diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 3fc91e390..81c950f76 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -8,7 +8,6 @@ updates: target-branch: master reviewers: - rkm - - tznind - jas88 - package-ecosystem: maven directory: "/src/common/com.smi.microservices.parent" @@ -18,7 +17,6 @@ updates: target-branch: master reviewers: - rkm - - tznind - jas88 - package-ecosystem: "github-actions" directory: "/" @@ -26,7 +24,6 @@ updates: interval: daily reviewers: - rkm - - tznind - jas88 - package-ecosystem: "pip" directory: "/src/common/Smi_Common_Python" @@ -34,11 +31,17 @@ updates: interval: daily allow: - dependency-type: "all" + reviewers: + - rkm + - jas88 - package-ecosystem: "pip" directory: "/src/applications/SRAnonTool" schedule: interval: daily allow: - dependency-type: "all" + reviewers: + - rkm + - jas88 diff --git a/CHANGELOG.md b/CHANGELOG.md index b886a307f..cf6d5e9f4 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,6 +11,38 @@ A raw git diff can be seen [here][unreleased]. +## [5.3.0] 2022-11-08 + +## Feature + +- [#1259](https://github.com/SMI/SmiServices/pull/1259) by rkm. Add support + for extraction processing failures + - Remove `IsIdentifiable` field from `ExtractedFileVerificationMessage` + and replace with new `VerifiedFileStatus` enum + - Update extraction job classes in `CohortPackager` to store this new + field, and handle backwards-incompatibility when reading older + extraction logs + +## Bugfix + +- [#1285](https://github.com/SMI/SmiServices/pull/1285) by howff. Improve the + removal of HTML tags from StructuredReport (SR) text +- [#1314](https://github.com/SMI/SmiServices/pull/1314) by jas88. Replace + SharpCompress usage due to buggy LZMA handling to fix issue #1313 +- [#1350](https://github.com/SMI/SmiServices/pull/1350) by tznind. Fix + DicomRelationalMapper when running with a YamlRepository backend + +## Change + +- [#1270](https://github.com/SMI/SmiServices/pull/1270) by tznind. Rename yaml + config file `IsIdentifiableBaseOptions` to `IsIdentifiableOptions` and + removed unused CLI verbs in `smi` + +## Meta + +- [#1261](https://github.com/SMI/SmiServices/pull/1261) by jas88. Update + caching strategy in CI + ## [5.2.0] 2022-08-10 ## Feature @@ -1142,7 +1174,8 @@ First stable release after importing the repository from the private - Anonymous `MappingTableName` must now be fully specified to pass validation (e.g. `mydb.mytbl`). Previously skipping database portion was supported. -[unreleased]: https://github.com/SMI/SmiServices/compare/v5.2.0...master +[unreleased]: https://github.com/SMI/SmiServices/compare/v5.3.0...master +[5.3.0]: https://github.com/SMI/SmiServices/compare/v5.2.0...v5.3.0 [5.2.0]: https://github.com/SMI/SmiServices/compare/v5.1.3...v5.2.0 [5.1.3]: https://github.com/SMI/SmiServices/compare/v5.1.2...v5.1.3 [5.1.2]: https://github.com/SMI/SmiServices/compare/v5.1.1...v5.1.2 diff --git a/README.md b/README.md index cc7efb6a7..a018b7560 100644 --- a/README.md +++ b/README.md @@ -5,7 +5,7 @@ ![GitHub](https://img.shields.io/github/license/SMI/SmiServices) [![Total alerts](https://img.shields.io/lgtm/alerts/g/SMI/SmiServices.svg?logo=lgtm&logoWidth=18)](https://lgtm.com/projects/g/SMI/SmiServices/alerts/) -Version: `5.2.0` +Version: `5.3.0` # SMI Services diff --git a/news/1259-feature.md b/news/1259-feature.md deleted file mode 100644 index ed0a7fe31..000000000 --- a/news/1259-feature.md +++ /dev/null @@ -1,3 +0,0 @@ -Add support for extraction processing failures -- Remove `IsIdentifiable` field from `ExtractedFileVerificationMessage` and replace with new `VerifiedFileStatus` enum -- Update extraction job classes in `CohortPackager` to store this new field, and handle backwards-incompatibility when reading older extraction logs \ No newline at end of file diff --git a/news/1270-change.md b/news/1270-change.md deleted file mode 100644 index d6a32e9a8..000000000 --- a/news/1270-change.md +++ /dev/null @@ -1 +0,0 @@ -Rename yaml config file `IsIdentifiableBaseOptions` to `IsIdentifiableOptions` and removed unused CLI verbs in `smi` \ No newline at end of file diff --git a/news/1285-bugfix.md b/news/1285-bugfix.md deleted file mode 100644 index 58ba74f4e..000000000 --- a/news/1285-bugfix.md +++ /dev/null @@ -1 +0,0 @@ -Improve the removal of HTML tags from StructuredReport (SR) text diff --git a/news/1314-bugfix.md b/news/1314-bugfix.md deleted file mode 100644 index d1646e3f9..000000000 --- a/news/1314-bugfix.md +++ /dev/null @@ -1 +0,0 @@ -Replace SharpCompress usage due to buggy LZMA handling to fix issue #1313 diff --git a/news/1350-bugfix.md b/news/1350-bugfix.md deleted file mode 100644 index 4acf721dc..000000000 --- a/news/1350-bugfix.md +++ /dev/null @@ -1 +0,0 @@ -Fix DicomRelationalMapper when running with a YamlRepository backend \ No newline at end of file diff --git a/src/SharedAssemblyInfo.cs b/src/SharedAssemblyInfo.cs index 772ddefec..2bcfd6e56 100644 --- a/src/SharedAssemblyInfo.cs +++ b/src/SharedAssemblyInfo.cs @@ -7,6 +7,6 @@ [assembly: AssemblyCulture("")] // These should be overwritten by release builds -[assembly: AssemblyVersion("5.2.0")] -[assembly: AssemblyFileVersion("5.2.0")] -[assembly: AssemblyInformationalVersion("5.2.0")] // This one can have the extra build info after it +[assembly: AssemblyVersion("5.3.0")] +[assembly: AssemblyFileVersion("5.3.0")] +[assembly: AssemblyInformationalVersion("5.3.0")] // This one can have the extra build info after it