From 9b9ed06719fbb39d8bef8eacd9c2eb37f0983a34 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Alex=20H=C3=BCbner?= Date: Tue, 30 Jul 2024 14:32:33 +0200 Subject: [PATCH 1/6] Add Austin2024 --- ...entmetagenome-hostassociated_libraries.tsv | 47 +++++++++++++++++++ ...cientmetagenome-hostassociated_samples.tsv | 39 +++++++++++++++ 2 files changed, 86 insertions(+) diff --git a/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv b/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv index 264244f77..e1625ce61 100644 --- a/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv +++ b/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv @@ -2560,3 +2560,50 @@ Wright2024 2024 10.1016/j.jasrep.2024.104510 ROM_5C SRA PRJNA704183 SRS8307107 R Wright2024 2024 10.1016/j.jasrep.2024.104510 ROM_5D SRA PRJNA704183 SRS8307108 ROM_5D double KAPA HiFi HotStart DNA none NA NextSeq 500 PAIRED WGS 17373684 SRR13769011 ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/011/SRR13769011/SRR13769011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/011/SRR13769011/SRR13769011_2.fastq.gz 9c3a01d9f356fc153a1e57265435b1b4;3ab8bffe5e74c31c8c1836b1a3930515 622824692;622800278 Wright2024 2024 10.1016/j.jasrep.2024.104510 ROM_10D SRA PRJNA704183 SRS8307110 ROM_10D double KAPA HiFi HotStart DNA none NA NextSeq 500 PAIRED WGS 18815387 SRR13769009 ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/009/SRR13769009/SRR13769009_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/009/SRR13769009/SRR13769009_2.fastq.gz 4e29507f47e163c4a16f64d90fb524f6;ce88879fe292db732dc173eb9536947b 746940101;743714612 Wright2024 2024 10.1016/j.jasrep.2024.104510 ROM_9C SRA PRJNA704183 SRS8307109 ROM_9C double KAPA HiFi HotStart DNA none NA NextSeq 500 PAIRED WGS 21305627 SRR13769010 ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/010/SRR13769010/SRR13769010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/010/SRR13769010/SRR13769010_2.fastq.gz a98a7030ce982a184d2fffda92522465;0d2e767d81008e599b4ad355d906e880 741768144;697486536 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 32 S SRA PRJNA1056444 SRS19976951 ARP32S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 10583702 SRR27336765 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/065/SRR27336765/SRR27336765.fastq.gz 86c06dfd31dbd1412937951105978220 318365820 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 1 T SRA PRJNA1056444 SRS19976950 ARP1T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 7075877 SRR27336766 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/066/SRR27336766/SRR27336766.fastq.gz 97b9e10c21fbfbea592b9a4b22f00d13 185529395 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 3 T SRA PRJNA1056444 SRS19976946 ARP3T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 9576143 SRR27336770 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/070/SRR27336770/SRR27336770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/070/SRR27336770/SRR27336770_2.fastq.gz 326db8fdd6b40b9ad021bbd23ba2e6a2;5871c1a7c0bc58f61339ff1acaaafd48 288936031;290833524 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 4 T SRA PRJNA1056444 SRS19976945 ARP4T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 9104658 SRR27336771 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/071/SRR27336771/SRR27336771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/071/SRR27336771/SRR27336771_2.fastq.gz 3db2a3db9e74d314bfff3624d4258a43;26add8ca30f1bb1b5e272d02a6d391ea 263953252;266305253 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 36 S SRA PRJNA1056444 SRS19976944 ARP36S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 10133387 SRR27336772 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/072/SRR27336772/SRR27336772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/072/SRR27336772/SRR27336772_2.fastq.gz 00f6214e52ea308552b531f6b98e9dab;2c8e65014a2c29c1af916788f329590a 282412174;283669657 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 37 S SRA PRJNA1056444 SRS19976943 ARP37S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8053548 SRR27336773 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/073/SRR27336773/SRR27336773.fastq.gz 2bc9540a7876b2cde37de134a43fd1ab 224079948 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 38 S SRA PRJNA1056444 SRS19976941 ARP38S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 6981629 SRR27336775 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/075/SRR27336775/SRR27336775.fastq.gz 86a0eb29d15d480f1d21d6f0d971fe0b 203661003 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 23 S SRA PRJNA1056444 SRS19976936 ARP23S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 7611865 SRR27336780 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/080/SRR27336780/SRR27336780.fastq.gz c9b2257bd057a3b01ff86da451667486 205937297 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 7 T SRA PRJNA1056444 SRS19976933 ARP7T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 8684182 SRR27336783 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/083/SRR27336783/SRR27336783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/083/SRR27336783/SRR27336783_2.fastq.gz bdccf8fd7f3fb185704c5a662d67fabd;5a47a6b474b63fb1b6c9da8dfbfe107a 241815809;244071739 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 25 S SRA PRJNA1056444 SRS19976931 ARP25S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 6273958 SRR27336785 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/085/SRR27336785/SRR27336785.fastq.gz 8da80aa0fa472062b69ae625dc1cce90 160665516 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 11 T SRA PRJNA1056444 SRS19976930 ARP11T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 72211981 SRR27336786 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/086/SRR27336786/SRR27336786_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/086/SRR27336786/SRR27336786_2.fastq.gz ea1809fe3a24f0f74adf662851d4f8a2;06e6988b6d49ea025e711fa9ba03db9e 2893932572;2897656027 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 10 T SRA PRJNA1056444 SRS19976925 ARP10T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 9554303 SRR27336791 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/091/SRR27336791/SRR27336791.fastq.gz f84854ad4c74b80c963460f7caebe1e4 295056642 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 14 T SRA PRJNA1056444 SRS19976924 ARP14T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 10419069 SRR27336792 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/092/SRR27336792/SRR27336792.fastq.gz 180d4ad87c855013366f1eea285c519c 315536714 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 15 T SRA PRJNA1056444 SRS19976923 ARP15T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 10372324 SRR27336793 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/093/SRR27336793/SRR27336793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/093/SRR27336793/SRR27336793_2.fastq.gz af2cae2e025fe7f4283519847f4ed592;a3d0d5d6e54a6cada74b5c4a7848f15d 318422552;320693152 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 27 S SRA PRJNA1056444 SRS19976921 ARP27S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 7641407 SRR27336795 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/095/SRR27336795/SRR27336795.fastq.gz 870b420189b9080492568a9702ea91dd 190215393 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 33 S SRA PRJNA1056444 SRS19976917 ARP33S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8021874 SRR27336799 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/099/SRR27336799/SRR27336799.fastq.gz 0e5051e39f7cc54918d191b7cf1142c6 213857106 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 18 T SRA PRJNA1056444 SRS19976916 ARP18T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 10186325 SRR27336800 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR27336800/SRR27336800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR27336800/SRR27336800_2.fastq.gz 453a68f17e3c9720e72800ecdd8cce98;30395af6cc1dbd4576bbea5a4abbf5d2 290755947;292840607 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 5 T SRA PRJNA1056444 SRS19976915 ARP5T_Capture2 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 88633180 SRR27336801 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/001/SRR27336801/SRR27336801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/001/SRR27336801/SRR27336801_2.fastq.gz e79fa0ec65dd5b5abcd34d67d1468996;d6afa9e80a0880b27b936cf91e3fbe6b 3933894707;4075546217 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 20 T SRA PRJNA1056444 SRS19976909 ARP20T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 9667924 SRR27336807 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/007/SRR27336807/SRR27336807.fastq.gz 8e59cd6406b0ee62211464e22329415c 277056845 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 35 S SRA PRJNA1056444 SRS19976949 ARP35S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 9383222 SRR27336767 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/067/SRR27336767/SRR27336767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/067/SRR27336767/SRR27336767_2.fastq.gz 39338257809d5991cd763047f8515a47;75adb63e27a8147ca9087b6262f5e532 258594123;260623611 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 5 T SRA PRJNA1056444 SRS19976939 ARP5T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 91903089 SRR27336777 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/077/SRR27336777/SRR27336777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/077/SRR27336777/SRR27336777_2.fastq.gz 540c37af3b13e41ac5cb4066f7c44ce1;f851cf7468fd6df21778c5f7c0da83fb 3470218229;3349904922 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 31 S SRA