diff --git a/CHANGELOG.md b/CHANGELOG.md
index e378dd1ac..66ae3ae60 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -11,7 +11,8 @@ and this project follows to [Calendar Versioning](https://calver.org/).
#### Ancient Metagenome: Host Associated
-- Austin 2024 10.1038/s41598-024-64818-7 (added by @alexhbnr)
+- Austin 2024 10.1038/s41598-024-64818-7 (added by @alexhbnr and @jfy133)
+- Bozzi 2024 10.1038/s41598-023-40246-x (added by @DavideBozzi and @alexhbn)
#### Ancient Single Genome: Host Associated
diff --git a/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv b/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv
index e68b0c279..a113bb9c6 100644
--- a/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv
+++ b/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv
@@ -2599,3 +2599,73 @@ Austin2024 2024 10.1038/s41598-024-64818-7 ARP 21 S SRA PRJNA1056444 SRS19976919
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 31 S SRA PRJNA1056444 SRS19976918 ARP31S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 96719984 SRR27336798 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_2.fastq.gz b88b1d8e4afd3b15ed74b491e1036e4b;6ae95f827831eeb1ce02e91a0e31babc 3651086684;3545748908
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 13 T SRA PRJNA1056444 SRS19976914 ARP13T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 7421314 SRR27336802 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/002/SRR27336802/SRR27336802.fastq.gz 5810e74da314eabe751ecec2030edd0c 202442256
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 34 S SRA PRJNA1056444 SRS19976911 ARP34S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 9941233 SRR27336805 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/005/SRR27336805/SRR27336805.fastq.gz 6b803041313b9c4ecc29a83ee05dd7f3 255778837
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diff --git a/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv b/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv
index 72c69176e..d63b8bbcb 100644
--- a/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv
+++ b/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv
@@ -863,10 +863,10 @@ FellowsYates2021 2021 10.1073/pnas.2021655118 El Collado 38.919 -0.121 Spain ECO
FellowsYates2021 2021 10.1073/pnas.2021655118 El Collado 38.919 -0.121 Spain ECO010.B Homo sapiens 9000 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774463
FellowsYates2021 2021 10.1073/pnas.2021655118 El Mirón 38.919 -0.121 Spain EMN001.A Homo sapiens 9000 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774464
FellowsYates2021 2021 10.1073/pnas.2021655118 Mota 7.29 37.47 Ethiopia MOA001.A Homo sapiens 4500 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774465
-FellowsYates2021 2021 10.1073/pnas.2021655118 Dolní Věstonice II 48.883 16.65 Czech Republic DLV001.A Homo sapiens 31000 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774466
-FellowsYates2021 2021 10.1073/pnas.2021655118 Dolní Věstonice II 48.883 16.650086 Czech Republic DLV002.A Homo sapiens 31000 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774467
+FellowsYates2021 2021 10.1073/pnas.2021655118 Dolní Věstonice II 48.883 16.65 Czechia DLV001.A Homo sapiens 31000 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774466
+FellowsYates2021 2021 10.1073/pnas.2021655118 Dolní Věstonice II 48.883 16.650086 Czechia DLV002.A Homo sapiens 31000 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774467
FellowsYates2021 2021 10.1073/pnas.2021655118 Größe Ofnethöhle 48.818 10.45 Germany OFN001.A Homo sapiens 9200 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774468
-FellowsYates2021 2021 10.1073/pnas.2021655118 Pavlov I 48.873 16.672 Czech Republic PLV001.A Homo sapiens 29500 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774469
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FellowsYates2021 2021 10.1073/pnas.2021655118 Grotte de Rigney 47.383 6.166 France RIG001.A Homo sapiens 15400 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774470
FellowsYates2021 2021 10.1073/pnas.2021655118 Essaouira (Mogador) 31.51 -9.76 Morocco ESA003.A Homo sapiens 300 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774471
FellowsYates2021 2021 10.1073/pnas.2021655118 Essaouira (Mogador) 31.51 -9.76 Morocco ESA004.A Homo sapiens 300 10.1073/pnas.2021655118 oral dental calculus ENA PRJEB34569 ERS3774472
@@ -1469,3 +1469,73 @@ Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 U
Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 27 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976921
Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 28 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976912
Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 29 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976942
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+Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V11_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485720
+Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V3_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485725
+Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V5_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485730
+Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V9_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485737
diff --git a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv
index bdadf8bb5..f34db1b16 100644
--- a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv
+++ b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv
@@ -6,7 +6,7 @@ Schuenemann2013 2013 10.1126/science.1238286 St. Mary Magdalene leprosarium, Win
Schuenemann2013 2013 10.1126/science.1238286 St. Mary Magdalene leprosarium, Winchester 51.059 -1.308 United Kingdom SK8 Homo sapiens 1000 10.1126/science.1238286 bacteria Mycobacterium leprae tooth chromosome SRA raw PRJNA200950 SRS418845
Schuenemann2018 2018 10.1371/journal.ppat.1006997 Szentes-Kistőke 46.715 20.281 Hungary SK11 Homo sapiens 1300 10.1016/j.meegid.2015.02.001 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667046
Schuenemann2018 2018 10.1371/journal.ppat.1006997 Necropoli Vicenne Campochiaro 41.564 14.498 Italy T18 Homo sapiens 1300 10.1016/j.meegid.2015.02.001 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667044
-Schuenemann2018 2018 10.1371/journal.ppat.1006997 Prušánky 48.831 16.982 Czech Republic Body 188 Homo sapiens 1100 10.1016/j.meegid.2015.02.001 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667047
+Schuenemann2018 2018 10.1371/journal.ppat.1006997 Prušánky 48.831 16.982 Czechia Body 188 Homo sapiens 1100 10.1016/j.meegid.2015.02.001 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667047
Schuenemann2018 2018 10.1371/journal.ppat.1006997 Great Chesterford 52.063 0.193 United Kingdom GC96 Homo sapiens 1500 10.1371/journal.pone.0124282 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA417381 SRS2667045
Warinner2014 2014 10.1038/ng.2906 Dalheim 51.565 8.84 Germany G12 Homo sapiens 900 10.1038/ng.2906 bacteria Tannerella forsythia tooth chromosome SRA raw PRJNA216965 SRS473747,SRS473746,SRS473748,SRS473749,SRS473750
Bos2014 2014 10.1038/nature13591 El Yaral -17.41 -71.092 Peru 64 Homo sapiens 900 10.1038/nature13591 bacteria Mycobacterium pinnipedii bone chromosome SRA raw PRJNA244165 SRS592075
@@ -47,8 +47,8 @@ Muhlemann2018 2018 10.1038/s41586-018-0097-z Keden 41.428 75.329 Kyrgyzstan DA51
Muhlemann2018 2018 10.1038/s41586-018-0097-z Bulanovo 52.453 55.16 Russia RISE386 Homo sapiens 3800 10.1038/s41586-018-0097-z virus Hepatitis B virus tooth chromosome GenBank consensus,assembly PRJEB25584 LT992448
Muhlemann2018 2018 10.1038/s41586-018-0097-z Butakty 43.202 76.981 Kazakhstan DA222 Homo sapiens 1100 10.1038/s41586-018-0097-z virus Hepatitis B virus unknown chromosome GenBank consensus,assembly PRJEB25584 LT992454
Dux2020 2020 10.1126/science.aba9411 Berlin 52.51 13.4 Germany BMM 655/1912 Homo sapiens 100 10.1126/science.aba9411 virus Measles morbillivirus lung tissue chromosome ENA raw PRJEB36265 ERS4249335
-Dux2020 2020 10.1126/science.aba9411 Prague 50.06 14.46 Czech Republic MVi/Prague.CZE/60/1 Homo sapiens 100 10.1126/science.aba9411 virus Measles morbillivirus isolate chromosome ENA raw PRJEB36265 ERS4249362
-Dux2020 2020 10.1126/science.aba9411 Prague 50.06 14.46 Czech Republic Mvi/Prague.CZE/60/2 Homo sapiens 100 10.1126/science.aba9411 virus Measles morbillivirus isolate chromosome ENA raw PRJEB36265 ERS4249363
+Dux2020 2020 10.1126/science.aba9411 Prague 50.06 14.46 Czechia MVi/Prague.CZE/60/1 Homo sapiens 100 10.1126/science.aba9411 virus Measles morbillivirus isolate chromosome ENA raw PRJEB36265 ERS4249362
+Dux2020 2020 10.1126/science.aba9411 Prague 50.06 14.46 Czechia Mvi/Prague.CZE/60/2 Homo sapiens 100 10.1126/science.aba9411 virus Measles morbillivirus isolate chromosome ENA raw PRJEB36265 ERS4249363
Maixner2016 2016 10.1126/science.aad2545 Hauslabjoch 46.773 10.837 Italy Iceman Stomach/Intestine (1054/1051/1063/1036) Homo sapiens 5300 10.1126/science.aad2545 bacteria Helicobacter pylori digestive tract contents chromosome ENA raw PRJEB11511 ERS942275,ERS942266,ERS942283,ERS942284,ERS942285,ERS942286,ERS942287,ERS942288,ERS942289,ERS942290,ERS942291,ERS942292,ERS942293,ERS942294,ERS942267,ERS942277,ERS942270,ERS942274,ERS942269,ERS942268,ERS942271,ERS942265,ERS942273,ERS942272,ERS942281,ERS942282
Guellil2018 2018 10.1073/pnas.1807266115 St Nicolay’s ALT St Clement's Church, Oslo 59.904 10.765 Norway OSL9a Homo sapiens 400 10.1073/pnas.1807266115 bacteria Borrelia recurrentis tooth chromosome ENA raw PRJEB24501 ERS2591211
Guellil2018 2018 10.1073/pnas.1807266115 St Nicolay’s ALT St Clement's Church, Oslo 59.904 10.765 Norway OSL9b Homo sapiens 400 10.1073/pnas.1807266116 bacteria Borrelia recurrentis tooth chromosome ENA raw PRJEB24501 ERS2591210
@@ -108,7 +108,7 @@ Keller2019 2019 10.1073/pnas.1820447116 Waging 47.934 12.733 Germany WAG001.A Ho
