diff --git a/CHANGELOG.md b/CHANGELOG.md index 71a2ec92b..93fc0d3fb 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -15,10 +15,14 @@ and this project follows to [Calendar Versioning](https://calver.org/). #### Ancient Single Genome: Host Associated +- Hodgkins 2023 10.1007/s13313-023-00936-6 (added by @DianaSpurite and @iseultj) + #### Ancient Metagenome: Environmental ### Changed +- Fix coordinate of sample SK8 in Schuenemann 2013 10.1126/science.1238286 (@DianaSpurite and @marcel-keller) + ### Removed ## v23.09: Historic Centre of Cienfuegos diff --git a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv index e5dc2b408..f308a500f 100644 --- a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv +++ b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv @@ -2865,3 +2865,127 @@ Campos2023 2023 10.1038/s41467-023-39950-z HERB_1922 SRA PRJNA883598 SRS15248965 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1946 SRA PRJNA883598 SRS15248966 HERB_1946 double Unknown none NextSeq 500 SINGLE WGS 10729826 SRR21721650 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/050/SRR21721650/SRR21721650.fastq.gz f31a22f48c35afdba9cfbd2d6f87dd73 311169565 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1963 SRA PRJNA883598 SRS15248957 HERB_1963 double PfuTurbo Cx Hotstart DNA none NextSeq 500 SINGLE WGS 4107994 SRR21721659 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/059/SRR21721659/SRR21721659.fastq.gz 718980e28d0c4dc91bd52d1efbc9f70a 139054986 Campos2023 2023 10.1038/s41467-023-39950-z HERB_1974 SRA PRJNA883598 SRS15248958 HERB_1974 double Unknown none NextSeq 500 SINGLE WGS 9256767 SRR21721658 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR217/058/SRR21721658/SRR21721658.fastq.gz e4530fe1bb2ee93f38c728edf4283d3c 199004045 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R2 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046399 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046399/DRR046399.fastq.gz 59098fe5c2d339f49a29f62bb581df0d 3031799168 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R2 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046405 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046405/DRR046405.fastq.gz 73f76a8c76f4548200740792cec3e80f 1480013579 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R1 double AmpliTaq Gold DNA none Illumina MiSeq PAIRED WGS 135268 DRR046406 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046406/DRR046406.fastq.gz 37c506c70b5f4384eac3daf49bbf1806 13168706 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_mtDNA_Capture_R2 double AmpliTaq Gold DNA none Illumina MiSeq PAIRED WGS 135268 DRR046407 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046407/DRR046407.fastq.gz b08daf33376d9b8769638c68ef9e1624 14586872 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R1 double AmpliTaq Gold DNA none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046408 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046408/DRR046408.fastq.gz 792187bcc4f5a0837c33bfa9bcd45ff7 25135887359 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R2 double AmpliTaq Gold DNA none Illumina MiSeq PAIRED WGS 77847 DRR046411 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046411/DRR046411.fastq.gz a185e6ef0736d5798b73d57eade9aefe 8570877 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R1 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046402 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046402/DRR046402.fastq.gz 251cfd9c110f0c258b92986757c5e08e 2236884763 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_001_R1 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 32567057 DRR046398 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046398/DRR046398.fastq.gz dd07acfd074d7ab3de3a737a11a02bbf 2923006982 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R1 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046400 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046400/DRR046400.fastq.gz 9baaa4283c72e838b97cec348101b1e6 2739068719 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_002_R2 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 31133080 DRR046401 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046401/DRR046401.fastq.gz 2c7dd699fe0ed1044b150de785c8ac16 2864519935 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_003_R2 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 25994286 DRR046403 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046403/DRR046403.fastq.gz 05f383ec42a1d9c5d73e15c91b867904 2312625893 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A1-Tooth SRA PRJDB4223 DRS021185 Sanganji_131421-3_A1_004_R1 double AmpliTaq Gold DNA none Illumina Genome Analyzer IIx PAIRED WGS 22029742 DRR046404 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046404/DRR046404.fastq.gz 4589fb0baa96aee3f653d2e6de17e5fd 1438715827 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_index16_R2 double AmpliTaq Gold DNA none Illumina HiSeq 2000 PAIRED WGS 356354850 DRR046409 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046409/DRR046409.fastq.gz c66e84985b2b86e506713a055303f3fc 25985687100 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji-A2-Tooth SRA PRJDB4223 DRS021186 Sanganji_131421-3_A2_mtDNA_Capture_R1 double AmpliTaq Gold DNA none Illumina MiSeq PAIRED WGS 77847 DRR046410 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/DRR046/DRR046410/DRR046410.fastq.gz 374b027632e96e155944a5ffff376fc3 7809572 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 163 ERR1937826 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/006/ERR1937826/ERR1937826.fastq.gz 4028690b02008c7d6934e4a399a3c324 8498 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 76673447 ERR1937833 