Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

GHA Autofill experiment #1145

Closed
wants to merge 17 commits into from
Closed

GHA Autofill experiment #1145

wants to merge 17 commits into from

Conversation

jfy133
Copy link
Member

@jfy133 jfy133 commented Feb 12, 2024 •
edited
Loading

Adds a script that given a table and a project key in that table, it should run autofill of just those hits.

Using an open PR as a test run (Nishimura2024). Example command:

bash assets/utility/autofill-wrapper.sh -t ancientmetagenome-hostassociated -p Nishimura2024 -v

TODO:

  • get a github action to pick up the three variables from a message "@spaam-bot autofill ancientmetagenome-hostassociated Nishimura2024"
    -if generates output, then upload the file
  • if exits 1 because no hits, then upload warning message

@jfy133 jfy133 marked this pull request as draft February 12, 2024 21:11
@jfy133 jfy133 mentioned this pull request Feb 12, 2024
Closed
@jfy133
Copy link
Member Author

jfy133 commented Feb 16, 2024

@spaam-bot please autofill

@jfy133
Copy link
Member Author

jfy133 commented Feb 16, 2024

@spaam-bot please autofill

@jfy133
Copy link
Member Author

jfy133 commented Feb 16, 2024

@spaam-bot please autofill

@jfy133
Copy link
Member Author

jfy133 commented Feb 16, 2024

@spaam-bot please autofill

@jfy133
Copy link
Member Author

jfy133 commented Mar 15, 2024

@spaam-bot please autofill

@jfy133
Copy link
Member Author

jfy133 commented Mar 15, 2024

@spaam-bot please autofill

@jfy133
Copy link
Member Author

jfy133 commented Mar 15, 2024

@spaam-bot please autofill

@jfy133
Copy link
Member Author

jfy133 commented Mar 15, 2024

@spaam-bot please autofill

@jfy133
Copy link
Member Author

jfy133 commented Mar 15, 2024

@spaam-bot please autofill

1 similar comment
@jfy133
Copy link
Member Author

jfy133 commented Mar 15, 2024

@spaam-bot please autofill

@jfy133
Copy link
Member Author

jfy133 commented Mar 15, 2024

@spaam-bot please autofill

1 similar comment
@jfy133
Copy link
Member Author

jfy133 commented Mar 15, 2024

@spaam-bot please autofill

@jfy133
Copy link
Member Author

jfy133 commented Mar 15, 2024

@spaam-bot please autofill

@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot autofill ancientsinglegenome-hostassociated Majander2024

@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill

@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

6 similar comments
@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

@jfy133 jfy133 force-pushed the master branch 3 times, most recently from add2f30 to be27088 Compare March 21, 2024 16:06
@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill breeakme breakme

2 similar comments
@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill breeakme breakme

@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill breeakme breakme

@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

1 similar comment
@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill ancientsinglegenome-ds

@jfy133 jfy133 force-pushed the master branch 2 times, most recently from 223e767 to c16a3da Compare March 21, 2024 16:32
@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill ancientsinglegenome-ds

1 similar comment
@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024

@spaam-bot please autofill ancientsinglegenome-ds

@jfy133
Copy link
Member Author

jfy133 commented Mar 21, 2024 •
edited
Loading

TODO:

  • Update Pull Request template with new instructions and simplify
  • Further tests (e.g. wrong project name, wrong table etc) -> may want to replace failure with text based if possible
  • Open a demo PR

@jfy133
Copy link
Member Author

jfy133 commented Mar 22, 2024

@spaam-bot please autofill ancientsinglegenome-hostassociated Majander2024

@github-actions GitHub Actions
Copy link

nf-core/taxprofiler

Autofill success! 🎉

Download the attempted autofilled library file by pressing this link.

You can now fill in the remainder of the columns, and append to the end of the corresponding library file.
Please remember this service attempts to pull relevant metadata from the ENA, but metadata is not always correct!

Warning

Always check accuracy of pre-filled columns before adding to the library table!

@jfy133 jfy133 closed this Mar 25, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
1 participant
@jfy133