Muhlemann2018b 2018 10.1073/pnas.1804921115 Tian Shan 41.501 75.794 Kyrgyzstan DA66 Homo sapiens 1500 10.1073/pnas.1804921115 virus Parvovirus B19 unknown chromosome GitHub reference_aligned,consensus acorg/parvo-2018 DA66
Muhlemann2018b 2018 10.1073/pnas.1804921115 Lake Baikal (Shamanka II) 51.698 103.703 Russia DA337 Homo sapiens 4000 10.1073/pnas.1804921115 virus Parvovirus B19 unknown chromosome GitHub reference_aligned,consensus acorg/parvo-2018 DA337
Muhlemann2018b 2018 10.1073/pnas.1804921115 Gotland 57.63 18.28 Sweden VK477 Homo sapiens 1000 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 VK477
-Muhlemann2018b 2018 10.1073/pnas.1804921115 Brandýsek 50.18 14.15 Czech Republic RISE569 Homo sapiens 1300 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 RISE569
+Muhlemann2018b 2018 10.1073/pnas.1804921115 Brandýsek 50.18 14.15 Czechia RISE569 Homo sapiens 1300 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 RISE569
Muhlemann2018b 2018 10.1073/pnas.1804921115 Bazaiha, Krasnoyarsk 55.951 92.784 Russia NEO105 Homo sapiens 500 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 NEO105
Muhlemann2018b 2018 10.1073/pnas.1804921115 Lake Baikal (Shamanka II) 51.698 103.703 Russia DA251 Homo sapiens 6900 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 DA251
Muhlemann2018b 2018 10.1073/pnas.1804921115 Eastern Settlement 60.99 -45.42 Greenland VK6 Homo sapiens 1000 10.1073/pnas.1804921115 virus Parvovirus B19 tooth chromosome GitHub reference_aligned,consensus acorg/parvo-2018 VK6
@@ -366,7 +366,7 @@ Kocher2021 2021 10.1126/science.abi5658 Kaps 40.867 43.717 Armenia ARM001 Homo s
Kocher2021 2021 10.1126/science.abi5658 Kaps 40.867 43.717 Armenia ARM0023 Homo sapiens 5200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597753
Kocher2021 2021 10.1126/science.abi5658 Arslantepe 38.382 38.361 Turkey ART005 Homo sapiens 5700 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597754
Kocher2021 2021 10.1126/science.abi5658 Arslantepe 38.382 38.361 Turkey ART024 Homo sapiens 5400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597755
-Kocher2021 2021 10.1126/science.abi5658 Brandýs nad Labem 50.187 14.664 Czech Republic BNL005 Homo sapiens 4100 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597756
+Kocher2021 2021 10.1126/science.abi5658 Brandýs nad Labem 50.187 14.664 Czechia BNL005 Homo sapiens 4100 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597756
Kocher2021 2021 10.1126/science.abi5658 Boncuklu Hoyuk 37.752 32.865 Turkey BON020 Homo sapiens 10100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597757
Kocher2021 2021 10.1126/science.abi5658 Bolshoy Oleni Ostrov 69.224 33.485 Russia BOO006 Homo sapiens 3500 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597758
Kocher2021 2021 10.1126/science.abi5658 Bolshoy Oleni Ostrov 69.224 33.485 Russia BOO008 Homo sapiens 3500 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597759
@@ -388,7 +388,7 @@ Kocher2021 2021 10.1126/science.abi5658 Gurgy Les Noisats 47.864 3.56 France GRG
Kocher2021 2021 10.1126/science.abi5658 Gurgy Les Noisats 47.864 3.56 France GRG036 Homo sapiens 6800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597775
Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany HAL05 Homo sapiens 7100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597776
Kocher2021 2021 10.1126/science.abi5658 Halberstadt 51.896 11.047 Germany HAL15 Homo sapiens 7000 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597777
-Kocher2021 2021 10.1126/science.abi5658 Hostivice-Palouky 50.08 14.281 Czech Republic HOP004 Homo sapiens 4300 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597778
+Kocher2021 2021 10.1126/science.abi5658 Hostivice-Palouky 50.08 14.281 Czechia HOP004 Homo sapiens 4300 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597778
Kocher2021 2021 10.1126/science.abi5658 Ölsund, Hälsingland 61.632 16.36 Sweden HSL001 Homo sapiens 4400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597779
Kocher2021 2021 10.1126/science.abi5658 Vegachayoq Moqo, Huari -13.06 -74.2 Peru HUA056 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597780
Kocher2021 2021 10.1126/science.abi5658 Vegachayoq Moqo, Huari -13.06 -74.2 Peru HUA063 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597781
@@ -439,14 +439,14 @@ Kocher2021 2021 10.1126/science.abi5658 Leubingen 51.206 11.183 Germany LEU065 H
Kocher2021 2021 10.1126/science.abi5658 Loschbour rock shelter 49.77 6.24 Luxembourg Loschbour Homo sapiens 8100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597826
Kocher2021 2021 10.1126/science.abi5658 Machu Picchu -13.163 -72.546 Peru MAP007 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597827
Kocher2021 2021 10.1126/science.abi5658 Mayachnyiy bugor 47.095 47.211 Russia MAY017 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597828
-Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIB003 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597829
-Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIB011 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597830
-Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIB040 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597831
-Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIB041 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597832
-Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MIS002 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597833
+Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czechia MIB003 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597829
+Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czechia MIB011 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597830
+Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czechia MIB040 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597831
+Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czechia MIB041 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597832
+Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czechia MIS002 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597833
Kocher2021 2021 10.1126/science.abi5658 Maryinskaya 5 43.905 43.522 Russia MK5004 Homo sapiens 5200 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597834
Kocher2021 2021 10.1126/science.abi5658 Maryinskaya 5 43.905 43.522 Russia MK5009 Homo sapiens 4800 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597835
-Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czech Republic MKL025 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597836
+Kocher2021 2021 10.1126/science.abi5658 Mikulovice 49.992 15.777 Czechia MKL025 Homo sapiens 3800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597836
Kocher2021 2021 10.1126/science.abi5658 Malaya Ryazan' 53.224 49.315 Russia MLR005 Homo sapiens 700 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597837
Kocher2021 2021 10.1126/science.abi5658 Minino II 59.382 39.396 Russia MN2003 Homo sapiens 10600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597838
Kocher2021 2021 10.1126/science.abi5658 Kanaljorden, Motala 58.548 14.972 Sweden MOT001 Homo sapiens 7800 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597839
@@ -456,8 +456,8 @@ Kocher2021 2021 10.1126/science.abi5658 Nevinnomyskiy 3 44.735 41.939 Russia NV3
Kocher2021 2021 10.1126/science.abi5658 Oakington 52.26 0.061 United Kingdom OAI017 Homo sapiens 1500 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597843
Kocher2021 2021 10.1126/science.abi5658 Oberottmarshausen 48.233 10.861 Germany OOH025 Homo sapiens 3600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597844
Kocher2021 2021 10.1126/science.abi5658 Orenburg 51.81 55.18 Russia ORE002 Homo sapiens 2600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597845
-Kocher2021 2021 10.1126/science.abi5658 Prague 8 - Ďáblice 50.148 14.485 Czech Republic PDA001 Homo sapiens 4100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597846
-Kocher2021 2021 10.1126/science.abi5658 Prague 8 - Ďáblice 50.148 14.485 Czech Republic PDA003 Homo sapiens 4200 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597847
+Kocher2021 2021 10.1126/science.abi5658 Prague 8 - Ďáblice 50.148 14.485 Czechia PDA001 Homo sapiens 4100 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597846
+Kocher2021 2021 10.1126/science.abi5658 Prague 8 - Ďáblice 50.148 14.485 Czechia PDA003 Homo sapiens 4200 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597847
Kocher2021 2021 10.1126/science.abi5658 Pendimoun 43.81 7.51 France PEN003 Homo sapiens 7400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597848
Kocher2021 2021 10.1126/science.abi5658 Purun Llacta de Soloco -6.3 -77.701 Peru PLS004 Homo sapiens 400 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597849
Kocher2021 2021 10.1126/science.abi5658 Peñón de la Zorra 38.645 -0.87 Spain PLZ001 Homo sapiens 3600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597850
@@ -485,8 +485,8 @@ Kocher2021 2021 10.1126/science.abi5658 Grotta dell'Uzzo 38.11 12.787 Italy UZZ0
Kocher2021 2021 10.1126/science.abi5658 Grotta dell'Uzzo 38.11 12.787 Italy UZZ081 Homo sapiens 8600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597872
Kocher2021 2021 10.1126/science.abi5658 Grotta dell'Uzzo 38.11 12.787 Italy UZZ099 Homo sapiens 6000 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597873
Kocher2021 2021 10.1126/science.abi5658 Varna 43.219 27.914 Bulgaria VAR021 Homo sapiens 6500 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597874
-Kocher2021 2021 10.1126/science.abi5658 Vliněves 50.373 14.449 Czech Republic VLI016 Homo sapiens 4400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597875
-Kocher2021 2021 10.1126/science.abi5658 Vliněves 50.373 14.449 Czech Republic VLI060 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597876
+Kocher2021 2021 10.1126/science.abi5658 Vliněves 50.373 14.449 Czechia VLI016 Homo sapiens 4400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597875