PRJNA1056444 SRS19976937 ARP31S_Capture2 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 8275501 SRR27336779 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/079/SRR27336779/SRR27336779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/079/SRR27336779/SRR27336779_2.fastq.gz 841e50b2b8104af2cf0553caedf50874;42f2c6bd966e29d68d55d801b5e83036 358219757;369715789 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 26 S SRA PRJNA1056444 SRS19976929 ARP26S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 8981889 SRR27336787 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/087/SRR27336787/SRR27336787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/087/SRR27336787/SRR27336787_2.fastq.gz 98f7e03fb719986d765d04a619967ff2;a276019c4bdda1666f8a6ef7b818e4c5 246416941;248804630 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 12 T SRA PRJNA1056444 SRS19976927 ARP12T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8555439 SRR27336789 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/089/SRR27336789/SRR27336789.fastq.gz 6267d838e47b98d1f73d0c6208e5bf30 225597224 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 1 T SRA PRJNA1056444 SRS19976926 ARP1T_Capture2 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 24111512 SRR27336790 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/090/SRR27336790/SRR27336790_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/090/SRR27336790/SRR27336790_2.fastq.gz d29df076942fec406da58f9a4200ef41;f48f59654b6c127e891d2bb13fa06bdd 852107112;904664603 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 16 T SRA PRJNA1056444 SRS19976922 ARP16T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 10531650 SRR27336794 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/094/SRR27336794/SRR27336794.fastq.gz 17bc773fede21903793fe4aa68ddfbfa 278502450 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 17 T SRA PRJNA1056444 SRS19976920 ARP17T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8565580 SRR27336796 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/096/SRR27336796/SRR27336796.fastq.gz 1681cef3418c4f2d0db23066b9b81065 223727317 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 30 S SRA PRJNA1056444 SRS19976913 ARP30S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 84657481 SRR27336803 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/003/SRR27336803/SRR27336803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/003/SRR27336803/SRR27336803_2.fastq.gz b9b539963408a9f69ab81647b3eda0cd;f0fe648bb898843ebc24667b87c3538c 3226019328;3139472170 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 28 S SRA PRJNA1056444 SRS19976912 ARP28S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 12022723 SRR27336804 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/004/SRR27336804/SRR27336804.fastq.gz 02239626ccb229466112e938c89d69c9 367363663 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 19 T SRA PRJNA1056444 SRS19976910 ARP19T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 10756095 SRR27336806 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/006/SRR27336806/SRR27336806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/006/SRR27336806/SRR27336806_2.fastq.gz f85e92692a446fea2cb7964ff0304dbb;8f2eadc1e01e53af8b88056416537d11 339397625;341715031 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 1 T SRA PRJNA1056444 SRS19976908 ARP1T_Capture1 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 24491760 SRR27336808 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/008/SRR27336808/SRR27336808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/008/SRR27336808/SRR27336808_2.fastq.gz 6c733dfb4663b6394c6e4b26266b6f74;2e0da67cd1d5041ce0800e054b3be109 1003104458;956061410 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 9 T SRA PRJNA1056444 SRS19976907 ARP9T_Capture1 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 18532852 SRR27336809 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/009/SRR27336809/SRR27336809_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/009/SRR27336809/SRR27336809_2.fastq.gz ec5b88a38921110596c81c9e43eca8f7;bac841db0cd1580f12c2ee0b88269feb 657205738;654981339 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 3 T SRA PRJNA1056444 SRS19976904 ARP3T_Capture2 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 64816475 SRR27336812 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/012/SRR27336812/SRR27336812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/012/SRR27336812/SRR27336812_2.fastq.gz ae515ed3808fe54912b9d54819d58f86;4b5dbf81fbfb28992032ae05bb519fcc 3253932975;3355189342 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 9 T SRA PRJNA1056444 SRS19976959 ARP9T_Capture2 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 7508849 SRR27336757 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/057/SRR27336757/SRR27336757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/057/SRR27336757/SRR27336757_2.fastq.gz fbbb8d4e14cfdf4edf7f95b4b9a5e06f;bceb3b64b23103e1e44efec9f425257a 319162716;341641956 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 2 T SRA PRJNA1056444 SRS19976947 ARP2T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 8667136 SRR27336769 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/069/SRR27336769/SRR27336769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/069/SRR27336769/SRR27336769_2.fastq.gz 9bba995fd448739b035212fc8fe68249;5a271aab1da83f01eec42b60f613885e 241204366;242611835 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 29 S SRA PRJNA1056444 SRS19976942 ARP29S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 6609417 SRR27336774 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/074/SRR27336774/SRR27336774.fastq.gz e3195d19e13cd3bfbb31e7544ea0de72 174579176 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 39 S SRA PRJNA1056444 SRS19976940 ARP39S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8256172 SRR27336776 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/076/SRR27336776/SRR27336776.fastq.gz 27c6ef2768e932e832de6fe53de6832e 192691555 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 22 S SRA PRJNA1056444 SRS19976938 ARP22S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 6669513 SRR27336778 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/078/SRR27336778/SRR27336778.fastq.gz 6d4c67036bd21e74008e9a497c1d1ed5 169642431 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 24 S SRA PRJNA1056444 SRS19976935 ARP24S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 6643224 SRR27336781 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/081/SRR27336781/SRR27336781.fastq.gz e0f210923464c9398d90e1e9d18ad31d 169289697 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 6 T SRA PRJNA1056444 SRS19976934 ARP6T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8364558 SRR27336782 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/082/SRR27336782/SRR27336782.fastq.gz b1b10867393cadd19b6c8ac960d5f29a 220240645 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 8 T SRA PRJNA1056444 SRS19976932 ARP8T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 9220925 SRR27336784 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/084/SRR27336784/SRR27336784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/084/SRR27336784/SRR27336784_2.fastq.gz 96bd5a3fea22fcbbe057471997989a6d;4d1fed2b818a945fdadc6f5ea39c0ba0 275741358;277662373 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 9 T SRA PRJNA1056444 SRS19976928 ARP9T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 10355611 SRR27336788 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/088/SRR27336788/SRR27336788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/088/SRR27336788/SRR27336788_2.fastq.gz 06d08f40189e312701b9a0a804e171e9;a3c7c0a57259dd2701a40e43e87e0800 281990349;285146396 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 21 S SRA PRJNA1056444 SRS19976919 ARP21S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 9230033 SRR27336797 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/097/SRR27336797/SRR27336797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/097/SRR27336797/SRR27336797_2.fastq.gz 1d690bde3779209972ecf76372a2756b;9c26a02303066236b6cae3e13451b20a 282404086;284232595 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 31 S SRA PRJNA1056444 SRS19976918 ARP31S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 96719984 SRR27336798 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_2.fastq.gz b88b1d8e4afd3b15ed74b491e1036e4b;6ae95f827831eeb1ce02e91a0e31babc 3651086684;3545748908 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 13 T SRA PRJNA1056444 SRS19976914 ARP13T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 7421314 SRR27336802 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/002/SRR27336802/SRR27336802.fastq.gz 5810e74da314eabe751ecec2030edd0c 202442256 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 34 S SRA PRJNA1056444 SRS19976911 ARP34S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 9941233 SRR27336805 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/005/SRR27336805/SRR27336805.fastq.gz 6b803041313b9c4ecc29a83ee05dd7f3 255778837 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 18 T SRA PRJNA1056444 SRS19976903 ARP18T_Capture2 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 162722597 SRR27336813 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/013/SRR27336813/SRR27336813_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/013/SRR27336813/SRR27336813_2.fastq.gz 239414945454868a2ac3a88a363b132a;d1e5c7b00c633b4062377f776336b10c 7580760025;7869659424 diff --git a/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv b/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv index eb1efdaa6..d2fb42c34 100644 --- a/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv +++ b/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv @@ -1430,3 +1430,42 @@ Wright2024 2024 10.1016/j.jasrep.2024.104510 Histria 44.55 28.78 Romania ROM_5C Wright2024 2024 10.1016/j.jasrep.2024.104510 Histria 44.55 28.78 Romania ROM_5D Homo sapiens 1600 10.1016/j.jasrep.2024.104510 oral dentine SRA PRJNA704183 SRS8307108 Wright2024 2024 10.1016/j.jasrep.2024.104510 Histria 44.55 28.78 Romania ROM_10D Homo sapiens 1600 10.1016/j.jasrep.2024.104510 oral dentine SRA PRJNA704183 SRS8307110 Wright2024 2024 10.1016/j.jasrep.2024.104510 Histria 44.55 28.78 Romania ROM_9C Homo sapiens 1600 10.1016/j.jasrep.2024.104510 oral dental calculus SRA PRJNA704183 SRS8307109 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 1 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976950,SRS19976926,SRS19976908 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 10 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976925 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 11 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976930 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 12 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976927 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 13 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976914 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 14 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976924 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 15 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976923 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 16 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976922 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 17 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976920 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 18 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976903,SRS19976916 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 19 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976910 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 2 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976947 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 20 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976909 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 3 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976946,SRS19976904 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 4 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976945 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 5 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976915,SRS19976939 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 6 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976934 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 7 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976933 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 8 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976932 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 9 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976959,SRS19976928,SRS19976907 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 21 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976919 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 30 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976913 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 31 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976918,SRS19976937 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 32 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976951 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 33 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976917 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 34 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976911 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 35 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976949 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 36 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976944 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 37 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976943 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 38 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976941 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 39 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976940 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 22 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976938 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 23 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976936 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 24 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976935 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 25 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976931 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 26 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976929 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 27 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976921 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 28 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976912 +Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 29 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976942 From e6263e729da652bd380698a22225ec37bbfa6471 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Alex=20H=C3=BCbner?= Date: Tue, 30 Jul 2024 14:33:53 +0200 Subject: [PATCH 2/6] Update CHANGELOG --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index e9b2029cc..5841b7b54 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,6 +11,8 @@ and this project follows to [Calendar Versioning](https://calver.org/). #### Ancient Metagenome: Host Associated +- Austin 2024 10.1038/s41598-024-64818-7 (added by @alexhbnr) + #### Ancient Single Genome: Host Associated #### Ancient Metagenome: Environmental From 7007b2b5a359671bc24d1d748bb608a4c7608400 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Tue, 30 Jul 2024 14:41:49 +0200 Subject: [PATCH 3/6] Bump AMDirT version --- .github/workflows/autofill.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/autofill.yml b/.github/workflows/autofill.yml index afb141564..f60d8662d 100644 --- a/.github/workflows/autofill.yml +++ b/.github/workflows/autofill.yml @@ -38,7 +38,7 @@ jobs: - name: Install dependencies run: | python -m pip install --upgrade pip - pip install amdirt==1.6.1 + pip install amdirt==1.6.2 pip install jsonschema==4.17.0 # Get context of PR... From 9629a6dba74e8cc4d5892c57ab8319633655822c Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Tue, 30 Jul 2024 14:41:58 +0200 Subject: [PATCH 4/6] Bump AMDirT version --- .github/workflows/check_dataset.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/check_dataset.yml b/.github/workflows/check_dataset.yml index daa7d138e..9bcdc59c9 100644 --- a/.github/workflows/check_dataset.yml +++ b/.github/workflows/check_dataset.yml @@ -16,7 +16,7 @@ jobs: - name: Install dependencies run: | python -m pip install --upgrade pip - pip install amdirt==1.6.1 + pip install amdirt==1.6.2 pip install jsonschema==4.17.0 - name: Make validation results directory run: mkdir validation/ From b1cf3bdd4188aebfe1deae90d61d5405f77d8d94 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Alex=20H=C3=BCbner?= Date: Wed, 25 Sep 2024 16:24:26 +0200 Subject: [PATCH 5/6] Update site name and sample age doi, remove captured samples --- ...entmetagenome-hostassociated_libraries.tsv | 8 -- ...cientmetagenome-hostassociated_samples.tsv | 78 +++++++++---------- 2 files changed, 39 insertions(+), 47 deletions(-) diff --git a/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv b/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv index e1625ce61..1b8e213ad 100644 --- a/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv +++ b/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv @@ -2577,23 +2577,16 @@ Austin2024 2024 10.1038/s41598-024-64818-7 ARP 15 T SRA PRJNA1056444 SRS19976923 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 27 S SRA PRJNA1056444 SRS19976921 ARP27S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 7641407 SRR27336795 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/095/SRR27336795/SRR27336795.fastq.gz 870b420189b9080492568a9702ea91dd 190215393 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 33 S SRA PRJNA1056444 SRS19976917 ARP33S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8021874 SRR27336799 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/099/SRR27336799/SRR27336799.fastq.gz 0e5051e39f7cc54918d191b7cf1142c6 213857106 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 18 T SRA PRJNA1056444 SRS19976916 ARP18T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 10186325 SRR27336800 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR27336800/SRR27336800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR27336800/SRR27336800_2.fastq.gz 453a68f17e3c9720e72800ecdd8cce98;30395af6cc1dbd4576bbea5a4abbf5d2 290755947;292840607 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 5 T SRA PRJNA1056444 SRS19976915 ARP5T_Capture2 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 88633180 SRR27336801 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/001/SRR27336801/SRR27336801_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/001/SRR27336801/SRR27336801_2.fastq.gz e79fa0ec65dd5b5abcd34d67d1468996;d6afa9e80a0880b27b936cf91e3fbe6b 3933894707;4075546217 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 20 T