diff --git a/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv b/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv index c51698a14..d63b8bbcb 100644 --- a/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv +++ b/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv @@ -863,10 +863,10 @@ FellowsYates2021 2021 10.1073/pnas.2021655118 El Collado 38.919 -0.121 Spain ECO FellowsYates2021 2021 10.1073/pnas.2021655118 El Collado 38.919 -0.121 Spain ECO010.B Homo sapiens 9000 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774463 FellowsYates2021 2021 10.1073/pnas.2021655118 El Mirón 38.919 -0.121 Spain EMN001.A Homo sapiens 9000 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774464 FellowsYates2021 2021 10.1073/pnas.2021655118 Mota 7.29 37.47 Ethiopia MOA001.A Homo sapiens 4500 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774465 -FellowsYates2021 2021 10.1073/pnas.2021655118 Dolní Věstonice II 48.883 16.65 Czech Republic DLV001.A Homo sapiens 31000 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774466 -FellowsYates2021 2021 10.1073/pnas.2021655118 Dolní Věstonice II 48.883 16.650086 Czech Republic DLV002.A Homo sapiens 31000 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774467 +FellowsYates2021 2021 10.1073/pnas.2021655118 Dolní Věstonice II 48.883 16.65 Czechia DLV001.A Homo sapiens 31000 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774466 +FellowsYates2021 2021 10.1073/pnas.2021655118 Dolní Věstonice II 48.883 16.650086 Czechia DLV002.A Homo sapiens 31000 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774467 FellowsYates2021 2021 10.1073/pnas.2021655118 Größe Ofnethöhle 48.818 10.45 Germany OFN001.A Homo sapiens 9200 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774468 -FellowsYates2021 2021 10.1073/pnas.2021655118 Pavlov I 48.873 16.672 Czech Republic PLV001.A Homo sapiens 29500 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774469 +FellowsYates2021 2021 10.1073/pnas.2021655118 Pavlov I 48.873 16.672 Czechia PLV001.A Homo sapiens 29500 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774469 FellowsYates2021 2021 10.1073/pnas.2021655118 Grotte de Rigney 47.383 6.166 France RIG001.A Homo sapiens 15400 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774470 FellowsYates2021 2021 10.1073/pnas.2021655118 Essaouira (Mogador) 31.51 -9.76 Morocco ESA003.A Homo sapiens 300 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774471 FellowsYates2021 2021 10.1073/pnas.2021655118 Essaouira (Mogador) 31.51 -9.76 Morocco ESA004.A Homo sapiens 300 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774472 diff --git a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv index bdadf8bb5..f34db1b16 100644 --- a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv +++ b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv @@ -6,7 +6,7 @@ Schuenemann2013 2013 10.1126/science.1238286 St. Mary Magdalene leprosarium, Win Schuenemann2013 2013 10.1126/science.1238286 St. Mary Magdalene leprosarium, Winchester 51.059 -1.308 United Kingdom SK8 Homo sapiens 1000 10.1126/science.1238286 bacteria Mycobacterium leprae tooth chromosome SRA raw PRJNA200950 SRS418845 Schuenemann2018 2018 10.1371/journal.ppat.1006997 Szentes-Kistőke 46.715 20.281 Hungary SK11 Homo sapiens 1300 10.1016/j.meegid.2015.02.001 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667046 Schuenemann2018 2018 10.1371/journal.ppat.1006997 Necropoli Vicenne Campochiaro 41.564 14.498 Italy T18 Homo sapiens 1300 10.1016/j.meegid.2015.02.001 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667044 -Schuenemann2018 2018 10.1371/journal.ppat.1006997 Prušánky 48.831 16.982 Czech Republic Body 188 Homo sapiens 1100 10.1016/j.meegid.2015.02.001 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667047 +Schuenemann2018 2018 10.1371/journal.ppat.1006997 Prušánky 48.831 16.982 Czechia Body 188 Homo sapiens 1100 10.1016/j.meegid.2015.02.001 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667047 Schuenemann2018 2018 10.1371/journal.ppat.1006997 Great Chesterford 52.063 0.193 United Kingdom GC96 Homo sapiens 1500 10.1371/journal.pone.0124282 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667045 