+Kocher2021 2021 10.1126/science.abi5658 Vliněves 50.373 14.449 Czechia VLI060 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597876
Kocher2021 2021 10.1126/science.abi5658 Vertaizon 45.774 3.287 France VTZ008 Homo sapiens 6400 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597877
Kocher2021 2021 10.1126/science.abi5658 Vertaizon 45.774 3.287 France VTZ011 Homo sapiens 6600 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597878
Kocher2021 2021 10.1126/science.abi5658 Wehringen-Hochfeld 48.247 10.801 Germany WEH008 Homo sapiens 3900 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597879
@@ -496,21 +496,21 @@ Kocher2021 2021 10.1126/science.abi5658 Wenigensömmern 51.174 11.136 Germany WS
Kocher2021 2021 10.1126/science.abi5658 Yunatsite 42.23 24.26 Bulgaria YUN048 Homo sapiens 6500 10.1126/science.abi5658 virus Hepatitis B virus bone chromosome ENA reference_aligned PRJEB45699 ERS6597883
Kocher2021 2021 10.1126/science.abi5658 Zweisimmen Kirchgasse 46.554 7.372 Switzerland ZWE008 Homo sapiens 600 10.1126/science.abi5658 virus Hepatitis B virus tooth chromosome ENA reference_aligned PRJEB45699 ERS6597884
AndradesValtuena2022 2022 10.1073/pnas.2116722119 Dereivka I 48.91 33.76 Ukraine I5884 Homo sapiens 4200 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777163
-AndradesValtuena2022 2022 10.1073/pnas.2116722119 Vlineves 50.373 14.449 Czech Republic VLI092 Homo sapiens 4200 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777164
+AndradesValtuena2022 2022 10.1073/pnas.2116722119 Vlineves 50.373 14.449 Czechia VLI092 Homo sapiens 4200 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777164
AndradesValtuena2022 2022 10.1073/pnas.2116722119 Krasnogvardeyskoe 45.825 41.582 Russia KNK001 Homo sapiens 4200 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777165
AndradesValtuena2022 2022 10.1073/pnas.2116722119 Großstorkwitz 51.189 12.267 Germany GRS004 Homo sapiens 4100 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777166
-AndradesValtuena2022 2022 10.1073/pnas.2116722119 Hostivice-Palouky 50.08 14.281 Czech Republic HOP001 Homo sapiens 3800 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777167
-AndradesValtuena2022 2022 10.1073/pnas.2116722119 Hostivice-Palouky 50.08 14.281 Czech Republic HOP004 Homo sapiens 3800 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777168
+AndradesValtuena2022 2022 10.1073/pnas.2116722119 Hostivice-Palouky 50.08 14.281 Czechia HOP001 Homo sapiens 3800 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777167
+AndradesValtuena2022 2022 10.1073/pnas.2116722119 Hostivice-Palouky 50.08 14.281 Czechia HOP004 Homo sapiens 3800 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777168
AndradesValtuena2022 2022 10.1073/pnas.2116722119 Kaluzhnyy 1 44.848 42.219 Russia KLZ001 Homo sapiens 3800 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777169
AndradesValtuena2022 2022 10.1073/pnas.2116722119 Chociwel 50.796 17.094 Poland CHC004 Homo sapiens 3600 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777170
AndradesValtuena2022 2022 10.1073/pnas.2116722119 Kleinaitingen 48.218 10.846 Germany KLE031 Homo sapiens 3500 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777171
-AndradesValtuena2022 2022 10.1073/pnas.2116722119 Mikulovice 49.992 15.777 Czech Republic MIB054 Homo sapiens 3600 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777172,ERS10777173,ERS10777174
+AndradesValtuena2022 2022 10.1073/pnas.2116722119 Mikulovice 49.992 15.777 Czechia MIB054 Homo sapiens 3600 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777172,ERS10777173,ERS10777174
AndradesValtuena2022 2022 10.1073/pnas.2116722119 Kleinaitingen 48.218 10.846 Germany KLE048 Homo sapiens 3400 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777175
AndradesValtuena2022 2022 10.1073/pnas.2116722119 Oberottmarshausen 48.233 10.861 Germany OOH003 Homo sapiens 3300 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777176
AndradesValtuena2022 2022 10.1073/pnas.2116722119 Dolmen “El Sotillo” 42.573 -2.621 Spain I2470 Homo sapiens 3100 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777177
AndradesValtuena2022 2022 10.1073/pnas.2116722119 Arbulag sum, Khövsgöl 49.65 99.72 Mongolia ARS007 Homo sapiens 3000 10.1073/pnas.1813608115 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777178
AndradesValtuena2022 2022 10.1073/pnas.2116722119 Kyzyl 48.278 75.356 Kazakhstan KZL002 Homo sapiens 2500 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777179
-AndradesValtuena2022 2022 10.1073/pnas.2116722119 Velešovice 49.178 16.848 Czech Republic VEL003 Homo sapiens 4000 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777180
+AndradesValtuena2022 2022 10.1073/pnas.2116722119 Velešovice 49.178 16.848 Czechia VEL003 Homo sapiens 4000 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777180
AndradesValtuena2022 2022 10.1073/pnas.2116722119 Grushevskoe 45.063 41.54 Russia GRH001 Homo sapiens 2700 10.1073/pnas.2116722119 bacteria Yersinia pestis tooth chromosome ENA raw PRJEB51099 ERS10777181
