA-Polymerase High Fidelity none NextSeq 500 SINGLE Unknown 850652 SRR5182352 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/002/SRR5182352/SRR5182352.fastq.gz cacc950730273faf12248a8cf993d847 22154218 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 SINGLE Unknown 5047103 SRR5169885 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/005/SRR5169885/SRR5169885.fastq.gz e738d5fc9710f7d66bbd52398aef88ee 303750743 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 11699427 SRR5169887 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/007/SRR5169887/SRR5169887.fastq.gz 0554a6c3520470fed11f5859dcf6ff60 654473091 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_BAM double Platinum Taq DNA-Polymerase High Fidelity none NextSeq 500 PAIRED Unknown 850652 SRR5182352 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/002/SRR5182352/SRR5182352.fastq.gz cacc950730273faf12248a8cf993d847 22154218 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 5047103 SRR5169885 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/005/SRR5169885/SRR5169885.fastq.gz e738d5fc9710f7d66bbd52398aef88ee 303750743 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 14110398 SRR5169888 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_2.fastq.gz dbb0c55e9c1da142301d4bdca8dde663;d17973f6ff1784e11a00e13cb9963253 918308388;927811702 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Gniezno-Tooth SRA PRJNA354503 SRS1815300 PCA0162 single AmpliTaq Gold DNA none Illumina Genome Analyzer II SINGLE WGS 6594634 SRR5047069 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/009/SRR5047069/SRR5047069.fastq.gz 6df299e1a545cb4a7af8bccc6645696f 441544945 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Punta_Candelero-Tooth SRA PRJNA557308 SRS5212084 PC-119-WGE double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 13553081 SRR9898505 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR989/005/SRR9898505/SRR9898505.fastq.gz 5337cb2a6102a497dda11a6381238cb6 567421190 \ No newline at end of file +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Punta_Candelero-Tooth SRA PRJNA557308 SRS5212084 PC-119-WGE double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 13553081 SRR9898505 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR989/005/SRR9898505/SRR9898505.fastq.gz 5337cb2a6102a497dda11a6381238cb6 567421190 From 7e27523493c6383e135a39960c453e4c58d2bcf6 Mon Sep 17 00:00:00 2001 From: DianaSpurite <112383244+DianaSpurite@users.noreply.github.com> Date: Mon, 9 Oct 2023 13:40:04 +0200 Subject: [PATCH 12/16] Update ancientsinglegenome-hostassociated_libraries.tsv --- ...tsinglegenome-hostassociated_libraries.tsv | 28 +++++++++---------- 1 file changed, 14 insertions(+), 14 deletions(-) diff --git a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv index 4eec719c7..c5c515899 100644 --- a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv +++ b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv @@ -2865,20 +2865,20 @@ Campos2023 2023 10.1038/s41467-023-39950-z HERB_1922 SRA PRJNA883598 SRS15248965 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1946 SRA PRJNA883598 SRS15248966 HERB_1946 double Unknown none NextSeq 500 SINGLE WGS 10729826 SRR21721650 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/050/SRR21721650/SRR21721650.fastq.gz f31a22f48c35afdba9cfbd2d6f87dd73 311169565 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1963 SRA PRJNA883598 SRS15248957 HERB_1963 double PfuTurbo Cx Hotstart DNA none NextSeq 500 SINGLE WGS 4107994 SRR21721659 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/059/SRR21721659/SRR21721659.fastq.gz 718980e28d0c4dc91bd52d1efbc9f70a 139054986 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1974 SRA PRJNA883598 SRS15248958 HERB_1974 double Unknown none NextSeq 500 SINGLE WGS 9256767 SRR21721658 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/058/SRR21721658/SRR21721658.fastq.gz e4530fe1bb2ee93f38c728edf4283d3c 199004045 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R2 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046399 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046399/DRR046399.fastq.gz 59098fe5c2d339f49a29f62bb581df0d 3031799168 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R2 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046405 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046405/DRR046405.fastq.gz 73f76a8c76f4548200740792cec3e80f 1480013579 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R1 double HotStarTaq DNA Polymerase DNA none Illumina MiSeq PAIRED WGS 135268 DRR046406 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046406/DRR046406.fastq.gz 37c506c70b5f4384eac3daf49bbf1806 13168706 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R2 double HotStarTaq DNA Polymerase none Illumina MiSeq PAIRED WGS 135268 DRR046407 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046407/DRR046407.fastq.gz b08daf33376d9b8769638c68ef9e1624 14586872 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R1 double HotStarTaq DNA Polymerase none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046408 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046408/DRR046408.fastq.gz 792187bcc4f5a0837c33bfa9bcd45ff7 25135887359 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R2 double HotStarTaq DNA Polymerase none Illumina MiSeq PAIRED WGS 77847 DRR046411 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046411/DRR046411.fastq.gz a185e6ef0736d5798b73d57eade9aefe 8570877 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R1 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046402 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046402/DRR046402.fastq.gz 251cfd9c110f0c258b92986757c5e08e 2236884763 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R1 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046398 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046398/DRR046398.fastq.gz dd07acfd074d7ab3de3a737a11a02bbf 2923006982 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R1 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046400 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046400/DRR046400.fastq.gz 9baaa4283c72e838b97cec348101b1e6 2739068719 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R2 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046401 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046401/DRR046401.fastq.gz 2c7dd699fe0ed1044b150de785c8ac16 2864519935 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R2 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046403 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046403/DRR046403.fastq.gz 05f383ec42a1d9c5d73e15c91b867904 2312625893 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R1 double HotStarTaq DNA Polymerase none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046404 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046404/DRR046404.fastq.gz 4589fb0baa96aee3f653d2e6de17e5fd 1438715827 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R2 double HotStarTaq DNA Polymerase none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046409 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046409/DRR046409.fastq.gz c66e84985b2b86e506713a055303f3fc 25985687100 -Hodgkins2023 2023 10.1007/s13313-023-00936-7 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R1 double HotStarTaq DNA Polymerase none Illumina MiSeq PAIRED WGS 77847 DRR046410 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046410/DRR046410.fastq.gz 374b027632e96e155944a5ffff376fc3 7809572 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046399 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046399/DRR046399.fastq.gz 59098fe5c2d339f49a29f62bb581df0d 3031799168 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046405 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046405/DRR046405.fastq.gz 73f76a8c76f4548200740792cec3e80f 1480013579 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R1 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 135268 DRR046406 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046406/DRR046406.fastq.gz 37c506c70b5f4384eac3daf49bbf1806 13168706 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R2 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 135268 DRR046407 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046407/DRR046407.fastq.gz b08daf33376d9b8769638c68ef9e1624 14586872 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R1 double HotStarTaq DNA none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046408 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046408/DRR046408.fastq.gz 792187bcc4f5a0837c33bfa9bcd45ff7 25135887359 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R2 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 77847 DRR046411 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046411/DRR046411.fastq.gz a185e6ef0736d5798b73d57eade9aefe 8570877 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046402 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046402/DRR046402.fastq.gz 251cfd9c110f0c258b92986757c5e08e 2236884763 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046398 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046398/DRR046398.fastq.gz dd07acfd074d7ab3de3a737a11a02bbf 2923006982 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046400 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046400/DRR046400.fastq.gz 9baaa4283c72e838b97cec348101b1e6 2739068719 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046401 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046401/DRR046401.fastq.gz 2c7dd699fe0ed1044b150de785c8ac16 2864519935 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046403 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046403/DRR046403.fastq.gz 05f383ec42a1d9c5d73e15c91b867904 2312625893 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046404 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046404/DRR046404.fastq.gz 4589fb0baa96aee3f653d2e6de17e5fd 1438715827 +Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R2 double HotStarTaq DNA none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046409 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046409/DRR046409.fastq.gz c66e84985b2b86e506713a055303f3fc 25985687100 +Hodgkins2023 2023 10.1007/s13313-023-00936-7 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R1 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 77847 DRR046410 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046410/DRR046410.fastq.gz 374b027632e96e155944a5ffff376fc3 7809572 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 163 ERR1937826 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/006/ERR1937826/ERR1937826.fastq.gz 4028690b02008c7d6934e4a399a3c324 8498 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 76673447 ERR1937833 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_2.fastq.gz 9f5d8938ecfab81ff4b06cf5b85ecd84;9b0a31ebf902f6749b3d2bb66fe98583 3888369913;4105585278 Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 5422 ERR1937825 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937825/ERR1937825.fastq.gz a0b9ad0f50ea8d3e84968e1a6b48a34f 196674 From 96b3786dfc5b19ee400cb15a5f243ecf50188085 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Alex=20H=C3=BCbner?= Date: Mon, 4 Dec 2023 11:25:40 +0100 Subject: [PATCH 13/16] Change DOIs Change publication DOI to Hodgkins2023 manuscript and sample age DOIs to the original publication reported in Hodgkins2023 Suppl. Data S2 --- ...entsinglegenome-hostassociated_samples.tsv | 76 +++++++++---------- 1 file changed, 38 insertions(+), 38 deletions(-) diff --git a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv index d9ab3779d..3f63d1775 100644 --- a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv +++ b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv @@ -620,41 +620,41 @@ Campos2023 2023 10.1038/s41467-023-39950-z Yunnan 24.55 101.45 China HERB_1922 C Campos2023 2023 10.1038/s41467-023-39950-z Tlofofo 13.33 144.73 Guam HERB_1946 Citrus sp. 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248966 Campos2023 2023 10.1038/s41467-023-39950-z Sanichare 26.67 88.02 Nepal HERB_1963 Citrus medica 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248957 Campos2023 2023 10.1038/s41467-023-39950-z Mauritius -20.3 57.6 Mauritius HERB_1974 Citrus sp. 