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/003/ERR1937833/ERR1937833_2.fastq.gz 9f5d8938ecfab81ff4b06cf5b85ecd84;9b0a31ebf902f6749b3d2bb66fe98583 3888369913;4105585278 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 BAM double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 5422 ERR1937825 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937825/ERR1937825.fastq.gz a0b9ad0f50ea8d3e84968e1a6b48a34f 196674 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 SINGLE WGS 21 ERR1937828 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/008/ERR1937828/ERR1937828.fastq.gz 0853f9b447d7b2d3ea74c10e8e7b698a 882 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNIII-Tooth ENA PRJEB20294 ERS1647163 2_paired_fastq double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 52435610 ERR1937834 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/004/ERR1937834/ERR1937834_2.fastq.gz 8bdc8dc708983ac9334f59ff5d3bca09;9b02c90be8f45c0a9bdcb138459bdd64 2172525415;2376886625 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 BAM double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 SINGLE WGS 20404 ERR1937827 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/007/ERR1937827/ERR1937827.fastq.gz 6413c8cb99df1ce1762913cadf28329c 537498 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 2_paired_fastq double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 PAIRED WGS 44375613 ERR1937835 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR193/005/ERR1937835/ERR1937835_2.fastq.gz 227dbeb7889d5b4e2f5188c56d079576;d0d9ee382a5ad825a4431ebfad77ba9f 2421609326;2479467479 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir-Rifeh-KNII-Tooth ENA PRJEB20294 ERS1660772 unspecified double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 807 ERR1942918 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR194/008/ERR1942918/ERR1942918.fastq.gz 8c002eac0175550cd4e5fd966261b50c 26359 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 318125040 ERR2112574 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112574/ERR2112574.fastq.gz d29e8511b8c860889920240560f28963 11592228429 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 320155752 ERR2112575 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112575/ERR2112575.fastq.gz 1c3931ef9c7b3198fd89eed4c4af79aa 11523747356 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 320577112 ERR2112576 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112576/ERR2112576.fastq.gz c01e8e624b5e7e542a6a53060eda2963 11612997118 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 286756923 ERR2112577 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112577/ERR2112577.fastq.gz 1b43fd6bdd9e0f372e0370426e502ae9 10175356811 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Augsburg-Tooth ENA PRJEB19335 ERS1892067 ABI933 double PfuTurbo Cx Hotstart DNA half-udg Illumina HiSeq 4000 SINGLE WGS 165092355 ERR2112578 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112578/ERR2112578.fastq.gz a546c8d02e34ab7ba9bf9b9b70edc110 6042098938 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-004-Tooth ENA PRJEB86458 ERS1906198 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 32788454 ERR2111944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2111944/ERR2111944.fastq.gz 2268b27c14ddaa9fe8ba1994dca180b7 1476338852 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 83657790 ERR2111947 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2111947/ERR2111947.fastq.gz 28d80ed137a4f2749c8df338f1396296 4616384352 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 84678681 ERR2111948 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2111948/ERR2111948.fastq.gz 2670f6ee30cdb2e9cf25194b1d00352f 4487414231 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 41600057 ERR2111950 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/000/ERR2111950/ERR2111950.fastq.gz 7d2f61ffbc3704b514b1ad49c83cc2ea 2283826200 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42454995 ERR2111951 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2111951/ERR2111951.fastq.gz 166f95e2b9def23d98644c5c37f39841 2239935032 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 46432244 ERR2112075 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112075/ERR2112075.fastq.gz c3058a6ab2a74162e841055c2c9871e7 3315636400 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 41968696 ERR2112076 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112076/ERR2112076.fastq.gz c1f0637d92139b565497ff8eb58dc708 3024212774 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42694502 ERR2112077 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112077/ERR2112077.fastq.gz 527ea4fcb4e247423862d8d65850297f 2971810358 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 56519202 ERR2112078 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112078/ERR2112078.fastq.gz 746c40aa7f5364b424a8a010625ab555 4015798460 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 103034192 ERR2112082 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/002/ERR2112082/ERR2112082.fastq.gz b494900e3eb4faa8fc519510c3d18044 4339155003 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 48006465 ERR2112095 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2112095/ERR2112095.fastq.gz aa23291e1ffa281f02cb00424cabca88 2904018843 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 46090647 ERR2112097 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/007/ERR2112097/ERR2112097.fastq.gz a3bc3849f6ae72755564f0639badf10b 2763637774 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 34599863 ERR2111945 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/005/ERR2111945/ERR2111945.fastq.gz be2c0610c72a60232d3d2ceacfc45c15 