SRA PRJNA1056444 SRS19976909 ARP20T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 9667924 SRR27336807 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/007/SRR27336807/SRR27336807.fastq.gz 8e59cd6406b0ee62211464e22329415c 277056845 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 35 S SRA PRJNA1056444 SRS19976949 ARP35S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 9383222 SRR27336767 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/067/SRR27336767/SRR27336767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/067/SRR27336767/SRR27336767_2.fastq.gz 39338257809d5991cd763047f8515a47;75adb63e27a8147ca9087b6262f5e532 258594123;260623611 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 5 T SRA PRJNA1056444 SRS19976939 ARP5T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 91903089 SRR27336777 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/077/SRR27336777/SRR27336777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/077/SRR27336777/SRR27336777_2.fastq.gz 540c37af3b13e41ac5cb4066f7c44ce1;f851cf7468fd6df21778c5f7c0da83fb 3470218229;3349904922 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 31 S SRA PRJNA1056444 SRS19976937 ARP31S_Capture2 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 8275501 SRR27336779 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/079/SRR27336779/SRR27336779_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/079/SRR27336779/SRR27336779_2.fastq.gz 841e50b2b8104af2cf0553caedf50874;42f2c6bd966e29d68d55d801b5e83036 358219757;369715789 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 26 S SRA PRJNA1056444 SRS19976929 ARP26S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 8981889 SRR27336787 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/087/SRR27336787/SRR27336787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/087/SRR27336787/SRR27336787_2.fastq.gz 98f7e03fb719986d765d04a619967ff2;a276019c4bdda1666f8a6ef7b818e4c5 246416941;248804630 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 12 T SRA PRJNA1056444 SRS19976927 ARP12T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8555439 SRR27336789 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/089/SRR27336789/SRR27336789.fastq.gz 6267d838e47b98d1f73d0c6208e5bf30 225597224 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 1 T SRA PRJNA1056444 SRS19976926 ARP1T_Capture2 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 24111512 SRR27336790 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/090/SRR27336790/SRR27336790_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/090/SRR27336790/SRR27336790_2.fastq.gz d29df076942fec406da58f9a4200ef41;f48f59654b6c127e891d2bb13fa06bdd 852107112;904664603 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 16 T SRA PRJNA1056444 SRS19976922 ARP16T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 10531650 SRR27336794 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/094/SRR27336794/SRR27336794.fastq.gz 17bc773fede21903793fe4aa68ddfbfa 278502450 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 17 T SRA PRJNA1056444 SRS19976920 ARP17T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8565580 SRR27336796 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/096/SRR27336796/SRR27336796.fastq.gz 1681cef3418c4f2d0db23066b9b81065 223727317 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 30 S SRA PRJNA1056444 SRS19976913 ARP30S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 84657481 SRR27336803 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/003/SRR27336803/SRR27336803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/003/SRR27336803/SRR27336803_2.fastq.gz b9b539963408a9f69ab81647b3eda0cd;f0fe648bb898843ebc24667b87c3538c 3226019328;3139472170 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 28 S SRA PRJNA1056444 SRS19976912 ARP28S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 12022723 SRR27336804 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/004/SRR27336804/SRR27336804.fastq.gz 02239626ccb229466112e938c89d69c9 367363663 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 19 T SRA PRJNA1056444 SRS19976910 ARP19T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 10756095 SRR27336806 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/006/SRR27336806/SRR27336806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/006/SRR27336806/SRR27336806_2.fastq.gz f85e92692a446fea2cb7964ff0304dbb;8f2eadc1e01e53af8b88056416537d11 339397625;341715031 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 1 T SRA PRJNA1056444 SRS19976908 ARP1T_Capture1 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 24491760 SRR27336808 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/008/SRR27336808/SRR27336808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/008/SRR27336808/SRR27336808_2.fastq.gz 6c733dfb4663b6394c6e4b26266b6f74;2e0da67cd1d5041ce0800e054b3be109 1003104458;956061410 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 9 T SRA PRJNA1056444 SRS19976907 ARP9T_Capture1 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 18532852 SRR27336809 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/009/SRR27336809/SRR27336809_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/009/SRR27336809/SRR27336809_2.fastq.gz ec5b88a38921110596c81c9e43eca8f7;bac841db0cd1580f12c2ee0b88269feb 657205738;654981339 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 3 T SRA PRJNA1056444 SRS19976904 ARP3T_Capture2 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 64816475 SRR27336812 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/012/SRR27336812/SRR27336812_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/012/SRR27336812/SRR27336812_2.fastq.gz ae515ed3808fe54912b9d54819d58f86;4b5dbf81fbfb28992032ae05bb519fcc 3253932975;3355189342 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 9 T SRA PRJNA1056444 SRS19976959 ARP9T_Capture2 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 7508849 SRR27336757 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/057/SRR27336757/SRR27336757_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/057/SRR27336757/SRR27336757_2.fastq.gz fbbb8d4e14cfdf4edf7f95b4b9a5e06f;bceb3b64b23103e1e44efec9f425257a 319162716;341641956 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 2 T SRA PRJNA1056444 SRS19976947 ARP2T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 8667136 SRR27336769 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/069/SRR27336769/SRR27336769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/069/SRR27336769/SRR27336769_2.fastq.gz 9bba995fd448739b035212fc8fe68249;5a271aab1da83f01eec42b60f613885e 241204366;242611835 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 29 S SRA PRJNA1056444 SRS19976942 ARP29S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 6609417 SRR27336774 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/074/SRR27336774/SRR27336774.fastq.gz e3195d19e13cd3bfbb31e7544ea0de72 174579176 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 39 S SRA PRJNA1056444 SRS19976940 ARP39S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8256172 SRR27336776 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/076/SRR27336776/SRR27336776.fastq.gz 27c6ef2768e932e832de6fe53de6832e 192691555 @@ -2606,4 +2599,3 @@ Austin2024 2024 10.1038/s41598-024-64818-7 ARP 21 S SRA PRJNA1056444 SRS19976919 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 31 S SRA PRJNA1056444 SRS19976918 ARP31S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 96719984 SRR27336798 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_2.fastq.gz b88b1d8e4afd3b15ed74b491e1036e4b;6ae95f827831eeb1ce02e91a0e31babc 3651086684;3545748908 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 13 T SRA PRJNA1056444 SRS19976914 ARP13T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 7421314 SRR27336802 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/002/SRR27336802/SRR27336802.fastq.gz 5810e74da314eabe751ecec2030edd0c 202442256 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 34 S SRA PRJNA1056444 SRS19976911 ARP34S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 9941233 SRR27336805 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/005/SRR27336805/SRR27336805.fastq.gz 6b803041313b9c4ecc29a83ee05dd7f3 255778837 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 18 T SRA PRJNA1056444 SRS19976903 ARP18T_Capture2 double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED Targeted-Capture 162722597 SRR27336813 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/013/SRR27336813/SRR27336813_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/013/SRR27336813/SRR27336813_2.fastq.gz 239414945454868a2ac3a88a363b132a;d1e5c7b00c633b4062377f776336b10c 7580760025;7869659424 diff --git a/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv b/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv index d2fb42c34..72c69176e 100644 --- a/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv +++ b/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv @@ -1430,42 +1430,42 @@ Wright2024 2024 10.1016/j.jasrep.2024.104510 Histria 44.55 28.78 Romania ROM_5C Wright2024 2024 10.1016/j.jasrep.2024.104510 Histria 44.55 28.78 Romania ROM_5D Homo sapiens 1600 10.1016/j.jasrep.2024.104510 oral dentine SRA PRJNA704183 SRS8307108 Wright2024 2024 10.1016/j.jasrep.2024.104510 Histria 44.55 28.78 Romania ROM_10D Homo sapiens 1600 10.1016/j.jasrep.2024.104510 oral dentine SRA PRJNA704183 SRS8307110 Wright2024 2024 10.1016/j.jasrep.2024.104510 Histria 44.55 28.78 Romania ROM_9C Homo sapiens 1600 10.1016/j.jasrep.2024.104510 oral dental calculus SRA PRJNA704183 SRS8307109 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 1 