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248958 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A1-Tooth Homo sapiens 3000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021185 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A2-Tooth Homo sapiens 3000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021186 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNIII-Tooth Homo sapiens 3800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1647163 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNII-Tooth Homo sapiens 3800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1660772 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Haunstetten Unterer Talweg 85 48.318 10.891 Germany Augsburg-Tooth Homo sapiens 4200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB19335 ERS1892067 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-011-Tooth Homo sapiens 1200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 PRJEB86458 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-004-Tooth Homo sapiens 1200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906198 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Gran Canaria 27.92 -15.547 Spain GranCanaria-005-Tooth Homo sapiens 1000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906199 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Gran Canaria 27.92 -15.547 Spain GranCanaria-008-Tooth Homo sapiens 1000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906202 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-012-Tooth Homo sapiens 1300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906203 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife 28.291 -16.629 Spain Tenerife-013-Tooth Homo sapiens 1300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906204 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Teposcolula-Yucundaa; Mixteca Alta region, Oaxaca 17.502 -97.467 Mexico Tepos_35-Tooth Homo sapiens 400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23438 ERS2020227 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Cueva de los Lagos 41.962 -1.993 Spain Cueva_de_los_Lagos-Tooth Homo sapiens 4000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23467 ERS2059523 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Yámana 54.933 -67.616 Chile Yámana-Tooth Homo sapiens 800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24629 ERS2160137 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Vác 47.784 19.135 Hungary Vác-Mummy-Tissue Homo sapiens 200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tissue chromosome ENA raw PRJEB7454 ERS563409 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Maderas Enco -18.478 -70.312 Chile Chinchorro-Mummy-Bone Homo sapiens 200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793932 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Piedra Gorda 23.6 -109.6 Mexico Pericues-BC28-Bone Homo sapiens 550 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793942 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 l’Observance in Marseille 43.296 5.369 France Marseille-Tooth Homo sapiens 200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB12163 ERS1020860 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Saints Màrtirs Just i Pastor, Barcelona 41.387 2.168 Spain Barcelona-3031-Tooth Homo sapiens 1400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB13664 ERS1124787 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Saint-Laurent-de-la-Cabrerisse 43.084 2.7 France SLC-France-Tooth Homo sapiens 1300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24499 ERS2865271 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Karlova, Tartu 58.371 26.732 Estonia Karolva-Tooth Homo sapiens 4200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB32786 ERS3568107 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle 29.9 31.2 Egypt Abusir1655-Tooth Homo sapiens 3100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635957 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1595-Tooth Homo sapiens 2900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635963 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1668-Tooth Homo sapiens 2200 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635986,ERS3636003 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1671-Tooth Homo sapiens 2100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636004 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1607-Tooth Homo sapiens 1900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636032 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Dacaozi site, Pingan county, Qinghai province 36.5 102.108 China Dacaozi-Tooth Homo sapiens 1900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36297 ERS4255307 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Riga 56.95 24.121 Latvia Riga_Cemetery-Tooth Homo sapiens 300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36413 ERS4266549 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha -13.476 -76.016 Peru Chincha-UC12-12-Tooth Homo sapiens 400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421181 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha -13.476 -76.016 Peru Chincha-UC12-24-Tooth Homo sapiens 400 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421183 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha -13.477 -76.025 Peru Chincha-UC8-8168-Tooth Homo sapiens 300 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421185 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chiribaya Alta, Cemetery 1 -17.635 -71.293 Peru Chiribaya_Alta-Bone Homo sapiens 800 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS591994 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 El Yaral, Cemetery 2 -17.149 -70.924 Peru El_Yaral-Bone Homo sapiens 700 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS592075 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Laguna de los Condores -6.848 -77.698 Peru Peru-NA40-Bone Homo sapiens 1100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620293 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Laguna de los Condores -6.848 -77.698 Peru Peru-NA42-Bone Homo sapiens 1100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620295 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo Bonito, New Mexico 36.06 -107.961 USA Pueblo_Bonito-Tooth Homo sapiens 900 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA353635 SRS1853899 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Gniezno, Wielkopolska 52.54 17.59 Poland Gniezno-Tooth Homo sapiens 1000 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA354503 SRS1815300 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Punta Candelero 18.091 -65.789 Puerto Rico Punta_Candelero-Tooth Homo sapiens 1100 10.1007/s13313-023-00936-6 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA557308 SRS5212084 \ No newline at end of file +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A1-Tooth Homo sapiens 3000 10.1038/jhg.2016.110 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021185 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A2-Tooth Homo sapiens 3000 10.1038/jhg.2016.110 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021186 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNIII-Tooth Homo sapiens 3800 10.1016/j.jasrep.2017.12.025 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1647163 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNII-Tooth Homo sapiens 3800 10.1016/j.jasrep.2017.12.025 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1660772 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Haunstetten Unterer Talweg 85 48.318 10.891 Germany Augsburg-Tooth Homo sapiens 4200 10.1016/j.cub.2017.10.025 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB19335 ERS1892067 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife 28.291 -16.629 Spain Tenerife-011-Tooth Homo sapiens 1200 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 PRJEB86458 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife 28.291 -16.629 Spain Tenerife-004-Tooth Homo sapiens 1200 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906198 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Gran Canaria 27.92 -15.547 Spain GranCanaria-005-Tooth Homo sapiens 1000 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906199 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Gran Canaria 27.92 -15.547 Spain GranCanaria-008-Tooth Homo sapiens 1000 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906202 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife 28.291 -16.629 Spain Tenerife-012-Tooth Homo sapiens 1300 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906203 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife 28.291 -16.629 Spain Tenerife-013-Tooth Homo sapiens 1300 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906204 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Teposcolula-Yucundaa; Mixteca Alta region, Oaxaca 17.502 -97.467 Mexico Tepos_35-Tooth Homo sapiens 400 10.1038/s41559-017-0446-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23438 ERS2020227 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Cueva de los Lagos 41.962 -1.993 Spain Cueva_de_los_Lagos-Tooth Homo sapiens 4000 10.1073/pnas.1717762115 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23467 ERS2059523 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Yámana 54.933 -67.616 Chile Yámana-Tooth Homo sapiens 800 10.1186/s40168-016-0221-y bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24629 ERS2160137 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Vác 47.784 19.135 Hungary Vác-Mummy-Tissue Homo sapiens 200 10.1038/ncomms7717 bacteria Clostridium tetani tissue chromosome ENA raw PRJEB7454 ERS563409 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Maderas Enco -18.478 -70.312 Chile Chinchorro-Mummy-Bone Homo sapiens 200 10.1126/science.aab3884 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793932 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Piedra Gorda 23.6 -109.6 Mexico Pericues-BC28-Bone Homo sapiens 550 10.1126/science.aab3884 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793942 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 l’Observance in Marseille 43.296 5.369 France Marseille-Tooth Homo sapiens 200 10.7554/eLife.12994 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB12163 ERS1020860 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Saints Màrtirs Just i Pastor, Barcelona 41.387 2.168 Spain Barcelona-3031-Tooth Homo sapiens 1400 10.1016/j.chom.2016.05.012 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB13664 ERS1124787 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Saint-Laurent-de-la-Cabrerisse 43.084 2.7 France SLC-France-Tooth Homo sapiens 1300 10.1073/pnas.1812865115 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24499 ERS2865271 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Karlova, Tartu 58.371 26.732 Estonia Karolva-Tooth Homo sapiens 4200 10.1098/rspb.2019.1528 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB32786 ERS3568107 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1655-Tooth Homo sapiens 3100 10.1038/ncomms15694 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635957 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1595-Tooth Homo sapiens 2900 10.1038/ncomms15694 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635963 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1668-Tooth Homo sapiens 2200 10.1038/ncomms15694 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635986,ERS3636003 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1671-Tooth Homo sapiens 2100 10.1038/ncomms15694 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636004 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1607-Tooth Homo sapiens 1900 10.1186/s12915-020-00839-8 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636032 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Dacaozi site, Pingan county, Qinghai province 36.5 102.108 China Dacaozi-Tooth Homo sapiens 1900 10.1371/journal.pone.0060307 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36297 ERS4255307 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Riga 56.95 24.121 Latvia Riga_Cemetery-Tooth Homo sapiens 300 10.1038/s41598-020-71530-9 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36413 ERS4266549 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha -13.476 -76.016 Peru Chincha-UC12-12-Tooth Homo sapiens 400 10.1073/pnas.2005965117 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421181 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha -13.476 -76.016 Peru Chincha-UC12-24-Tooth Homo sapiens 400 10.1073/pnas.2005965117 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421183 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha -13.477 -76.025 Peru Chincha-UC8-8168-Tooth Homo sapiens 300 10.1073/pnas.2005965117 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421185 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chiribaya Alta, Cemetery 1 -17.635 -71.293 Peru Chiribaya_Alta-Bone Homo sapiens 800 10.1038/nature13591 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS591994 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 El Yaral, Cemetery 2 -17.149 -70.924 Peru El_Yaral-Bone Homo sapiens 700 10.1038/nature13591 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS592075 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Laguna de los Condores -6.848 -77.698 Peru Peru-NA40-Bone Homo sapiens 1100 10.1016/j.ajhg.2013.10.002 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620293 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Laguna de los Condores -6.848 -77.698 Peru Peru-NA42-Bone Homo sapiens 1100 10.1016/j.ajhg.2013.10.002 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620295 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pueblo Bonito, New Mexico 36.06 -107.961 USA Pueblo_Bonito-Tooth Homo sapiens 900 10.1371/journal.pone.0060307 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA353635 SRS1853899 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Gniezno, Wielkopolska 52.54 17.59 Poland Gniezno-Tooth Homo sapiens 1000 10.1093/gigascience/gix044 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA354503 SRS1815300 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Punta Candelero 18.091 -65.789 Puerto Rico Punta_Candelero-Tooth Homo sapiens 1100 10.1093/molbev/msz267 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA557308 SRS5212084 From cc118f45045f534dab6de23e774cb3c15a438b6d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Alex=20H=C3=BCbner?