Warinner2014 2014 10.1038/ng.2906 Dalheim 51.565 8.84 Germany G12 Homo sapiens 900 10.1038/ng.2906 bacteria Tannerella forsythia tooth chromosome SRA raw PRJNA216965 SRS473747,SRS473746,SRS473748,SRS473749,SRS473750 Bos2014 2014 10.1038/nature13591 El Yaral -17.41 -71.092 Peru 64 Homo sapiens 900 10.1038/nature13591 bacteria Mycobacterium pinnipedii bone chromosome SRA raw PRJNA244165 SRS592075 @@ -47,8 +47,8 @@ Muhlemann2018 2018 10.1038/s41586-018-0097-z Keden 41.428 75.329 Kyrgyzstan DA51 Muhlemann2018 2018 10.1038/s41586-018-0097-z Bulanovo 52.453 55.16 Russia RISE386 Homo sapiens 3800 10.1038/s41586-018-0097-z virus Hepatitis B virus tooth chromosome GenBank consensus,assembly PRJEB25584 LT992448 Muhlemann2018 2018 10.1038/s41586-018-0097-z Butakty 43.202 76.981 Kazakhstan DA222 Homo sapiens 1100 10.1038/s41586-018-0097-z virus Hepatitis B virus unknown chromosome GenBank consensus,assembly PRJEB25584 LT992454 Dux2020 2020 10.1126/science.aba9411 Berlin 52.51 13.4 Germany BMM 655/1912 Homo sapiens 100 10.1126/science.aba9411 virus Measles morbillivirus lung tissue chromosome ENA raw PRJEB36265 ERS4249335 -Dux2020 2020 10.1126/science.aba9411 Prague 50.06 14.46 Czech Republic MVi/Prague.CZE/60/1 Homo sapiens 100 10.1126/science.aba9411 virus Measles morbillivirus isolate chromosome ENA raw PRJEB36265 ERS4249362 -Dux2020 2020 10.1126/science.aba9411 Prague 50.06 14.46 Czech Republic Mvi/Prague.CZE/60/2 Homo sapiens 100 10.1126/science.aba9411 virus Measles morbillivirus isolate chromosome ENA raw PRJEB36265 ERS4249363 +Dux2020 2020 10.1126/science.aba9411 Prague 50.06 14.46 Czechia MVi/Prague.CZE/60/1 Homo sapiens 100 10.1126/science.aba9411 virus Measles morbillivirus isolate chromosome ENA raw PRJEB36265 ERS4249362 +Dux2020 2020 10.1126/science.aba9411 Prague 50.06 14.46 Czechia Mvi/Prague.CZE/60/2 Homo sapiens 100 10.1126/science.aba9411 virus Measles morbillivirus isolate chromosome ENA raw PRJEB36265 ERS4249363 Maixner2016 2016 10.1126/science.aad2545 Hauslabjoch 46.773 10.837 Italy Iceman Stomach/Intestine (1054/1051/1063/1036) Homo sapiens 5300 10.1126/science.aad2545 bacteria Helicobacter pylori digestive tract contents chromosome ENA raw PRJEB11511 ERS942275,ERS942266,ERS942283,ERS942284,ERS942285,ERS942286,ERS942287,ERS942288,ERS942289,ERS942290,ERS942291,ERS942292,ERS942293,ERS942294,ERS942267,ERS942277,ERS942270,ERS942274,ERS942269,ERS942268,ERS942271,ERS942265,ERS942273,ERS942272,ERS942281,ERS942282 Guellil2018 2018 10.1073/pnas.1807266115 St Nicolay’s ALT St Clement's Church, Oslo 59.904 10.765 Norway OSL9a Homo sapiens 400 10.1073/pnas.1807266115 bacteria Borrelia recurrentis tooth chromosome ENA raw PRJEB24501 ERS2591211 Guellil2018 2018 10.1073/pnas.1807266115 St Nicolay’s ALT St Clement's Church, Oslo 59.904 10.765 Norway OSL9b Homo sapiens 400 10.1073/pnas.1807266116 bacteria Borrelia recurrentis tooth chromosome ENA raw PRJEB24501 ERS2591210 @@ -108,7 +108,7 @@ Keller2019 2019 10.1073/pnas.1820447116 Waging 47.934 12.733 Germany WAG001.A Ho Muhlemann2018b 2018 10.1073/pnas.1804921115 Tian Shan 41.501 75.794 Kyrgyzstan DA66 Homo sapiens 1500 10.1073/pnas.1804921115 virus Parvovirus B19 unknown chromosome GitHub reference_aligned,consensus acorg/parvo-2018 DA66 Muhlemann2018b 2018 10.1073/pnas.1804921115 Lake Baikal (Shamanka II) 51.698 103.703 Russia DA337 Homo sapiens 4000 10.1073/pnas.1804921115 virus Parvovirus B19 unknown chromosome GitHub reference_aligned,consensus acorg/parvo-2018 DA337 Muhlemann2018b 2018 10.1073/pnas.1804921115 Gotland 57.63 18.28 Sweden VK477 Homo sapiens 1000 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 VK477 -Muhlemann2018b 2018 10.1073/pnas.1804921115 Brandýsek 50.18 14.15 Czech Republic RISE569 Homo sapiens 1300 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 RISE569 +Muhlemann2018b 2018 10.1073/pnas.1804921115 Brandýsek 50.18 14.15 Czechia RISE569 Homo sapiens 1300 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 RISE569 Muhlemann2018b 2018 10.1073/pnas.1804921115 Bazaiha, Krasnoyarsk 55.951 92.784 Russia NEO105 Homo sapiens 500 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 NEO105 Muhlemann2018b 2018 