1531332605 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 43607924 ERR2111949 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/009/ERR2111949/ERR2111949.fastq.gz c12312b0e05b7364e4ae34ff58dbed2b 2330733778 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 48025167 ERR2112074 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112074/ERR2112074.fastq.gz 56b44ec8a3f4a84f0e6e52f23a45244f 2650703816 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 51462140 ERR2112079 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/009/ERR2112079/ERR2112079.fastq.gz cb086c299d3dd88bea8b8497712d2f23 3674875735 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 52674925 ERR2112080 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/000/ERR2112080/ERR2112080.fastq.gz 444cfc9e7f1312e42f812bf1e0437f8b 3656995820 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 247085213 ERR2112083 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/003/ERR2112083/ERR2112083.fastq.gz 5e871b7f274fd4045af8ca7a99ba6fb1 12125066589 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 156625959 ERR2112084 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112084/ERR2112084.fastq.gz 1f89e2c52b4811dfcc047ed1ee608b7e 7764413478 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 95745866 ERR2112093 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/003/ERR2112093/ERR2112093.fastq.gz 7bd19b4ef5a6ac548a04fe4e67afc7cc 6033829981 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 97073096 ERR2112094 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/004/ERR2112094/ERR2112094.fastq.gz 3d7cae0f6e17f95675644668c8b58c43 5838900641 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 30451552 ERR2185281 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/001/ERR2185281/ERR2185281.fastq.gz ab6526f8ff7e7706029265c64df6ffac 1188674769 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 28674836 ERR2185284 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/004/ERR2185284/ERR2185284.fastq.gz 25cd96b8767c4435b1fa287ffa9a57d9 1206388101 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-005-Tooth ENA PRJEB86458 ERS1906199 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 86740492 ERR2111946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2111946/ERR2111946.fastq.gz 810b089d785ebd1edbad3a41226ce5ad 4637501739 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 50136895 ERR2112081 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2112081/ERR2112081.fastq.gz 154863c74e9827eb9fee2b3a630ac19e 2230636146 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 37810056 ERR2112091 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/001/ERR2112091/ERR2112091.fastq.gz 9d9ff02519fdb933fe98adbac42996b3 1904292211 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 101242754 ERR2112092 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/002/ERR2112092/ERR2112092.fastq.gz b40662014d1863d723646aecec72da1b 6139469451 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-012-Tooth ENA PRJEB86458 ERS1906203 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 44839252 ERR2112096 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/006/ERR2112096/ERR2112096.fastq.gz a0e40d36ccb46a36986b6396ccbdef39 2801279215 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-013-Tooth ENA PRJEB86458 ERS1906204 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 42367542 ERR2112098 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR211/008/ERR2112098/ERR2112098.fastq.gz 405950db4d2dd6088e452d76e574ed6b 2206630410 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 GranCanaria-008-Tooth ENA PRJEB86458 ERS1906202 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 16219915 ERR2185282 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/002/ERR2185282/ERR2185282.fastq.gz ae8291e6f7c8dc421db1c5969b9230e3 681016439 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife-011-Tooth ENA PRJEB86458 ERS1906197 unspecified double AmpliTaq Gold DNA none HiSeq X Ten SINGLE Unknown 187683798 ERR2185283 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR218/003/ERR2185283/ERR2185283.fastq.gz 96d19ed679b9b9a6c5b601fe840f571e 6382804778 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none NextSeq 500 PAIRED Targeted-Capture 861998 ERR2204611 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2204611/ERR2204611_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2204611/ERR2204611_2.fastq.gz e97363c161e90082e6eb8fa53a3b8a58;939c0a52c40cec8b8cefdb38851435ba 39871514;41647617 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none NextSeq 500 PAIRED Targeted-Capture 28118462 ERR2204612 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/002/ERR2204612/ERR2204612_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/002/ERR2204612/ERR2204612_2.fastq.gz ddfc21cae3d74b9d1c80f06f8115a71b;2b337c73947e90b37b4006bfed0e3fb5 1144496374;1271866282 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CUDG double PfuTurbo Cx Hotstart DNA full-udg NextSeq 500 PAIRED Targeted-Capture 2863375 ERR2204613 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2204613/ERR2204613_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2204613/ERR2204613_2.fastq.gz c3c2cd5a50992713d7ed50f5b91dd97b;eb94f2bba3435db0075a3b6fda474505 131797035;136207848 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CUDG double PfuTurbo Cx Hotstart DNA full-udg NextSeq 500 PAIRED Targeted-Capture 96106710 ERR2204614 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204614/ERR2204614_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204614/ERR2204614_2.fastq.gz cdcbb32ff04e32423a6d04609a70870e;f010594dfbd557e727f45ed8fd262db3 3851279631;4247569192 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tepos_35-Tooth