= Date: Mon, 4 Dec 2023 13:02:51 +0100 Subject: [PATCH 14/16] Update data DOI and fix library polymerases --- ...tsinglegenome-hostassociated_libraries.tsv | 248 +++++++++--------- 1 file changed, 124 insertions(+), 124 deletions(-) diff --git a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv index c5c515899..2daa79847 100644 --- a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv +++ b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv @@ -2865,127 +2865,127 @@ Campos2023 2023 10.1038/s41467-023-39950-z HERB_1922 SRA PRJNA883598 SRS15248965 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1946 SRA PRJNA883598 SRS15248966 HERB_1946 double Unknown none NextSeq 500 SINGLE WGS 10729826 SRR21721650 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/050/SRR21721650/SRR21721650.fastq.gz f31a22f48c35afdba9cfbd2d6f87dd73 311169565 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1963 SRA PRJNA883598 SRS15248957 HERB_1963 double PfuTurbo Cx Hotstart DNA none NextSeq 500 SINGLE WGS 4107994 SRR21721659 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/059/SRR21721659/SRR21721659.fastq.gz 718980e28d0c4dc91bd52d1efbc9f70a 139054986 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1974 SRA PRJNA883598 SRS15248958 HERB_1974 double Unknown none NextSeq 500 SINGLE WGS 9256767 SRR21721658 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/058/SRR21721658/SRR21721658.fastq.gz e4530fe1bb2ee93f38c728edf4283d3c 199004045 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046399 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046399/DRR046399.fastq.gz 59098fe5c2d339f49a29f62bb581df0d 3031799168 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046405 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046405/DRR046405.fastq.gz 73f76a8c76f4548200740792cec3e80f 1480013579 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R1 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 135268 DRR046406 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046406/DRR046406.fastq.gz 37c506c70b5f4384eac3daf49bbf1806 13168706 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R2 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 135268 DRR046407 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046407/DRR046407.fastq.gz b08daf33376d9b8769638c68ef9e1624 14586872 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R1 double HotStarTaq DNA none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046408 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046408/DRR046408.fastq.gz 792187bcc4f5a0837c33bfa9bcd45ff7 25135887359 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R2 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 77847 DRR046411 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046411/DRR046411.fastq.gz a185e6ef0736d5798b73d57eade9aefe 8570877 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046402 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046402/DRR046402.fastq.gz 251cfd9c110f0c258b92986757c5e08e 2236884763 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046398 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046398/DRR046398.fastq.gz dd07acfd074d7ab3de3a737a11a02bbf 2923006982 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046400 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046400/DRR046400.fastq.gz 9baaa4283c72e838b97cec348101b1e6 2739068719 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046401 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046401/DRR046401.fastq.gz 2c7dd699fe0ed1044b150de785c8ac16 2864519935 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046403 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046403/DRR046403.fastq.gz 05f383ec42a1d9c5d73e15c91b867904 2312625893 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046404 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046404/DRR046404.fastq.gz 4589fb0baa96aee3f653d2e6de17e5fd 1438715827 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R2 double HotStarTaq DNA none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046409 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046409/DRR046409.fastq.gz c66e84985b2b86e506713a055303f3fc 25985687100 -Hodgkins2023 2023 10.1007/s13313-023-00936-7 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R1 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 77847 DRR046410 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046410/DRR046410.fastq.gz 374b027632e96e155944a5ffff376fc3 7809572 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 163 ERR1937826 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/006/ERR1937826/ERR1937826.fastq.gz 4028690b02008c7d6934e4a399a3c324 8498 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 76673447 ERR1937833 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_2.fastq.gz 9f5d8938ecfab81ff4b06cf5b85ecd84;9b0a31ebf902f6749b3d2bb66fe98583 3888369913;4105585278 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 5422 ERR1937825 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937825/ERR1937825.fastq.gz a0b9ad0f50ea8d3e84968e1a6b48a34f 196674 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE WGS 21 ERR1937828 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/008/ERR1937828/ERR1937828.fastq.gz 0853f9b447d7b2d3ea74c10e8e7b698a 882 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 52435610 ERR1937834 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_2.fastq.gz 8bdc8dc708983ac9334f59ff5d3bca09;9b02c90be8f45c0a9bdcb138459bdd64 2172525415;2376886625 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE WGS 20404 ERR1937827 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/007/ERR1937827/ERR1937827.fastq.gz 6413c8cb99df1ce1762913cadf28329c 537498 -Hodgkins2023 2023 10.1007/s13313-023-00936-7 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 2_paired_fastq double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 44375613 ERR1937835 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_2.fastq.gz 227dbeb7889d5b4e2f5188c56d079576;d0d9ee382a5ad825a4431ebfad77ba9f 2421609326;2479467479 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 807 ERR1942918 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1942918/ERR1942918.fastq.gz 8c002eac0175550cd4e5fd966261b50c 26359 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 318125040 ERR2112574 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112574/ERR2112574.fastq.gz d29e8511b8c860889920240560f28963 11592228429 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 320155752 ERR2112575 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112575/ERR2112575.fastq.gz 1c3931ef9c7b3198fd89eed4c4af79aa 11523747356 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 320577112 ERR2112576 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112576/ERR2112576.fastq.gz c01e8e624b5e7e542a6a53060eda2963 11612997118 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 286756923 ERR2112577 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112577/ERR2112577.fastq.gz 1b43fd6bdd9e0f372e0370426e502ae9 10175356811 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 165092355 ERR2112578 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112578/ERR2112578.fastq.gz a546c8d02e34ab7ba9bf9b9b70edc110 6042098938 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-004-Tooth ENA PRJEB86458 ERS1906198 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 32788454 ERR2111944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2111944/ERR2111944.fastq.gz 2268b27c14ddaa9fe8ba1994dca180b7 1476338852 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 83657790 ERR2111947 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2111947/ERR2111947.fastq.gz 28d80ed137a4f2749c8df338f1396296 4616384352 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 84678681 ERR2111948 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2111948/ERR2111948.fastq.gz 2670f6ee30cdb2e9cf25194b1d00352f 4487414231 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 41600057 ERR2111950 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/000/ERR2111950/ERR2111950.fastq.gz 7d2f61ffbc3704b514b1ad49c83cc2ea 2283826200 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42454995 ERR2111951 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2111951/ERR2111951.fastq.gz 166f95e2b9def23d98644c5c37f39841 2239935032 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 46432244 ERR2112075 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112075/ERR2112075.fastq.gz c3058a6ab2a74162e841055c2c9871e7 3315636400 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 41968696 ERR2112076 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112076/ERR2112076.fastq.gz c1f0637d92139b565497ff8eb58dc708 3024212774 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42694502 ERR2112077 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112077/ERR2112077.fastq.gz 527ea4fcb4e247423862d8d65850297f 2971810358 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 56519202 ERR2112078 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112078/ERR2112078.fastq.gz 746c40aa7f5364b424a8a010625ab555 4015798460 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 103034192 ERR2112082 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/002/ERR2112082/ERR2112082.fastq.gz b494900e3eb4faa8fc519510c3d18044 4339155003 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 48006465 ERR2112095 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112095/ERR2112095.fastq.gz aa23291e1ffa281f02cb00424cabca88 2904018843 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 46090647 ERR2112097 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112097/ERR2112097.fastq.gz a3bc3849f6ae72755564f0639badf10b 2763637774 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 34599863 ERR2111945 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2111945/ERR2111945.fastq.gz be2c0610c72a60232d3d2ceacfc45c15 1531332605 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 43607924 ERR2111949 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/009/ERR2111949/ERR2111949.fastq.gz c12312b0e05b7364e4ae34ff58dbed2b 2330733778 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 48025167 ERR2112074 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112074/ERR2112074.fastq.gz 56b44ec8a3f4a84f0e6e52f23a45244f 2650703816 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 51462140 ERR2112079 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/009/ERR2112079/ERR2112079.fastq.gz cb086c299d3dd88bea8b8497712d2f23 3674875735 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 52674925 ERR2112080 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/000/ERR2112080/ERR2112080.fastq.gz 444cfc9e7f1312e42f812bf1e0437f8b 3656995820 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 247085213 ERR2112083 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/003/ERR2112083/ERR2112083.fastq.gz 5e871b7f274fd4045af8ca7a99ba6fb1 12125066589 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 156625959 ERR2112084 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112084/ERR2112084.fastq.gz 1f89e2c52b4811dfcc047ed1ee608b7e 7764413478 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 95745866 ERR2112093 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/003/ERR2112093/ERR2112093.fastq.gz 