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976950,SRS19976926,SRS19976908 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 10 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976925 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 11 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976930 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 12 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976927 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 13 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976914 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 14 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976924 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 15 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976923 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 16 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976922 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 17 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976920 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 18 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976903,SRS19976916 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 19 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976910 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 2 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976947 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 20 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976909 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 3 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976946,SRS19976904 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 4 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976945 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 5 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976915,SRS19976939 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 6 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976934 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 7 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976933 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 8 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976932 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 9 T Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976959,SRS19976928,SRS19976907 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 21 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976919 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 30 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976913 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 31 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976918,SRS19976937 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 32 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976951 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 33 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976917 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 34 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976911 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 35 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976949 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 36 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976944 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 37 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976943 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 38 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976941 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 39 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976940 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 22 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976938 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 23 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976936 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 24 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976935 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 25 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976931 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 26 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976929 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 27 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976921 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 28 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976912 -Austin2024 2024 10.1038/s41598-024-64818-7 Terry Anatomical Collection 38.65 -90.26 USA ARP 29 S Homo sapiens 100 10.1002/ajpa.20135 oral dental calculus SRA PRJNA1056444 SRS19976942 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 1 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976950 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 10 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976925 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 11 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976930 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 12 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976927 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 13 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976914 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 14 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976924 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 15 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976923 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 16 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976922 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 17 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976920 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 18 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976916 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 19 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976910 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 2 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976947 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 20 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976909 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 3 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976946 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 4 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976945 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 5 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976939 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 6 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976934 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 7 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976933 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 8 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976932 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 9 T Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976928 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 21 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976919 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 30 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976913 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 31 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976918 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 32 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976951 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 33 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976917 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 34 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976911 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 35 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976949 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 36 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976944 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 37 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976943 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 38 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976941 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 39 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976940 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 22 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976938 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 23 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976936 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 24 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976935 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 25 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976931 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 26 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976929 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 27 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976921 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 28 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976912 +Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 29 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976942 From a7e04771ce762a77d6cdf099b00e23328d3128e9 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Wed, 2 Oct 2024 10:30:09 +0200 Subject: [PATCH 6/6] Replace NextSeq 1000 to MPI-SHHs NextSeq 500 --- ...entmetagenome-hostassociated_libraries.tsv | 78 +++++++++---------- 1 file changed, 39 insertions(+), 39 deletions(-) diff --git a/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv b/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv index 1b8e213ad..e68b0c279 100644 --- a/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv +++ b/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv @@ -2560,42 +2560,42 @@ Wright2024 2024 10.1016/j.jasrep.2024.104510 ROM_5C SRA PRJNA704183 SRS8307107 R Wright2024 2024 10.1016/j.jasrep.2024.104510 ROM_5D SRA PRJNA704183 SRS8307108 ROM_5D double KAPA HiFi HotStart DNA none NA NextSeq 500 PAIRED WGS 17373684 SRR13769011 ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/011/SRR13769011/SRR13769011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/011/SRR13769011/SRR13769011_2.fastq.gz 9c3a01d9f356fc153a1e57265435b1b4;3ab8bffe5e74c31c8c1836b1a3930515 622824692;622800278 Wright2024 2024 10.1016/j.jasrep.2024.104510 ROM_10D SRA PRJNA704183 SRS8307110 ROM_10D double KAPA HiFi HotStart DNA none NA NextSeq 500 PAIRED WGS 18815387 SRR13769009 ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/009/SRR13769009/SRR13769009_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/009/SRR13769009/SRR13769009_2.fastq.gz 4e29507f47e163c4a16f64d90fb524f6;ce88879fe292db732dc173eb9536947b 746940101;743714612 Wright2024 2024 10.1016/j.jasrep.2024.104510 ROM_9C SRA PRJNA704183 SRS8307109 ROM_9C double KAPA HiFi HotStart DNA none NA NextSeq 500 PAIRED WGS 21305627 SRR13769010 ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/010/SRR13769010/SRR13769010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/010/SRR13769010/SRR13769010_2.fastq.gz a98a7030ce982a184d2fffda92522465;0d2e767d81008e599b4ad355d906e880 741768144;697486536 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 32 S SRA PRJNA1056444 SRS19976951 ARP32S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 10583702 SRR27336765 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/065/SRR27336765/SRR27336765.fastq.gz 86c06dfd31dbd1412937951105978220 318365820 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 1 T SRA PRJNA1056444 SRS19976950 ARP1T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 7075877 SRR27336766 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/066/SRR27336766/SRR27336766.fastq.gz 97b9e10c21fbfbea592b9a4b22f00d13 185529395 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 3 T SRA PRJNA1056444 SRS19976946 ARP3T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 9576143 SRR27336770 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/070/SRR27336770/SRR27336770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/070/SRR27336770/SRR27336770_2.fastq.gz 326db8fdd6b40b9ad021bbd23ba2e6a2;5871c1a7c0bc58f61339ff1acaaafd48 288936031;290833524 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 4 T SRA PRJNA1056444 SRS19976945 ARP4T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 9104658 SRR27336771 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/071/SRR27336771/SRR27336771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/071/SRR27336771/SRR27336771_2.fastq.gz 3db2a3db9e74d314bfff3624d4258a43;26add8ca30f1bb1b5e272d02a6d391ea 263953252;266305253 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 36 S SRA PRJNA1056444 SRS19976944 ARP36S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 10133387 SRR27336772 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/072/SRR27336772/SRR27336772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/072/SRR27336772/SRR27336772_2.fastq.gz 00f6214e52ea308552b531f6b98e9dab;2c8e65014a2c29c1af916788f329590a 282412174;283669657 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 37 S SRA PRJNA1056444 SRS19976943 ARP37S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8053548 SRR27336773 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/073/SRR27336773/SRR27336773.fastq.gz 2bc9540a7876b2cde37de134a43fd1ab 224079948 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 38 S SRA PRJNA1056444 SRS19976941 ARP38S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 6981629 SRR27336775 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/075/SRR27336775/SRR27336775.fastq.gz 86a0eb29d15d480f1d21d6f0d971fe0b 203661003 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 23 S SRA PRJNA1056444 SRS19976936 ARP23S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 7611865 SRR27336780 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/080/SRR27336780/SRR27336780.fastq.gz c9b2257bd057a3b01ff86da451667486 205937297 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 7 T SRA PRJNA1056444 SRS19976933 ARP7T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 8684182 SRR27336783 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/083/SRR27336783/SRR27336783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/083/SRR27336783/SRR27336783_2.fastq.gz bdccf8fd7f3fb185704c5a662d67fabd;5a47a6b474b63fb1b6c9da8dfbfe107a 241815809;244071739 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 25 S SRA PRJNA1056444 SRS19976931 ARP25S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 6273958 SRR27336785 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/085/SRR27336785/SRR27336785.fastq.gz 8da80aa0fa472062b69ae625dc1cce90 160665516 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 11 T SRA PRJNA1056444 SRS19976930 ARP11T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 72211981 SRR27336786 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/086/SRR27336786/SRR27336786_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/086/SRR27336786/SRR27336786_2.fastq.gz ea1809fe3a24f0f74adf662851d4f8a2;06e6988b6d49ea025e711fa9ba03db9e 2893932572;2897656027 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 10 T SRA PRJNA1056444 SRS19976925 ARP10T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 9554303 SRR27336791 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/091/SRR27336791/SRR27336791.fastq.gz f84854ad4c74b80c963460f7caebe1e4 295056642 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 14 T SRA PRJNA1056444 SRS19976924 ARP14T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 10419069 SRR27336792 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/092/SRR27336792/SRR27336792.fastq.gz 180d4ad87c855013366f1eea285c519c 315536714 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 15 T SRA PRJNA1056444 SRS19976923 ARP15T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 10372324 SRR27336793 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/093/SRR27336793/SRR27336793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/093/SRR27336793/SRR27336793_2.fastq.gz af2cae2e025fe7f4283519847f4ed592;a3d0d5d6e54a6cada74b5c4a7848f15d 318422552;320693152 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 27 S SRA PRJNA1056444 SRS19976921 ARP27S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 7641407 SRR27336795 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/095/SRR27336795/SRR27336795.fastq.gz 870b420189b9080492568a9702ea91dd 190215393 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 33 S SRA PRJNA1056444 SRS19976917 ARP33S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8021874 SRR27336799 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/099/SRR27336799/SRR27336799.fastq.gz 0e5051e39f7cc54918d191b7cf1142c6 213857106 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 18 T SRA PRJNA1056444 SRS19976916 ARP18T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 10186325 SRR27336800 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR27336800/SRR27336800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR27336800/SRR27336800_2.fastq.gz 453a68f17e3c9720e72800ecdd8cce98;30395af6cc1dbd4576bbea5a4abbf5d2 290755947;292840607 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 20 T SRA PRJNA1056444 SRS19976909 ARP20T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 9667924 SRR27336807 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/007/SRR27336807/SRR27336807.fastq.gz 8e59cd6406b0ee62211464e22329415c 277056845 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 35 S SRA PRJNA1056444 SRS19976949 ARP35S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 9383222 SRR27336767 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/067/SRR27336767/SRR27336767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/067/SRR27336767/SRR27336767_2.fastq.gz 39338257809d5991cd763047f8515a47;75adb63e27a8147ca9087b6262f5e532 258594123;260623611 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 5 T SRA PRJNA1056444 SRS19976939 ARP5T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 91903089 SRR27336777 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/077/SRR27336777/SRR27336777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/077/SRR27336777/SRR27336777_2.fastq.gz 540c37af3b13e41ac5cb4066f7c44ce1;f851cf7468fd6df21778c5f7c0da83fb 3470218229;3349904922 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 26 S SRA PRJNA1056444 SRS19976929 ARP26S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 8981889 SRR27336787 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/087/SRR27336787/SRR27336787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/087/SRR27336787/SRR27336787_2.fastq.gz 98f7e03fb719986d765d04a619967ff2;a276019c4bdda1666f8a6ef7b818e4c5 246416941;248804630 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 12 T SRA PRJNA1056444 SRS19976927 ARP12T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8555439 SRR27336789 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/089/SRR27336789/SRR27336789.fastq.gz 6267d838e47b98d1f73d0c6208e5bf30 225597224 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 16 T SRA PRJNA1056444 SRS19976922 ARP16T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 10531650 SRR27336794 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/094/SRR27336794/SRR27336794.fastq.gz 17bc773fede21903793fe4aa68ddfbfa 278502450 