Granehall2021 2021 10.1186/s40168-021-01132-8 Isarco valley, Bressanone Elvas necropoli 17/Brixen Elvas 46.73 11.67 Italy 2102 Homo sapiens 1300 10.1016/j.quaint.2013.07.052 archaea Methanobrevibacter oralis dental calculus chromosome ENA raw PRJEB43389 ERS6205401
Pfrengle2021 2021 10.1186/s12915-021-01120-2 Studzenka 53.585 30.029 Belarus BEL024 Homo sapiens 800 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA721828 SRS9825982
diff --git a/assets/documentation/libraries/README.md b/assets/documentation/libraries/README.md
index c490fd417..a00d94511 100644
--- a/assets/documentation/libraries/README.md
+++ b/assets/documentation/libraries/README.md
@@ -40,6 +40,10 @@ Library columns are as follows:
'second' key added.
- e.g. Muhlemann2018 (original), Muhlemann2018b (first duplicate),
Muhlemann2018c (second duplicate) etc.
+- If the authors re-used data from previously published studies that have not
+ been added to AncientMetagenomeDir, please use the project name of the current
+ study where metagenomics or microbial genomic analysis has been performed for
+ all samples.
> ⚠️ [MIxS v5](https://gensc.org/mixs/) compliant field
diff --git a/assets/documentation/samples/README.md b/assets/documentation/samples/README.md
index aa6a21e94..aac222826 100644
--- a/assets/documentation/samples/README.md
+++ b/assets/documentation/samples/README.md
@@ -39,6 +39,10 @@ Sample columns are as follows:
'second' key added.
- e.g. Muhlemann2018 (original), Muhlemann2018b (first duplicate),
Muhlemann2018c (second duplicate) etc.
+- If the authors re-used data from previously published studies that have not
+ been added to AncientMetagenomeDir, please use the project name of the current
+ study where metagenomics or microbial genomic analysis has been performed for
+ all samples.
> ⚠️ [MIxS v5](https://gensc.org/mixs/) compliant field
diff --git a/assets/enums/geo_loc_name.json b/assets/enums/geo_loc_name.json
index a83b7a622..25ed5ff43 100644
--- a/assets/enums/geo_loc_name.json
+++ b/assets/enums/geo_loc_name.json
@@ -64,7 +64,7 @@
"Cuba",
"Curacao",
"Cyprus",
- "Czech Republic",
+ "Czechia",
"Democratic Republic of the Congo",
"Denmark",
"Djibouti",
@@ -161,7 +161,7 @@
"Mayotte",
"Mediterranean Sea",
"Mexico",
- "Micronesia",
+ "Micronesia, Federated States of",
"Midway Islands",
"Moldova",
"Monaco",
@@ -210,9 +210,11 @@
"Ross Sea",
"Russia",
"Rwanda",
+ "Saint Barthelemy",
"Saint Helena",
"Saint Kitts and Nevis",
"Saint Lucia",
+ "Saint Martin",
"Saint Pierre and Miquelon",
"Saint Vincent and the Grenadines",
"Samoa",
diff --git a/assets/enums/instrument_model.json b/assets/enums/instrument_model.json
index 83240cf35..c102fbeba 100644
--- a/assets/enums/instrument_model.json
+++ b/assets/enums/instrument_model.json
@@ -27,9 +27,17 @@
"BGISEQ-500",
"Complete Genomics",
"DNBSEQ-G400",
+ "DNBSEQ-G400 FAST",
"DNBSEQ-G50",
"DNBSEQ-T7",
+ "Element AVITI",
+ "FASTASeq 300",
+ "Genapsys Sequencer",
+ "GENIUS",
+ "GenoCare 1600",
+ "GenoLab M",
"GridION",
+ "GS111",
"Helicos HeliScope",
"HiSeq X Five",
"HiSeq X Ten",
@@ -47,6 +55,7 @@
"Illumina MiSeq",
"Illumina MiniSeq",
"Illumina NovaSeq 6000",
+ "Illumina NovaSeq X",
"Illumina iSeq 100",
"Ion GeneStudio S5",
"Ion GeneStudio S5 Plus",
@@ -62,11 +71,17 @@
"NextSeq 2000",
"NextSeq 500",
"NextSeq 550",
+ "Onso",
"PacBio RS",
"PacBio RS II",
"PromethION",
+ "Revio",
+ "Sentosa QS301",
"Sequel",
"Sequel II",
+ "Sequel IIe",
+ "Tapestri",
+ "UG 100",
"unspecified"
]
-}
\ No newline at end of file
+}
diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.png b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.png
index c79c73c87..dfee6ab73 100644
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diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.svg b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.svg
index 6731d27e3..d64fa694d 100644
--- a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.svg
+++ b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries.svg
@@ -36,16 +36,16 @@
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
@@ -57,26 +57,26 @@
-
-
-
-
-
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-
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+
+
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+
+
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+
+
+
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+
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+
+
+
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+
+
+
@@ -97,16 +97,16 @@
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
@@ -165,34 +165,40 @@
2023
0
-500
-1 000
-1 500
+500
+1 000
+1 500
+2 000
-
-
-
+
+
+
+
0
-500
-1 000
-1 500
+500
+1 000
+1 500
+2 000
-
-
-
+
+
+
+
0
-500
-1 000
-1 500
+500
+1 000
+1 500
+2 000
-
-
-
+
+
+
+
Publication year
Number of libraries (cumulative sum)
-Updated: 2024-04-08
+Updated: 2024-10-03
Published libraries per year
License:
CC-BY 4.0.
diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.png b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.png
index 4de3caadb..724e94bb8 100644
Binary files a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.png and b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.png differ
diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.svg b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.svg
index 71217763d..ca9d72d89 100644
--- a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.svg
+++ b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_InstrumentModel.svg
@@ -27,24 +27,24 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
@@ -59,27 +59,27 @@
-
+
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
-
-
+
+
-
-
-
-
-
+
+
+
+
+
@@ -91,28 +91,28 @@
-
+
-
-
+
+
-
-
+
+
-
+
-
+
-
-
+
+
-
+
-
+
@@ -171,25 +171,31 @@
2023
0
-200
-400
+200
+400
+600
-
-
+
+
+
0
-200
-400
+200
+400
+600
-
-
+
+
+
0
-200
-400
+200
+400
+600
-
-
+
+
+
Publication year
Number of libraries (cumulative sum)
@@ -237,7 +243,7 @@
Illumina HiSeq 1500
AB 3730xL Genetic Analyzer
NextSeq 2000
-Grouping: instrument model. Updated: 2024-04-08
+Grouping: instrument model. Updated: 2024-10-03
Published libraries per year
License:
CC-BY 4.0.
diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.png b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.png
index 8f13d2d31..fb211f412 100644
Binary files a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.png and b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.png differ
diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.svg b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.svg
index 57175392d..21ff12915 100644
--- a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.svg
+++ b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryLayout.svg
@@ -45,28 +45,28 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
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+
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+
+
+
+
+
+
+
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+
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+
+
+
+
+
+
@@ -89,34 +89,34 @@
-
+
-
-
-
-
-
-
-
-
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-
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-
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-
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-
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-
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-
-
-
+
+
+
+
+
+
+
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+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
@@ -147,26 +147,26 @@
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
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-
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+
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+
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+
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+
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+
+
@@ -225,37 +225,37 @@
2023
0
-500
-1 000
-1 500
-2 000
+500
+1 000
+1 500
+2 000
-
-
-
-
+
+
+
+
0
-500
-1 000
-1 500
-2 000
+500
+1 000
+1 500
+2 000
-
-
-
-
+
+
+
+
0
-500
-1 000
-1 500
-2 000
+500
+1 000
+1 500
+2 000
-
-
-
-
+
+
+
+
Publication year
Number of libraries (cumulative sum)
@@ -263,7 +263,7 @@
PAIRED
SINGLE
-Grouping: lib. layout. Updated: 2024-04-08
+Grouping: lib. layout. Updated: 2024-10-03
Published libraries per year
License:
CC-BY 4.0.
diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.png b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.png
index df15bea67..aaa310b13 100644
Binary files a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.png and b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.png differ
diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.svg b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.svg
index ac75f8f69..4abcc3dba 100644
--- a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.svg
+++ b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_LibraryTreatment.svg
@@ -63,49 +63,49 @@
-
+
-
-
+
+
-
-
-
+
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+
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+
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+
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@@ -117,86 +117,86 @@
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+
@@ -247,46 +247,46 @@
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+
@@ -345,31 +345,37 @@
2023
0
-500
-1 000
-1 500
+500
+1 000
+1 500
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-
-
-
+
+
+
+
0
-500
-1 000
-1 500
+500
+1 000
+1 500
+2 000
-
-
-
+
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0
-500
-1 000
-1 500
+500
+1 000
+1 500
+2 000
-
-
-
+
+
+
+
Publication year
Number of libraries (cumulative sum)
@@ -381,7 +387,7 @@
none
full-udg
half-udg
-Grouping: lib. treatment. Updated: 2024-04-08
+Grouping: lib. treatment. Updated: 2024-10-03
Published libraries per year
License:
CC-BY 4.0.
diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.png b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.png
index 956596248..f495a4a29 100644
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diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.svg b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.svg
index 4758cba77..de6a9e684 100644
--- a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.svg
+++ b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Libraries_StrandType.svg
@@ -54,38 +54,38 @@
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+
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+
@@ -97,66 +97,66 @@
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+
@@ -197,36 +197,36 @@
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+
@@ -285,31 +285,37 @@
2023
0
-500
-1 000
-1 500
+500
+1 000
+1 500
+2 000
-
-
-
+
+
+
+
0
-500
-1 000
-1 500
+500
+1 000
+1 500
+2 000
-
-
-
+
+
+
+
0
-500
-1 000
-1 500
+500
+1 000
+1 500
+2 000
-
-
-
+
+
+
+
Publication year
Number of libraries (cumulative sum)
@@ -319,7 +325,7 @@
unknown
double
single
-Grouping: strand type. Updated: 2024-04-08
+Grouping: strand type. Updated: 2024-10-03
Published libraries per year
License:
CC-BY 4.0.
diff --git a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Reads.png b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Reads.png
index 9c713aa5a..be13f8217 100644
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index 2b4a27575..2daf2835c 100644
--- a/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Reads.svg
+++ b/assets/images/figures/AncientMetagenomeDir-Library_Timeline_Reads.svg
@@ -36,17 +36,17 @@
-
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@@ -65,16 +65,16 @@
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@@ -97,16 +97,16 @@
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@@ -165,34 +165,34 @@
2023
0B
-20B
-40B
-60B
+20B
+40B
+60B
-
-
-
+
+
+
0B
-20B
-40B
-60B
+20B
+40B
+60B
-
-
-
+
+
+
0B
-20B
-40B
-60B
+20B
+40B
+60B
-
-
-
+
+
+
Publication year
Number of reads (cumulative sum)
-Updated: 2024-04-08
+Updated: 2024-10-03
Published reads per year
License:
CC-BY 4.0.
diff --git a/assets/images/figures/AncientMetagenomeDir-Publication_Timeline.svg b/assets/images/figures/AncientMetagenomeDir-Publication_Timeline.svg
index c65ef084d..e51882913 100644
--- a/assets/images/figures/AncientMetagenomeDir-Publication_Timeline.svg
+++ b/assets/images/figures/AncientMetagenomeDir-Publication_Timeline.svg
@@ -36,7 +36,7 @@
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Publication year
Number of publications
-Updated: 2024-04-08
+Updated: 2024-10-03
Publications per year
License:
CC-BY 4.0.
diff --git a/assets/images/figures/AncientMetagenomeDir-Sample_AgeTimeline.svg b/assets/images/figures/AncientMetagenomeDir-Sample_AgeTimeline.svg
index b246b5a5f..13119f0cf 100644
--- a/assets/images/figures/AncientMetagenomeDir-Sample_AgeTimeline.svg
+++ b/assets/images/figures/AncientMetagenomeDir-Sample_AgeTimeline.svg
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Years before present
Samples (n)
-Updated: 2024-04-08
+Updated: 2024-10-03
Age distribution of samples
License:
CC-BY 4.0.
diff --git a/assets/images/figures/AncientMetagenomeDir-Sample_Map.svg b/assets/images/figures/AncientMetagenomeDir-Sample_Map.svg
index d5cb3477c..dad5e1d81 100644
--- a/assets/images/figures/AncientMetagenomeDir-Sample_Map.svg
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Longitude
Latitude
-Updated: 2024-04-08
+Updated: 2024-10-03
Geographic locations of samples
License:
CC-BY 4.0.
diff --git a/assets/images/figures/AncientMetagenomeDir-Sample_Timeline.svg b/assets/images/figures/AncientMetagenomeDir-Sample_Timeline.svg
index 8a4e73b47..f9dbc2e07 100644
--- a/assets/images/figures/AncientMetagenomeDir-Sample_Timeline.svg
+++ b/assets/images/figures/AncientMetagenomeDir-Sample_Timeline.svg
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2023
0
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Publication year
Number of samples (cumulative sum)
-Updated: 2024-04-08
+Updated: 2024-10-03
Published samples per year
License:
CC-BY 4.0.
diff --git a/assets/images/figures/ancientmetagenomedir.geojson b/assets/images/figures/ancientmetagenomedir.geojson
index 2f3e65acf..07f25521c 100644
--- a/assets/images/figures/ancientmetagenomedir.geojson
+++ b/assets/images/figures/ancientmetagenomedir.geojson
@@ -2,1517 +2,1517 @@
"type": "FeatureCollection",
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