10.1073/pnas.1804921115 Lake Baikal (Shamanka II) 51.698 103.703 Russia DA251 Homo sapiens 6900 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 DA251 Muhlemann2018b 2018 10.1073/pnas.1804921115 Eastern Settlement 60.99 -45.42 Greenland VK6 Homo sapiens 1000 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 VK6 @@ -366,7 +366,7 @@ Kocher2021 2021 10.1126/science.abi5658 Kaps 40.867 43.717 Armenia ARM001 Homo s Kocher2021 2021 10.1126/science.abi5658 Kaps 40.867 43.717 Armenia ARM0023 Homo sapiens 5200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597753 Kocher2021 2021 10.1126/science.abi5658 Arslantepe 38.382 38.361 Turkey ART005 Homo sapiens 5700 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597754 Kocher2021 2021 10.1126/science.abi5658 Arslantepe 38.382 38.361 Turkey ART024 Homo sapiens 5400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597755 -Kocher2021 2021 10.1126/science.abi5658 Brandýs nad Labem 50.187 14.664 Czech Republic BNL005 Homo sapiens 4100 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597756 +Kocher2021 2021 10.1126/science.abi5658 Brandýs nad Labem 50.187 14.664 Czechia BNL005 Homo sapiens 4100 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597756 Kocher2021 2021 10.1126/science.abi5658 Boncuklu Hoyuk 37.752 32.865 Turkey BON020 Homo sapiens 10100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597757 Kocher2021 2021 10.1126/science.abi5658 Bolshoy Oleni Ostrov 69.224 33.485 Russia BOO006 Homo sapiens 3500 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597758 Kocher2021 2021 10.1126/science.abi5658 Bolshoy Oleni Ostrov 69.224 33.485 Russia BOO008 Homo sapiens 3500 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597759 @@ -388,7 +388,7 @@ Kocher2021 2021 10.1126/science.abi5658 Gurgy Les Noisats 47.864 3.56 France GRG Kocher2021 2021 10.1126/science.abi5658 Gurgy Les Noisats 47.864 3.56 France GRG036 Homo sapiens 6800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597775 Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany HAL05 Homo sapiens 7100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597776 Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany HAL15 Homo sapiens 7000 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597777 -Kocher2021 2021 10.1126/science.abi5658 Hostivice-Palouky 50.08 14.281 Czech Republic HOP004 Homo sapiens 4300 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597778 +Kocher2021 2021 10.1126/science.abi5658 Hostivice-Palouky 50.08 14.281 Czechia HOP004 Homo sapiens 4300 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597778 Kocher2021 2021 10.1126/science.abi5658 Ölsund, Hälsingland 61.632 16.36 Sweden HSL001 Homo sapiens 4400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597779 Kocher2021 2021 10.1126/science.abi5658 Vegachayoq Moqo, Huari -13.06 -74.2 Peru HUA056 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597780 Kocher2021 2021 10.1126/science.abi5658 Vegachayoq Moqo, Huari -13.06 -74.2 Peru HUA063 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597781 @@ -439,14 +439,14 @@ Kocher2021 2021 10.1126/science.abi5658 Leubingen 51.206 11.183 Germany LEU065 H Kocher2021 2021 10.1126/science.abi5658 Loschbour rock shelter 49.77 6.24 Luxembourg Loschbour Homo sapiens 8100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597826 Kocher2021 2021 10.1126/science.abi5658 Machu Picchu -13.163 -72.546 Peru MAP007 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597827 Kocher2021 2021 10.1126/science.abi5658 Mayachnyiy bugor 47.095 47.211 Russia MAY017 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597828 -Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIB003 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597829 -Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIB011 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597830 -Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIB040 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597831 -Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIB041 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597832 -Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIS002 