ENA PRJEB23438 ERS2020227 35CnU double PfuTurbo Cx Hotstart DNA none Illumina HiSeq 2000 PAIRED WGS 994328 ERR2204644 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204644/ERR2204644_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2204644/ERR2204644_2.fastq.gz 73d0b651d0d03c55e2dddbe75d77dd9d;0c02751f3c5e30e5c43e352edc178964 73031399;75636413 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Cueva_de_los_Lagos-Tooth ENA PRJEB23467 ERS2059523 unspecified double Phusion Hot Start High-Fidelity DNA none HiSeq X Ten SINGLE Unknown 179251988 ERR2224078 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR222/008/ERR2224078/ERR2224078.fastq.gz 245587cc316cb175e2eed76a5907d42e 5551553388 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Cueva_de_los_Lagos-Tooth ENA PRJEB23467 ERS2059523 unspecified double Phusion Hot Start High-Fidelity DNA none HiSeq X Ten SINGLE Unknown 1164531241 ERR2225784 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR222/004/ERR2225784/ERR2225784.fastq.gz d028912fb20f3a5c731406ad82d2e363 48849563848 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Yámana-Tooth ENA PRJEB24629 ERS2160137 unspecified double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq 2000 SINGLE WGS 808299942 ERR2270785 fastq_all ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR227/ERR2270785/IPY10.All.fastq.gz 3c32116386822aa24ff2efa67e5d2e94 45202276574 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Vác-Mummy-Tissue ENA PRJEB7454 ERS563409 92-A1 double Unknown none Illumina MiSeq PAIRED WGS 20084713 ERR651004 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR651/ERR651004/ERR651004_2.fastq.gz 3f07d29738185963f380f637b9b93065;0d96c823b7998af0b2165fe46b7e542e 2984512816;3476815638 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_10 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 75660984 ERR966295 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966295/ERR966295.fastq.gz 3f43def0d896afea489f3c5fccea36c3 3930297733 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_11 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 103486178 ERR966296 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966296/ERR966296.fastq.gz b514bc662c122adb6ac42d5acf3b05f0 5330914571 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_13 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 285814147 ERR966298 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966298/ERR966298.fastq.gz dc75bf256f29ebbd70954d7bd7ab2c9a 16162263061 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_6 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 30343646 ERR966310 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966310/ERR966310.fastq.gz 6efffec6ad1d62ed52e2cc3d3c5a7f43 1416897788 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_8 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 87962797 ERR966312 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966312/ERR966312.fastq.gz 5ceca13c5c30374209d7ea44e40de87c 4175899212 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_12 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 107286297 ERR966297 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966297/ERR966297.fastq.gz ec6261bc595a0d84a6606143492f91ec 5571578708 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_15 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 40472562 ERR966300 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966300/ERR966300.fastq.gz 600dc595ac8de4fe232ca1c00c456fec 2368473624 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_17 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 86611474 ERR966302 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966302/ERR966302.fastq.gz 1d2c52049d8c8302e8d45b83c2ce7f4f 5140536631 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_2 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 58022324 ERR966305 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966305/ERR966305.fastq.gz 9350277d1aafa8c43cec850f9e38f0e1 2756025719 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_20 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 136573362 ERR966306 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966306/ERR966306.fastq.gz 98688aecf3d8b0969298d39010220e23 6672345221 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_3 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 49940208 ERR966307 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966307/ERR966307.fastq.gz ff03f2f79b3c528eb1c98af05a3fad62 2423386088 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_4 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 26872695 ERR966308 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966308/ERR966308.fastq.gz 2557624cd4bd5e82ac3e32fc8fa4ed85 1254939750 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_7 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 94822961 ERR966311 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966311/ERR966311.fastq.gz 871dbd8cd245d22c9cdabc166b9118e5 4496790226 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_1 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 49502893 ERR966294 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966294/ERR966294.fastq.gz a808f03060305f2523287cf004fa29fc 2350014565 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_14 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 23206451 ERR966299 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966299/ERR966299.fastq.gz 4139f9e28a3f01f79f1e8fc6163342ef 1361039728 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_16 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 25867706 ERR966301 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966301/ERR966301.fastq.gz 