7bd19b4ef5a6ac548a04fe4e67afc7cc 6033829981 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 97073096 ERR2112094 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112094/ERR2112094.fastq.gz 3d7cae0f6e17f95675644668c8b58c43 5838900641 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 30451552 ERR2185281 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/001/ERR2185281/ERR2185281.fastq.gz ab6526f8ff7e7706029265c64df6ffac 1188674769 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 28674836 ERR2185284 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/004/ERR2185284/ERR2185284.fastq.gz 25cd96b8767c4435b1fa287ffa9a57d9 1206388101 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 86740492 ERR2111946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2111946/ERR2111946.fastq.gz 810b089d785ebd1edbad3a41226ce5ad 4637501739 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 50136895 ERR2112081 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2112081/ERR2112081.fastq.gz 154863c74e9827eb9fee2b3a630ac19e 2230636146 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 37810056 ERR2112091 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2112091/ERR2112091.fastq.gz 9d9ff02519fdb933fe98adbac42996b3 1904292211 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 101242754 ERR2112092 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/002/ERR2112092/ERR2112092.fastq.gz b40662014d1863d723646aecec72da1b 6139469451 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 44839252 ERR2112096 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112096/ERR2112096.fastq.gz a0e40d36ccb46a36986b6396ccbdef39 2801279215 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-013-Tooth ENA PRJEB86458 ERS1906204 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42367542 ERR2112098 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112098/ERR2112098.fastq.gz 405950db4d2dd6088e452d76e574ed6b 2206630410 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 16219915 ERR2185282 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/002/ERR2185282/ERR2185282.fastq.gz ae8291e6f7c8dc421db1c5969b9230e3 681016439 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 187683798 ERR2185283 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/003/ERR2185283/ERR2185283.fastq.gz 96d19ed679b9b9a6c5b601fe840f571e 6382804778 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none NextSeq 500 PAIRED Targeted-Capture 861998 ERR2204611 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2204611/ERR2204611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2204611/ERR2204611_2.fastq.gz e97363c161e90082e6eb8fa53a3b8a58;939c0a52c40cec8b8cefdb38851435ba 39871514;41647617 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none NextSeq 500 PAIRED Targeted-Capture 28118462 ERR2204612 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/002/ERR2204612/ERR2204612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/002/ERR2204612/ERR2204612_2.fastq.gz ddfc21cae3d74b9d1c80f06f8115a71b;2b337c73947e90b37b4006bfed0e3fb5 1144496374;1271866282 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CUDG double PfuTurbo Cx Hotstart DNA full-udg NextSeq 500 PAIRED Targeted-Capture 2863375 ERR2204613 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2204613/ERR2204613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2204613/ERR2204613_2.fastq.gz c3c2cd5a50992713d7ed50f5b91dd97b;eb94f2bba3435db0075a3b6fda474505 131797035;136207848 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CUDG double PfuTurbo Cx Hotstart DNA full-udg NextSeq 500 PAIRED Targeted-Capture 96106710 ERR2204614 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204614/ERR2204614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204614/ERR2204614_2.fastq.gz cdcbb32ff04e32423a6d04609a70870e;f010594dfbd557e727f45ed8fd262db3 3851279631;4247569192 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none Illumina HiSeq 2000 PAIRED WGS 994328 ERR2204644 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204644/ERR2204644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204644/ERR2204644_2.fastq.gz 73d0b651d0d03c55e2dddbe75d77dd9d;0c02751f3c5e30e5c43e352edc178964 73031399;75636413 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Cueva_de_los_Lagos-Tooth ENA PRJEB23467 ERS2059523 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 179251988 ERR2224078 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR222/008/ERR2224078/ERR2224078.fastq.gz 245587cc316cb175e2eed76a5907d42e 5551553388 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Cueva_de_los_Lagos-Tooth ENA PRJEB23467 ERS2059523 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 1164531241 ERR2225784 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR222/004/ERR2225784/ERR2225784.fastq.gz d028912fb20f3a5c731406ad82d2e363 48849563848 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Yámana-Tooth ENA PRJEB24629 ERS2160137 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 808299942 ERR2270785 fastq_all ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR227/ERR2270785/IPY10.All.fastq.gz 3c32116386822aa24ff2efa67e5d2e94 45202276574 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Vác-Mummy-Tissue ENA PRJEB7454 ERS563409 92-A1 double Unknown none Illumina MiSeq PAIRED WGS 20084713 ERR651004 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_2.fastq.gz 3f07d29738185963f380f637b9b93065;0d96c823b7998af0b2165fe46b7e542e 2984512816;3476815638 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_10 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 75660984 ERR966295 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966295/ERR966295.fastq.gz 3f43def0d896afea489f3c5fccea36c3 3930297733 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_11 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 103486178 ERR966296 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966296/ERR966296.fastq.gz b514bc662c122adb6ac42d5acf3b05f0 5330914571 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_13 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 285814147 ERR966298 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966298/ERR966298.fastq.gz dc75bf256f29ebbd70954d7bd7ab2c9a 16162263061 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_6 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 30343646 ERR966310 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966310/ERR966310.fastq.gz 6efffec6ad1d62ed52e2cc3d3c5a7f43 1416897788 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_8 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 87962797 ERR966312 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966312/ERR966312.fastq.gz 5ceca13c5c30374209d7ea44e40de87c 4175899212 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_12 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 107286297 ERR966297 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966297/ERR966297.fastq.gz ec6261bc595a0d84a6606143492f91ec 5571578708 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_15 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 40472562 ERR966300 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966300/ERR966300.fastq.gz 600dc595ac8de4fe232ca1c00c456fec 2368473624 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_17 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 86611474 ERR966302 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966302/ERR966302.fastq.gz 1d2c52049d8c8302e8d45b83c2ce7f4f 5140536631 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_2 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 58022324 ERR966305 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966305/ERR966305.fastq.gz 9350277d1aafa8c43cec850f9e38f0e1 2756025719 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_20 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 136573362 ERR966306 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966306/ERR966306.fastq.gz 98688aecf3d8b0969298d39010220e23 6672345221 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_3 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 49940208 ERR966307 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966307/ERR966307.fastq.gz ff03f2f79b3c528eb1c98af05a3fad62 2423386088 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_4 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 26872695 ERR966308 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966308/ERR966308.fastq.gz 2557624cd4bd5e82ac3e32fc8fa4ed85 1254939750 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_7 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 94822961 ERR966311 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966311/ERR966311.fastq.gz 871dbd8cd245d22c9cdabc166b9118e5 4496790226 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_1 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 49502893 ERR966294 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966294/ERR966294.fastq.gz a808f03060305f2523287cf004fa29fc 2350014565 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_14 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 23206451 ERR966299 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966299/ERR966299.fastq.gz 4139f9e28a3f01f79f1e8fc6163342ef 1361039728 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_16 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 25867706 ERR966301 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966301/ERR966301.fastq.gz 142744b3e9bb59d960fb7959e5cadd24 1522488144 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_18 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 100755898 ERR966303 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966303/ERR966303.fastq.gz 66be0bbef7e8660498b971e19236b005 5975543012 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_19 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 85601752 ERR966304 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966304/ERR966304.fastq.gz 2377b397bc7659809ba3a3b58c9abdda 5175038658 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_5 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 47945651 ERR966309 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966309/ERR966309.fastq.gz d27e80a6d72a4e6c366a4481847639df 2206834714 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_9 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 98694708 ERR966313 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966313/ERR966313.fastq.gz 9cfcbea3b01094ef1ab7b0bd30f84c5a 4681565044 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 11472673 ERR966440 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966440/ERR966440.fastq.gz 28855b18583116ffa22e1f40fd963278 694295918 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libCAGCTA.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 50343799 ERR966426 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966426/ERR966426.fastq.gz 88d4a682975953ad845683f12590a1d3 2888163703 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double Unknown none Illumina HiSeq 2000 SINGLE WGS 3444716 ERR966430 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966430/ERR966430.fastq.gz 075f7fe98e6ec5cde875bf670cb49c47 201382661 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Marseille-Tooth ENA PRJEB12163 ERS1020860 OBS107_UDG double AccuPrime Pfx DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 14646710 ERR1193532 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1193532/ERR1193532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1193532/ERR1193532_2.fastq.gz 884a4afc0b75b86bbb323f58b80a041c;9e5e2bca98fdf7b541b490f5955a9ad3 1149013961;1150891719 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Marseille-Tooth ENA PRJEB12163 ERS1020860 OBS107 double AccuPrime Pfx DNA full-udg Illumina HiSeq 2000 SINGLE Targeted-Capture 851096 ERR1193537 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1193537/ERR1193537.fastq.gz 864da17f8807ceecad7368caf2c92997 39236628 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Barcelona-3031-Tooth ENA PRJEB13664 ERS1124787 Barcelona3031 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 61845279 ERR1368878 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/008/ERR1368878/ERR1368878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/008/ERR1368878/ERR1368878_2.fastq.gz 095af025dc7f11f79502974aa75e7386;4130f9ec25f3df279f8142845961aadb 4422361795;4446780768 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 SLC-France-Tooth ENA PRJEB24499 ERS2865271 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 203877595 ERR2862150 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/000/ERR2862150/ERR2862150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/000/ERR2862150/ERR2862150_2.fastq.gz