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597833 +Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czechia MIB003 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597829 +Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czechia MIB011 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597830 +Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czechia MIB040 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597831 +Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czechia MIB041 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597832 +Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czechia MIS002 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597833 Kocher2021 2021 10.1126/science.abi5658 Maryinskaya 5 43.905 43.522 Russia MK5004 Homo sapiens 5200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597834 Kocher2021 2021 10.1126/science.abi5658 Maryinskaya 5 43.905 43.522 Russia MK5009 Homo sapiens 4800 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597835 -Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MKL025 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597836 +Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czechia MKL025 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597836 Kocher2021 2021 10.1126/science.abi5658 Malaya Ryazan' 53.224 49.315 Russia MLR005 Homo sapiens 700 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597837 Kocher2021 2021 10.1126/science.abi5658 Minino II 59.382 39.396 Russia MN2003 Homo sapiens 10600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597838 Kocher2021 2021 10.1126/science.abi5658 Kanaljorden, Motala 58.548 14.972 Sweden MOT001 Homo sapiens 7800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597839 @@ -456,8 +456,8 @@ Kocher2021 2021 10.1126/science.abi5658 Nevinnomyskiy 3 44.735 41.939 Russia NV3 Kocher2021 2021 10.1126/science.abi5658 Oakington 52.26 0.061 United Kingdom OAI017 Homo sapiens 1500 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597843 Kocher2021 2021 10.1126/science.abi5658 Oberottmarshausen 48.233 10.861 Germany OOH025 Homo sapiens 3600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597844 Kocher2021 2021 10.1126/science.abi5658 Orenburg 51.81 55.18 Russia ORE002 Homo sapiens 2600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597845 -Kocher2021 2021 10.1126/science.abi5658 Prague 8 - Ďáblice 50.148 14.485 Czech Republic PDA001 Homo sapiens 4100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597846 -Kocher2021 2021 10.1126/science.abi5658 Prague 8 - Ďáblice 50.148 14.485 Czech Republic PDA003 Homo sapiens 4200 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597847 +Kocher2021 2021 10.1126/science.abi5658 Prague 8 - Ďáblice 50.148 14.485 Czechia PDA001 Homo sapiens 4100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597846 +Kocher2021 2021 10.1126/science.abi5658 Prague 8 - Ďáblice 50.148 14.485 Czechia PDA003 Homo sapiens 4200 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597847 Kocher2021 2021 10.1126/science.abi5658 Pendimoun 43.81 7.51 France PEN003 Homo sapiens 7400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597848 Kocher2021 2021 10.1126/science.abi5658 Purun Llacta de Soloco -6.3 -77.701 Peru PLS004 Homo sapiens 400 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597849 Kocher2021 2021 10.1126/science.abi5658 Peñón de la Zorra 38.645 -0.87 Spain PLZ001 Homo sapiens 3600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597850 @@ -485,8 +485,8 @@ Kocher2021 2021 10.1126/science.abi5658 Grotta dell'Uzzo 38.11 12.787 Italy UZZ0 Kocher2021 2021 10.1126/science.abi5658 Grotta dell'Uzzo 38.11 12.787 Italy UZZ081 Homo sapiens 8600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597872 Kocher2021 2021 10.1126/science.abi5658 Grotta dell'Uzzo 38.11 12.787 Italy UZZ099 Homo sapiens 6000 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597873 Kocher2021 2021 10.1126/science.abi5658 Varna 43.219 27.914 Bulgaria VAR021 Homo sapiens 6500 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597874 -Kocher2021 2021 10.1126/science.abi5658 Vliněves 50.373 14.449 Czech Republic VLI016 Homo sapiens 4400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597875 -Kocher2021 2021 10.1126/science.abi5658 Vliněves 50.373 14.449 Czech Republic VLI060 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597876 +Kocher2021 2021 10.1126/science.abi5658 Vliněves 50.373 14.449 Czechia VLI016 Homo sapiens 4400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597875 +Kocher2021 2021 10.1126/science.abi5658 Vliněves 50.373 14.449 Czechia VLI060 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597876 Kocher2021 2021 10.1126/science.abi5658 Vertaizon 45.774 3.287 France VTZ008 Homo sapiens 6400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597877 Kocher2021 2021 10.1126/science.abi5658 Vertaizon 45.774 3.287 France VTZ011 Homo sapiens 6600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597878 Kocher2021 2021 10.1126/science.abi5658 Wehringen-Hochfeld 48.247 10.801 Germany WEH008 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597879 @@ -496,21 +496,21 @@ Kocher2021 2021 10.1126/science.abi5658 Wenigensömmern 51.174 11.136 Germany WS Kocher2021 2021 10.1126/science.abi5658 Yunatsite 42.23 24.26 Bulgaria YUN048 Homo sapiens 6500 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597883 Kocher2021 2021 10.1126/science.abi5658 Zweisimmen Kirchgasse 46.554 7.372 Switzerland ZWE008 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597884 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Dereivka I 48.91 33.76 Ukraine I5884 Homo sapiens 4200 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777163 -AndradesValtuena2022 2022 10.1073/pnas.2116722119 Vlineves 50.373 14.449 Czech Republic VLI092 Homo sapiens 4200 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777164 +AndradesValtuena2022 2022 10.1073/pnas.2116722119 Vlineves 50.373 14.449 Czechia VLI092 Homo sapiens 4200 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777164 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Krasnogvardeyskoe 45.825 41.582 Russia KNK001 Homo sapiens 4200 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777165 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Großstorkwitz 51.189 12.267 Germany GRS004 Homo sapiens 4100 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777166 -AndradesValtuena2022 2022 10.1073/pnas.2116722119 Hostivice-Palouky 50.08 14.281 Czech Republic HOP001 Homo sapiens 3800 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777167 -AndradesValtuena2022 2022 10.1073/pnas.2116722119 Hostivice-Palouky 50.08 14.281 Czech Republic HOP004 Homo sapiens 3800 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777168 +AndradesValtuena2022 2022 10.1073/pnas.2116722119 Hostivice-Palouky 50.08 14.281 Czechia HOP001 Homo sapiens 3800 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777167 +AndradesValtuena2022 2022 10.1073/pnas.2116722119 Hostivice-Palouky 50.08 14.281 Czechia HOP004 Homo sapiens 3800 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777168 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Kaluzhnyy 1 44.848 42.219 Russia KLZ001 Homo sapiens 3800 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777169 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Chociwel 50.796 17.094 Poland CHC004 Homo sapiens 3600 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777170 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Kleinaitingen 48.218 10.846 Germany KLE031 Homo sapiens 3500 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777171 -AndradesValtuena2022 2022 10.1073/pnas.2116722119 Mikulovice 49.992 15.777 Czech Republic MIB054 Homo sapiens 3600 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777172,ERS10777173,ERS10777174 +AndradesValtuena2022 2022 10.1073/pnas.2116722119 Mikulovice 49.992 15.777 Czechia MIB054 Homo sapiens 3600 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777172,ERS10777173,ERS10777174 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Kleinaitingen 48.218 10.846 Germany KLE048 Homo sapiens 3400 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777175 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Oberottmarshausen 48.233 10.861 Germany OOH003 Homo sapiens 3300 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777176 