142744b3e9bb59d960fb7959e5cadd24 1522488144 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_18 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 100755898 ERR966303 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966303/ERR966303.fastq.gz 66be0bbef7e8660498b971e19236b005 5975543012 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_19 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 85601752 ERR966304 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966304/ERR966304.fastq.gz 2377b397bc7659809ba3a3b58c9abdda 5175038658 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_5 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 47945651 ERR966309 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966309/ERR966309.fastq.gz d27e80a6d72a4e6c366a4481847639df 2206834714 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chinchorro-Mummy-Bone ENA PRJEB9733 ERS793932 Chinchorro_9 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 98694708 ERR966313 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966313/ERR966313.fastq.gz 9cfcbea3b01094ef1ab7b0bd30f84c5a 4681565044 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 11472673 ERR966440 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966440/ERR966440.fastq.gz 28855b18583116ffa22e1f40fd963278 694295918 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libCAGCTA.BC28 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 50343799 ERR966426 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966426/ERR966426.fastq.gz 88d4a682975953ad845683f12590a1d3 2888163703 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pericues-BC28-Bone ENA PRJEB9733 ERS793942 libUpp.BC28 double AmpliTaq Gold DNA none Illumina HiSeq 2000 SINGLE WGS 3444716 ERR966430 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR966/ERR966430/ERR966430.fastq.gz 075f7fe98e6ec5cde875bf670cb49c47 201382661 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Marseille-Tooth ENA PRJEB12163 ERS1020860 OBS107_UDG double AccuPrime Pfx DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 14646710 ERR1193532 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1193532/ERR1193532_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1193532/ERR1193532_2.fastq.gz 884a4afc0b75b86bbb323f58b80a041c;9e5e2bca98fdf7b541b490f5955a9ad3 1149013961;1150891719 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Marseille-Tooth ENA PRJEB12163 ERS1020860 OBS107 double AccuPrime Pfx DNA full-udg Illumina HiSeq 2000 SINGLE Targeted-Capture 851096 ERR1193537 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1193537/ERR1193537.fastq.gz 864da17f8807ceecad7368caf2c92997 39236628 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Barcelona-3031-Tooth ENA PRJEB13664 ERS1124787 Barcelona3031 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 61845279 ERR1368878 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/008/ERR1368878/ERR1368878_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/008/ERR1368878/ERR1368878_2.fastq.gz 095af025dc7f11f79502974aa75e7386;4130f9ec25f3df279f8142845961aadb 4422361795;4446780768 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 SLC-France-Tooth ENA PRJEB24499 ERS2865271 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 203877595 ERR2862150 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/000/ERR2862150/ERR2862150_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/000/ERR2862150/ERR2862150_2.fastq.gz a6112d04b304b2375dae6c34033bbc16;acafcc79f3d021db8f3308d9ac935bcf 11059312752;11017819383 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 SLC-France-Tooth ENA PRJEB24499 ERS2865271 unspecified double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 221791489 ERR2862151 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/001/ERR2862151/ERR2862151_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR286/001/ERR2862151/ERR2862151_2.fastq.gz f80f8e1d0712e6c0f2a65e79acc67ba3;190cc46629e5eda6fef664d6cb80ee3d 11578595157;11538874156 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Karolva-Tooth ENA PRJEB32786 ERS3568107 unspecified single AccuPrime Pfx DNA none Illumina HiSeq 2500 SINGLE Unknown 1140330766 ERR3426230 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR342/000/ERR3426230/ERR3426230.fastq.gz a132e833c23eea070bcaacf5ec544fc4 52616619455 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Karolva-Tooth ENA PRJEB32786 ERS3568107 unspecified single AccuPrime Pfx DNA none Illumina HiSeq 2500 SINGLE Unknown 171457258 ERR3426214 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR342/004/ERR3426214/ERR3426214.fastq.gz b8738de2667671d5a178a72cadfee9c0 5737682401 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir1595-Tooth ENA PRJEB33848 ERS3635963 Abusir1595t double Herculase II Fusion DNA none Illumina HiSeq 2500 PAIRED WGS 1752726 ERR4374869 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4374869/ERR4374869_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4374869/ERR4374869_2.fastq.gz ae15532ee7d7f77e66e514c3aba99136;7a90231a56f5b797c3b57343139ff922 123648672;117691019 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir1671-Tooth ENA PRJEB33848 ERS3636004 Abusir1671t double Herculase II Fusion DNA none Illumina HiSeq 2500 PAIRED WGS 1782693 ERR4375141 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/001/ERR4375141/ERR4375141_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/001/ERR4375141/ERR4375141_2.fastq.gz 5ae99bc0ce03b22aff0d9850f1fde5d3;175c717414a955be4cf03ec799d76262 125757629;120330029 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir1607-Tooth ENA PRJEB33848 ERS3636032 Abusir1607t double Herculase II Fusion DNA none Illumina HiSeq 2500 PAIRED WGS 1586988 