a6112d04b304b2375dae6c34033bbc16;acafcc79f3d021db8f3308d9ac935bcf 11059312752;11017819383 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 SLC-France-Tooth ENA PRJEB24499 ERS2865271 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 221791489 ERR2862151 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/001/ERR2862151/ERR2862151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/001/ERR2862151/ERR2862151_2.fastq.gz f80f8e1d0712e6c0f2a65e79acc67ba3;190cc46629e5eda6fef664d6cb80ee3d 11578595157;11538874156 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Karolva-Tooth ENA PRJEB32786 ERS3568107 unspecified single AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Unknown 1140330766 ERR3426230 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR342/000/ERR3426230/ERR3426230.fastq.gz a132e833c23eea070bcaacf5ec544fc4 52616619455 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Karolva-Tooth ENA PRJEB32786 ERS3568107 unspecified single AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Unknown 171457258 ERR3426214 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR342/004/ERR3426214/ERR3426214.fastq.gz b8738de2667671d5a178a72cadfee9c0 5737682401 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir1595-Tooth ENA PRJEB33848 ERS3635963 Abusir1595t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1752726 ERR4374869 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4374869/ERR4374869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4374869/ERR4374869_2.fastq.gz ae15532ee7d7f77e66e514c3aba99136;7a90231a56f5b797c3b57343139ff922 123648672;117691019 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir1671-Tooth ENA PRJEB33848 ERS3636004 Abusir1671t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1782693 ERR4375141 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/001/ERR4375141/ERR4375141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/001/ERR4375141/ERR4375141_2.fastq.gz 5ae99bc0ce03b22aff0d9850f1fde5d3;175c717414a955be4cf03ec799d76262 125757629;120330029 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir1607-Tooth ENA PRJEB33848 ERS3636032 Abusir1607t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1586988 ERR4374914 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/004/ERR4374914/ERR4374914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/004/ERR4374914/ERR4374914_2.fastq.gz 1d77a89866d7447f45292a4dec6658a4;55da618b78bfecc4baa4584293980eb2 110209867;107590188 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir1655-Tooth ENA PRJEB33848 ERS3635957 Abusir1655t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1945335 ERR4375049 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4375049/ERR4375049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4375049/ERR4375049_2.fastq.gz f22d9971ef57fe9e47700a8c7457a588;688449cd8b334879880e9020e1ec45e9 131666971;121340094 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir1668-Tooth ENA PRJEB33848 ERS3635986 Abusir1668b double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1541347 ERR4375136 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/006/ERR4375136/ERR4375136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/006/ERR4375136/ERR4375136_2.fastq.gz effef5dfd1a98d96b9e3fe315f3571f1;998c0eb27a55a32b6fe0c9414bfffa84 100349234;96655523 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Abusir1668-Tooth ENA PRJEB33848 ERS3636003 Abusir1668t double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED WGS 1713268 ERR4375137 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/007/ERR4375137/ERR4375137_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/007/ERR4375137/ERR4375137_2.fastq.gz e0c16b10c7223f0f06dc877b967efade;159f44266cd022b79bcba198793b4426 118529958;117196832 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double AccuPrime Pfx DNA none HiSeq X Ten PAIRED WGS 526840783 ERR3828670 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/000/ERR3828670/ERR3828670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/000/ERR3828670/ERR3828670_2.fastq.gz 8bb30abf98faae0b4e32879e73d0fddb;2c14f5f656437db800c7d440b43118ec 32454725484;34339312668 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double AccuPrime Pfx DNA none HiSeq X Ten PAIRED WGS 28036224 ERR6504159 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR650/009/ERR6504159/ERR6504159.fastq.gz 17a0ca6e5e6bf71c9baf67a3469c9667 1215957980 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double AccuPrime Pfx DNA none HiSeq X Ten SINGLE WGS 26132707 ERR3828725 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/005/ERR3828725/ERR3828725.fastq.gz bdbd5c57583dd407cfb4fd238f65a64e 1141752081 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 191158993 ERR3841646 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/006/ERR3841646/ERR3841646.fastq.gz ad40e5810f4cade26206881f064d781a 8028301308 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 7930905 ERR3841647 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/007/ERR3841647/ERR3841647.fastq.gz 59264a85b271b4cc44ece2e409ed6257 329376589 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha-UC12-12-Tooth ENA PRJEB37726 ERS4421181 SC79-L1101 single Unknown half-udg HiSeq X Ten PAIRED WGS 285113997 ERR4017942 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_2.fastq.gz 818b384816f44c7b1879294fd37bd299;0d2e65636f7a46edf753df2e68dd8a5b 18195979831;21200990407 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha-UC12-24-Tooth ENA PRJEB37726 ERS4421183 SC79-L1096 single Unknown half-udg HiSeq X Ten PAIRED WGS 283637918 ERR4017944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_2.fastq.gz 8c7a2105a5d34c1160ea68cc6c459a7f;9365adbf8f8538a7a63631f1b3e56bda 18392091676;21164798356 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chincha-UC8-8168-Tooth ENA PRJEB37726 ERS4421185 SC79-L1099 single Unknown half-udg HiSeq X Ten PAIRED WGS 255728754 ERR4017946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_2.fastq.gz c931ada4db74d678bc82e71dad544556;e648c62aaad77dd722f482cfd6f68d0e 16428825487;18295596682 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 El_Yaral-Bone SRA PRJNA244165 SRS592075 sample_64 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 50916301 SRR1238559 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_2.fastq.gz f62e1e3dd90fb7fd0324e920f15ab8bd;b635c5da56ca1b3dd185678c9f9df508 3713855268;3742735134 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Chiribaya_Alta-Bone SRA PRJNA244165 SRS591994 sample_54 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 80406577 SRR1238558 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_2.fastq.gz 72ade0f81eed372eae9fb927a484aa44;5f1fa7e6729773322b52903151f03192 5821824690;5839496681 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double KAPA HiFi HotStart DNA none Illumina HiSeq 2500 PAIRED WGS 12285216 SRR1298750 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_2.fastq.gz 0a15035340b0c7035d3bb909880b7b0e;0922a0583a8f80ec1508ad759179176f 986232779;962732023 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Peru-NA42-Bone SRA PRJNA246597 SRS620295 NA42 double KAPA HiFi HotStart DNA full-udg Illumina HiSeq 2500 PAIRED WGS 8330163 SRR1298752 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/002/SRR1298752/SRR1298752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/002/SRR1298752/SRR1298752_2.fastq.gz 11a8d69baa09d592a540b098a730f291;f2b6407d15e52c48950109f9a0433450 682701697;664051670 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Peru-NA42-Bone SRA PRJNA246597 SRS620295 NA42 double KAPA HiFi HotStart DNA full-udg Illumina HiSeq 2500 PAIRED WGS 18730377 SRR1314214 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_2.fastq.gz d251b55d54eba0b090678c137b7db1a2;3f080f16f1ad832a0a19b532e0f3461f 1571141325;1542055871 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double KAPA HiFi HotStart DNA none Illumina HiSeq 2500 PAIRED WGS 22453782 SRR1314212 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_2.fastq.gz 2d98d878adca254a59847145e4714b3e;25bf14d82da531b60a3ca430b90877f4 1871792459;1847705551 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 5673426 SRR5169886 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_2.fastq.gz 990dd87c0889dfb683b63a81547e18ff;9920fbe01c61b92ba8b7c655dda5e6ea 371088934;370621153 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 11699427 SRR5169887 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/007/SRR5169887/SRR5169887.fastq.gz 0554a6c3520470fed11f5859dcf6ff60 654473091 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_BAM double Platinum Taq DNA-Polymerase High Fidelity none NextSeq 500 PAIRED Unknown 850652 SRR5182352 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/002/SRR5182352/SRR5182352.fastq.gz cacc950730273faf12248a8cf993d847 22154218 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 5047103 SRR5169885 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/005/SRR5169885/SRR5169885.fastq.gz e738d5fc9710f7d66bbd52398aef88ee 303750743 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 14110398 SRR5169888 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_2.fastq.gz dbb0c55e9c1da142301d4bdca8dde663;d17973f6ff1784e11a00e13cb9963253 918308388;927811702 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Gniezno-Tooth SRA PRJNA354503 SRS1815300 PCA0162 single AmpliTaq Gold DNA none Illumina Genome Analyzer II SINGLE WGS 6594634 SRR5047069 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/009/SRR5047069/SRR5047069.fastq.gz 6df299e1a545cb4a7af8bccc6645696f 441544945 -Hodgkins2023 2023 10.1007/s13313-023-00936-6 Punta_Candelero-Tooth SRA PRJNA557308 SRS5212084 PC-119-WGE double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 13553081 SRR9898505 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR989/005/SRR9898505/SRR9898505.fastq.gz 5337cb2a6102a497dda11a6381238cb6 567421190 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046399 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046399/DRR046399.fastq.gz 59098fe5c2d339f49a29f62bb581df0d 3031799168 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046405 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046405/DRR046405.fastq.gz 73f76a8c76f4548200740792cec3e80f 1480013579 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R1 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 135268 DRR046406 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046406/DRR046406.fastq.gz 37c506c70b5f4384eac3daf49bbf1806 13168706 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R2 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 135268 DRR046407 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046407/DRR046407.fastq.gz b08daf33376d9b8769638c68ef9e1624 14586872 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R1 double HotStarTaq DNA none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046408 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046408/DRR046408.fastq.gz 792187bcc4f5a0837c33bfa9bcd45ff7 25135887359 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R2 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 77847 DRR046411 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046411/DRR046411.fastq.gz a185e6ef0736d5798b73d57eade9aefe 8570877 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046402 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046402/DRR046402.fastq.gz 251cfd9c110f0c258b92986757c5e08e 2236884763 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046398 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046398/DRR046398.fastq.gz dd07acfd074d7ab3de3a737a11a02bbf 2923006982 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046400 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046400/DRR046400.fastq.gz 9baaa4283c72e838b97cec348101b1e6 2739068719 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046401 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046401/DRR046401.fastq.gz 2c7dd699fe0ed1044b150de785c8ac16 2864519935 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046403 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046403/DRR046403.fastq.gz 05f383ec42a1d9c5d73e15c91b867904 2312625893 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046404 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046404/DRR046404.fastq.gz 4589fb0baa96aee3f653d2e6de17e5fd 1438715827 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R2 double HotStarTaq DNA none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046409 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046409/DRR046409.fastq.gz c66e84985b2b86e506713a055303f3fc 25985687100 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R1 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 77847 DRR046410 