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Dolmen “El Sotillo” 42.573 -2.621 Spain I2470 Homo sapiens 3100 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777177 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Arbulag sum, Khövsgöl 49.65 99.72 Mongolia ARS007 Homo sapiens 3000 10.1073/pnas.1813608115 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777178 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Kyzyl 48.278 75.356 Kazakhstan KZL002 Homo sapiens 2500 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777179 -AndradesValtuena2022 2022 10.1073/pnas.2116722119 Velešovice 49.178 16.848 Czech Republic VEL003 Homo sapiens 4000 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777180 +AndradesValtuena2022 2022 10.1073/pnas.2116722119 Velešovice 49.178 16.848 Czechia VEL003 Homo sapiens 4000 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777180 AndradesValtuena2022 2022 10.1073/pnas.2116722119 Grushevskoe 45.063 41.54 Russia GRH001 Homo sapiens 2700 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777181 Granehall2021 2021 10.1186/s40168-021-01132-8 Isarco valley, Bressanone Elvas necropoli 17/Brixen Elvas 46.73 11.67 Italy 2102 Homo sapiens 1300 10.1016/j.quaint.2013.07.052 archaea Methanobrevibacter oralis dental calculus chromosome ENA raw PRJEB43389 ERS6205401 Pfrengle2021 2021 10.1186/s12915-021-01120-2 Studzenka 53.585 30.029 Belarus BEL024 Homo sapiens 800 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA721828 SRS9825982 diff --git a/assets/enums/geo_loc_name.json b/assets/enums/geo_loc_name.json index a83b7a622..25ed5ff43 100644 --- a/assets/enums/geo_loc_name.json +++ b/assets/enums/geo_loc_name.json @@ -64,7 +64,7 @@ "Cuba", "Curacao", "Cyprus", - "Czech Republic", + "Czechia", "Democratic Republic of the Congo", "Denmark", "Djibouti", @@ -161,7 +161,7 @@ "Mayotte", "Mediterranean Sea", "Mexico", - "Micronesia", + "Micronesia, Federated States of", "Midway Islands", "Moldova", "Monaco", @@ -210,9 +210,11 @@ "Ross Sea", "Russia", "Rwanda", + "Saint Barthelemy", "Saint Helena", "Saint Kitts and Nevis", "Saint Lucia", + "Saint Martin", "Saint Pierre and Miquelon", "Saint Vincent and the Grenadines", "Samoa", diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.png b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.png index c79c73c87..dfee6ab73 100644 Binary files a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.png and b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.png differ diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.svg b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.svg index 6731d27e3..d64fa694d 100644 --- a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.svg +++ b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.svg @@ -36,16 +36,16 @@ - - - - - - - - - - + + + + + + + + + + @@ -57,26 +57,26 @@ - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + @@ -97,16 +97,16 @@ - - - - - - - - - - + + + + + + + + + + @@ -165,34 +165,40 @@ 2023 0 -500 -1 000 -1 500 +500 +1 000 +1 500 +2 000 - - - + + + + 0 -500 -1 000 -1 500 +500 +1 000 +1 500 +2 000 - - - + + + + 0 -500 -1 000 -1 500 +500 +1 000 +1 500 +2 000 - - - + + + + Publication year Number of libraries (cumulative sum) -Updated: 2024-04-08 +Updated: 2024-10-03 Published libraries per year License: CC-BY 4.0. diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.png b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.png index 4de3caadb..724e94bb8 100644 Binary files a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.png and b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.png differ diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.svg b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.svg index 71217763d..ca9d72d89 100644 --- a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.svg +++ b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.svg @@ -27,24 +27,24 @@ - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + @@ -59,27 +59,27 @@ - + - - - - - - - - + + + + + + + + - - + + - - - - - + + + + + @@ -91,28 +91,28 @@ - + - - + + - - + + - + - + - - + + - + - + @@ -171,25 +171,31 @@ 2023 0 -200 -400 +200 +400 +600 - - + + + 