ERR4374914 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/004/ERR4374914/ERR4374914_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/004/ERR4374914/ERR4374914_2.fastq.gz 1d77a89866d7447f45292a4dec6658a4;55da618b78bfecc4baa4584293980eb2 110209867;107590188 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir1655-Tooth ENA PRJEB33848 ERS3635957 Abusir1655t double Herculase II Fusion DNA none Illumina HiSeq 2500 PAIRED WGS 1945335 ERR4375049 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4375049/ERR4375049_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/009/ERR4375049/ERR4375049_2.fastq.gz f22d9971ef57fe9e47700a8c7457a588;688449cd8b334879880e9020e1ec45e9 131666971;121340094 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir1668-Tooth ENA PRJEB33848 ERS3635986 Abusir1668b double Herculase II Fusion DNA none Illumina HiSeq 2500 PAIRED WGS 1541347 ERR4375136 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/006/ERR4375136/ERR4375136_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/006/ERR4375136/ERR4375136_2.fastq.gz effef5dfd1a98d96b9e3fe315f3571f1;998c0eb27a55a32b6fe0c9414bfffa84 100349234;96655523 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir1668-Tooth ENA PRJEB33848 ERS3636003 Abusir1668t double Herculase II Fusion DNA none Illumina HiSeq 2500 PAIRED WGS 1713268 ERR4375137 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/007/ERR4375137/ERR4375137_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR437/007/ERR4375137/ERR4375137_2.fastq.gz e0c16b10c7223f0f06dc877b967efade;159f44266cd022b79bcba198793b4426 118529958;117196832 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double Unknown none HiSeq X Ten PAIRED WGS 526840783 ERR3828670 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/000/ERR3828670/ERR3828670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/000/ERR3828670/ERR3828670_2.fastq.gz 8bb30abf98faae0b4e32879e73d0fddb;2c14f5f656437db800c7d440b43118ec 32454725484;34339312668 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double Unknown none HiSeq X Ten PAIRED WGS 28036224 ERR6504159 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR650/009/ERR6504159/ERR6504159.fastq.gz 17a0ca6e5e6bf71c9baf67a3469c9667 1215957980 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Dacaozi-Tooth ENA PRJEB36297 ERS4255307 DCZM17IV double Unknown none HiSeq X Ten SINGLE WGS 26132707 ERR3828725 bam_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/005/ERR3828725/ERR3828725.fastq.gz bdbd5c57583dd407cfb4fd238f65a64e 1141752081 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 191158993 ERR3841646 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/006/ERR3841646/ERR3841646.fastq.gz ad40e5810f4cade26206881f064d781a 8028301308 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Riga_Cemetery-Tooth ENA PRJEB36413 ERS4266549 H29724 double Unknown half-udg Illumina HiSeq 4000 SINGLE Unknown 7930905 ERR3841647 fastq_mapped ftp.sra.ebi.ac.uk/vol1/fastq/ERR384/007/ERR3841647/ERR3841647.fastq.gz 59264a85b271b4cc44ece2e409ed6257 329376589 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha-UC12-12-Tooth ENA PRJEB37726 ERS4421181 SC79-L1101 single Unknown half-udg HiSeq X Ten PAIRED WGS 285113997 ERR4017942 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/002/ERR4017942/ERR4017942_2.fastq.gz 818b384816f44c7b1879294fd37bd299;0d2e65636f7a46edf753df2e68dd8a5b 18195979831;21200990407 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha-UC12-24-Tooth ENA PRJEB37726 ERS4421183 SC79-L1096 single Unknown half-udg HiSeq X Ten PAIRED WGS 283637918 ERR4017944 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/004/ERR4017944/ERR4017944_2.fastq.gz 8c7a2105a5d34c1160ea68cc6c459a7f;9365adbf8f8538a7a63631f1b3e56bda 18392091676;21164798356 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha-UC8-8168-Tooth ENA PRJEB37726 ERS4421185 SC79-L1099 single Unknown half-udg HiSeq X Ten PAIRED WGS 255728754 ERR4017946 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR401/006/ERR4017946/ERR4017946_2.fastq.gz c931ada4db74d678bc82e71dad544556;e648c62aaad77dd722f482cfd6f68d0e 16428825487;18295596682 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 El_Yaral-Bone SRA PRJNA244165 SRS592075 sample_64 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 50916301 SRR1238559 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/009/SRR1238559/SRR1238559_2.fastq.gz f62e1e3dd90fb7fd0324e920f15ab8bd;b635c5da56ca1b3dd185678c9f9df508 3713855268;3742735134 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chiribaya_Alta-Bone SRA PRJNA244165 SRS591994 sample_54 double AmpliTaq Gold DNA full-udg Illumina HiSeq 2000 PAIRED Targeted-Capture 80406577 SRR1238558 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR123/008/SRR1238558/SRR1238558_2.fastq.gz 72ade0f81eed372eae9fb927a484aa44;5f1fa7e6729773322b52903151f03192 5821824690;5839496681 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED WGS 12285216 SRR1298750 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/000/SRR1298750/SRR1298750_2.fastq.gz 0a15035340b0c7035d3bb909880b7b0e;0922a0583a8f80ec1508ad759179176f 986232779;962732023 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Peru-NA42-Bone SRA PRJNA246597 SRS620295 NA42 double Platinum Taq DNA-Polymerase High Fidelity full-udg Illumina HiSeq 2500 PAIRED WGS 8330163 SRR1298752 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/002/SRR1298752/SRR1298752_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR129/002/SRR1298752/SRR1298752_2.fastq.gz 11a8d69baa09d592a540b098a730f291;f2b6407d15e52c48950109f9a0433450 682701697;664051670 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Peru-NA42-Bone SRA PRJNA246597 SRS620295 NA42 double Platinum Taq DNA-Polymerase High