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046410/DRR046410.fastq.gz 374b027632e96e155944a5ffff376fc3 7809572 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 163 ERR1937826 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/006/ERR1937826/ERR1937826.fastq.gz 4028690b02008c7d6934e4a399a3c324 8498 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 76673447 ERR1937833 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_2.fastq.gz 9f5d8938ecfab81ff4b06cf5b85ecd84;9b0a31ebf902f6749b3d2bb66fe98583 3888369913;4105585278 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 5422 ERR1937825 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937825/ERR1937825.fastq.gz a0b9ad0f50ea8d3e84968e1a6b48a34f 196674 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 SINGLE WGS 21 ERR1937828 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/008/ERR1937828/ERR1937828.fastq.gz 0853f9b447d7b2d3ea74c10e8e7b698a 882 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 52435610 ERR1937834 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_2.fastq.gz 8bdc8dc708983ac9334f59ff5d3bca09;9b02c90be8f45c0a9bdcb138459bdd64 2172525415;2376886625 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 SINGLE WGS 20404 ERR1937827 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/007/ERR1937827/ERR1937827.fastq.gz 6413c8cb99df1ce1762913cadf28329c 537498 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 2_paired_fastq double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 PAIRED WGS 44375613 ERR1937835 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_2.fastq.gz 227dbeb7889d5b4e2f5188c56d079576;d0d9ee382a5ad825a4431ebfad77ba9f 2421609326;2479467479 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 unspecified double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 807 ERR1942918 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1942918/ERR1942918.fastq.gz 8c002eac0175550cd4e5fd966261b50c 26359 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 318125040 ERR2112574 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112574/ERR2112574.fastq.gz d29e8511b8c860889920240560f28963 11592228429 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 320155752 ERR2112575 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112575/ERR2112575.fastq.gz 1c3931ef9c7b3198fd89eed4c4af79aa 11523747356 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 320577112 ERR2112576 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112576/ERR2112576.fastq.gz c01e8e624b5e7e542a6a53060eda2963 11612997118 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 286756923 ERR2112577 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112577/ERR2112577.fastq.gz 1b43fd6bdd9e0f372e0370426e502ae9 10175356811 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 165092355 ERR2112578 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112578/ERR2112578.fastq.gz a546c8d02e34ab7ba9bf9b9b70edc110 6042098938 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-004-Tooth ENA PRJEB86458 ERS1906198 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 32788454 ERR2111944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2111944/ERR2111944.fastq.gz 2268b27c14ddaa9fe8ba1994dca180b7 1476338852 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 83657790 ERR2111947 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2111947/ERR2111947.fastq.gz 28d80ed137a4f2749c8df338f1396296 4616384352 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 84678681 ERR2111948 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2111948/ERR2111948.fastq.gz 2670f6ee30cdb2e9cf25194b1d00352f 4487414231 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 41600057 ERR2111950 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/000/ERR2111950/ERR2111950.fastq.gz 7d2f61ffbc3704b514b1ad49c83cc2ea 2283826200 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42454995 ERR2111951 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2111951/ERR2111951.fastq.gz 166f95e2b9def23d98644c5c37f39841 2239935032 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 46432244 ERR2112075 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112075/ERR2112075.fastq.gz c3058a6ab2a74162e841055c2c9871e7 3315636400 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 41968696 ERR2112076 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112076/ERR2112076.fastq.gz c1f0637d92139b565497ff8eb58dc708 3024212774 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42694502 ERR2112077 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112077/ERR2112077.fastq.gz 527ea4fcb4e247423862d8d65850297f 2971810358 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 56519202 ERR2112078 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112078/ERR2112078.fastq.gz 746c40aa7f5364b424a8a010625ab555 4015798460 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 103034192 ERR2112082 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/002/ERR2112082/ERR2112082.fastq.gz b494900e3eb4faa8fc519510c3d18044 4339155003 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 48006465 ERR2112095 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112095/ERR2112095.fastq.gz aa23291e1ffa281f02cb00424cabca88 2904018843 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 46090647 ERR2112097 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112097/ERR2112097.fastq.gz a3bc3849f6ae72755564f0639badf10b 2763637774 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 34599863 ERR2111945 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2111945/ERR2111945.fastq.gz be2c0610c72a60232d3d2ceacfc45c15 1531332605 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 43607924 ERR2111949 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/009/ERR2111949/ERR2111949.fastq.gz c12312b0e05b7364e4ae34ff58dbed2b 2330733778 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 48025167 ERR2112074 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112074/ERR2112074.fastq.gz 56b44ec8a3f4a84f0e6e52f23a45244f 2650703816 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 51462140 ERR2112079 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/009/ERR2112079/ERR2112079.fastq.gz cb086c299d3dd88bea8b8497712d2f23 3674875735 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 52674925 ERR2112080 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/000/ERR2112080/ERR2112080.fastq.gz 444cfc9e7f1312e42f812bf1e0437f8b 3656995820 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 247085213 ERR2112083 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/003/ERR2112083/ERR2112083.fastq.gz 5e871b7f274fd4045af8ca7a99ba6fb1 12125066589 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 156625959 ERR2112084 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112084/ERR2112084.fastq.gz 1f89e2c52b4811dfcc047ed1ee608b7e 7764413478 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 95745866 ERR2112093 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/003/ERR2112093/ERR2112093.fastq.gz 7bd19b4ef5a6ac548a04fe4e67afc7cc 6033829981 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 97073096 ERR2112094 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112094/ERR2112094.fastq.gz 3d7cae0f6e17f95675644668c8b58c43 5838900641 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 30451552 ERR2185281 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/001/ERR2185281/ERR2185281.fastq.gz ab6526f8ff7e7706029265c64df6ffac 1188674769 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 28674836 ERR2185284 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/004/ERR2185284/ERR2185284.fastq.gz 25cd96b8767c4435b1fa287ffa9a57d9 1206388101 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 86740492 ERR2111946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2111946/ERR2111946.fastq.gz 810b089d785ebd1edbad3a41226ce5ad 4637501739 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 50136895 ERR2112081 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2112081/ERR2112081.fastq.gz 154863c74e9827eb9fee2b3a630ac19e 2230636146 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 37810056 ERR2112091 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2112091/ERR2112091.fastq.gz 9d9ff02519fdb933fe98adbac42996b3 1904292211 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 101242754 ERR2112092 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/002/ERR2112092/ERR2112092.fastq.gz b40662014d1863d723646aecec72da1b 6139469451 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 44839252 ERR2112096 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112096/ERR2112096.fastq.gz a0e40d36ccb46a36986b6396ccbdef39 2801279215 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-013-Tooth ENA PRJEB86458 ERS1906204 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42367542 ERR2112098 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112098/ERR2112098.fastq.gz 405950db4d2dd6088e452d76e574ed6b 2206630410 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 16219915 ERR2185282 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/002/ERR2185282/ERR2185282.fastq.gz ae8291e6f7c8dc421db1c5969b9230e3 681016439 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 187683798 ERR2185283 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/003/ERR2185283/ERR2185283.fastq.gz 96d19ed679b9b9a6c5b601fe840f571e 6382804778 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none NextSeq 500 PAIRED Targeted-Capture 861998 ERR2204611 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2204611/ERR2204611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2204611/ERR2204611_2.fastq.gz e97363c161e90082e6eb8fa53a3b8a58;939c0a52c40cec8b8cefdb38851435ba 39871514;41647617 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none NextSeq 500 PAIRED Targeted-Capture 28118462 ERR2204612 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/002/ERR2204612/ERR2204612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/002/ERR2204612/ERR2204612_2.fastq.gz ddfc21cae3d74b9d1c80f06f8115a71b;2b337c73947e90b37b4006bfed0e3fb5 1144496374;1271866282 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CUDG double PfuTurbo Cx Hotstart DNA full-udg NextSeq 500 PAIRED Targeted-Capture 2863375 ERR2204613 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2204613/ERR2204613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2204613/ERR2204613_2.fastq.gz c3c2cd5a50992713d7ed50f5b91dd97b;eb94f2bba3435db0075a3b6fda474505 131797035;136207848 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CUDG double PfuTurbo Cx Hotstart DNA full-udg NextSeq 500 PAIRED Targeted-Capture 96106710 ERR2204614 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204614/ERR2204614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204614/ERR2204614_2.fastq.gz cdcbb32ff04e32423a6d04609a70870e;f010594dfbd557e727f45ed8fd262db3 3851279631;4247569192 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none Illumina HiSeq 2000 PAIRED WGS 994328 ERR2204644 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204644/ERR2204644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204644/ERR2204644_2.fastq.gz 73d0b651d0d03c55e2dddbe75d77dd9d;0c02751f3c5e30e5c43e352edc178964 73031399;75636413 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Cueva_de_los_Lagos-Tooth ENA PRJEB23467 ERS2059523 unspecified double Phusion Hot Start High-Fidelity DNA none HiSeq X Ten SINGLE Unknown 179251988 ERR2224078 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR222/008/ERR2224078/ERR2224078.fastq.gz 245587cc316cb175e2eed76a5907d42e 5551553388 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Cueva_de_los_Lagos-Tooth ENA PRJEB23467 ERS2059523 unspecified double Phusion Hot Start High-Fidelity DNA none HiSeq X Ten SINGLE Unknown 1164531241 ERR2225784 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR222/004/ERR2225784/ERR2225784.fastq.gz d028912fb20f3a5c731406ad82d2e363 48849563848 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Yámana-Tooth ENA PRJEB24629 ERS2160137 unspecified double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2000 SINGLE WGS 808299942 ERR2270785 fastq_all ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR227/ERR2270785/IPY10.All.fastq.gz 3c32116386822aa24ff2efa67e5d2e94 45202276574 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Vác-Mummy-Tissue ENA PRJEB7454 ERS563409 92-A1 double Unknown none Illumina MiSeq PAIRED WGS 20084713 ERR651004 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_2.fastq.gz 3f07d29738185963f380f637b9b93065;0d96c823b7998af0b2165fe46b7e542e 2984512816;3476815638 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_10 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 75660984 ERR966295 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966295/ERR966295.fastq.gz 3f43def0d896afea489f3c5fccea36c3 