0 -200 -400 +200 +400 +600 - - + + + 0 -200 -400 +200 +400 +600 - - + + + Publication year Number of libraries (cumulative sum) @@ -237,7 +243,7 @@ Illumina HiSeq 1500 AB 3730xL Genetic Analyzer NextSeq 2000 -Grouping: instrument model. Updated: 2024-04-08 +Grouping: instrument model. Updated: 2024-10-03 Published libraries per year License: CC-BY 4.0. diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.png b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.png index 8f13d2d31..fb211f412 100644 Binary files a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.png and b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.png differ diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.svg b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.svg index 57175392d..21ff12915 100644 --- a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.svg +++ b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.svg @@ -45,28 +45,28 @@ - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + @@ -89,34 +89,34 @@ - + - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -147,26 +147,26 @@ - + - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + @@ -225,37 +225,37 @@ 2023 0 -500 -1 000 -1 500 -2 000 +500 +1 000 +1 500 +2 000 - - - - + + + + 0 -500 -1 000 -1 500 -2 000 +500 +1 000 +1 500 +2 000 - - - - + + + + 0 -500 -1 000 -1 500 -2 000 +500 +1 000 +1 500 +2 000 - - - - + + + + Publication year Number of libraries (cumulative sum) @@ -263,7 +263,7 @@ PAIRED SINGLE -Grouping: lib. layout. Updated: 2024-04-08 +Grouping: lib. layout. Updated: 2024-10-03 Published libraries per year License: CC-BY 4.0. diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.png b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.png index df15bea67..aaa310b13 100644 Binary files a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.png and b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.png differ diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.svg b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.svg index ac75f8f69..4abcc3dba 100644 --- a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.svg +++ b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.svg @@ -63,49 +63,49 @@ - + - - + + - - - + + + - - - + + + - - - + + + - - - + + + - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + @@ -117,86 +117,86 @@ - + - - + + - - + + - - + + - - + + - - + + - - - + + + - - - + + + - - - - + + + + - - + + - - - + + + - - - - + + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -247,46 +247,46 @@ - + - + - - + + - - + + - - + + - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + @@ -345,31 +345,37 @@ 2023 0 -500 -1 000 -1 500 +500 +1 000 +1 500 +2 000 - - - + + + + 0 -500 -1 000 -1 500 +500 +1 000 +1 500 +2 000 - - - + + + + 0 -500 -1 000 -1 500 +500 +1 000 +1 500 +2 000 - - - + + + + Publication year Number of libraries (cumulative sum) @@ -381,7 +387,7 @@ none full-udg half-udg -Grouping: lib. treatment. Updated: 2024-04-08 +Grouping: lib. treatment. Updated: 2024-10-03 Published libraries per year License: CC-BY 4.0. diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.png b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.png index 956596248..f495a4a29 100644 Binary files a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.png and b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.png differ diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.svg b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.svg index 4758cba77..de6a9e684 100644 --- a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.svg +++ b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.svg @@ -54,38 +54,38 @@ - + - - + + - - + + - - + + - - + + - - + + - - + + - - - - - - - - - - - - + + + + + + + + + + + + @@ -97,66 +97,66 @@ - + - + - + - + - + - - + + - - + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -197,36 +197,36 @@ - + - + - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + @@ -285,31 +285,37 @@ 2023 0 -500 -1 000 -1 500 +500 +1 000 +1 500 +2 000 - - - + + + + 0 -500 -1 000 -1 500 +500 +1 000 +1 500 +2 000 - - - + + + + 0 -500 -1 000 -1 500 +500 +1 000 +1 500 +2 000 - - - + + + + Publication