Fidelity full-udg Illumina HiSeq 2500 PAIRED WGS 18730377 SRR1314214 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/004/SRR1314214/SRR1314214_2.fastq.gz d251b55d54eba0b090678c137b7db1a2;3f080f16f1ad832a0a19b532e0f3461f 1571141325;1542055871 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Peru-NA40-Bone SRA PRJNA246597 SRS620293 NA40 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED WGS 22453782 SRR1314212 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR131/002/SRR1314212/SRR1314212_2.fastq.gz 2d98d878adca254a59847145e4714b3e;25bf14d82da531b60a3ca430b90877f4 1871792459;1847705551 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 5673426 SRR5169886 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/006/SRR5169886/SRR5169886_2.fastq.gz 990dd87c0889dfb683b63a81547e18ff;9920fbe01c61b92ba8b7c655dda5e6ea 371088934;370621153 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 11699427 SRR5169887 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/007/SRR5169887/SRR5169887.fastq.gz 0554a6c3520470fed11f5859dcf6ff60 654473091 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_BAM double Platinum Taq DNA-Polymerase High Fidelity none NextSeq 500 PAIRED Unknown 850652 SRR5182352 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/002/SRR5182352/SRR5182352.fastq.gz cacc950730273faf12248a8cf993d847 22154218 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_merged1 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 5047103 SRR5169885 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/005/SRR5169885/SRR5169885.fastq.gz e738d5fc9710f7d66bbd52398aef88ee 303750743 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pueblo_Bonito-Tooth SRA PRJNA353635 SRS1853899 H3661_seperated2 double Platinum Taq DNA-Polymerase High Fidelity none Illumina HiSeq 2500 PAIRED Unknown 14110398 SRR5169888 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR516/008/SRR5169888/SRR5169888_2.fastq.gz dbb0c55e9c1da142301d4bdca8dde663;d17973f6ff1784e11a00e13cb9963253 918308388;927811702 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Gniezno-Tooth SRA PRJNA354503 SRS1815300 PCA0162 single Phusion Hot Start High-Fidelity DNA none Illumina Genome Analyzer II SINGLE WGS 6594634 SRR5047069 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/009/SRR5047069/SRR5047069.fastq.gz 6df299e1a545cb4a7af8bccc6645696f 441544945 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Punta_Candelero-Tooth SRA PRJNA557308 SRS5212084 PC-119-WGE double AmpliTaq Gold DNA none Illumina HiSeq 2500 PAIRED Targeted-Capture 13553081 SRR9898505 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR989/005/SRR9898505/SRR9898505.fastq.gz 5337cb2a6102a497dda11a6381238cb6 567421190 diff --git a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv index 00c64a54e..3f63d1775 100644 --- a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv +++ b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv @@ -620,3 +620,41 @@ Campos2023 2023 10.1038/s41467-023-39950-z Yunnan 24.55 101.45 China HERB_1922 C Campos2023 2023 10.1038/s41467-023-39950-z Tlofofo 13.33 144.73 Guam HERB_1946 Citrus sp. 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248966 Campos2023 2023 10.1038/s41467-023-39950-z Sanichare 26.67 88.02 Nepal HERB_1963 Citrus medica 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248957 Campos2023 2023 10.1038/s41467-023-39950-z Mauritius -20.3 57.6 Mauritius HERB_1974 Citrus sp. 100 10.1038/s41467-023-39950-z bacteria Xanthomonas citri pv. citri leaf chromosome SRA raw PRJNA883598 SRS15248958 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A1-Tooth Homo sapiens 3000 10.1038/jhg.2016.110 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021185 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Sanganji Shell Mound 37.87 140.91 Japan Sanganji-A2-Tooth Homo sapiens 3000 10.1038/jhg.2016.110 bacteria Clostridium tetani tooth chromosome SRA raw PRJDB4223 DRS021186 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNIII-Tooth Homo sapiens 3800 10.1016/j.jasrep.2017.12.025 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1647163 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Deir Rifeh Cemetery 27.097 31.207 Egypt Deir-Rifeh-KNII-Tooth Homo sapiens 3800 10.1016/j.jasrep.2017.12.025 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB20294 ERS1660772 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Haunstetten Unterer Talweg 85 48.318 10.891 Germany Augsburg-Tooth Homo sapiens 4200 10.1016/j.cub.2017.10.025 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB19335 ERS1892067 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife 28.291 -16.629 Spain Tenerife-011-Tooth Homo sapiens 1200 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 PRJEB86458 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife 28.291 -16.629 Spain Tenerife-004-Tooth Homo sapiens 1200 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906198 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Gran Canaria 27.92 -15.547 Spain GranCanaria-005-Tooth Homo sapiens 1000 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906199 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Gran Canaria 27.92 -15.547 Spain GranCanaria-008-Tooth Homo sapiens 1000 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906202 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife 28.291 -16.629 Spain Tenerife-012-Tooth Homo sapiens 1300 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906203 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Tenerife 28.291 -16.629 Spain Tenerife-013-Tooth Homo sapiens 1300 10.1016/j.cub.2017.09.059 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB86458 ERS1906204 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Teposcolula-Yucundaa; Mixteca