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 17 T SRA PRJNA1056444 SRS19976920 ARP17T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8565580 SRR27336796 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/096/SRR27336796/SRR27336796.fastq.gz 1681cef3418c4f2d0db23066b9b81065 223727317 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 30 S SRA PRJNA1056444 SRS19976913 ARP30S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 84657481 SRR27336803 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/003/SRR27336803/SRR27336803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/003/SRR27336803/SRR27336803_2.fastq.gz b9b539963408a9f69ab81647b3eda0cd;f0fe648bb898843ebc24667b87c3538c 3226019328;3139472170 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 28 S SRA PRJNA1056444 SRS19976912 ARP28S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 12022723 SRR27336804 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/004/SRR27336804/SRR27336804.fastq.gz 02239626ccb229466112e938c89d69c9 367363663 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 19 T SRA PRJNA1056444 SRS19976910 ARP19T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 10756095 SRR27336806 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/006/SRR27336806/SRR27336806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/006/SRR27336806/SRR27336806_2.fastq.gz f85e92692a446fea2cb7964ff0304dbb;8f2eadc1e01e53af8b88056416537d11 339397625;341715031 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 2 T SRA PRJNA1056444 SRS19976947 ARP2T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 8667136 SRR27336769 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/069/SRR27336769/SRR27336769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/069/SRR27336769/SRR27336769_2.fastq.gz 9bba995fd448739b035212fc8fe68249;5a271aab1da83f01eec42b60f613885e 241204366;242611835 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 29 S SRA PRJNA1056444 SRS19976942 ARP29S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 6609417 SRR27336774 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/074/SRR27336774/SRR27336774.fastq.gz e3195d19e13cd3bfbb31e7544ea0de72 174579176 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 39 S SRA PRJNA1056444 SRS19976940 ARP39S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8256172 SRR27336776 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/076/SRR27336776/SRR27336776.fastq.gz 27c6ef2768e932e832de6fe53de6832e 192691555 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 22 S SRA PRJNA1056444 SRS19976938 ARP22S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 6669513 SRR27336778 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/078/SRR27336778/SRR27336778.fastq.gz 6d4c67036bd21e74008e9a497c1d1ed5 169642431 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 24 S SRA PRJNA1056444 SRS19976935 ARP24S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 6643224 SRR27336781 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/081/SRR27336781/SRR27336781.fastq.gz e0f210923464c9398d90e1e9d18ad31d 169289697 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 6 T SRA PRJNA1056444 SRS19976934 ARP6T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 8364558 SRR27336782 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/082/SRR27336782/SRR27336782.fastq.gz b1b10867393cadd19b6c8ac960d5f29a 220240645 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 8 T SRA PRJNA1056444 SRS19976932 ARP8T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 9220925 SRR27336784 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/084/SRR27336784/SRR27336784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/084/SRR27336784/SRR27336784_2.fastq.gz 96bd5a3fea22fcbbe057471997989a6d;4d1fed2b818a945fdadc6f5ea39c0ba0 275741358;277662373 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 9 T SRA PRJNA1056444 SRS19976928 ARP9T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 10355611 SRR27336788 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/088/SRR27336788/SRR27336788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/088/SRR27336788/SRR27336788_2.fastq.gz 06d08f40189e312701b9a0a804e171e9;a3c7c0a57259dd2701a40e43e87e0800 281990349;285146396 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 21 S SRA PRJNA1056444 SRS19976919 ARP21S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 9230033 SRR27336797 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/097/SRR27336797/SRR27336797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/097/SRR27336797/SRR27336797_2.fastq.gz 1d690bde3779209972ecf76372a2756b;9c26a02303066236b6cae3e13451b20a 282404086;284232595 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 31 S SRA PRJNA1056444 SRS19976918 ARP31S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 PAIRED WGS 96719984 SRR27336798 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_2.fastq.gz b88b1d8e4afd3b15ed74b491e1036e4b;6ae95f827831eeb1ce02e91a0e31babc 3651086684;3545748908 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 13 T SRA PRJNA1056444 SRS19976914 ARP13T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 7421314 SRR27336802 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/002/SRR27336802/SRR27336802.fastq.gz 5810e74da314eabe751ecec2030edd0c 202442256 -Austin2024 2024 10.1038/s41598-024-64818-7 ARP 34 S SRA PRJNA1056444 SRS19976911 ARP34S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 1000 SINGLE WGS 9941233 SRR27336805 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/005/SRR27336805/SRR27336805.fastq.gz 6b803041313b9c4ecc29a83ee05dd7f3 255778837 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 32 S SRA PRJNA1056444 SRS19976951 ARP32S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 10583702 SRR27336765 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/065/SRR27336765/SRR27336765.fastq.gz 86c06dfd31dbd1412937951105978220 318365820 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 1 T SRA PRJNA1056444 SRS19976950 ARP1T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 7075877 SRR27336766 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/066/SRR27336766/SRR27336766.fastq.gz 97b9e10c21fbfbea592b9a4b22f00d13 185529395 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 3 T SRA PRJNA1056444 SRS19976946 ARP3T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 9576143 SRR27336770 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/070/SRR27336770/SRR27336770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/070/SRR27336770/SRR27336770_2.fastq.gz 326db8fdd6b40b9ad021bbd23ba2e6a2;5871c1a7c0bc58f61339ff1acaaafd48 288936031;290833524 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 4 T SRA PRJNA1056444 SRS19976945 ARP4T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 9104658 SRR27336771 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/071/SRR27336771/SRR27336771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/071/SRR27336771/SRR27336771_2.fastq.gz 3db2a3db9e74d314bfff3624d4258a43;26add8ca30f1bb1b5e272d02a6d391ea 263953252;266305253 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 36 S SRA PRJNA1056444 SRS19976944 ARP36S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 10133387 SRR27336772 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/072/SRR27336772/SRR27336772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/072/SRR27336772/SRR27336772_2.fastq.gz 00f6214e52ea308552b531f6b98e9dab;2c8e65014a2c29c1af916788f329590a 282412174;283669657 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 37 S SRA PRJNA1056444 SRS19976943 ARP37S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 8053548 SRR27336773 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/073/SRR27336773/SRR27336773.fastq.gz 2bc9540a7876b2cde37de134a43fd1ab 224079948 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 38 S SRA PRJNA1056444 SRS19976941 ARP38S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 6981629 SRR27336775 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/075/SRR27336775/SRR27336775.fastq.gz 86a0eb29d15d480f1d21d6f0d971fe0b 203661003 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 23 S SRA PRJNA1056444 SRS19976936 ARP23S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 7611865 SRR27336780 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/080/SRR27336780/SRR27336780.fastq.gz c9b2257bd057a3b01ff86da451667486 205937297 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 7 T SRA PRJNA1056444 SRS19976933 ARP7T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 8684182 SRR27336783 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/083/SRR27336783/SRR27336783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/083/SRR27336783/SRR27336783_2.fastq.gz bdccf8fd7f3fb185704c5a662d67fabd;5a47a6b474b63fb1b6c9da8dfbfe107a 241815809;244071739 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 25 S SRA PRJNA1056444 SRS19976931 ARP25S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 6273958 SRR27336785 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/085/SRR27336785/SRR27336785.fastq.gz 8da80aa0fa472062b69ae625dc1cce90 160665516 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 11 T SRA PRJNA1056444 SRS19976930 ARP11T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 72211981 SRR27336786 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/086/SRR27336786/SRR27336786_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/086/SRR27336786/SRR27336786_2.fastq.gz ea1809fe3a24f0f74adf662851d4f8a2;06e6988b6d49ea025e711fa9ba03db9e 2893932572;2897656027 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 10 T SRA PRJNA1056444 SRS19976925 ARP10T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 