3930297733 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_11 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 103486178 ERR966296 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966296/ERR966296.fastq.gz b514bc662c122adb6ac42d5acf3b05f0 5330914571 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_13 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 285814147 ERR966298 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966298/ERR966298.fastq.gz dc75bf256f29ebbd70954d7bd7ab2c9a 16162263061 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_6 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 30343646 ERR966310 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966310/ERR966310.fastq.gz 6efffec6ad1d62ed52e2cc3d3c5a7f43 1416897788 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_8 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 87962797 ERR966312 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966312/ERR966312.fastq.gz 5ceca13c5c30374209d7ea44e40de87c 4175899212 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_12 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 107286297 ERR966297 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966297/ERR966297.fastq.gz ec6261bc595a0d84a6606143492f91ec 5571578708 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_15 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 40472562 ERR966300 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966300/ERR966300.fastq.gz 600dc595ac8de4fe232ca1c00c456fec 2368473624 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_17 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 86611474 ERR966302 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966302/ERR966302.fastq.gz 1d2c52049d8c8302e8d45b83c2ce7f4f 5140536631 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_2 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 58022324 ERR966305 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966305/ERR966305.fastq.gz 9350277d1aafa8c43cec850f9e38f0e1 2756025719 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_20 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 136573362 ERR966306 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966306/ERR966306.fastq.gz 98688aecf3d8b0969298d39010220e23 6672345221 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_3 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 49940208 ERR966307 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966307/ERR966307.fastq.gz ff03f2f79b3c528eb1c98af05a3fad62 2423386088 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_4 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 26872695 ERR966308 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966308/ERR966308.fastq.gz 2557624cd4bd5e82ac3e32fc8fa4ed85 1254939750 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_7 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 94822961 ERR966311 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966311/ERR966311.fastq.gz 871dbd8cd245d22c9cdabc166b9118e5 4496790226 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_1 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 49502893 ERR966294 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966294/ERR966294.fastq.gz a808f03060305f2523287cf004fa29fc 2350014565 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_14 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 23206451 ERR966299 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966299/ERR966299.fastq.gz 4139f9e28a3f01f79f1e8fc6163342ef 1361039728 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_16 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 25867706 ERR966301 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966301/ERR966301.fastq.gz 142744b3e9bb59d960fb7959e5cadd24 1522488144 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_18 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 100755898 ERR966303 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966303/ERR966303.fastq.gz 66be0bbef7e8660498b971e19236b005 5975543012 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_19 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 85601752 ERR966304 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966304/ERR966304.fastq.gz 2377b397bc7659809ba3a3b58c9abdda 5175038658 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_5 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 47945651 ERR966309 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966309/ERR966309.fastq.gz d27e80a6d72a4e6c366a4481847639df 2206834714 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_9 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 98694708 ERR966313 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966313/ERR966313.fastq.gz 9cfcbea3b01094ef1ab7b0bd30f84c5a 4681565044 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 11472673 ERR966440 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966440/ERR966440.fastq.gz 28855b18583116ffa22e1f40fd963278 694295918 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libCAGCTA.BC28 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 50343799 ERR966426 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966426/ERR966426.fastq.gz 88d4a682975953ad845683f12590a1d3 2888163703 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 3444716 ERR966430 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966430/ERR966430.fastq.gz 075f7fe98e6ec5cde875bf670cb49c47 201382661 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Marseille-Tooth ENA PRJEB12163 ERS1020860 OBS107_UDG double AccuPrime Pfx DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 14646710 ERR1193532 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1193532/ERR1193532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1193532/ERR1193532_2.fastq.gz 884a4afc0b75b86bbb323f58b80a041c;9e5e2bca98fdf7b541b490f5955a9ad3 1149013961;1150891719 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Marseille-Tooth ENA PRJEB12163 ERS1020860 OBS107 double AccuPrime Pfx DNA full-udg Illumina HiSeq 2000 SINGLE Targeted-Capture 851096 ERR1193537 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1193537/ERR1193537.fastq.gz 864da17f8807ceecad7368caf2c92997 39236628 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Barcelona-3031-Tooth ENA PRJEB13664 ERS1124787 Barcelona3031 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 61845279 ERR1368878 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/008/ERR1368878/ERR1368878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/008/ERR1368878/ERR1368878_2.fastq.gz 095af025dc7f11f79502974aa75e7386;4130f9ec25f3df279f8142845961aadb 4422361795;4446780768 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 SLC-France-Tooth ENA PRJEB24499 ERS2865271 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 203877595 ERR2862150 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/000/ERR2862150/ERR2862150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/000/ERR2862150/ERR2862150_2.fastq.gz a6112d04b304b2375dae6c34033bbc16;acafcc79f3d021db8f3308d9ac935bcf 11059312752;11017819383 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 SLC-France-Tooth ENA PRJEB24499 ERS2865271 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 221791489 ERR2862151 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/001/ERR2862151/ERR2862151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/001/ERR2862151/ERR2862151_2.fastq.gz f80f8e1d0712e6c0f2a65e79acc67ba3;190cc46629e5eda6fef664d6cb80ee3d 11578595157;11538874156 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Karolva-Tooth ENA PRJEB32786 ERS3568107 unspecified single AccuPrime Pfx DNA none Illumina HiSeq 2500 SINGLE Unknown 1140330766 ERR3426230 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR342/000/ERR3426230/ERR3426230.fastq.gz a132e833c23eea070bcaacf5ec544fc4 52616619455 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Karolva-Tooth ENA PRJEB32786 ERS3568107 unspecified single AccuPrime Pfx DNA none Illumina HiSeq 2500 SINGLE Unknown 171457258 ERR3426214 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR342/004/ERR3426214/ERR3426214.fastq.gz b8738de2667671d5a178a72cadfee9c0 5737682401 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir1595-Tooth ENA PRJEB33848 ERS3635963 Abusir1595t double Herculase II Fusion DNA none Illumina HiSeq 2500 PAIRED WGS 1752726 ERR4374869 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4374869/ERR4374869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4374869/ERR4374869_2.fastq.gz ae15532ee7d7f77e66e514c3aba99136;7a90231a56f5b797c3b57343139ff922 123648672;117691019 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir1671-Tooth ENA PRJEB33848 ERS3636004 Abusir1671t double Herculase II Fusion DNA none Illumina HiSeq 2500 PAIRED WGS 1782693 ERR4375141 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/001/ERR4375141/ERR4375141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/001/ERR4375141/ERR4375141_2.fastq.gz 5ae99bc0ce03b22aff0d9850f1fde5d3;175c717414a955be4cf03ec799d76262 125757629;120330029 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir1607-Tooth ENA PRJEB33848 ERS3636032 Abusir1607t double Herculase II Fusion DNA none Illumina HiSeq 2500 PAIRED WGS 1586988 ERR4374914 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/004/ERR4374914/ERR4374914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/004/ERR4374914/ERR4374914_2.fastq.gz 1d77a89866d7447f45292a4dec6658a4;55da618b78bfecc4baa4584293980eb2 110209867;107590188 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir1655-Tooth ENA PRJEB33848 ERS3635957 Abusir1655t double Herculase II Fusion DNA none Illumina HiSeq 2500 PAIRED WGS 1945335 ERR4375049 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4375049/ERR4375049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4375049/ERR4375049_2.fastq.gz f22d9971ef57fe9e47700a8c7457a588;688449cd8b334879880e9020e1ec45e9 131666971;121340094 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir1668-Tooth ENA PRJEB33848 ERS3635986 Abusir1668b double Herculase II Fusion DNA none Illumina HiSeq 2500 PAIRED WGS 1541347 ERR4375136 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/006/ERR4375136/ERR4375136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/006/ERR4375136/ERR4375136_2.fastq.gz effef5dfd1a98d96b9e3fe315f3571f1;998c0eb27a55a32b6fe0c9414bfffa84 100349234;96655523 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir1668-Tooth ENA PRJEB33848 ERS3636003 Abusir1668t double Herculase II Fusion DNA none Illumina HiSeq 2500 PAIRED WGS 1713268 ERR4375137 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/007/ERR4375137/ERR4375137_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/007/ERR4375137/ERR4375137_2.fastq.gz e0c16b10c7223f0f06dc877b967efade;159f44266cd022b79bcba198793b4426 118529958;117196832 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double Unknown none HiSeq X Ten PAIRED WGS 526840783 ERR3828670 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/000/ERR3828670/ERR3828670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/000/ERR3828670/ERR3828670_2.fastq.gz 8bb30abf98faae0b4e32879e73d0fddb;2c14f5f656437db800c7d440b43118ec 32454725484;34339312668 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double Unknown none HiSeq X Ten PAIRED WGS 28036224 ERR6504159 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR650/009/ERR6504159/ERR6504159.fastq.gz 17a0ca6e5e6bf71c9baf67a3469c9667 1215957980 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double Unknown none HiSeq X Ten SINGLE WGS 26132707 ERR3828725 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/005/ERR3828725/ERR3828725.fastq.gz bdbd5c57583dd407cfb4fd238f65a64e 1141752081 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 191158993 ERR3841646 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/006/ERR3841646/ERR3841646.fastq.gz ad40e5810f4cade26206881f064d781a 8028301308 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 7930905 ERR3841647 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/007/ERR3841647/ERR3841647.fastq.gz 59264a85b271b4cc44ece2e409ed6257 329376589 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha-UC12-12-Tooth ENA PRJEB37726 ERS4421181 SC79-L1101 single Unknown half-udg HiSeq X Ten PAIRED WGS 285113997 ERR4017942 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_2.fastq.gz 818b384816f44c7b1879294fd37bd299;0d2e65636f7a46edf753df2e68dd8a5b 18195979831;21200990407 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha-UC12-24-Tooth ENA PRJEB37726 ERS4421183 SC79-L1096 single Unknown half-udg HiSeq X Ten PAIRED WGS 283637918 ERR4017944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_2.fastq.gz 8c7a2105a5d34c1160ea68cc6c459a7f;9365adbf8f8538a7a63631f1b3e56bda 