year Number of libraries (cumulative sum) @@ -319,7 +325,7 @@ unknown double single -Grouping: strand type. Updated: 2024-04-08 +Grouping: strand type. Updated: 2024-10-03 Published libraries per year License: CC-BY 4.0. diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Reads.png b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Reads.png index 9c713aa5a..be13f8217 100644 Binary files a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Reads.png and b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Reads.png differ diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Reads.svg b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Reads.svg index 2b4a27575..2daf2835c 100644 --- a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Reads.svg +++ b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Reads.svg @@ -36,17 +36,17 @@ - - - - - - - - - - - + + + + + + + + + + + @@ -65,16 +65,16 @@ - - - - - - - - - - + + + + + + + + + + @@ -97,16 +97,16 @@ - - - - - - - - - - + + + + + + + + + + @@ -165,34 +165,34 @@ 2023 0B -20B -40B -60B +20B +40B +60B - - - + + + 0B -20B -40B -60B +20B +40B +60B - - - + + + 0B -20B -40B -60B +20B +40B +60B - - - + + + Publication year Number of reads (cumulative sum) -Updated: 2024-04-08 +Updated: 2024-10-03 Published reads per year License: CC-BY 4.0. diff --git a/assets/images/figures/AncientMetagenomeDir-Publication_Timeline.svg b/assets/images/figures/AncientMetagenomeDir-Publication_Timeline.svg index c65ef084d..e51882913 100644 --- a/assets/images/figures/AncientMetagenomeDir-Publication_Timeline.svg +++ b/assets/images/figures/AncientMetagenomeDir-Publication_Timeline.svg @@ -36,7 +36,7 @@ - + @@ -58,10 +58,10 @@ - + - + @@ -80,7 +80,7 @@ - + @@ -172,7 +172,7 @@ Publication year Number of publications -Updated: 2024-04-08 +Updated: 2024-10-03 Publications per year License: CC-BY 4.0. diff --git a/assets/images/figures/AncientMetagenomeDir-Sample_AgeTimeline.svg b/assets/images/figures/AncientMetagenomeDir-Sample_AgeTimeline.svg index b246b5a5f..13119f0cf 100644 --- a/assets/images/figures/AncientMetagenomeDir-Sample_AgeTimeline.svg +++ b/assets/images/figures/AncientMetagenomeDir-Sample_AgeTimeline.svg @@ -28,20 +28,20 @@ - - - - - - - - - - - - - - + + + + + + + + + + + + + + @@ -52,17 +52,17 @@ - - - - - - - - - - - + + + + + + + + + + + @@ -73,21 +73,21 @@ - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + @@ -133,23 +133,29 @@ 10,000 100,000 -100 -200 - - +100 +200 +300 + + + -100 -200 - - +100 +200 +300 + + + -100 -200 - - +100 +200 +300 + + + Years before present Samples (n) -Updated: 2024-04-08 +Updated: 2024-10-03 Age distribution of samples License: CC-BY 4.0. diff --git a/assets/images/figures/AncientMetagenomeDir-Sample_Map.svg b/assets/images/figures/AncientMetagenomeDir-Sample_Map.svg index d5cb3477c..dad5e1d81 100644 --- a/assets/images/figures/AncientMetagenomeDir-Sample_Map.svg +++ b/assets/images/figures/AncientMetagenomeDir-Sample_Map.svg @@ -1659,6 +1659,15 @@ + + + + + + + + + @@ -1792,6 +1801,7 @@ + @@ -1907,6 +1917,7 @@ + @@ -3626,8 +3637,21 @@ + + + + + + + + + + + + + @@ -3778,6 +3802,7 @@ + @@ -3805,7 +3830,9 @@ + + @@ -3859,11 +3886,13 @@ + + @@ -3941,7 +3970,8 @@ - + + @@ -5621,6 +5651,7 @@ + @@ -5750,7 +5781,7 @@ Longitude Latitude -Updated: 2024-04-08 +Updated: 2024-10-03 Geographic locations of samples License: CC-BY 4.0. diff --git a/assets/images/figures/AncientMetagenomeDir-Sample_Timeline.svg b/assets/images/figures/AncientMetagenomeDir-Sample_Timeline.svg index 8a4e73b47..f9dbc2e07 100644 --- a/assets/images/figures/AncientMetagenomeDir-Sample_Timeline.svg +++ b/assets/images/figures/AncientMetagenomeDir-Sample_Timeline.svg @@ -36,16 +36,16 @@ - - - - - - - - - - + + + + + + + + + + @@ -57,26 +57,26 @@ - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + @@ -97,16 +97,16 @@ - - - - - - - - - - + + + + + + + + + + @@ -165,28 +165,34 @@ 2023 0 -500 -1 000 +500 +1 000 +1 500 - - + + + 0 -500 -1 000 +500 +1 000 +1 500 - - + + + 0 -500 -1 000 +500 +1 000 +1 500 - - + + + Publication year Number of samples (cumulative sum) -Updated: 2024-04-08 +Updated: 2024-10-03 Published samples per year License: CC-BY 4.0.