Alta region, Oaxaca 17.502 -97.467 Mexico Tepos_35-Tooth Homo sapiens 400 10.1038/s41559-017-0446-6 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23438 ERS2020227 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Cueva de los Lagos 41.962 -1.993 Spain Cueva_de_los_Lagos-Tooth Homo sapiens 4000 10.1073/pnas.1717762115 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB23467 ERS2059523 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Yámana 54.933 -67.616 Chile Yámana-Tooth Homo sapiens 800 10.1186/s40168-016-0221-y bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24629 ERS2160137 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Vác 47.784 19.135 Hungary Vác-Mummy-Tissue Homo sapiens 200 10.1038/ncomms7717 bacteria Clostridium tetani tissue chromosome ENA raw PRJEB7454 ERS563409 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Maderas Enco -18.478 -70.312 Chile Chinchorro-Mummy-Bone Homo sapiens 200 10.1126/science.aab3884 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793932 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Piedra Gorda 23.6 -109.6 Mexico Pericues-BC28-Bone Homo sapiens 550 10.1126/science.aab3884 bacteria Clostridium tetani bone chromosome ENA raw PRJEB9733 ERS793942 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 l’Observance in Marseille 43.296 5.369 France Marseille-Tooth Homo sapiens 200 10.7554/eLife.12994 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB12163 ERS1020860 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Saints Màrtirs Just i Pastor, Barcelona 41.387 2.168 Spain Barcelona-3031-Tooth Homo sapiens 1400 10.1016/j.chom.2016.05.012 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB13664 ERS1124787 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Saint-Laurent-de-la-Cabrerisse 43.084 2.7 France SLC-France-Tooth Homo sapiens 1300 10.1073/pnas.1812865115 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB24499 ERS2865271 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Karlova, Tartu 58.371 26.732 Estonia Karolva-Tooth Homo sapiens 4200 10.1098/rspb.2019.1528 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB32786 ERS3568107 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1655-Tooth Homo sapiens 3100 10.1038/ncomms15694 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635957 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1595-Tooth Homo sapiens 2900 10.1038/ncomms15694 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635963 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1668-Tooth Homo sapiens 2200 10.1038/ncomms15694 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3635986,ERS3636003 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1671-Tooth Homo sapiens 2100 10.1038/ncomms15694 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636004 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Abusir el-Meleq, Middle Egypt 29.9 31.2 Egypt Abusir1607-Tooth Homo sapiens 1900 10.1186/s12915-020-00839-8 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB33848 ERS3636032 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Dacaozi site, Pingan county, Qinghai province 36.5 102.108 China Dacaozi-Tooth Homo sapiens 1900 10.1371/journal.pone.0060307 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36297 ERS4255307 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Riga 56.95 24.121 Latvia Riga_Cemetery-Tooth Homo sapiens 300 10.1038/s41598-020-71530-9 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB36413 ERS4266549 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha -13.476 -76.016 Peru Chincha-UC12-12-Tooth Homo sapiens 400 10.1073/pnas.2005965117 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421181 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha -13.476 -76.016 Peru Chincha-UC12-24-Tooth Homo sapiens 400 10.1073/pnas.2005965117 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421183 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chincha -13.477 -76.025 Peru Chincha-UC8-8168-Tooth Homo sapiens 300 10.1073/pnas.2005965117 bacteria Clostridium tetani tooth chromosome ENA raw PRJEB37726 ERS4421185 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Chiribaya Alta, Cemetery 1 -17.635 -71.293 Peru Chiribaya_Alta-Bone Homo sapiens 800 10.1038/nature13591 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS591994 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 El Yaral, Cemetery 2 -17.149 -70.924 Peru El_Yaral-Bone Homo sapiens 700 10.1038/nature13591 bacteria Clostridium tetani bone chromosome SRA raw PRJNA244165 SRS592075 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Laguna de los Condores -6.848 -77.698 Peru Peru-NA40-Bone Homo sapiens 1100 10.1016/j.ajhg.2013.10.002 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620293 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Laguna de los Condores -6.848 -77.698 Peru Peru-NA42-Bone Homo sapiens 1100 10.1016/j.ajhg.2013.10.002 bacteria Clostridium tetani bone chromosome SRA raw PRJNA246597 SRS620295 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Pueblo Bonito, New Mexico 36.06 -107.961 USA Pueblo_Bonito-Tooth Homo sapiens 900 10.1371/journal.pone.0060307 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA353635 SRS1853899 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Gniezno, Wielkopolska 52.54 17.59 Poland Gniezno-Tooth Homo sapiens 1000 10.1093/gigascience/gix044 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA354503 SRS1815300 +Hodgkins2023 2023 10.1038/s41467-023-41174-0 Punta Candelero 18.091 -65.789 Puerto Rico Punta_Candelero-Tooth Homo sapiens 1100 10.1093/molbev/msz267 bacteria Clostridium tetani tooth chromosome SRA raw PRJNA557308 SRS5212084