18392091676;21164798356 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha-UC8-8168-Tooth ENA PRJEB37726 ERS4421185 SC79-L1099 single Unknown half-udg HiSeq X Ten PAIRED WGS 255728754 ERR4017946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_2.fastq.gz c931ada4db74d678bc82e71dad544556;e648c62aaad77dd722f482cfd6f68d0e 16428825487;18295596682 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 El_Yaral-Bone SRA PRJNA244165 SRS592075 sample_64 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 50916301 SRR1238559 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_2.fastq.gz f62e1e3dd90fb7fd0324e920f15ab8bd;b635c5da56ca1b3dd185678c9f9df508 3713855268;3742735134 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chiribaya_Alta-Bone SRA PRJNA244165 SRS591994 sample_54 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 80406577 SRR1238558 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_2.fastq.gz 72ade0f81eed372eae9fb927a484aa44;5f1fa7e6729773322b52903151f03192 5821824690;5839496681 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED WGS 12285216 SRR1298750 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_2.fastq.gz 0a15035340b0c7035d3bb909880b7b0e;0922a0583a8f80ec1508ad759179176f 986232779;962732023 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Peru-NA42-Bone SRA PRJNA246597 SRS620295 NA42 double Platinum Taq DNA-Polymerase High Fidelity full-udg Illumina HiSeq 2500 PAIRED WGS 8330163 SRR1298752 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/002/SRR1298752/SRR1298752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/002/SRR1298752/SRR1298752_2.fastq.gz 11a8d69baa09d592a540b098a730f291;f2b6407d15e52c48950109f9a0433450 682701697;664051670 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Peru-NA42-Bone SRA PRJNA246597 SRS620295 NA42 double Platinum Taq DNA-Polymerase High Fidelity full-udg Illumina HiSeq 2500 PAIRED WGS 18730377 SRR1314214 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_2.fastq.gz d251b55d54eba0b090678c137b7db1a2;3f080f16f1ad832a0a19b532e0f3461f 1571141325;1542055871 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED WGS 22453782 SRR1314212 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_2.fastq.gz 2d98d878adca254a59847145e4714b3e;25bf14d82da531b60a3ca430b90877f4 1871792459;1847705551 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 5673426 SRR5169886 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_2.fastq.gz 990dd87c0889dfb683b63a81547e18ff;9920fbe01c61b92ba8b7c655dda5e6ea 371088934;370621153 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 11699427 SRR5169887 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/007/SRR5169887/SRR5169887.fastq.gz 0554a6c3520470fed11f5859dcf6ff60 654473091 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_BAM double Platinum Taq DNA-Polymerase High Fidelity none NextSeq 500 PAIRED Unknown 850652 SRR5182352 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/002/SRR5182352/SRR5182352.fastq.gz cacc950730273faf12248a8cf993d847 22154218 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 5047103 SRR5169885 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/005/SRR5169885/SRR5169885.fastq.gz e738d5fc9710f7d66bbd52398aef88ee 303750743 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 14110398 SRR5169888 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_2.fastq.gz dbb0c55e9c1da142301d4bdca8dde663;d17973f6ff1784e11a00e13cb9963253 918308388;927811702 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Gniezno-Tooth SRA PRJNA354503 SRS1815300 PCA0162 single Phusion Hot Start High-Fidelity DNA none Illumina Genome Analyzer II SINGLE WGS 6594634 SRR5047069 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/009/SRR5047069/SRR5047069.fastq.gz 6df299e1a545cb4a7af8bccc6645696f 441544945 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Punta_Candelero-Tooth SRA PRJNA557308 SRS5212084 PC-119-WGE double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 13553081 SRR9898505 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR989/005/SRR9898505/SRR9898505.fastq.gz 5337cb2a6102a497dda11a6381238cb6 567421190 From e76fae502271a74e7256e448cf03255a95d539fd Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Alex=20H=C3=BCbner?= Date: Mon, 4 Dec 2023 17:03:53 +0100 Subject: [PATCH 15/16] Replace the polymerase with 1st one from Rasmussen et al. --- ...tsinglegenome-hostassociated_libraries.tsv | 28 +++++++++---------- 1 file changed, 14 insertions(+), 14 deletions(-) diff --git a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv index 2daa79847..f308a500f 100644 --- a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv +++ b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv @@ -2865,20 +2865,20 @@ Campos2023 2023 10.1038/s41467-023-39950-z HERB_1922 SRA PRJNA883598 SRS15248965 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1946 SRA PRJNA883598 SRS15248966 HERB_1946 double Unknown none NextSeq 500 SINGLE WGS 10729826 SRR21721650 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/050/SRR21721650/SRR21721650.fastq.gz f31a22f48c35afdba9cfbd2d6f87dd73 311169565 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1963 SRA PRJNA883598 SRS15248957 HERB_1963 double PfuTurbo Cx Hotstart DNA none NextSeq 500 SINGLE WGS 4107994 SRR21721659 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/059/SRR21721659/SRR21721659.fastq.gz 718980e28d0c4dc91bd52d1efbc9f70a 139054986 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1974 SRA PRJNA883598 SRS15248958 HERB_1974 double Unknown none NextSeq 500 SINGLE WGS 9256767 SRR21721658 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/058/SRR21721658/SRR21721658.fastq.gz e4530fe1bb2ee93f38c728edf4283d3c 199004045 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046399 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046399/DRR046399.fastq.gz 59098fe5c2d339f49a29f62bb581df0d 3031799168 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046405 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046405/DRR046405.fastq.gz 73f76a8c76f4548200740792cec3e80f 1480013579 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R1 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 135268 DRR046406 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046406/DRR046406.fastq.gz 37c506c70b5f4384eac3daf49bbf1806 13168706 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R2 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 135268 DRR046407 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046407/DRR046407.fastq.gz b08daf33376d9b8769638c68ef9e1624 14586872 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R1 double HotStarTaq DNA none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046408 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046408/DRR046408.fastq.gz 792187bcc4f5a0837c33bfa9bcd45ff7 25135887359 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R2 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 77847 DRR046411 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046411/DRR046411.fastq.gz a185e6ef0736d5798b73d57eade9aefe 8570877 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046402 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046402/DRR046402.fastq.gz 251cfd9c110f0c258b92986757c5e08e 2236884763 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046398 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046398/DRR046398.fastq.gz dd07acfd074d7ab3de3a737a11a02bbf 2923006982 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046400 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046400/DRR046400.fastq.gz 9baaa4283c72e838b97cec348101b1e6 2739068719 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046401 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046401/DRR046401.fastq.gz 2c7dd699fe0ed1044b150de785c8ac16 2864519935 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R2 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046403 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046403/DRR046403.fastq.gz 05f383ec42a1d9c5d73e15c91b867904 2312625893 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R1 double HotStarTaq DNA none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046404 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046404/DRR046404.fastq.gz 4589fb0baa96aee3f653d2e6de17e5fd 1438715827 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R2 double HotStarTaq DNA none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046409 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046409/DRR046409.fastq.gz c66e84985b2b86e506713a055303f3fc 25985687100 -Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R1 double HotStarTaq DNA none Illumina MiSeq PAIRED WGS 77847 DRR046410 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046410/DRR046410.fastq.gz 374b027632e96e155944a5ffff376fc3 7809572 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R2 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046399 fastq_all 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ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046407/DRR046407.fastq.gz b08daf33376d9b8769638c68ef9e1624 14586872 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R1 double AmpliTaq Gold DNA none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046408 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046408/DRR046408.fastq.gz 792187bcc4f5a0837c33bfa9bcd45ff7 25135887359 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R2 double AmpliTaq Gold DNA none Illumina MiSeq PAIRED WGS 77847 DRR046411 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046411/DRR046411.fastq.gz a185e6ef0736d5798b73d57eade9aefe 8570877 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R1 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046402 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046402/DRR046402.fastq.gz 251cfd9c110f0c258b92986757c5e08e 2236884763 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R1 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046398 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046398/DRR046398.fastq.gz dd07acfd074d7ab3de3a737a11a02bbf 2923006982 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R1 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046400 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046400/DRR046400.fastq.gz 9baaa4283c72e838b97cec348101b1e6 2739068719 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R2 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046401 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046401/DRR046401.fastq.gz 2c7dd699fe0ed1044b150de785c8ac16 2864519935 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R2 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046403 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046403/DRR046403.fastq.gz 05f383ec42a1d9c5d73e15c91b867904 2312625893 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R1 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046404 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046404/DRR046404.fastq.gz 4589fb0baa96aee3f653d2e6de17e5fd 1438715827 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R2 double AmpliTaq Gold DNA none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046409 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046409/DRR046409.fastq.gz c66e84985b2b86e506713a055303f3fc 25985687100 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R1 double AmpliTaq Gold DNA none Illumina MiSeq PAIRED WGS 77847 DRR046410 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046410/DRR046410.fastq.gz 374b027632e96e155944a5ffff376fc3 7809572 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 163 ERR1937826 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/006/ERR1937826/ERR1937826.fastq.gz 4028690b02008c7d6934e4a399a3c324 8498 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 76673447 ERR1937833 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_2.fastq.gz 9f5d8938ecfab81ff4b06cf5b85ecd84;9b0a31ebf902f6749b3d2bb66fe98583 3888369913;4105585278 Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 5422 ERR1937825 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937825/ERR1937825.fastq.gz a0b9ad0f50ea8d3e84968e1a6b48a34f 196674 From 9da3cf1b91032d82180c26c86b6638b93f2dd309 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Alex=20H=C3=BCbner?= Date: Mon, 4 Dec 2023 17:08:06 +0100 Subject: [PATCH 16/16] Add recent changes --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 1ec2cb9d6..93fc0d3fb 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -21,6 +21,8 @@ and this project follows to [Calendar Versioning](https://calver.org/). ### Changed +- Fix coordinate of sample SK8 in Schuenemann 2013 10.1126/science.1238286 (@DianaSpurite and @marcel-keller) + ### Removed ## v23.09: Historic Centre of Cienfuegos