9554303 SRR27336791 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/091/SRR27336791/SRR27336791.fastq.gz f84854ad4c74b80c963460f7caebe1e4 295056642 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 14 T SRA PRJNA1056444 SRS19976924 ARP14T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 10419069 SRR27336792 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/092/SRR27336792/SRR27336792.fastq.gz 180d4ad87c855013366f1eea285c519c 315536714 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 15 T SRA PRJNA1056444 SRS19976923 ARP15T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 10372324 SRR27336793 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/093/SRR27336793/SRR27336793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/093/SRR27336793/SRR27336793_2.fastq.gz af2cae2e025fe7f4283519847f4ed592;a3d0d5d6e54a6cada74b5c4a7848f15d 318422552;320693152 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 27 S SRA PRJNA1056444 SRS19976921 ARP27S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 7641407 SRR27336795 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/095/SRR27336795/SRR27336795.fastq.gz 870b420189b9080492568a9702ea91dd 190215393 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 33 S SRA PRJNA1056444 SRS19976917 ARP33S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 8021874 SRR27336799 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/099/SRR27336799/SRR27336799.fastq.gz 0e5051e39f7cc54918d191b7cf1142c6 213857106 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 18 T SRA PRJNA1056444 SRS19976916 ARP18T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 10186325 SRR27336800 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR27336800/SRR27336800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR27336800/SRR27336800_2.fastq.gz 453a68f17e3c9720e72800ecdd8cce98;30395af6cc1dbd4576bbea5a4abbf5d2 290755947;292840607 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 20 T SRA PRJNA1056444 SRS19976909 ARP20T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 9667924 SRR27336807 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/007/SRR27336807/SRR27336807.fastq.gz 8e59cd6406b0ee62211464e22329415c 277056845 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 35 S SRA PRJNA1056444 SRS19976949 ARP35S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 9383222 SRR27336767 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/067/SRR27336767/SRR27336767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/067/SRR27336767/SRR27336767_2.fastq.gz 39338257809d5991cd763047f8515a47;75adb63e27a8147ca9087b6262f5e532 258594123;260623611 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 5 T SRA PRJNA1056444 SRS19976939 ARP5T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 91903089 SRR27336777 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/077/SRR27336777/SRR27336777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/077/SRR27336777/SRR27336777_2.fastq.gz 540c37af3b13e41ac5cb4066f7c44ce1;f851cf7468fd6df21778c5f7c0da83fb 3470218229;3349904922 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 26 S SRA PRJNA1056444 SRS19976929 ARP26S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 8981889 SRR27336787 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/087/SRR27336787/SRR27336787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/087/SRR27336787/SRR27336787_2.fastq.gz 98f7e03fb719986d765d04a619967ff2;a276019c4bdda1666f8a6ef7b818e4c5 246416941;248804630 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 12 T SRA PRJNA1056444 SRS19976927 ARP12T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 8555439 SRR27336789 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/089/SRR27336789/SRR27336789.fastq.gz 6267d838e47b98d1f73d0c6208e5bf30 225597224 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 16 T SRA PRJNA1056444 SRS19976922 ARP16T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 10531650 SRR27336794 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/094/SRR27336794/SRR27336794.fastq.gz 17bc773fede21903793fe4aa68ddfbfa 278502450 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 17 T SRA PRJNA1056444 SRS19976920 ARP17T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 8565580 SRR27336796 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/096/SRR27336796/SRR27336796.fastq.gz 1681cef3418c4f2d0db23066b9b81065 223727317 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 30 S SRA PRJNA1056444 SRS19976913 ARP30S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 84657481 SRR27336803 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/003/SRR27336803/SRR27336803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/003/SRR27336803/SRR27336803_2.fastq.gz b9b539963408a9f69ab81647b3eda0cd;f0fe648bb898843ebc24667b87c3538c 3226019328;3139472170 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 28 S SRA PRJNA1056444 SRS19976912 ARP28S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 12022723 SRR27336804 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/004/SRR27336804/SRR27336804.fastq.gz 02239626ccb229466112e938c89d69c9 367363663 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 19 T SRA PRJNA1056444 SRS19976910 ARP19T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 10756095 SRR27336806 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/006/SRR27336806/SRR27336806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/006/SRR27336806/SRR27336806_2.fastq.gz f85e92692a446fea2cb7964ff0304dbb;8f2eadc1e01e53af8b88056416537d11 339397625;341715031 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 2 T SRA PRJNA1056444 SRS19976947 ARP2T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 8667136 SRR27336769 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/069/SRR27336769/SRR27336769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/069/SRR27336769/SRR27336769_2.fastq.gz 9bba995fd448739b035212fc8fe68249;5a271aab1da83f01eec42b60f613885e 241204366;242611835 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 29 S SRA PRJNA1056444 SRS19976942 ARP29S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 6609417 SRR27336774 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/074/SRR27336774/SRR27336774.fastq.gz e3195d19e13cd3bfbb31e7544ea0de72 174579176 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 39 S SRA PRJNA1056444 SRS19976940 ARP39S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 8256172 SRR27336776 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/076/SRR27336776/SRR27336776.fastq.gz 27c6ef2768e932e832de6fe53de6832e 192691555 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 22 S SRA PRJNA1056444 SRS19976938 ARP22S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 6669513 SRR27336778 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/078/SRR27336778/SRR27336778.fastq.gz 6d4c67036bd21e74008e9a497c1d1ed5 169642431 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 24 S SRA PRJNA1056444 SRS19976935 ARP24S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 6643224 SRR27336781 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/081/SRR27336781/SRR27336781.fastq.gz e0f210923464c9398d90e1e9d18ad31d 169289697 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 6 T SRA PRJNA1056444 SRS19976934 ARP6T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 8364558 SRR27336782 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/082/SRR27336782/SRR27336782.fastq.gz b1b10867393cadd19b6c8ac960d5f29a 220240645 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 8 T SRA PRJNA1056444 SRS19976932 ARP8T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 9220925 SRR27336784 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/084/SRR27336784/SRR27336784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/084/SRR27336784/SRR27336784_2.fastq.gz 96bd5a3fea22fcbbe057471997989a6d;4d1fed2b818a945fdadc6f5ea39c0ba0 275741358;277662373 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 9 T SRA PRJNA1056444 SRS19976928 ARP9T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 10355611 SRR27336788 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/088/SRR27336788/SRR27336788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/088/SRR27336788/SRR27336788_2.fastq.gz 06d08f40189e312701b9a0a804e171e9;a3c7c0a57259dd2701a40e43e87e0800 281990349;285146396 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 21 S SRA PRJNA1056444 SRS19976919 ARP21S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 9230033 SRR27336797 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/097/SRR27336797/SRR27336797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/097/SRR27336797/SRR27336797_2.fastq.gz 1d690bde3779209972ecf76372a2756b;9c26a02303066236b6cae3e13451b20a 282404086;284232595 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 31 S SRA PRJNA1056444 SRS19976918 ARP31S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 96719984 SRR27336798 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_2.fastq.gz b88b1d8e4afd3b15ed74b491e1036e4b;6ae95f827831eeb1ce02e91a0e31babc 3651086684;3545748908 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 13 T SRA PRJNA1056444 SRS19976914 ARP13T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 7421314 SRR27336802 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/002/SRR27336802/SRR27336802.fastq.gz 5810e74da314eabe751ecec2030edd0c 202442256 +Austin2024 2024 10.1038/s41598-024-64818-7 ARP 34 S SRA PRJNA1056444 SRS19976911 ARP34S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 9941233 SRR27336805 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/005/SRR27336805/SRR27336805.fastq.gz 6b803041313b9c4ecc29a83ee05dd7f3 255778837